HHsearch alignment for GI: 254781223 and conserved domain: cd03351
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.80 E-value=7.3e-20 Score=99.34 Aligned_cols=106 Identities=16% Similarity=0.264 Sum_probs=52.4
Q ss_pred CCCEEECCCEEECCCCEECCCCEECCCCCCCCCCCCCCCCCEEEEEEE--------------------------------
Q ss_conf 687698897099288399798154575432311222222210011355--------------------------------
Q gi|254781223|r 2 YDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKV-------------------------------- 49 (110)
Q Consensus 2 ~~n~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i-------------------------------- 49 (110)
T Consensus 15 G~~v~Igp~~vIg~~V~IG~~~~I~~~v~I~~~t~IG~~~~I~~~avIG~~pqd~~~~g~~~~v~IG~~~~Ire~vtI~r 94 (254)
T cd03351 15 GENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHR 94 (254)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCC
T ss_conf 99799999989999999999999979968919979776525605753477876767379867699799778995330236
Q ss_pred -----------------------ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCEECCC
Q ss_conf -----------------------202211112221101122222110111111112432201397498499888899698
Q gi|254781223|r 50 -----------------------GGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106 (110)
Q Consensus 50 -----------------------~~~~~i~~~~~i~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~I~~~~~I~~~ 106 (110)
T Consensus 95 gt~~~~~~T~IG~~~~im~~~HIaHdc~IG~~~iian~~~laGhv~Igd~a~IGg~~~v~q~v~IG~~a~Igags~V~kD 174 (254)
T cd03351 95 GTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQD 174 (254)
T ss_pred CCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCEEECCCCEECCCCEECCCCEECCCEEECCCCEEECC
T ss_conf 74378875597888578202544567733797599334455685698998489883677598199966199767456113
Q ss_pred E
Q ss_conf 0
Q gi|254781223|r 107 T 107 (110)
Q Consensus 107 ~ 107 (110)
T Consensus 175 V 175 (254)
T cd03351 175 V 175 (254)
T ss_pred C
T ss_conf 6