HHsearch alignment for GI: 254781223 and conserved domain: cd03352
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.65 E-value=2.7e-16 Score=84.44 Aligned_cols=107 Identities=13% Similarity=0.269 Sum_probs=55.0
Q ss_pred CCCCEEECCCEEECCCCEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECC-------------------CCCCCCCCC
Q ss_conf 9687698897099288399798154575432311222222210011355202-------------------211112221
Q gi|254781223|r 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGY-------------------AKVSGNASV 61 (110)
Q Consensus 1 i~~n~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~-------------------~~i~~~~~i 61 (110)
T Consensus 22 Ig~n~~I~~~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~I 101 (205)
T cd03352 22 IGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGDDVEI 101 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEEECCCEECCCCEECCEEEECCCEEECCCCCCCCCCCCCCEECCCCCCEEECCCEEE
T ss_conf 99999998988999996889883660034472786875447771534862135323147984045142131898488498
Q ss_pred C----------------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCC
Q ss_conf 1----------------------------------------011222221101111111124322013974984998888
Q gi|254781223|r 62 G----------------------------------------GNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDT 101 (110)
Q Consensus 62 ~----------------------------------------~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~I~~~~ 101 (110)
T Consensus 102 g~~~~I~~g~~~~T~IG~~~~i~~~v~igh~~~iG~~~~i~~~~~~~g~~~Igd~~~iG~~s~i~~gv~IG~~a~VgagS 181 (205)
T cd03352 102 GANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGS 181 (205)
T ss_pred CCCCEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCEEECCCCEECCCCEECCCCEECCCCEECCCC
T ss_conf 88627636642677478776864545255640415870750320002652497435398964882993999998998688
Q ss_pred EECCCE
Q ss_conf 996980
Q gi|254781223|r 102 VVEGDT 107 (110)
Q Consensus 102 ~I~~~~ 107 (110)
T Consensus 182 vVtkdV 187 (205)
T cd03352 182 GVTSIV 187 (205)
T ss_pred EECCCC
T ss_conf 796486