HHsearch alignment for GI: 254781223 and conserved domain: cd04646
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.46 E-value=1.2e-13 Score=73.48 Aligned_cols=104 Identities=9% Similarity=0.116 Sum_probs=49.4
Q ss_pred CCEEECCCEEECCCC---------EECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 876988970992883---------99798154575432311222222210011355202211112221101122222110
Q gi|254781223|r 3 DNAVVRDCATVIDDA---------RVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEV 73 (110)
Q Consensus 3 ~n~~I~~~a~I~~~~---------~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i 73 (110)
T Consensus 16 GdV~IG~~~sI~p~avIrgd~g~I~IG~~~nIqd~~~I~~~~~--~~~~~g~~~~IG~~~~i~~g~~ih-~~~IG~~~lI 92 (164)
T cd04646 16 GDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKP--KDPAEPKPMIIGSNNVFEVGCKCE-ALKIGNNNVF 92 (164)
T ss_pred EEEEECCCCEECCCCEEEECCCCEEECCCCEECCCEEEECCCC--CCCCCCCCEEECCCCEECCCEEEE-CCEECCCCEE
T ss_conf 2179999998995759981437889899966669859941787--777899887988998886781995-5597678889
Q ss_pred CCCCCCCCCCCCCCCEEECCCEEECCCCEECCCEEE
Q ss_conf 111111112432201397498499888899698097
Q gi|254781223|r 74 GGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109 (110)
Q Consensus 74 ~~~~~i~~~~~I~~~~~I~~~~~I~~~~~I~~~~~i 109 (110)
T Consensus 93 g~~a~V~~ga~Ig~~ciIgags~V~~~~~ip~~slv 128 (164)
T cd04646 93 ESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVI 128 (164)
T ss_pred CCCCEECCCCEECCCCEECCCCCCCCCCEECCCEEE
T ss_conf 689899999899999899989892899792998599