HHsearch alignment for GI: 254781223 and conserved domain: cd05787
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.08 E-value=9.4e-11 Score=61.36 Aligned_cols=46 Identities=7% Similarity=0.207 Sum_probs=18.4
Q ss_pred CCCCEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 288399798154575432311222222210011355202211112221
Q gi|254781223|r 14 IDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASV 61 (110)
Q Consensus 14 ~~~~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i 61 (110)
T Consensus 3 G~~t~Ig~~~~I-~~svIG~nc~Ig~~~~I~-~svi~d~~~Ig~~~~i 48 (79)
T cd05787 3 GRGTSIGEGTTI-KNSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTI 48 (79)
T ss_pred CCCCEECCCCEE-ECCEECCCCEECCCCEEE-CCEEECCCEECCCCEE
T ss_conf 998999999999-599989999999998894-8999197899999999