HHsearch alignment for GI: 254781223 and conserved domain: cd05825
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.28 E-value=5.6e-12 Score=66.45 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=53.2
Q ss_pred CEECCCCEECCCCCC--CCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 399798154575432--311222222210011355202211112221101122222110111111112432201397498
Q gi|254781223|r 17 ARVSGNASVSRFAQV--KSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGN 94 (110)
Q Consensus 17 ~~I~~n~~I~~~~~i--~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~ 94 (110)
T Consensus 4 v~IG~~~~Ig~~~~I~~~~~i~IG~~~~i~~~v~I~~~~h~~~~~~---~~~~~~~v~Ig~~v~IG~~~~I~~gv~Ig~~ 80 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPA---FPLITAPIVIGDGAWVAAEAFVGPGVTIGEG 80 (107)
T ss_pred EEECCCCEECCCCEEEECCCEEECCCCEECCCCEECCCCCCCCCCC---CCEECCCEEECCCCEECCCCEEECCCEECCC
T ss_conf 7989986899998995388579999739959959707888876766---5316399799388587498789699191899
Q ss_pred EEECCCCEECCCE
Q ss_conf 4998888996980
Q gi|254781223|r 95 AVVGGDTVVEGDT 107 (110)
Q Consensus 95 ~~I~~~~~I~~~~ 107 (110)
T Consensus 81 svVgagSvV~kdv 93 (107)
T cd05825 81 AVVGARSVVVRDL 93 (107)
T ss_pred CEEECCCEECCCC
T ss_conf 7994898890385