HHsearch alignment for GI: 254781223 and conserved domain: cd05825
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.80 E-value=6.6e-09 Score=53.66 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=44.8
Q ss_pred CCCCEEECCCEEEC--CCCEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96876988970992--8839979815457543231122222221001135520221111222110112222211011111
Q gi|254781223|r 1 MYDNAVVRDCATVI--DDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAF 78 (110)
Q Consensus 1 i~~n~~I~~~a~I~--~~~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i~~~~~~~~~~~i~~~~~ 78 (110)
T Consensus 6 IG~~~~Ig~~~~I~~~~~i~IG~~~~i~~~v~I~~~~h~~~~~~~---------------~~~~~~v~Ig~~v~IG~~~~ 70 (107)
T cd05825 6 IGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAF---------------PLITAPIVIGDGAWVAAEAF 70 (107)
T ss_pred ECCCCEECCCCEEEECCCEEECCCCEECCCCEECCCCCCCCCCCC---------------CEECCCEEECCCCEECCCCE
T ss_conf 899868999989953885799997399599597078888767665---------------31639979938858749878
Q ss_pred CCCCCCCCCCEEECCCEEECCC
Q ss_conf 1112432201397498499888
Q gi|254781223|r 79 VIGFTVISGNARVRGNAVVGGD 100 (110)
Q Consensus 79 i~~~~~I~~~~~I~~~~~I~~~ 100 (110)
T Consensus 71 I~~gv~Ig~~svVgagSvV~kd 92 (107)
T cd05825 71 VGPGVTIGEGAVVGARSVVVRD 92 (107)
T ss_pred EECCCEECCCCEEECCCEECCC
T ss_conf 9699191899799489889038