HHsearch results for GI: 254781223 and protein with PDBid: 1j2z_A
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=99.75 E-value=1.5e-18 Score=92.91 Aligned_cols=106 Identities=13% Similarity=0.216 Sum_probs=56.0
Q ss_pred CCCEEECCCEEECCCCEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEE-------------------------------
Q ss_conf 6876988970992883997981545754323112222222100113552-------------------------------
Q gi|254781223|r 2 YDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVG------------------------------- 50 (110)
Q Consensus 2 ~~n~~I~~~a~I~~~~~I~~n~~I~~~~~i~~~~~i~~~~~i~~~~~i~------------------------------- 50 (110)
.+|+.|+|++.|.+++.|++++.|+++++|++++.+++++.+...+.++
T Consensus 17 g~~V~IG~~~vIg~~v~Ig~~~~I~~~v~I~~~t~Ig~~~~i~~~avIG~~~~~~~~~~~~~~v~ig~~~~i~e~~~i~~ 96 (270)
T 1j2z_A 17 NKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLGTQPQDLKYKGEYSELIIGEDNLIREFCMINP 96 (270)
T ss_dssp CTTCEECTTCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEESCCCSCSSCCSCCCEEEECSSCEECTTCEECC
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCEEEECCEEECCCCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCCCCEEEEEC
T ss_conf 99999999989999999999999919989939949752033235328787653244344421799887862331024404
Q ss_pred ------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEECCCCEECCC
Q ss_conf ------------------------02211112221101122222110111111112432201397498499888899698
Q gi|254781223|r 51 ------------------------GYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106 (110)
Q Consensus 51 ------------------------~~~~i~~~~~i~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~I~~~~~I~~~ 106 (110)
+++.++.++.+...+.+.+.+.|+++++|+.++.|.++++|+++++|++++.|.+|
T Consensus 97 ~~~~~~~~t~IG~~~~i~~~~~i~h~~~Ig~~~ii~~~~~i~g~v~IGd~v~IG~~s~I~~gv~IG~~a~IgagS~Vtkd 176 (270)
T 1j2z_A 97 GTEGGIKKTLIGDKNLLMAYVHVAHDCVIGSHCILANGVTLAGHIEIGDYVNIGGLTAIHQFVRIAKGCMIAGKSALGKD 176 (270)
T ss_dssp CCTTTTSEEEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECSSCEECTTCEECTTCEECTTCEECTTCEECSB
T ss_pred CCCCCCCCCEECCCEEECCCEEECCCCEECCCEEEEEEECCCCCCCCCCCEEECCCCEEECCEEECCCCEECCCCEEEEE
T ss_conf 30156778688663299587598665200663033100000011244786188899879166797999888167788755
Q ss_pred E
Q ss_conf 0
Q gi|254781223|r 107 T 107 (110)
Q Consensus 107 ~ 107 (110)
.
T Consensus 177 V 177 (270)
T 1j2z_A 177 V 177 (270)
T ss_dssp B
T ss_pred C
T ss_conf 6