RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781223|ref|YP_003065636.1| intrrupted gp229, phage
associated protein [Candidatus Liberibacter asiaticus str. psy62]
         (110 letters)



>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase;
           Provisional.
          Length = 380

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 12/101 (11%)

Query: 3   DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRD-----NAKVGGYAKVSG 57
           +NA V++ + V++   V G    S   Q     +V + + V+D      AK+G    +  
Sbjct: 287 ENAKVKN-SLVVEGCVVYGTVEHSVLFQ---GVQVGEGSVVKDSVIMPGAKIGENVVIE- 341

Query: 58  NASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVG 98
            A +G NA++ D   +GG   VI  TVI  N  +    V+G
Sbjct: 342 RAIIGENAVIGDGVIIGGGKEVI--TVIGENEVIGVGTVIG 380


>gnl|CDD|162561 TIGR01853, lipid_A_lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase.  This model describes LpxD, an enzyme
           for the biosynthesis of lipid A, a component
           oflipopolysaccharide (LPS) in the outer membrane outer
           leaflet of most Gram-negative bacteria. Some differences
           are found between lipid A of different species. This
           protein represents the third step from
           UDP-N-acetyl-D-glucosamine. The group added at this step
           generally is 14:0(3-OH) (myristate) but may vary; in
           Aquifex it appears to be 16:0(3-OH) (palmitate).
          Length = 324

 Score = 34.2 bits (79), Expect = 0.007
 Identities = 13/84 (15%), Positives = 32/84 (38%)

Query: 17  ARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGD 76
           A +   A V   A++     +  N  +    ++G    +     +G + ++ D + +  +
Sbjct: 92  AGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPN 151

Query: 77  AFVIGFTVISGNARVRGNAVVGGD 100
             +     +  N  +   AV+G D
Sbjct: 152 VVIYERVQLGKNVIIHSGAVIGSD 175



 Score = 26.9 bits (60), Expect = 1.3
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 12/80 (15%)

Query: 11  ATVIDDARVSGNASVSRFAQVKSNAEVSDNT------YVRDNAKVGGYAKVSGNASV--- 61
           A V   A++    ++     + +  E+ +N        + D+  +G  +++  N  +   
Sbjct: 98  AVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYER 157

Query: 62  ---GGNAIVRDTAEVGGDAF 78
              G N I+   A +G D F
Sbjct: 158 VQLGKNVIIHSGAVIGSDGF 177



 Score = 25.3 bits (56), Expect = 3.6
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 24  SVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG-F 82
              R A +   A V  +  + D   +G    +     +G N I+     V GD  VIG  
Sbjct: 87  PPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVII-GPGVVIGDDVVIGDG 145

Query: 83  TVISGNARVRGNAVVG 98
           + I  N  +     +G
Sbjct: 146 SRIHPNVVIYERVQLG 161


>gnl|CDD|130911 TIGR01852, lipid_A_lpxA,
           acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine
           O-acyltransferase.  This model describes LpxA, an enzyme
           for the biosynthesis of lipid A, a component
           oflipopolysaccharide (LPS) in the outer membrane outer
           leaflet of most Gram-negative bacteria. Some differences
           are found between lipid A of different species, but this
           protein represents the first step (from
           UDP-N-acetyl-D-glucosamine) and appears to be conserved
           in function. Proteins from this family contain many
           copies of the bacterial transferase hexapeptide repeat
           (pfam00132).
          Length = 254

 Score = 32.2 bits (74), Expect = 0.029
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 3   DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62
           DN  +R+  T+       G AS     ++ +N  +   +++  +  VG +  ++ NA++ 
Sbjct: 81  DNNTIREFVTI-----NRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLA 135

Query: 63  GNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGD----TVVEGDT 107
           G+  V D A +GG   V  F  I   A + G + V  D     +VEG+ 
Sbjct: 136 GHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLVEGNR 184



 Score = 29.5 bits (67), Expect = 0.20
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 45  DNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGD 100
           +N ++G +  V     +G      D  E+     ++G T I    R+   AV+GG 
Sbjct: 15  ENVEIGPFCIVGPGVKIG------DGVELKSHVVILGHTTIGEGTRIFPGAVIGGV 64



 Score = 27.2 bits (61), Expect = 1.1
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 65  AIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDT 107
           AI+   AE+G +  +  F ++    ++     +    V+ G T
Sbjct: 5   AIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHT 47



 Score = 26.5 bits (59), Expect = 1.8
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 13/103 (12%)

Query: 11  ATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV--- 67
           A +   A +  N  +  F  V    ++ D   ++ +  + G+  +     +   A++   
Sbjct: 5   AIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGV 64

Query: 68  -RDTAEVGGDAFVI---------GFTVISGNARVRGNAVVGGD 100
            +D    G    +I           T+  G A   G   +G +
Sbjct: 65  PQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNN 107


>gnl|CDD|132571 TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
           N-acetyltransferase.  Alternate name:
           tetrahydrodipicolinate N-acetyltransferase. Note that
           IUBMB lists this alternate name as the accepted name.
           Unfortunately, the related succinyl transferase acting
           on the same substrate (EC:2.3.1.117, TIGR00695) uses the
           opposite standard. We have decided to give these two
           enzymes names which more clearly indicated that they act
           on the same substrate.
          Length = 231

 Score = 32.0 bits (73), Expect = 0.030
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 4   NAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGG 63
           NA +   A + D   +  NA +   A +   AE+ + T +  NA +GG A V  N  +G 
Sbjct: 86  NARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGA 145

Query: 64  NAIVRDTAE-------VGGDAFVIGF-TVISGNARVRGNAVVGGDTVVEGD 106
            A++    E       V  D  +IG   VI    RV   AVV    +V  D
Sbjct: 146 GAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTED 196



 Score = 24.7 bits (54), Expect = 5.5
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 32  KSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARV 91
             NA +     +RD   +G       NA +   A++   AE+G    +    V+ G A V
Sbjct: 84  NINARIEPGAIIRDQVIIG------DNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATV 137

Query: 92  RGNAVVGGDTVVEG 105
             N  +G   V+ G
Sbjct: 138 GKNVHIGAGAVLAG 151


>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 456

 Score = 30.4 bits (69), Expect = 0.096
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 10/63 (15%)

Query: 12  TVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRD-----NAKVGGYAKVS-----GNASV 61
           +V++DA +    ++  FA+++  AE+++  +V +      A++G  +K       G+A +
Sbjct: 313 SVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEI 372

Query: 62  GGN 64
           G N
Sbjct: 373 GDN 375


>gnl|CDD|183539 PRK12461, PRK12461, UDP-N-acetylglucosamine acyltransferase;
           Provisional.
          Length = 255

 Score = 30.0 bits (68), Expect = 0.13
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 53  AKVSGNASVGGNAIVRDTAEVGGD------AFVIGFTVISGNARVRGNAVVGGD 100
           AK+     +G  A++    E+G        A ++G T I  N ++   AVVG +
Sbjct: 12  AKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDE 65



 Score = 30.0 bits (68), Expect = 0.13
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 34  NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVIS 86
           + ++ +N  + + A + G+  V   A + GN +V     +G  A + G + IS
Sbjct: 119 DCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRIS 171



 Score = 26.9 bits (60), Expect = 1.0
 Identities = 12/85 (14%), Positives = 33/85 (38%)

Query: 22  NASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG 81
             ++ R  +      + ++  +   + V    ++  N  +   A++     VG  A + G
Sbjct: 89  GVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISG 148

Query: 82  FTVISGNARVRGNAVVGGDTVVEGD 106
             ++    R+   A++ G + +  D
Sbjct: 149 NCLVHQFCRIGALAMMAGGSRISKD 173



 Score = 26.1 bits (58), Expect = 2.2
 Identities = 13/53 (24%), Positives = 27/53 (50%)

Query: 17 ARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRD 69
          A++     +  FA + +N E+ D T++  +A + G  ++  N  +   A+V D
Sbjct: 12 AKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGD 64


>gnl|CDD|163332 TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid
           O-acetyltransferase NeuD family.  These proteins contain
           repeats of the bacterial transferase hexapeptide
           (pfam00132), although often these do not register above
           the trusted cutoff.
          Length = 201

 Score = 29.4 bits (67), Expect = 0.21
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 19/108 (17%)

Query: 9   DCATVID-DARVSGNAS------VSRFAQVKSNAEVSDNTYVRDNA------KVGGYAKV 55
             AT+I   A VS +AS      +   A +  +  + DN  +   A       +G Y  +
Sbjct: 85  RFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHI 144

Query: 56  SGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103
           +   ++ G  ++ +   +G      G T+I     +   A+VG   VV
Sbjct: 145 APGVTLSGGVVIGEGVFIG-----AGATII-QGVTIGAGAIVGAGAVV 186


>gnl|CDD|179994 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase;
           Provisional.
          Length = 262

 Score = 28.9 bits (66), Expect = 0.31
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 65  AIVRDTAEVGGDAFVIG-FTVISGNARVRGNAVVGGDTVVEGDTVL 109
           AIV   A++G +   IG F VI  N  +    V+G   V++G T +
Sbjct: 9   AIVEPGAKIGENV-EIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTI 53


>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 458

 Score = 27.9 bits (63), Expect = 0.53
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 12/72 (16%)

Query: 3   DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRD-----NAKVGGYAKVS- 56
           D   +    +VI++++V  N +V  FA ++  + + +   + +      + +G   KVS 
Sbjct: 305 DGVTIT--NSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSH 362

Query: 57  ----GNASVGGN 64
               G+A VG N
Sbjct: 363 LTYIGDAEVGEN 374


>gnl|CDD|184646 PRK14360, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 450

 Score = 28.0 bits (63), Expect = 0.55
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 8/53 (15%)

Query: 12  TVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGN 64
           ++I+++++  N +V         + VSD+  + D  K+G YA +   A +G N
Sbjct: 293 SLIENSQIGENVTVL-------YSVVSDSQ-IGDGVKIGPYAHLRPEAQIGSN 337


>gnl|CDD|177989 PLN02357, PLN02357, serine acetyltransferase.
          Length = 360

 Score = 27.9 bits (62), Expect = 0.56
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 31  VKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGF-TVISGNA 89
           +   A V +N  +  N  +GG  K SG           D     GD  +IG  T I GN 
Sbjct: 249 IGETAVVGNNVSILHNVTLGGTGKQSG-----------DRHPKIGDGVLIGAGTCILGNI 297

Query: 90  RVRGNAVVGGDTVV 103
            +   A +G  +VV
Sbjct: 298 TIGEGAKIGAGSVV 311


>gnl|CDD|179158 PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase; Provisional.
          Length = 343

 Score = 27.8 bits (63), Expect = 0.59
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 11  ATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDT 70
           A +   A++    S+   A + +   + D   +   A +G   K+  +  +  N  +   
Sbjct: 107 AVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIY-- 164

Query: 71  AEVGGDAFVIGFTVISGNARVRGNAVVGGD 100
                 A  IG  VI     +   AV+G D
Sbjct: 165 -----HAVRIGNRVI-----IHSGAVIGSD 184



 Score = 23.9 bits (53), Expect = 8.3
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 28  FAQVKSNAEVSDNTYVRDNAKVGGY----AKVSGNASVGGNAIVRDTAEVGGDAFVIGFT 83
           F    +   V  N Y    A++       A  S  A +  +A++  +A++G    +    
Sbjct: 67  FVPAGNALLVVKNPY-LAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNA 125

Query: 84  VISGNARVRGNAVVGGDTVVEGDTVL 109
           VI     +    V+G   V+     +
Sbjct: 126 VIGAGVVIGDGVVIGAGAVIGDGVKI 151


>gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine
           diphosphorylase/glucosamine-1-phosphate
           N-acetyltransferase.  This protein is a bifunctional
           enzyme, GlmU, which catalyzes last two reactions in the
           four-step pathway of UDP-N-acetylglucosamine
           biosynthesis from fructose-6-phosphate. Its reaction
           product is required from peptidoglycan biosynthesis, LPS
           biosynthesis in species with LPS, and certain other
           processes.
          Length = 451

 Score = 27.2 bits (61), Expect = 0.90
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 66  IVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVLE 110
            +R T E+G D        I  N  + G   +G D V+    V++
Sbjct: 257 DIRGTVEIGRD------VEIDPNVILEGKVKIGDDVVIGPGCVIK 295



 Score = 27.2 bits (61), Expect = 0.97
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 11/72 (15%)

Query: 3   DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRD-----NAKVGGYAKVS- 56
            N V++   +V++ + +     V  FA+++  + +    ++ +     NA++G  +K   
Sbjct: 301 SNVVIKA-YSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGH 359

Query: 57  ----GNASVGGN 64
               G+A +G N
Sbjct: 360 LSYLGDAEIGSN 371


>gnl|CDD|130240 TIGR01172, cysE, serine O-acetyltransferase.  Cysteine
           biosynthesis.
          Length = 162

 Score = 25.7 bits (57), Expect = 2.3
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 35  AEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGN 94
           A + D+  +     +GG  K  G      +  V +   +G  A V+G   +  NA++  N
Sbjct: 88  AVIGDDVTIYHGVTLGGTGKEKGKR----HPTVGEGVMIGAGAKVLGNIEVGENAKIGAN 143

Query: 95  AVVGGDTVVEGDTV 108
           +VV  D V  G TV
Sbjct: 144 SVVLKD-VPPGATV 156



 Score = 25.7 bits (57), Expect = 2.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 43  VRDNAKVGGYAKVSGN------ASVGGNAIVRDTAEVGGDAFVIG 81
           V +   +G  AKV GN      A +G N++V    +V   A V+G
Sbjct: 116 VGEGVMIGAGAKVLGNIEVGENAKIGANSVV--LKDVPPGATVVG 158


>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 446

 Score = 26.0 bits (58), Expect = 2.4
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 14  IDDARVSGNASVSRFAQVKSNAEVSDNTYVRD-----NAKVGGYAKVS-----GNASVGG 63
           ++ A V   A V  +A+++  AE+ +   V +     NAK+G  AKV+     G+A++G 
Sbjct: 301 LEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGA 360

Query: 64  NA 65
            A
Sbjct: 361 GA 362


>gnl|CDD|162818 TIGR02353, NRPS_term_dom, non-ribosomal peptide synthetase terminal
           domain of unknown function.  This domain is found
           exclusively in non-ribosomal peptide synthetases and
           always as the final domain in the polypeptide. This
           domain is roughly 700 amino acids in size and is found
           in polypeptides roughly twice that size.
          Length = 695

 Score = 25.1 bits (55), Expect = 3.7
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 60  SVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
           ++G   IVR    + G        + +G   +  +A +G  + ++ DT +
Sbjct: 133 TIGAGTIVRKEVMLLG-YRAERGRLHTGPVTLGRDAFIGTRSTLDIDTSI 181


>gnl|CDD|172834 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
           uridyltransferase/glucosamine-1-phosphate
           acetyltransferase; Provisional.
          Length = 481

 Score = 25.3 bits (55), Expect = 4.0
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 63  GNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVLE 110
           G  ++ DT  +G D  +    ++ G  RV     +G  +VV  D+VL 
Sbjct: 263 GTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVT-DSVLH 309


>gnl|CDD|162198 TIGR01090, apt, adenine phosphoribosyltransferase.  A phylogenetic
           analysis suggested omitting the bi-directional best hit
           homologs from the spirochetes from the seed for this
           model and making only tentative predictions of adenine
           phosphoribosyltransferase function for this lineage.
          Length = 169

 Score = 24.5 bits (54), Expect = 6.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 57  GNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVV 97
           G A      I +   EV   AF+I    ++G A++  N  V
Sbjct: 123 GTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEPNVPV 163


>gnl|CDD|182235 PRK10092, PRK10092, maltose O-acetyltransferase; Provisional.
          Length = 183

 Score = 24.0 bits (52), Expect = 8.2
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 33  SNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGN-ARV 91
           S AE+     + +N  +GG A ++   ++G N +V   A V  D  V    V+ GN AR+
Sbjct: 122 SGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGNPARI 179


>gnl|CDD|162226 TIGR01150, puhA, photosynthetic reaction center, subunit H,
           bacterial.  This model describes the photosynthetic
           reaction center H subunit in non-oxygenic photosynthetic
           bacteria. The reaction center is an integral membrane
           pigment-protein that carries out light-driven electron
           transfer reactions. At the core of reaction center is a
           collection light-harvesting cofactors and closely
           associated polypeptides. The core protein complex is
           made of L, M and H subunits. The common cofactors
           include bacterichlorophyll, bacteriopheophytins,
           ubiquinone and no-heme ferrous iron. The net result of
           electron tranfer reactions is the establishment of
           proton electrochemical gradient and production of
           reducing equivalents in the form of NADH. Ultimately,
           the process results in the reduction of C02 to
           carbohydrates(C6H12O6) In non-oxygenic organisms, the
           electron donor is an organic acid rather than water.
           Much of our current functional understanding of
           photosynthesis comes from the structural determination
           and spectroscopic studies on the reaction center of
           Rhodobacter sphaeroides.
          Length = 252

 Score = 24.0 bits (52), Expect = 8.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 81  GFTVISGNARVRGNAVVGGDTVVEGDTV 108
            F+V +G+   RG  VV  D  V G   
Sbjct: 141 DFSVAAGDVDPRGLPVVAADGEVAGKVT 168


>gnl|CDD|171853 PRK13038, PRK13038, superantigen-like protein; Reviewed.
          Length = 227

 Score = 24.2 bits (52), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 49  VGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGF 82
           VGG  + +  + V    I+  + E G DAFV G+
Sbjct: 116 VGGVIQNNKTSGVVSAPILNISKEKGEDAFVKGY 149


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.313    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0844    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,658,116
Number of extensions: 91557
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 68
Length of query: 110
Length of database: 5,994,473
Length adjustment: 76
Effective length of query: 34
Effective length of database: 4,352,265
Effective search space: 147977010
Effective search space used: 147977010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (22.8 bits)