RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781223|ref|YP_003065636.1| intrrupted gp229, phage
associated protein [Candidatus Liberibacter asiaticus str. psy62]
(110 letters)
>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.38A {Salmonella paratyphi} PDB:
2f9c_A
Length = 334
Score = 54.9 bits (131), Expect = 4e-09
Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKV-GGYAKVSGNA 59
+ T+ ++V+ +A + +K + V + VR + + G+A
Sbjct: 216 VIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVLIEGHA 275
Query: 60 SVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
+ G ++ E+ G A VI F +RG V+ G+ + ++
Sbjct: 276 CIQGEILIERQVEISGRAAVIAFD--DNTIHLRGPKVINGEDRITRTPLV 323
Score = 49.1 bits (116), Expect = 2e-07
Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 8 RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67
++ + A V A+V + E +R +++V +A + GN + + +V
Sbjct: 193 LIEGDKDNNVWICDCAKVYGHARVIAGTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLV 252
Query: 68 RDTAEVGGDAFVIG-FTVISGNARVRGNAVVGGDTVVEGDTVLE 110
AEV G ++ +I G+A ++G ++ + G +
Sbjct: 253 GGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAVI 296
Score = 44.5 bits (104), Expect = 5e-06
Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 9 DCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVR 68
DC ++A ++ A++ + +N + DN A +S A + N ++
Sbjct: 58 DCWIYDENAMAFAGTEITGNARITQPCTLYNNVRIGDNV-WIDRADISDGARISDNVTIQ 116
Query: 69 DTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEG 105
+ V + + G + + + + +
Sbjct: 117 S-SSVREECAIYGDARVLNQSEILAIQGLTHEHAQIL 152
Score = 43.3 bits (101), Expect = 1e-05
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 28 FAQVKSNAEVSDNTYVRD-NAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVIS 86
+ + + ++ D NA +++GNA + + + GD I IS
Sbjct: 46 WVDADNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCTLYNNV-RIGDNVWIDRADIS 104
Query: 87 GNARVRGNAVVGGDTVVEGDTV 108
AR+ N + +V E +
Sbjct: 105 DGARISDNVTIQSSSVREECAI 126
Score = 42.1 bits (98), Expect = 3e-05
Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 2 YDNAVVRDCATVIDDARVSGNASVSRFAQVK---SNAEVSDNTYVRDNAKVGGYAKVSGN 58
+++ + + +A ++ R + +N ++ D AKV G+A+V
Sbjct: 160 VNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIAG 219
Query: 59 ASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
+R +++V A + G V+ + V G+A V G ++ D VL
Sbjct: 220 TEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEVRGGPILLDDRVL 270
Score = 40.2 bits (93), Expect = 1e-04
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 1 MYDNAVVRDCATVIDD-ARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNA 59
+ +A VR ++DD + G+A + ++ E+S V A + G
Sbjct: 252 VGGHAEVRGGPILLDDRVLIEGHACIQGEILIERQVEISGRAAV--IAFDDNTIHLRGPK 309
Query: 60 SVGGNAIVRDTAEVG 74
+ G + T VG
Sbjct: 310 VINGEDRITRTPLVG 324
Score = 28.3 bits (62), Expect = 0.49
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 49 VGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTV 108
GG+ S G+ + D +A T I+GNAR+ + + + +
Sbjct: 43 SGGWVDADNVLSQQGDCWIYD-----ENAMAFAGTEITGNARITQPCTLYNNVRIGDNVW 97
>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO;
1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB:
3fsb_A* 3fsc_A*
Length = 273
Score = 37.9 bits (87), Expect = 5e-04
Identities = 7/51 (13%), Positives = 22/51 (43%)
Query: 59 ASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
++ +AI+++ +G + + I +R N + + + ++L
Sbjct: 3 NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSIL 53
Score = 35.6 bits (81), Expect = 0.003
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 2/101 (1%)
Query: 11 ATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGN--AIVR 68
A + + + N ++ + + DN +++ + +G + + N +
Sbjct: 9 AIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVDFYNDRINKK 68
Query: 69 DTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
+G +A + VI G+ + N G + +T +
Sbjct: 69 HPLIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKI 109
Score = 34.5 bits (78), Expect = 0.006
Identities = 7/57 (12%), Positives = 24/57 (42%)
Query: 53 AKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
+S +A + I+ + + + ++ +I N ++ + +G +++ V
Sbjct: 3 NNISKSAIIKEGVIIGENVTIEDNVYIDYGCIIRDNVHIKKGSFIGARSILGEYLVD 59
Score = 29.1 bits (64), Expect = 0.27
Identities = 15/116 (12%), Positives = 43/116 (37%), Gaps = 10/116 (8%)
Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS 60
+ DN T+ ++ ++ N + + ++ + + + + N VG + +
Sbjct: 91 IGDNFQTGHKVTIRENTKIGNNVKIGTLSDIQHHVYIGNYVNIHSNVFVGEKSIIKDFVW 150
Query: 61 VGGNAIVRD----------TAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
+ + ++ + + A + +V+ + +A+VG VV D
Sbjct: 151 LFPHVVLTNDPTPPSNELLGVTIELFAVIAARSVVLPGIHINEDALVGAGAVVTKD 206
Score = 25.2 bits (54), Expect = 3.4
Identities = 2/27 (7%), Positives = 10/27 (37%)
Query: 84 VISGNARVRGNAVVGGDTVVEGDTVLE 110
+I + N + + ++ ++
Sbjct: 10 IIKEGVIIGENVTIEDNVYIDYGCIIR 36
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine
O-acyltransferase; L.interrogans LPXA, LPXA, LPXA
acyltransferase; 2.10A {Leptospira interrogans} PDB:
3i3a_A* 3i3x_A*
Length = 259
Score = 36.5 bits (83), Expect = 0.001
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 64 NAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
AI+ AE+ V +++I GN ++ ++ G + + +
Sbjct: 6 TAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEI 51
Score = 30.0 bits (66), Expect = 0.12
Identities = 10/64 (15%), Positives = 24/64 (37%)
Query: 37 VSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAV 96
+ + A++ +V + + GN +++ + G + + I R AV
Sbjct: 3 IHPTAIIDPKAELHESVEVGPYSIIEGNVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAV 62
Query: 97 VGGD 100
+G
Sbjct: 63 IGVM 66
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose
synthase, ADP-glucose pyrophosphorylase, agpase B; HET:
PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6
PDB: 1yp3_A* 1yp4_A*
Length = 451
Score = 36.6 bits (83), Expect = 0.001
Identities = 13/108 (12%), Positives = 35/108 (32%), Gaps = 16/108 (14%)
Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRD-----NAKVGGYAKV 55
+ + A++ D + D + A+ + N +++ NA++G K+
Sbjct: 355 ISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKI 414
Query: 56 SGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103
+V A D + + +A++ ++
Sbjct: 415 INKDNVQEAARETDGYFIKSGIVTVI-----------KDALIPSGIII 451
Score = 29.6 bits (65), Expect = 0.18
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 1/89 (1%)
Query: 22 NASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG 81
+ V + +S+ + D+ +G + A +G + I
Sbjct: 340 KNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNC-HIK 398
Query: 82 FTVISGNARVRGNAVVGGDTVVEGDTVLE 110
+I NAR+ N + V+
Sbjct: 399 RAIIDKNARIGDNVKIINKDNVQEAARET 427
>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics, joint
center for structural genomics, JCSG; 2.28A
{Desulfovibrio desulfuricans subsp}
Length = 496
Score = 36.5 bits (84), Expect = 0.001
Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 5/111 (4%)
Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62
+ D A + + + D V + + A + ASV
Sbjct: 224 EFHYSFDKAILDKYISQEAGSCPTGVLMEFVEVRQEDFEEVFASGHMASGAGSASGASVS 283
Query: 63 GNAIVRDTAEVGGDAFVIGFTVISG-----NARVRGNAVVGGDTVVEGDTV 108
G A+++ +G + V + + + N + +
Sbjct: 284 GYAVIKGDTVIGENVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVT 334
Score = 27.6 bits (61), Expect = 0.78
Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 5/59 (8%)
Query: 45 DNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103
+ +AKV G ++G G F+ F A G
Sbjct: 406 HSISFEEFAKVDGEVTMGRMTFRG-----KGGPFLDSFKKRIKRILSENGAFFDGSEGT 459
>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-
succinyltransferase;
2,3,4,5-tetrahydropyridine-2-carboxylate N-
succinyltransferase; 1.80A {Yersinia pestis} PDB:
1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A
Length = 276
Score = 36.4 bits (84), Expect = 0.001
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 19/110 (17%)
Query: 17 ARVSGNASVSRFAQVKSN-----------AEVSDNTYVRDNAKVGGYAKVSGNASVGGNA 65
RV A+V + A + N A V + T V A VG A++ N + G
Sbjct: 105 FRVVPPATVRKGAFIARNTVLMPSYVNIGAFVDEGTMVDTWATVGSCAQIGKNVHLSGGV 164
Query: 66 IVRDTAE--------VGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDT 107
+ E + + FV + + V +V+ + T
Sbjct: 165 GIGGVLEPLQANPTIIEDNCFVGARSEVVEGVIVEEGSVISMGVFIGQST 214
Score = 25.6 bits (56), Expect = 2.9
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 4 NAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGG 63
A V CA + + +SG + + + DN VG ++V V
Sbjct: 145 WATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTI----IEDNCFVGARSEVVEGVIVEE 200
Query: 64 NAIVRDTAEVGGDAFVI 80
+++ +G +
Sbjct: 201 GSVISMGVFIGQSTRIY 217
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine
O-acyltransferase; UDP-N-acetylglucosamine
acyltransferase, LPXA; HET: SOG TLA; 2.10A
{Helicobacter pylori} SCOP: b.81.1.1
Length = 270
Score = 35.5 bits (81), Expect = 0.003
Identities = 8/64 (12%), Positives = 27/64 (42%)
Query: 35 AEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGN 94
++++ + A++ ++ +G + + ++ + + G T + N +
Sbjct: 2 SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPF 61
Query: 95 AVVG 98
AV+G
Sbjct: 62 AVLG 65
Score = 33.6 bits (76), Expect = 0.011
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 59 ASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVL 109
+ + AI+ AE+ + F VI ++ + + ++G T +
Sbjct: 2 SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFV 52
Score = 30.9 bits (69), Expect = 0.074
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 53 AKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103
+K++ A + A + E+G + + ++ N + G T V
Sbjct: 2 SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFV 52
Score = 28.6 bits (63), Expect = 0.39
Identities = 12/63 (19%), Positives = 26/63 (41%)
Query: 47 AKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
+K+ A +S A + + + +G + + N ++G+ VG +T +
Sbjct: 2 SKIAKTAIISPKAEINKGVEIGEFCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPF 61
Query: 107 TVL 109
VL
Sbjct: 62 AVL 64
>1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel
beta-helix, transferase; HET: COA UD1; 2.10A
{Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A*
2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A*
Length = 456
Score = 35.1 bits (79), Expect = 0.004
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 11/117 (9%)
Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVS----DNTYVRDNAKVGGYAKVS 56
+ ++A + T+ AR+ A + A V + E+ + G A++
Sbjct: 314 VVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIG 373
Query: 57 GNASVGGNAIV-------RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
N ++G I + +G D FV T + V A + T V +
Sbjct: 374 DNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRN 430
Score = 28.5 bits (62), Expect = 0.35
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Query: 3 DNAVV-RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASV 61
DN + T D + V S+ ++ V A + V+ N
Sbjct: 374 DNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGE 433
Query: 62 GGNAIVR 68
AI R
Sbjct: 434 NALAISR 440
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape,
transferase, peptidoglycan synthesis, associative
mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A*
2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A*
Length = 456
Score = 35.0 bits (79), Expect = 0.004
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 9 DCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNA-IV 67
+ GN + + V ++V+ TYV ++++G +
Sbjct: 333 RPGAELAAETHVGNFVEIKKSTVGKGSKVNHLTYV-GDSEIGSNCNIGAGVITCNYDGAN 391
Query: 68 RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
+ +G D FV T + +V A +G T + D
Sbjct: 392 KFKTIIGDDVFVGSDTQLVAPVKVANGATIGAGTTITRD 430
>3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann-like fold, LEFT-handed-beta-helix, trimer, cell
shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A
3d98_A* 3dj4_A 3foq_A 2qkx_A*
Length = 495
Score = 34.7 bits (78), Expect = 0.005
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 40 NTYVRDNAKVG-GYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVG 98
+ + + + +G V+ + + V G D + I A VV
Sbjct: 380 DADIGEYSNIGASSVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVR 439
Query: 99 GD 100
D
Sbjct: 440 ED 441
Score = 27.4 bits (59), Expect = 0.78
Identities = 10/58 (17%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 10 CATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67
V D +V + S+ + D A G V + V A+
Sbjct: 393 SVFVNYDGTSKRRTTVGSHVRTGSDTMFVAPVTIGDGAYTGAGTVVRED--VPPGALA 448
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase;
acetyltransferase, bifunctional, crystallography, drug
design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae}
SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 1g97_A*
1g95_A*
Length = 468
Score = 33.9 bits (76), Expect = 0.008
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 39 DNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVG 98
N V N G +G +V + + +G + FV + I + N++VG
Sbjct: 376 GNCEVGSNVNFG-----AGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVG 430
Query: 99 GDTVVEGD 106
+ + D
Sbjct: 431 AGSTITKD 438
Score = 27.0 bits (58), Expect = 1.2
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 10 CATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67
TV D + + V SN+ + + DN+ VG + ++ + V +AI
Sbjct: 390 TITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKD--VPADAIA 445
Score = 26.2 bits (56), Expect = 1.9
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 45 DNAKVGGYAKVSGNASVGGNAIV-RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVV 103
+N K G + GN VG N T V D TVI N V N+ + +
Sbjct: 365 ENTKAGHLTYI-GNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVEL 423
Query: 104 EGDTVL 109
++++
Sbjct: 424 GDNSLV 429
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose
pyrophosphorylase, allostery, kinetics,
structure-function relationships; 2.10A {Agrobacterium
tumefaciens}
Length = 420
Score = 33.8 bits (76), Expect = 0.009
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 37 VSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAV 96
+ + + + Y+++ NA V + + A++ VI + +
Sbjct: 337 ALNRSLLFTGVRANSYSRLE-NAVVLPSVKIGRHAQLSN-------VVIDHGVVIPEGLI 388
Query: 97 VGGDTVVEG 105
VG D ++
Sbjct: 389 VGEDPELDA 397
Score = 29.5 bits (65), Expect = 0.16
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 55 VSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVLE 110
+ + + + V + IG N + V+ +V D L+
Sbjct: 343 LFTGVRANSYSRLENA--VVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGEDPELD 396
Score = 27.6 bits (60), Expect = 0.64
Identities = 4/67 (5%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGG--YAKVSGNAS 60
+ + + V+ ++ +A +S + + + V ++ ++ + +
Sbjct: 351 SYSRLENA-VVLPSVKIGRHAQLSN-VVIDHGVVIPEGLIVGEDPELDAKRFRRTESGIC 408
Query: 61 VGGNAIV 67
+ +++
Sbjct: 409 LITQSMI 415
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta
helix; HET: U20; 1.74A {Escherichia coli K12} SCOP:
b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Length = 262
Score = 33.3 bits (75), Expect = 0.013
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 55 VSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTV 108
+ +A V AIV + A +G +A + F ++ + + V+ VV G T
Sbjct: 2 IDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTK 55
Score = 28.3 bits (62), Expect = 0.48
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 31 VKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR 90
+ +A V V + A +G NA +G IV E+G + V++G+ +
Sbjct: 2 IDKSAFVHPTAIVEEGASIG------ANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTK 55
Query: 91 VRGN 94
+ +
Sbjct: 56 IGRD 59
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
PDB: 2iu9_A* 2iua_A*
Length = 374
Score = 32.3 bits (72), Expect = 0.025
Identities = 13/99 (13%), Positives = 40/99 (40%)
Query: 8 RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67
+ VI + V A+ + ++ V + + + + ++ +V ++ + A +
Sbjct: 224 KHLGKVIIEDDVEIGANTTIDRGRFKHSVVREGSKIDNLVQIAHQVEVGQHSMIVAQAGI 283
Query: 68 RDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
+ ++G + G I+G+ + + ++ T V
Sbjct: 284 AGSTKIGNHVIIGGQAGITGHICIADHVIMMAQTGVTKS 322
>3cj8_A 2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase;
APC86892, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.95A {Enterococcus faecalis V583}
Length = 236
Score = 32.1 bits (72), Expect = 0.034
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 4 NAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGG 63
NA + A + + + A + A + A V T + A +GG A V + +G
Sbjct: 91 NARIEPGALIREKVEIGDQAVIMMGAILNIGAVVGAGTMIDMGAVLGGRATVGKHCHIGA 150
Query: 64 NAI--------VRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
+ + + + V+ RV AVV VV D
Sbjct: 151 GTVLAGVIEPPSAAPVVIENEVVIGANAVVLEGVRVGEGAVVAAGAVVVED 201
Score = 25.9 bits (56), Expect = 2.3
Identities = 11/59 (18%), Positives = 25/59 (42%)
Query: 44 RDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTV 102
N+ + NA + A++R+ E+G A ++ +++ A V ++ V
Sbjct: 77 ARNSAIPFLDLKDINARIEPGALIREKVEIGDQAVIMMGAILNIGAVVGAGTMIDMGAV 135
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase;
beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Length = 401
Score = 31.1 bits (69), Expect = 0.055
Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 6/106 (5%)
Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS 60
+ V + I G++ ++ + +++ + KV K +
Sbjct: 293 VEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGR 352
Query: 61 VGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
A + G + I ++ A + VV D
Sbjct: 353 RKLGAFIGGHVRTGIN------VTILPGVKIGAYARIYPGAVVNRD 392
>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina
thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A
1qrm_A 1qrl_A 1thj_A
Length = 247
Score = 31.3 bits (70), Expect = 0.062
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62
D V+ T+ ++ + V + + +N + ++V G A V + +G
Sbjct: 110 DGVVLHALETINEEGEPIEDNIVEVDGKEY-AVYIGNNVSLAHQSQVHGPAAVGDDTFIG 168
Query: 63 GNAI-----VRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDT 101
A V + + + IG I + VV
Sbjct: 169 MQAFVFKSKVGNNCVLEPRSAAIG-VTIPDGRYIPAGMVVTSQA 211
Score = 30.9 bits (69), Expect = 0.067
Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 26/134 (19%)
Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVK----SNAEVSDNTYVRDNAKVGGYAKVSGN 58
A + A+VI + + N VS A ++ V D + V+D + ++
Sbjct: 64 PTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEE 123
Query: 59 ASVGGNAIVRDTAEVGG----------------------DAFVIGFTVISGNARVRGNAV 96
+ IV + D IG ++V N V
Sbjct: 124 GEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCV 183
Query: 97 VGGDTVVEGDTVLE 110
+ + G T+ +
Sbjct: 184 LEPRSAAIGVTIPD 197
>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix,
acetyl transferase, transferase; HET: ACO U5P UDP PE4;
1.43A {Bordetella petrii} PDB: 3mqh_A*
Length = 192
Score = 30.2 bits (67), Expect = 0.13
Identities = 14/74 (18%), Positives = 32/74 (43%)
Query: 34 NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93
A + V + A++G ++++ + G A + + +G + FV I +++
Sbjct: 3 MATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQN 62
Query: 94 NAVVGGDTVVEGDT 107
N V + +E D
Sbjct: 63 NVSVYDNVFLEDDV 76
Score = 25.9 bits (56), Expect = 2.1
Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 33/137 (24%)
Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62
A + A V + AR+ ++ + + + AE+ + + N VG ++ +
Sbjct: 2 HMATIHPTAIVDEGARIGAHSRIWHWVHICGGAEIGEGCSLGQNVFVGNRVRIGNRVKIQ 61
Query: 63 GNAIVRDTAE---------------------------------VGGDAFVIGFTVISGNA 89
N V D V A + + A
Sbjct: 62 NNVSVYDNVFLEDDVFCGPSMVFTNVYNPRAAIERKSEYRDTIVRQGATLGANCTVVCGA 121
Query: 90 RVRGNAVVGGDTVVEGD 106
+ A VG VV D
Sbjct: 122 TIGRYAFVGAGAVVNKD 138
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
LEFT-handed parallel beta helix, acyl carrier protein,
antibiotic resistance; 2.60A {Escherichia coli}
Length = 341
Score = 29.9 bits (66), Expect = 0.14
Identities = 12/76 (15%), Positives = 31/76 (40%)
Query: 31 VKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR 90
+ + + + + ++ + N +V G I+ + ++G + G +VI+G+
Sbjct: 219 ALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHME 278
Query: 91 VRGNAVVGGDTVVEGD 106
+ V G +V
Sbjct: 279 ICDKVTVTGMGMVMRP 294
Score = 25.3 bits (54), Expect = 3.0
Identities = 14/80 (17%), Positives = 32/80 (40%)
Query: 22 NASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG 81
+A + A++ +N + N + ++G + VG N+ + + + + +
Sbjct: 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH 162
Query: 82 FTVISGNARVRGNAVVGGDT 101
I N ++ VVG D
Sbjct: 163 EIQIGQNCLIQSGTVVGADG 182
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Bacteroides vulgatus atcc 8482}
Length = 310
Score = 29.5 bits (66), Expect = 0.16
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 6/81 (7%)
Query: 33 SNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNA-----IVRDTAEVGGDAFVIGFTVISG 87
+ + + +N + +G + N I+ D V +A ++G I
Sbjct: 215 ATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGK 274
Query: 88 NARVRGNAVVGGDTVVEGDTV 108
A V GN V + V G +
Sbjct: 275 GATVGGNIWVTEN-VPAGSRI 294
Score = 29.5 bits (66), Expect = 0.20
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS 60
+ N V + + + + + + + D+ V NA + G + A+
Sbjct: 218 IIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGKGAT 277
Query: 61 VGGNAIVRDTAEVGGDAFVIG 81
VGGN V T V + ++
Sbjct: 278 VGGNIWV--TENVPAGSRIVQ 296
Score = 28.7 bits (64), Expect = 0.30
Identities = 9/64 (14%), Positives = 18/64 (28%)
Query: 4 NAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGG 63
+ + G S + + + D+ V A + G ++G
Sbjct: 215 ATSIIGNNVKLYQGVTLGAKSFPLDNNGNPIKGIPRHPILEDDVIVYSNATILGRVTIGK 274
Query: 64 NAIV 67
A V
Sbjct: 275 GATV 278
>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of
trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6
Length = 289
Score = 28.9 bits (64), Expect = 0.27
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 31 VKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR 90
V A + ++ + + +GG K G+ +R+ +G A ++G + A+
Sbjct: 180 VGETAVIENDVSILQSVTLGGTGKSGGDRHP----KIREGVMIGAGAKILGNIEVGRGAK 235
Query: 91 VRGNAVVGGDTVVEGDTV 108
+ +VV V T
Sbjct: 236 IGAGSVVLQP-VPPHTTA 252
>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix
polysia; HET: PEG; 1.70A {Escherichia coli}
Length = 252
Score = 28.0 bits (62), Expect = 0.57
Identities = 13/110 (11%), Positives = 30/110 (27%), Gaps = 6/110 (5%)
Query: 3 DNAVVRDCATVIDDARVS-GNASV----SRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSG 57
N+ ++ ++V G + K N + + + + +
Sbjct: 90 KNSKIKGDIVATKGSKVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRASDGHPI 149
Query: 58 NASVGGNAIVRDTAEVGGDAFVIGF-TVISGNARVRGNAVVGGDTVVEGD 106
I + +G I V +V+G ++V D
Sbjct: 150 FDIHSKKRINWAKDIIISSYVWVGRNVSIMKGVSVGSGSVIGYGSIVTKD 199
>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapeptide repeat:serine
O-acetyltransferase...; ssgcid, structural genomics;
1.95A {Brucella melitensis biovar abortus}
Length = 287
Score = 27.8 bits (61), Expect = 0.58
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 34 NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93
A V DN + +GG K SG + +R +G A ++G + +++
Sbjct: 190 TAVVEDNVSILHGVTLGGTGKSSG----DRHPKIRQGVLIGAGAKILGNIQVGQCSKIAA 245
Query: 94 NAVVGGDTVVEGDTV 108
+VV V TV
Sbjct: 246 GSVVLKS-VPHNVTV 259
Score = 27.0 bits (59), Expect = 0.98
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSN--AEVSDNTYVRDNAKVGGYAKVSGN 58
VV + A V D+ + ++ + + ++ + AK+ G +V
Sbjct: 181 HATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQC 240
Query: 59 ASVGGNAIVRDTAEVGGDAFVIG 81
+ + ++V V + V G
Sbjct: 241 SKIAAGSVV--LKSVPHNVTVAG 261
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (60), Expect = 0.73
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 31/116 (26%)
Query: 12 TVIDDARVSGNASVSRFAQV----KSNAEVSDNTYVRDNAKVGGYAK------------- 54
T ++ V+GN++ + +AQV ++N ++ D ++ +V A
Sbjct: 762 TALEHKVVNGNSADAAYAQVEIQPRANIQL-DFPELKPYKQVKQIAPAELEGLLDLERVI 820
Query: 55 -VSGNASVG--GNAIVRDTAEVGGD---------AFVIGFTVISGNARVRGNAVVG 98
V+G A VG G+A R E G+ A+++GF + N ++G G
Sbjct: 821 VVTGFAEVGPWGSARTRWEMEAFGEFSLEGCVEMAWIMGF-ISYHNGNLKGRPYTG 875
>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle
structural genomics center for infectious disease;
1.61A {Anaplasma phagocytophilum}
Length = 191
Score = 27.6 bits (60), Expect = 0.76
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 36 EVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVR 68
V ++ NA++ G + NAS+ ++R
Sbjct: 35 SVDSTAFIAGNARIIGDVCIGKNASIWYGTVLR 67
Score = 24.9 bits (53), Expect = 4.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 70 TAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGD 106
+ V AF+ G I G+ + NA + TV+ GD
Sbjct: 33 SPSVDSTAFIAGNARIIGDVCIGKNASIWYGTVLRGD 69
Score = 24.1 bits (51), Expect = 7.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 69 DTAEVGGDAFVIGFTVISGNARVRGNAVVGGD 100
TA + G+A +IG I NA + V+ GD
Sbjct: 38 STAFIAGNARIIGDVCIGKNASIWYGTVLRGD 69
>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta
helix; HET: SOP; 1.90A {Neisseria meningitidis serogroup
Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*
Length = 215
Score = 27.0 bits (59), Expect = 0.97
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 9 DCATVIDDARVSGNASVSRFAQVK----SNAEVSDNTYVRDNAKVGGYAKVSGN-ASVGG 63
DC+ I GN ++ + K + ++ +R+ Y+ +G + G
Sbjct: 77 DCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNTDMHPIYSLENGERINHGK 136
Query: 64 NAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTV 108
+ I+ + +G + ++ I N V + V+ +
Sbjct: 137 DVIIGNHVWLGRNVTILKGVCIPNNVVVGSHTVLYKSFKEPNCVI 181
>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase,
structural genomics, riken structural
genomics/proteomics initiative; 1.50A {Pyrococcus
horikoshii OT3} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A
Length = 173
Score = 26.8 bits (58), Expect = 1.3
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 34 NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNA 65
+ + +V +NA V G + SV +A
Sbjct: 10 KPRIHPSAFVDENAVVIGDVVLEEKTSVWPSA 41
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide,
cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae}
PDB: 2jql_A*
Length = 151
Score = 26.3 bits (57), Expect = 1.7
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 8 RDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIV 67
R C ++ + +S + Q+ + + V D ++ G ++GN V + I+
Sbjct: 46 RSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNG--TFINGNRLVKKDYIL 103
Query: 68 RDTAEVGGDAFVIGFTV 84
++ GD V G +
Sbjct: 104 KN-----GDRIVFGKSC 115
>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel
beta-helix domain; 1.80A {Enterococcus faecium} SCOP:
b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A*
1mrl_A* 3dho_A*
Length = 209
Score = 26.1 bits (57), Expect = 1.9
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 28 FAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIG-FTVIS 86
KS + +N +VG Y+ + + + D IG F I
Sbjct: 11 IEGNKSVQFIKPILEKLENVEVGEYSYYDSKNGETFDKQILYHYPILNDKLKIGKFCSIG 70
Query: 87 GNARVRGNA 95
+ N
Sbjct: 71 PGVTIIMNG 79
>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A
{Escherichia coli} SCOP: b.81.1.3
Length = 182
Score = 25.7 bits (56), Expect = 2.9
Identities = 13/73 (17%), Positives = 24/73 (32%)
Query: 34 NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93
+ DN + + + A + +G + ++ G VI+ +
Sbjct: 92 PIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 151
Query: 94 NAVVGGDTVVEGD 106
N VV VV D
Sbjct: 152 NVVVASGAVVTKD 164
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis KOD1} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 25.0 bits (53), Expect = 3.9
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 71 AEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVE 104
E G +A +IG + +V +GG +E
Sbjct: 294 TEKGRNAAIIGEVIADYRGKVLLETGIGGKRFME 327
>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix;
HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB:
1kqa_A* 1kru_A* 1krv_A*
Length = 203
Score = 25.0 bits (54), Expect = 4.6
Identities = 11/73 (15%), Positives = 26/73 (35%)
Query: 34 NAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93
+ DN + N + + + +G + ++ VI+ +
Sbjct: 95 TVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154
Query: 94 NAVVGGDTVVEGD 106
N+V+G ++V D
Sbjct: 155 NSVIGAGSIVTKD 167
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 23.7 bits (51), Expect = 9.0
Identities = 4/19 (21%), Positives = 6/19 (31%), Gaps = 4/19 (21%)
Query: 2 YDNA----VVRDCATVIDD 16
+ V C V+ D
Sbjct: 36 ERFSEGDVVCALCGLVLSD 54
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.313 0.131 0.358
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 823,077
Number of extensions: 30884
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 85
Length of query: 110
Length of database: 5,693,230
Length adjustment: 74
Effective length of query: 36
Effective length of database: 3,899,174
Effective search space: 140370264
Effective search space used: 140370264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)