BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781223|ref|YP_003065636.1| intrrupted gp229, phage
associated protein [Candidatus Liberibacter asiaticus str. psy62]
(110 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781223|ref|YP_003065636.1| intrrupted gp229, phage associated protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 110
Score = 208 bits (529), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS 60
MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS
Sbjct: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNAS 60
Query: 61 VGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVLE 110
VGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVLE
Sbjct: 61 VGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTVVEGDTVLE 110
>gi|255764481|ref|YP_003065182.2| UDP-N-acetylglucosamine acyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 271
Score = 30.8 bits (68), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 1 MYDNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVS------DNTYVRDNAKVGGYAK 54
M +N ++ A V + A + N+ + F V S E+ + V K+G + K
Sbjct: 4 MGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDFTK 63
Query: 55 VSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARV-RGNAVVGGDTVV 103
V A +GG+ + VG + V VI + RG GG T+V
Sbjct: 64 VFPMAVLGGDTQSKYHNFVGTELLVGKKCVIREGVTINRGTVEYGGKTIV 113
Score = 27.3 bits (59), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 40 NTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGG 99
N++V + K+G +S N + G+ IV D GG + V FT R+ A +GG
Sbjct: 122 NSHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFT------RIGKYAFIGG 175
Query: 100 DTVVEGDTV 108
T V D +
Sbjct: 176 MTGVVHDVI 184
Score = 23.1 bits (48), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 35 AEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNAR---- 90
+ + +N + A V A + N+ +G V E+G +I V++G +
Sbjct: 2 SRMGNNPIIHPLALVEEGAVIGPNSLIGPFCCVGSEVEIGAGVELISHCVVAGKTKIGDF 61
Query: 91 --VRGNAVVGGDT 101
V AV+GGDT
Sbjct: 62 TKVFPMAVLGGDT 74
Score = 22.7 bits (47), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 29 AQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFT 83
+ V + ++ + + +N + G+ V GG + V +G AF+ G T
Sbjct: 123 SHVAHDCKLGNGIVLSNNVMIAGHVIVDDRVVFGGGSAVHQFTRIGKYAFIGGMT 177
>gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 347
Score = 27.3 bits (59), Expect = 0.064, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 34/74 (45%)
Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG 62
D+ ++ + + + ++ N + + S ++ +TY+ DN +GG ++G +G
Sbjct: 239 DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIG 298
Query: 63 GNAIVRDTAEVGGD 76
N + + V D
Sbjct: 299 DNVQIASKSGVLKD 312
Score = 25.4 bits (54), Expect = 0.26, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 28/65 (43%)
Query: 39 DNTYVRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVG 98
D+T + +N K+ ++ N +G I+ + G ++ +I G + G +G
Sbjct: 239 DDTIIGENTKIDNQVQIGHNVHIGCGCIIVSQVGIAGSTYIGDNVLIGGQCGIAGYLKIG 298
Query: 99 GDTVV 103
+ +
Sbjct: 299 DNVQI 303
Score = 24.6 bits (52), Expect = 0.48, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 15 DDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYAKVSGNASVG----------GN 64
+D ++ ++ A V E+ TYV + +G ++ N S+G GN
Sbjct: 127 EDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSSIYSSLIGN 186
Query: 65 AIVRDTA-EVGGDAF 78
+++ + +G D F
Sbjct: 187 SVILHSGVRIGNDGF 201
Score = 20.4 bits (41), Expect = 9.0, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 43 VRDNAKVGGYAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRGNAVVGGDTV 102
+ A +G K+ + A+V E+G +V +VI R+ N +G +
Sbjct: 119 ISPQAFLGEDVKIEDGVVIAPMAVVYPGVEIGRKTYVGPGSVIGAGVRIGRNCSIGAGSS 178
Query: 103 V 103
+
Sbjct: 179 I 179
>gi|254780901|ref|YP_003065314.1| single-stranded-DNA-specific exonuclease protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 600
Score = 22.3 bits (46), Expect = 2.4, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 13 VIDDARVSGNASVSRFAQVKSNAEVSDNTYVRDNAKVGGYA 53
+ D V G ASV+ + S+ V+ N Y+ D V GY
Sbjct: 97 IFGDYDVDGAASVALMMRFLSHCSVNANMYIPDRI-VDGYG 136
>gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 354
Score = 22.3 bits (46), Expect = 2.5, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 3 DNAVVRDCATVIDDARVSGNASVSRFAQVKSN 34
DN + I+DA GNA +SR A + S+
Sbjct: 8 DNKTEAPSSKKIEDALNEGNAPISREASLFSS 39
>gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 342
Score = 21.9 bits (45), Expect = 2.7, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 52 YAKVSGNASVGGNAIVRDTAEVGGDAFVIGFTVISGNARVRG 93
+ S NAS+ G+ R + G + ++GF + N +G
Sbjct: 17 FTSFSTNASILGDIKKRGFLKCGINTGLVGFAEVKANGDWKG 58
>gi|254781029|ref|YP_003065442.1| chemotaxis sensory transducer [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1828
Score = 21.2 bits (43), Expect = 5.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 79 VIGFTVISGNARVRGNAVVGGDTVVEGDTVLE 110
VI +I +RVRG V + +E VLE
Sbjct: 1136 VITNQIIDSTSRVRGEIVDISNKFIETSRVLE 1167
>gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 242
Score = 20.8 bits (42), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 37 VSDNTYVRDNAKVGGYAKVSGNASVGG-----NAIVRDTAEVGGDAFVIGFTVISGNARV 91
+SD Y R KV G A ++G + G N I D AEV IG V GN
Sbjct: 1 MSDFPYKRVLLKVSGEA-LAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGGGNI-F 58
Query: 92 RGNAVV 97
RG+ VV
Sbjct: 59 RGSQVV 64
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.313 0.131 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,263
Number of Sequences: 1233
Number of extensions: 2363
Number of successful extensions: 34
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 110
length of database: 328,796
effective HSP length: 63
effective length of query: 47
effective length of database: 251,117
effective search space: 11802499
effective search space used: 11802499
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 32 (16.9 bits)