Query gi|254781224|ref|YP_003065637.1| hypothetical protein CLIBASIA_05655 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs 54 out of 56
Neff 4.0
Searched_HMMs 23785
Date Wed Jun 1 02:06:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781224.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nfn_A Apolipoprotein E3; lipi 96.0 0.016 6.9E-07 32.3 6.6 66 23-88 96-161 (191)
2 1nfn_A Apolipoprotein E3; lipi 96.0 0.014 5.9E-07 32.7 6.1 47 34-80 96-142 (191)
3 1gs9_A Apolipoprotein E, APOE4 95.5 0.0098 4.1E-07 33.6 3.5 47 32-78 94-140 (165)
4 1gs9_A Apolipoprotein E, APOE4 95.0 0.11 4.6E-06 27.5 7.8 64 23-86 96-159 (165)
5 3lay_A Zinc resistance-associa 94.3 0.21 9E-06 25.8 9.8 54 22-75 74-140 (175)
6 3epv_A CNRX, nickel and cobalt 59.4 7.4 0.00031 16.9 8.8 39 29-67 14-52 (109)
7 1t3j_A Mitofusin 1; coiled coi 49.3 11 0.00046 15.9 6.9 36 19-54 29-64 (96)
8 2jo8_A Serine/threonine-protei 31.3 21 0.00089 14.2 6.2 36 40-75 13-48 (51)
9 3ol1_A Vimentin; structural ge 25.1 27 0.0012 13.6 12.4 36 39-75 64-99 (119)
10 2yy0_A C-MYC-binding protein; 19.8 35 0.0015 12.9 5.3 31 33-71 19-49 (53)
No 1
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=96.04 E-value=0.016 Score=32.31 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999888999999999999999999999999999999999999999999999999999999999999
Q gi|254781224|r 23 ETALPYLATKADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTKWFMGIIVS 88 (103)
Q Consensus 23 e~~~~~l~~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei~~~~~~l~G~~~a 88 (103)
++..++-.++.++..+|..+......|+..+...+..+|..+.....+|+..+....-.|...+.+
T Consensus 96 ~~e~l~~~l~~~~eelr~~l~~~~~el~~~~~~~~eelr~~l~~~~eel~~~l~~~~eel~~~L~~ 161 (191)
T 1nfn_A 96 ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAV 161 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999988779999999999899999988889999999999789999998899
No 2
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=96.00 E-value=0.014 Score=32.71 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999
Q gi|254781224|r 34 DLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTK 80 (103)
Q Consensus 34 di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei~~~~~ 80 (103)
++..+|.++..++..+|..+......++..+...+.++|+.+...+.
T Consensus 96 ~~e~l~~~l~~~~eelr~~l~~~~~el~~~~~~~~eelr~~l~~~~e 142 (191)
T 1nfn_A 96 ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLR 142 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998877999999999989999998888999
No 3
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=95.46 E-value=0.0098 Score=33.62 Aligned_cols=47 Identities=23% Similarity=0.343 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999
Q gi|254781224|r 32 KADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQ 78 (103)
Q Consensus 32 k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei~~~ 78 (103)
-.++..||..+..++..+|..+......+|..+.....++|..+...
T Consensus 94 ~~~~e~lr~~l~~~~eelr~kl~~~~eEl~~~l~~~~ee~r~~l~p~ 140 (165)
T 1gs9_A 94 SKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASH 140 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999878999999999889999999999999999987999
No 4
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=95.00 E-value=0.11 Score=27.50 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998889999999999999999999999999999999999999999999999999999999999
Q gi|254781224|r 23 ETALPYLATKADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTKWFMGII 86 (103)
Q Consensus 23 e~~~~~l~~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei~~~~~~l~G~~ 86 (103)
++..++..+..++.++|..+......++..+...+..+|..+...+.+||..+..++--|..-+
T Consensus 96 ~~e~lr~~l~~~~eelr~kl~~~~eEl~~~l~~~~ee~r~~l~p~~eelr~~l~~~~eelr~kL 159 (165)
T 1gs9_A 96 ELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998789999999998899999999999999999879999999999999999999987
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp}
Probab=94.34 E-value=0.21 Score=25.83 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998889999999999999999999999999-------------9999999999999999999999
Q gi|254781224|r 22 LETALPYLATKADLADVRTELKQDIANVRTEL-------------KADIADVRTELACTKSELKDAI 75 (103)
Q Consensus 22 ~e~~~~~l~~k~di~~LR~Elk~~i~~LR~El-------------k~di~~LR~El~~~~~~LR~ei 75 (103)
..+..++.+.+.++..||.++++.-..|+..+ ..+|++||+++..++.+++.+|
T Consensus 74 ~~~~~I~~~~~~~~~~Lr~qL~akr~EL~aLl~~~~~D~akI~aL~~eI~~Lr~qL~~~R~~~~~qm 140 (175)
T 3lay_A 74 ATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAM 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999717999999999999999999999999999999999
No 6
>3epv_A CNRX, nickel and cobalt resistance protein CNRR; all alpha helix, coiled coil, periplasm, plasmid, metal binding protein; HET: MSE; 1.74A {Ralstonia metallidurans CH34}
Probab=59.44 E-value=7.4 Score=16.88 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999
Q gi|254781224|r 29 LATKADLADVRTELKQDIANVRTELKADIADVRTELACT 67 (103)
Q Consensus 29 l~~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~ 67 (103)
-+=+..|..|+.+.+.+...+|.++...-..|+.-+.++
T Consensus 14 ~~Q~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~l~~~~ 52 (109)
T 3epv_A 14 ANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKN 52 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 999999999999999998875310688999999987627
No 7
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=49.34 E-value=11 Score=15.91 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999988899999999999999999999999999
Q gi|254781224|r 19 FTKLETALPYLATKADLADVRTELKQDIANVRTELK 54 (103)
Q Consensus 19 ~~~~e~~~~~l~~k~di~~LR~Elk~~i~~LR~Elk 54 (103)
-|++|+...+-.+...+..-+.||..+|..|..|+.
T Consensus 29 QVQQELs~TFaRLc~qVd~t~~eLeeEI~~L~~eI~ 64 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEID 64 (96)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998899999999999999999
No 8
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=31.32 E-value=21 Score=14.22 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999
Q gi|254781224|r 40 TELKQDIANVRTELKADIADVRTELACTKSELKDAI 75 (103)
Q Consensus 40 ~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei 75 (103)
.|+.+-.++|-.||..+|..||.--+.-+.-+=++|
T Consensus 13 eeL~~Rl~sLD~eME~EieeLr~RYq~KRqPILdAi 48 (51)
T 2jo8_A 13 EDLQKRLLALDPMMEQEIEEIRQKYQSKRQPILDAI 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 999999986668899999999999887434399997
No 9
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens}
Probab=25.09 E-value=27 Score=13.56 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999
Q gi|254781224|r 39 RTELKQDIANVRTELKADIADVRTELACTKSELKDAI 75 (103)
Q Consensus 39 R~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei 75 (103)
|.++..++..+|.++ .+....|.++.+.+..|++++
T Consensus 64 r~~~E~el~~lrk~l-d~~~l~r~dLE~~~e~L~eEl 99 (119)
T 3ol1_A 64 REEAENTLQSFRQDV-DNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999879-999988888999999999999
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=19.82 E-value=35 Score=12.93 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999999
Q gi|254781224|r 33 ADLADVRTELKQDIANVRTELKADIADVRTELACTKSEL 71 (103)
Q Consensus 33 ~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~L 71 (103)
+|+..||.|+ .|+++....|-.|.+.+.+.|
T Consensus 19 ~DvEaLrlE~--------~eLkqK~e~L~eEN~eLK~kL 49 (53)
T 2yy0_A 19 PEIELLRLEL--------AEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 0099999999--------999999999999999999998
Done!