HHSEARCH alignment of GI: 254781224 and SCOP domain: d1gs9a_

Alignment
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=95.73  E-value=0.026  Score=29.72  Aligned_cols=59  Identities=19%  Similarity=0.217  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88999999999999999999999999999999999999999999999999999999999
Q gi|254781224|r   27 PYLATKADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTKWFMGI   85 (103)
Q Consensus        27 ~~l~~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei~~~~~~l~G~   85 (103)
                      ++-.+..++..||..+..++..+|..+..-+.++|..+...+.++|+.+...+..+..-
T Consensus        68 ~~~~l~~~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~  126 (144)
T d1gs9a_          68 TRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKR  126 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99888865999999998789999999998899999999899999999878999999999


SCOP domain information

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Apolipoprotein
family: Apolipoprotein
domain: Apolipoprotein E
species: Human (Homo sapiens), E4 [TaxId: 9606]