HHSEARCH alignment of GI: 254781224 and SCOP domain: d1gs9a_

Alignment

Probab=95.43  E-value=0.0059  Score=33.52  Aligned_cols=60  Identities=23%  Similarity=0.248  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999888999999999999999999999999999999999999999999999999999999
Q gi|254781224|r   23 ETALPYLATKADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQTKWF   82 (103)
Q Consensus        23 e~~~~~l~~k~di~~LR~Elk~~i~~LR~Elk~di~~LR~El~~~~~~LR~ei~~~~~~l   82 (103)
                      ++..++..+..++.++|..+..-+..+|..+..++..+|..+...+.+|+..+...+--|
T Consensus        75 ~~e~lr~~l~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel  134 (144)
T d1gs9a_          75 ELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDL  134 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             599999999878999999999889999999989999999987899999999998899999

SCOP domain information

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Apolipoprotein
family: Apolipoprotein
domain: Apolipoprotein E
species: Human (Homo sapiens), E4 [TaxId: 9606]