RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781224|ref|YP_003065637.1| hypothetical protein
CLIBASIA_05655 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>gnl|CDD|36664 KOG1451, KOG1451, KOG1451, Oligophrenin-1 and related Rho
           GTPase-activating proteins [Signal transduction
           mechanisms].
          Length = 812

 Score = 27.3 bits (60), Expect = 0.86
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 9   KVQKDSVEIRFTKLETALPYLATKADLADVRTELKQDIANVRTELKADIADVRTELACTK 68
           +VQ+     RF  +E  L +L +      V +EL QD    + +L+  + + R     T+
Sbjct: 183 EVQEVQERKRFEFVEPLLAFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQNTRNNFNATR 242

Query: 69  SELKD 73
           +E ++
Sbjct: 243 AEAEE 247


>gnl|CDD|31524 COG1333, ResB, ResB protein required for cytochrome c
          biosynthesis [Posttranslational modification, protein
          turnover, chaperones].
          Length = 478

 Score = 26.8 bits (59), Expect = 1.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 81 WFMGIIVSVLVSTIGILLK 99
          WF+ IIV + VS +G  L 
Sbjct: 58 WFLAIIVLLGVSLVGCSLP 76


>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde
          dehydrogenase AlkH-like.  Aldehyde dehydrogenase AlkH
          (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL
          operon that allows Pseudomonas putida to metabolize
          alkanes and the aldehyde dehydrogenase AldX of Bacillus
          subtilis (locus P46329, EC=1.2.1.3), and similar
          sequences, are present in this CD.
          Length = 433

 Score = 24.9 bits (55), Expect = 5.0
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 13/66 (19%)

Query: 29 LATKADLADVRTE----LKQDIANVRTELKADI-ADVR--------TELACTKSELKDAI 75
          LA +A  A  R      LK+ I   R E+ A + AD R        TE+    SE+  AI
Sbjct: 12 LALRASTAAERIAKLKRLKKAILARREEIIAALAADFRKPAAEVDLTEILPVLSEINHAI 71

Query: 76 NSQTKW 81
              KW
Sbjct: 72 KHLKKW 77


>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain.  These
          proteins contain several 22 residue repeats which form
          a pair of alpha helices. This family includes:
          Apolipoprotein A-I, Apolipoprotein A-IV, and
          Apolipoprotein E.
          Length = 191

 Score = 24.9 bits (55), Expect = 5.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 37 DVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQT 79
          +   +L ++   +R EL+ D+ +VR  L     ELK  +    
Sbjct: 27 EFWAQLSKETEALREELQKDLEEVRARLQPYLDELKAKVGQNL 69



 Score = 24.1 bits (53), Expect = 7.7
 Identities = 11/47 (23%), Positives = 25/47 (53%)

Query: 33 ADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINSQT 79
           DL +VR  L+  +  ++ ++  ++ ++R  LA    EL++ +N   
Sbjct: 45 KDLEEVRARLQPYLDELKAKVGQNLEELRQRLAPYAEELRERLNRDA 91


>gnl|CDD|30657 COG0309, HypE, Hydrogenase maturation factor [Posttranslational
           modification, protein turnover, chaperones].
          Length = 339

 Score = 24.4 bits (53), Expect = 7.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 37  DVRTELKQDIANVRTELKADIADVRTELACTKSELKDA 74
           ++ TEL  D A +   +KA ++ V   LA   + + DA
Sbjct: 188 ELETELGSDCAPLAKLVKALLSVVGEALAAAVTAMHDA 225


>gnl|CDD|31749 COG1561, COG1561, Uncharacterized stress-induced protein [Function
           unknown].
          Length = 290

 Score = 24.0 bits (52), Expect = 8.6
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 6   VRQKVQKDSVEIRFTKLETALPYLATKADLADVRTELKQDIANVRTELKADIA 58
           +  ++ +   ++   +LE  +  LA KAD+A+    LK  +   R  L+    
Sbjct: 188 LVARLNEAQDQLDEDRLEQEVALLAQKADIAEELDRLKSHVKEFRNILEKGGP 240


>gnl|CDD|176967 CHL00025, ndhF, NADH dehydrogenase subunit 5.
          Length = 741

 Score = 24.1 bits (53), Expect = 8.8
 Identities = 6/12 (50%), Positives = 11/12 (91%)

Query: 86  IVSVLVSTIGIL 97
           I+ +L++T+GIL
Sbjct: 95  IMLILITTVGIL 106


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.129    0.338 

Gapped
Lambda     K      H
   0.267   0.0752    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 967,684
Number of extensions: 38985
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 19
Length of query: 103
Length of database: 6,263,737
Length adjustment: 70
Effective length of query: 33
Effective length of database: 4,751,107
Effective search space: 156786531
Effective search space used: 156786531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)