RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781224|ref|YP_003065637.1| hypothetical protein
CLIBASIA_05655 [Candidatus Liberibacter asiaticus str. psy62]
(103 letters)
>gnl|CDD|184618 PRK14318, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 27.6 bits (62), Expect = 0.68
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 33 ADLADVRTELKQDIANVRTELKADIAD---VRTELACTKSELKDA 74
A+LA T L Q + NV K A VR +A ++EL D
Sbjct: 362 AELASAMTVLPQVLINVPVVDKTTAATAPSVRAAVARAEAELGDT 406
>gnl|CDD|151900 pfam11461, RILP, Rab interacting lysosomal protein. RILP
contains a domain which contains two coiled-coil
regions and is found mainly in the cytosol. RILP is
recruited onto late endosomal and lysosomal membranes
by Rab7 and acts as a downstream effector of Rab7. This
recruitment process is important for phagosome
maturation and fusion with late endosomes and
lysosomes.
Length = 60
Score = 27.3 bits (61), Expect = 1.00
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 41 ELKQDIANVRTELKADIADVRTELACTKSELKDAIN 76
EL+ ++ R ELKA + ++ ELA KSEL
Sbjct: 4 ELR-EVLQERNELKAKVFLLQEELAYYKSELLPEER 38
>gnl|CDD|151424 pfam10977, DUF2797, Protein of unknown function (DUF2797). This
family of proteins has no known function.
Length = 233
Score = 26.1 bits (58), Expect = 2.1
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 38 VRTELKQDIA---NVRTELKADIADVRTELACTKSELKDAI 75
V LK +A N R LK + DV LA ++ L + I
Sbjct: 118 VEVALKAHVADKTNWRKMLKGLVEDVD--LAAERARLLEEI 156
>gnl|CDD|177550 PHA03173, PHA03173, UL37 tegument protein; Provisional.
Length = 1028
Score = 25.8 bits (57), Expect = 2.9
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 33 ADLADVRTELKQDIANVRTELKADIADVRTELACTKSELK--DAINSQT 79
AD+ D + + R +L+AD+A +RT +A T + L+ +A+ +QT
Sbjct: 784 ADVVDAVGGYYGEYNDARADLRADLAALRTVIAETTAALQECEALAAQT 832
>gnl|CDD|150304 pfam09592, DUF2031, Protein of unknown function (DUF2031). This
protein is expressed in Plasmodium; its function is
unknown. It may be the product of gene family pyst-b.
Length = 228
Score = 25.8 bits (57), Expect = 2.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 45 DIANVRTELKADIADVRTELACTKSELKDAINS 77
D+ NV + K I ++R EL K EL + N
Sbjct: 102 DLNNVDKKTKKLINELRKELEEVKKELDNKRNG 134
>gnl|CDD|184349 PRK13824, PRK13824, replication initiation protein RepC;
Provisional.
Length = 404
Score = 24.8 bits (55), Expect = 4.6
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 13 DSVEIRFTKLETALPYLATKADLADVRTELKQDIANVRTELKADIADV 60
+ VE RF + LP AT A+L + EL L+ ++ ++
Sbjct: 196 EGVEQRFRAIVARLPRRATLAELEPILDEL--------EALREEVVNL 235
>gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent.
Length = 1164
Score = 24.6 bits (54), Expect = 5.0
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 33 ADLADVRTELKQDIANVRTELKADIADVRTELACTKSELKDAINS 77
+L + + L+Q+I NV++ELK A + EL +L++A+N
Sbjct: 740 EELEEDLSSLEQEIENVKSELKELEARI-EELEEDLHKLEEALND 783
>gnl|CDD|163210 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT
protein. Members of this protein family are the YaeT
protein of the YaeT/YfiO complex for assembling proteins
into the outer membrane of Gram-negative bacteria. This
protein is similar in sequence and function to a
non-essential paralog, YtfM, that is also in the Omp85
family. Members of this family typically have five
tandem copies of the surface antigen variable number
repeat (pfam07244), followed by an outer membrane
beta-barrel domain (pfam01103), while the YtfM family
typically has a single pfam07244 repeat.
Length = 741
Score = 24.5 bits (54), Expect = 6.9
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 69 SELKDAINSQTKWFMGII 86
SEL+D + F
Sbjct: 166 SELRDVFALKESNFWSWF 183
>gnl|CDD|148076 pfam06248, Zw10, Centromere/kinetochore Zw10. Zw10 and rough
deal proteins are both required for correct metaphase
check-pointing during mitosis. These proteins bind to
the centromere/kinetochore.
Length = 571
Score = 23.9 bits (52), Expect = 8.9
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 26 LPYLATKADLADVRTELKQDIAN-----VRTELKADIADVRTELACTKSELKDAINS 77
LP +++ +L + L +DI++ V E+ D+ ELA K +L++ I
Sbjct: 42 LPNMSSAEELLSRVSSLSEDISDLLASEVSNEILQDLNVAVEELAELKRQLEEKILG 98
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.129 0.338
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,424,547
Number of extensions: 74124
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 41
Length of query: 103
Length of database: 5,994,473
Length adjustment: 70
Effective length of query: 33
Effective length of database: 4,481,913
Effective search space: 147903129
Effective search space used: 147903129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (22.9 bits)