RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781224|ref|YP_003065637.1| hypothetical protein
CLIBASIA_05655 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle,
           acetyl-COA, cysteine-sulfenic acid, lyase; HET: ACO PG4;
           1.95A {Escherichia coli str} (A:1-583)
          Length = 583

 Score = 25.8 bits (56), Expect = 1.9
 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 4/34 (11%)

Query: 54  KADIADVRTELACT----KSELKDAINSQTKWFM 83
            A I DV  E A +      +   A++++ K  +
Sbjct: 253 PAHINDVIVEAAISTILDCEDSVAAVDAEDKILL 286


>1yhn_B RILP, RAB interacting lysosomal protein; protein
          transport; HET: GTP; 3.00A {Homo sapiens} (B:)
          Length = 65

 Score = 24.5 bits (53), Expect = 4.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 44 QDIANVRTELKADIADVRTELACTKSEL 71
          + I   R ELKA +  ++ ELA  + EL
Sbjct: 6  EQILQERNELKAKVFLLKEELAYFQREL 33


>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA
          synthetase class II, ligase; 3.23A {Methanococcus
          maripaludis S2} (A:550-614)
          Length = 65

 Score = 23.9 bits (51), Expect = 6.9
 Identities = 4/10 (40%), Positives = 7/10 (70%), Gaps = 3/10 (30%)

Query: 14 SVEIRFTKLE 23
          +VE+   K+E
Sbjct: 1  NVEV---KIE 7


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.129    0.338 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 608,516
Number of extensions: 20612
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 7
Length of query: 103
Length of database: 4,956,049
Length adjustment: 61
Effective length of query: 42
Effective length of database: 2,893,944
Effective search space: 121545648
Effective search space used: 121545648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)