RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781224|ref|YP_003065637.1| hypothetical protein CLIBASIA_05655 [Candidatus Liberibacter asiaticus str. psy62] (103 letters) >1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA, cysteine-sulfenic acid, lyase; HET: ACO PG4; 1.95A {Escherichia coli str} (A:1-583) Length = 583 Score = 25.8 bits (56), Expect = 1.9 Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 4/34 (11%) Query: 54 KADIADVRTELACT----KSELKDAINSQTKWFM 83 A I DV E A + + A++++ K + Sbjct: 253 PAHINDVIVEAAISTILDCEDSVAAVDAEDKILL 286 >1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} (B:) Length = 65 Score = 24.5 bits (53), Expect = 4.8 Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 44 QDIANVRTELKADIADVRTELACTKSEL 71 + I R ELKA + ++ ELA + EL Sbjct: 6 EQILQERNELKAKVFLLKEELAYFQREL 33 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} (A:550-614) Length = 65 Score = 23.9 bits (51), Expect = 6.9 Identities = 4/10 (40%), Positives = 7/10 (70%), Gaps = 3/10 (30%) Query: 14 SVEIRFTKLE 23 +VE+ K+E Sbjct: 1 NVEV---KIE 7 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.129 0.338 Gapped Lambda K H 0.267 0.0650 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 608,516 Number of extensions: 20612 Number of successful extensions: 63 Number of sequences better than 10.0: 1 Number of HSP's gapped: 63 Number of HSP's successfully gapped: 7 Length of query: 103 Length of database: 4,956,049 Length adjustment: 61 Effective length of query: 42 Effective length of database: 2,893,944 Effective search space: 121545648 Effective search space used: 121545648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.2 bits)