BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781224|ref|YP_003065637.1| hypothetical protein
CLIBASIA_05655 [Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781224|ref|YP_003065637.1| hypothetical protein CLIBASIA_05655 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 103

 Score =  206 bits (524), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MEKTAVRQKVQKDSVEIRFTKLETALPYLATKADLADVRTELKQDIANVRTELKADIADV 60
           MEKTAVRQKVQKDSVEIRFTKLETALPYLATKADLADVRTELKQDIANVRTELKADIADV
Sbjct: 1   MEKTAVRQKVQKDSVEIRFTKLETALPYLATKADLADVRTELKQDIANVRTELKADIADV 60

Query: 61  RTELACTKSELKDAINSQTKWFMGIIVSVLVSTIGILLKLSSH 103
           RTELACTKSELKDAINSQTKWFMGIIVSVLVSTIGILLKLSSH
Sbjct: 61  RTELACTKSELKDAINSQTKWFMGIIVSVLVSTIGILLKLSSH 103


>gi|254781198|ref|YP_003065611.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 117

 Score = 29.6 bits (65), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 20/84 (23%)

Query: 18 RFTKLETALPYLATKAD-----LADVRTELKQDIANVRTELKADIADVRTELACTKSELK 72
          R T LE     L+ K +     L +   + ++DIANVR E    +A+VR E+A  ++E+ 
Sbjct: 31 RITLLEKNYERLSDKVEASHTKLMEAILDNREDIANVRIE----VANVRIEVANVRTEM- 85

Query: 73 DAINSQTKWFMGIIVSVLVSTIGI 96
                    +G+I  +  + IGI
Sbjct: 86 ----------LGLIWKIPATAIGI 99


>gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 189

 Score = 28.1 bits (61), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 6   VRQKVQKDSVEIRFTKLETALPYLATKADLADVRTE---LKQDIANVRTELKADIADVRT 62
           VR  V +D  +I F      + +L+ +   +   +    LK  +AN+      ++ D+RT
Sbjct: 129 VRPAVARDGGDIVFKGYRDGIVFLSMRGACSGCPSASETLKYGVANILNHFVPEVKDIRT 188


>gi|254780668|ref|YP_003065081.1| hypothetical protein CLIBASIA_02775 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 46

 Score = 26.6 bits (57), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 29 LATKADLADVRTELKQDIANVRTELKADIADVR 61
          LAT ADL +  ++ K ++A V+ ELKA++   R
Sbjct: 4  LATGADLTEKFSKGKLNVAAVKCELKAEVTVTR 36


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.129    0.338 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,107
Number of Sequences: 1233
Number of extensions: 1474
Number of successful extensions: 11
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 103
length of database: 328,796
effective HSP length: 62
effective length of query: 41
effective length of database: 252,350
effective search space: 10346350
effective search space used: 10346350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 32 (16.9 bits)