HHsearch alignment for GI: 254781225 and conserved domain: COG0324
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis].
Probab=90.47 E-value=0.83 Score=23.09 Aligned_cols=70 Identities=27% Similarity=0.422 Sum_probs=26.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 9999707886257899999997233000344267642012455556898899738980999934677760131
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~ 575 (789)
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~~e-IIs~DSmQvY--r~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa 74 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLGGE-IISLDSMQVY--RGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSA 74 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-EEECCHHHHC--CCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCH
T ss_conf 79998988757789999999982992-8930235531--8886307999999985899787545683225549