HHsearch alignment for GI: 254781225 and conserved domain: PRK00080
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed.
Probab=93.13 E-value=0.48 Score=24.68 Aligned_cols=141 Identities=19% Similarity=0.254 Sum_probs=80.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCCHHHHHHCCCC
Q ss_conf 789999988879999999999999999759874-3379999707886257899999997233000-34426764201245
Q gi|254781225|r 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPP 544 (789)
Q Consensus 467 p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~-~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~~~~~~~~~~~ 544 (789)
T Consensus 22 ~~l~efi----GQ~~i~~~L~v~i~Aak~r~e~ldH--~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~--lek---- 89 (328)
T PRK00080 22 KSLDEFI----GQEKVKENLKIFIEAAKKRGEALDH--VLLYGPPGLGKTTLANIIANEMGVNIRITSGPA--LEK---- 89 (328)
T ss_pred CCHHHCC----CHHHHHHHHHHHHHHHHHCCCCCCC--EEEECCCCCCHHHHHHHHHHHHCCCCEECCCCC--CCC----
T ss_conf 8576635----9599999999999999964999880--576588998899999999998688815624500--167----
Q ss_pred CCCCCCHHHHHHCCCEEEEEECCCCCCCCCCC---------EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCC
Q ss_conf 55568988997389809999346777601310---------024541598587321047860687145289997388634
Q gi|254781225|r 545 EAGKANPSLIRLMGSRIVIISETNENDEINAA---------KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 (789)
Q Consensus 545 ~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~---------~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~ 615 (789)
T Consensus 90 -~~DL~~iLt~l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g-~~Ar~~~----i-~L~pFTLIGATTr~g~ 162 (328)
T PRK00080 90 -AGDLAALLTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKG-PAARSIR----L-DLPPFTLIGATTRAGL 162 (328)
T ss_pred -HHHHHHHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCC-CCCEEEE----C-CCCCEEEEECCCCCCC
T ss_conf -4789999960887876765065324888998857987752345786478-6532455----5-8998347401367665
Q ss_pred CCCCCCCEEEEEEE
Q ss_conf 26798416646899
Q gi|254781225|r 616 VRNPDDAWWRRYIV 629 (789)
Q Consensus 616 ~~~~d~~~~rR~~i 629 (789)
T Consensus 163 ---Ls~PLrdRFGi 173 (328)
T PRK00080 163 ---LTSPLRDRFGI 173 (328)
T ss_pred ---CCHHHHHHCCC
T ss_conf ---77678975793