HHsearch alignment for GI: 254781225 and conserved domain: PRK00440

>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=96.52  E-value=0.01  Score=35.73  Aligned_cols=135  Identities=18%  Similarity=0.204  Sum_probs=73.0

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH-HHCCCCC---CCCCHHHHHHCCCCCCC
Q ss_conf             9988879999999999999999759874337999970788625789999999-7233000---34426764201245555
Q gi|254781225|r  472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYV---INAEASDIMQNRPPEAG  547 (789)
Q Consensus       472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~-llG~~~~---~~~~~~~~~~~~~~~~~  547 (789)
T Consensus        14 ~l~di~g~~~~~~~L~~~i~---~~~~p-h--lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd---~r~i--d   82 (318)
T PRK00440         14 SLDEVVGQEEIVERLKSFVK---EKNMP-H--LLFAGPPGTGKTTAALALARELYGEYWRENFLELNASD---ERGI--D   82 (318)
T ss_pred             CHHHHCCCHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCC---CCCH--H
T ss_conf             89994196999999999998---79986-6--98889599889999999999976986434768951645---6671--7


Q ss_pred             CCCH---HHHHH---CC--CEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCC
Q ss_conf             6898---89973---89--8099993467776013100245415985873210478606871452899973886342679
Q gi|254781225|r  548 KANP---SLIRL---MG--SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP  619 (789)
Q Consensus       548 ~~~~---~la~l---~g--~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~  619 (789)
T Consensus        83 ~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL-----------~----~~mE~~~~~~~fil~~n~~~kii--  145 (318)
T PRK00440         83 VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQAL-----------R----RTMEMYSQTTRFILSCNYSSKII--  145 (318)
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHH-----------H----HHHHCCCCCCEEEEECCCCCCCC--
T ss_conf             899999999972677899738999868553225567888-----------7----64310566625886348833376--


Q ss_pred             CCCEEEEEEEEECCCC
Q ss_conf             8416646899965887
Q gi|254781225|r  620 DDAWWRRYIVIPFDKP  635 (789)
Q Consensus       620 d~~~~rR~~iipF~~~  635 (789)
T Consensus       146 -~~i~SRc~~i~f~~~  160 (318)
T PRK00440        146 -DPIQSRCAVFRFSPL  160 (318)
T ss_pred             -CCHHHHHEEEECCCC
T ss_conf             -155655101115789