HHsearch alignment for GI: 254781225 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=96.52 E-value=0.01 Score=35.73 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=73.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH-HHCCCCC---CCCCHHHHHHCCCCCCC
Q ss_conf 9988879999999999999999759874337999970788625789999999-7233000---34426764201245555
Q gi|254781225|r 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYV---INAEASDIMQNRPPEAG 547 (789)
Q Consensus 472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~-llG~~~~---~~~~~~~~~~~~~~~~~ 547 (789)
T Consensus 14 ~l~di~g~~~~~~~L~~~i~---~~~~p-h--lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd---~r~i--d 82 (318)
T PRK00440 14 SLDEVVGQEEIVERLKSFVK---EKNMP-H--LLFAGPPGTGKTTAALALARELYGEYWRENFLELNASD---ERGI--D 82 (318)
T ss_pred CHHHHCCCHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCC---CCCH--H
T ss_conf 89994196999999999998---79986-6--98889599889999999999976986434768951645---6671--7
Q ss_pred CCCH---HHHHH---CC--CEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCC
Q ss_conf 6898---89973---89--8099993467776013100245415985873210478606871452899973886342679
Q gi|254781225|r 548 KANP---SLIRL---MG--SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619 (789)
Q Consensus 548 ~~~~---~la~l---~g--~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~ 619 (789)
T Consensus 83 ~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL-----------~----~~mE~~~~~~~fil~~n~~~kii-- 145 (318)
T PRK00440 83 VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQAL-----------R----RTMEMYSQTTRFILSCNYSSKII-- 145 (318)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHH-----------H----HHHHCCCCCCEEEEECCCCCCCC--
T ss_conf 899999999972677899738999868553225567888-----------7----64310566625886348833376--
Q ss_pred CCCEEEEEEEEECCCC
Q ss_conf 8416646899965887
Q gi|254781225|r 620 DDAWWRRYIVIPFDKP 635 (789)
Q Consensus 620 d~~~~rR~~iipF~~~ 635 (789)
T Consensus 146 -~~i~SRc~~i~f~~~ 160 (318)
T PRK00440 146 -DPIQSRCAVFRFSPL 160 (318)
T ss_pred -CCHHHHHEEEECCCC
T ss_conf -155655101115789