HHsearch alignment for GI: 254781225 and conserved domain: PRK03992

>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=97.50  E-value=0.0053  Score=37.68  Aligned_cols=209  Identities=16%  Similarity=0.167  Sum_probs=107.5

Q ss_pred             CCCCCCCCHHHCCCCCCEEEECCCE---EECCC----CCCCCCC------HHHHCCEECCCCCCCCCCHHHHH----HHH
Q ss_conf             0000123202205797176607937---97438----8855898------65501001378888757947899----999
Q gi|254781225|r  411 AGSIFSITSDLLDSSSRFLGEQDGI---LDLET----GQKVKPT------KELYITKSTGTPFVEGEPSQEFL----DLV  473 (789)
Q Consensus       411 ~~~~~~~~~~~ld~~~~ll~~~NGv---~dl~t----~~~~~~~------~~~~~t~~~~~~y~~~a~~p~~~----~~l  473 (789)
T Consensus        52 ~p~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~pg~~V~l~~~~~~i~~~l~~~~d~~v~~m~v~e~P~v~~  131 (390)
T PRK03992         52 PPLIVATVLEVLDDGRVVVKSSTGPQFVVTVSSFVDRDKLKPGARVALNQQTLAIVEVLPSEKDPRVRAMEVIESPDVTY  131 (390)
T ss_pred             CCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
T ss_conf             99489999998379749999789987999657876888879999899853530305646888786211042147999984


Q ss_pred             HHHCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             88879999999999999999759-------87433799997078862578999999972330003442676420124555
Q gi|254781225|r  474 SGYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA  546 (789)
Q Consensus       474 ~~~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~  546 (789)
T Consensus       132 ~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk-~vGes  210 (390)
T PRK03992        132 EDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FIGEG  210 (390)
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC-CCCHH
T ss_conf             66149899999999999998659899997699999727868989997899999999874888799667997524-54179


Q ss_pred             C---CCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEE----EECC-CCCCEEEECCEEEEEECCCCCCCCC
Q ss_conf             5---689889973898099993467776013100245415985873----2104-7860687145289997388634267
Q gi|254781225|r  547 G---KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA----RLNY-GNTYSESPASFTPFIVPNKHLFVRN  618 (789)
Q Consensus       547 ~---~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~a----r~~~-~~~~~~~~p~~~~~~~~N~~P~~~~  618 (789)
T Consensus       211 ek~vr~lF~~Ar~~aP~IiFiDEiDa---i~~~R~~~~~~g~~ev~r~l~qLL~emDG~-~~~~~V~VIaATNr---pd~  283 (390)
T PRK03992        211 ARLVRELFELAREKAPSIIFIDEIDA---IAAKRTDSGTSGDREVQRTLMQLLAEMDGF-DPRGNVKIIAATNR---PDI  283 (390)
T ss_pred             HHHHHHHHHHHHHHCCCEEEHHHHHH---HHCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCCEEEEEECCC---CHH
T ss_conf             99999999999970990897143256---633567788862088999999999974487-77788279960698---100


Q ss_pred             CCCCEEE--EE
Q ss_conf             9841664--68
Q gi|254781225|r  619 PDDAWWR--RY  627 (789)
Q Consensus       619 ~d~~~~r--R~  627 (789)
T Consensus       284 LDpAllRpGRF  294 (390)
T PRK03992        284 LDPALLRPGRF  294 (390)
T ss_pred             CCHHHHCCCCC
T ss_conf             59777547765