HHsearch alignment for GI: 254781225 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=97.50 E-value=0.0053 Score=37.68 Aligned_cols=209 Identities=16% Similarity=0.167 Sum_probs=107.5
Q ss_pred CCCCCCCCHHHCCCCCCEEEECCCE---EECCC----CCCCCCC------HHHHCCEECCCCCCCCCCHHHHH----HHH
Q ss_conf 0000123202205797176607937---97438----8855898------65501001378888757947899----999
Q gi|254781225|r 411 AGSIFSITSDLLDSSSRFLGEQDGI---LDLET----GQKVKPT------KELYITKSTGTPFVEGEPSQEFL----DLV 473 (789)
Q Consensus 411 ~~~~~~~~~~~ld~~~~ll~~~NGv---~dl~t----~~~~~~~------~~~~~t~~~~~~y~~~a~~p~~~----~~l 473 (789)
T Consensus 52 ~p~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~pg~~V~l~~~~~~i~~~l~~~~d~~v~~m~v~e~P~v~~ 131 (390)
T PRK03992 52 PPLIVATVLEVLDDGRVVVKSSTGPQFVVTVSSFVDRDKLKPGARVALNQQTLAIVEVLPSEKDPRVRAMEVIESPDVTY 131 (390)
T ss_pred CCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99489999998379749999789987999657876888879999899853530305646888786211042147999984
Q ss_pred HHHCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 88879999999999999999759-------87433799997078862578999999972330003442676420124555
Q gi|254781225|r 474 SGYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 (789)
Q Consensus 474 ~~~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~ 546 (789)
T Consensus 132 ~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk-~vGes 210 (390)
T PRK03992 132 EDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FIGEG 210 (390)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC-CCCHH
T ss_conf 66149899999999999998659899997699999727868989997899999999874888799667997524-54179
Q ss_pred C---CCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEE----EECC-CCCCEEEECCEEEEEECCCCCCCCC
Q ss_conf 5---689889973898099993467776013100245415985873----2104-7860687145289997388634267
Q gi|254781225|r 547 G---KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA----RLNY-GNTYSESPASFTPFIVPNKHLFVRN 618 (789)
Q Consensus 547 ~---~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~a----r~~~-~~~~~~~~p~~~~~~~~N~~P~~~~ 618 (789)
T Consensus 211 ek~vr~lF~~Ar~~aP~IiFiDEiDa---i~~~R~~~~~~g~~ev~r~l~qLL~emDG~-~~~~~V~VIaATNr---pd~ 283 (390)
T PRK03992 211 ARLVRELFELAREKAPSIIFIDEIDA---IAAKRTDSGTSGDREVQRTLMQLLAEMDGF-DPRGNVKIIAATNR---PDI 283 (390)
T ss_pred HHHHHHHHHHHHHHCCCEEEHHHHHH---HHCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCCEEEEEECCC---CHH
T ss_conf 99999999999970990897143256---633567788862088999999999974487-77788279960698---100
Q ss_pred CCCCEEE--EE
Q ss_conf 9841664--68
Q gi|254781225|r 619 PDDAWWR--RY 627 (789)
Q Consensus 619 ~d~~~~r--R~ 627 (789)
T Consensus 284 LDpAllRpGRF 294 (390)
T PRK03992 284 LDPALLRPGRF 294 (390)
T ss_pred CCHHHHCCCCC
T ss_conf 59777547765