HHsearch alignment for GI: 254781225 and conserved domain: TIGR01846
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=91.12 E-value=0.16 Score=27.87 Aligned_cols=47 Identities=30% Similarity=0.347 Sum_probs=32.2
Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCHHHHHH
Q ss_conf 759874337999970788625789999999723300-03442676420
Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQ 540 (789)
Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~~~~~~ 540 (789)
T Consensus 484 l~L~I~~Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLVDG~DLA~ 531 (703)
T TIGR01846 484 LSLDIKPGEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLVDGVDLAI 531 (703)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 687657865799872789867899999886148888747770300010