HHsearch alignment for GI: 254781225 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.41 E-value=0.16 Score=27.78 Aligned_cols=92 Identities=12% Similarity=0.191 Sum_probs=63.7
Q ss_pred EECCC-EE--ECCCCCCCCCCHHHHCCEEC-----CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 60793-79--74388855898655010013-----788887579478999998887999999999999999975987433
Q gi|254781225|r 430 GEQDG-IL--DLETGQKVKPTKELYITKST-----GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501 (789)
Q Consensus 430 ~~~NG-v~--dl~t~~~~~~~~~~~~t~~~-----~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~ 501 (789)
T Consensus 87 Ac~~~eTvs~tIRKpS~~~~sL~dy~~~G~F~~ar~~~~~~~~~~~d~~~~L~el~~~g~~~~Fl~~Ai--------~~~ 158 (328)
T TIGR02788 87 ACENDETVSITIRKPSLVDLSLDDYEEKGFFDTARAVVVPASTELSDKDEELLELLDAGDIKEFLRLAI--------ASR 158 (328)
T ss_pred CCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH--------HCC
T ss_conf 758988589999526444554799962798544777631443443468999999986288879999998--------738
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 7999970788625789999999723300
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
T Consensus 159 knIii~GGTgSGKTTf~kal~~~IP~~E 186 (328)
T TIGR02788 159 KNIIISGGTGSGKTTFLKALVKEIPKDE 186 (328)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 9199990689718999999973276225