HHsearch alignment for GI: 254781225 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.39 E-value=0.21 Score=27.09 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=23.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
T Consensus 28 ~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p 56 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79989999999995799999999759998