HHsearch alignment for GI: 254781225 and conserved domain: cd03296
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.29 E-value=0.21 Score=27.02 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
T Consensus 26 ~~Ge~~~iiGpSGsGKSTll~~i~Gl~~p 54 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999997799999999769999