Query gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 789
No_of_seqs 322 out of 861
Neff 8.2
Searched_HMMs 39220
Date Mon May 30 07:05:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781225.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07078 hypothetical protein; 100.0 0 0 726.2 41.2 427 305-774 70-499 (510)
2 COG3378 Phage associated DNA p 100.0 0 0 532.5 28.0 347 415-773 139-498 (517)
3 TIGR01613 primase_Cterm phage/ 100.0 0 0 407.2 22.1 302 427-736 1-314 (316)
4 pfam09250 Prim-Pol Bifunctiona 99.9 7.1E-21 1.8E-25 156.4 14.8 140 10-153 1-149 (161)
5 pfam08706 D5_N D5 N terminal l 99.9 1.2E-20 3E-25 154.9 14.1 143 315-478 3-145 (145)
6 cd04859 Prim_Pol Prim_Pol: Pri 99.8 6.8E-20 1.7E-24 149.8 15.0 143 18-171 1-151 (152)
7 pfam08707 PriCT_2 Primase C te 99.2 6.7E-11 1.7E-15 90.1 7.3 61 224-293 13-73 (74)
8 cd00525 AE_Prim_S_like AE_Prim 99.0 2E-09 5.1E-14 80.3 7.5 113 18-149 1-133 (136)
9 COG4983 Uncharacterized conser 99.0 5.1E-10 1.3E-14 84.2 4.1 419 34-517 51-494 (495)
10 pfam05272 VirE Virulence-assoc 98.9 2.1E-08 5.3E-13 73.5 10.6 181 465-663 9-196 (198)
11 pfam01057 Parvo_NS1 Parvovirus 98.2 3.3E-05 8.5E-10 52.3 11.0 193 445-661 61-261 (271)
12 pfam04735 Baculo_helicase Bacu 98.1 3.5E-06 8.9E-11 58.8 5.1 139 490-639 867-1007(1173)
13 COG5545 Predicted P-loop ATPas 98.1 3.8E-05 9.6E-10 51.9 10.0 182 465-672 159-347 (517)
14 pfam00519 PPV_E1_C Papillomavi 98.0 0.00012 3E-09 48.7 10.2 156 463-637 228-385 (432)
15 pfam03288 Pox_D5 Poxvirus D5 p 97.5 0.00016 4E-09 47.8 5.1 54 689-745 1-55 (88)
16 PRK03992 proteasome-activating 97.5 0.0053 1.3E-07 37.7 12.5 209 411-627 52-294 (390)
17 smart00763 AAA_PrkA PrkA AAA d 97.2 0.0011 2.9E-08 42.1 6.3 55 475-529 52-106 (361)
18 KOG3712 consensus 97.2 0.0009 2.3E-08 42.8 5.7 11 649-659 573-583 (736)
19 pfam05496 RuvB_N Holliday junc 97.0 0.026 6.6E-07 33.1 11.8 145 473-628 23-171 (234)
20 pfam08298 AAA_PrkA PrkA AAA do 96.7 0.0043 1.1E-07 38.3 5.5 55 475-529 59-113 (358)
21 PRK00440 rfc replication facto 96.5 0.01 2.6E-07 35.7 6.6 135 472-635 14-160 (318)
22 pfam02257 RFX_DNA_binding RFX 96.3 0.012 3E-07 35.3 6.0 65 693-762 8-72 (73)
23 KOG0743 consensus 96.3 0.02 5.1E-07 33.8 6.9 87 480-573 215-301 (457)
24 TIGR02673 FtsE cell division A 96.2 0.0048 1.2E-07 37.9 3.3 79 500-585 27-110 (215)
25 PRK04195 replication factor C 96.1 0.028 7.1E-07 32.9 7.0 142 472-636 12-162 (403)
26 PRK00411 cdc6 cell division co 96.1 0.095 2.4E-06 29.3 15.5 273 479-772 36-374 (394)
27 pfam00004 AAA ATPase family as 96.1 0.0042 1.1E-07 38.4 2.5 123 504-633 1-130 (131)
28 TIGR00960 3a0501s02 Type II (G 95.9 0.0065 1.7E-07 37.1 3.0 27 500-526 28-54 (216)
29 cd00009 AAA The AAA+ (ATPases 95.9 0.012 3E-07 35.3 4.1 122 500-632 18-149 (151)
30 pfam07728 AAA_5 AAA domain (dy 95.8 0.015 3.8E-07 34.7 4.3 123 504-627 2-139 (139)
31 PRK13531 regulatory ATPase Rav 95.7 0.065 1.7E-06 30.4 7.5 48 577-632 387-434 (498)
32 COG1222 RPT1 ATP-dependent 26S 95.7 0.15 3.8E-06 28.1 10.9 208 410-625 70-309 (406)
33 PRK13341 recombination factor 95.3 0.016 4.2E-07 34.4 3.2 41 133-175 136-178 (726)
34 pfam06431 Polyoma_lg_T_C Polyo 94.6 0.3 7.6E-06 26.0 9.6 179 485-692 140-341 (417)
35 PRK13900 type IV secretion sys 94.6 0.17 4.4E-06 27.6 6.7 85 435-527 102-186 (332)
36 TIGR02788 VirB11 P-type DNA tr 94.4 0.16 4.1E-06 27.8 6.3 92 430-529 87-186 (328)
37 TIGR01242 26Sp45 26S proteasom 94.1 0.062 1.6E-06 30.6 3.6 221 410-635 41-295 (364)
38 COG2884 FtsE Predicted ATPase 93.9 0.054 1.4E-06 30.9 3.1 28 498-525 25-52 (223)
39 TIGR02982 heterocyst_DevA ABC 93.8 0.054 1.4E-06 31.0 2.9 17 427-443 203-219 (220)
40 COG0419 SbcC ATPase involved i 93.8 0.02 5.1E-07 33.8 0.7 16 46-61 19-34 (908)
41 PRK12402 replication factor C 93.7 0.26 6.7E-06 26.4 6.3 49 472-526 13-61 (337)
42 TIGR03346 chaperone_ClpB ATP-d 93.6 0.47 1.2E-05 24.7 10.5 155 445-612 530-717 (852)
43 COG1136 SalX ABC-type antimicr 93.6 0.057 1.5E-06 30.8 2.7 28 499-526 29-56 (226)
44 TIGR03420 DnaA_homol_Hda DnaA 93.5 0.39 9.9E-06 25.3 6.8 94 457-568 5-100 (226)
45 PRK10865 protein disaggregatio 93.4 0.51 1.3E-05 24.5 9.9 155 445-612 533-720 (857)
46 PRK10733 hflB ATP-dependent me 93.3 0.52 1.3E-05 24.4 8.2 166 454-633 145-322 (644)
47 PRK00080 ruvB Holliday junctio 93.1 0.48 1.2E-05 24.7 6.8 141 467-629 22-173 (328)
48 KOG1970 consensus 93.0 0.28 7.1E-06 26.2 5.4 22 454-476 258-279 (634)
49 cd03278 ABC_SMC_barmotin Barmo 92.8 0.12 3.1E-06 28.6 3.5 26 503-528 24-49 (197)
50 pfam07726 AAA_3 ATPase family 92.8 0.094 2.4E-06 29.4 2.8 120 504-629 2-131 (131)
51 PRK07261 topology modulation p 92.8 0.11 2.8E-06 28.9 3.2 25 504-528 3-27 (171)
52 COG3839 MalK ABC-type sugar tr 92.7 0.082 2.1E-06 29.7 2.4 15 126-140 22-37 (338)
53 cd03239 ABC_SMC_head The struc 92.7 0.18 4.5E-06 27.5 4.1 31 501-531 22-52 (178)
54 TIGR03345 VI_ClpV1 type VI sec 92.7 0.63 1.6E-05 23.9 10.3 151 449-612 535-718 (852)
55 pfam05621 TniB Bacterial TniB 92.6 0.18 4.7E-06 27.4 4.1 50 478-527 23-87 (302)
56 TIGR02881 spore_V_K stage V sp 92.6 0.23 5.8E-06 26.8 4.5 158 471-639 3-178 (261)
57 TIGR02211 LolD_lipo_ex lipopro 92.6 0.082 2.1E-06 29.8 2.3 22 503-524 33-54 (221)
58 PRK07429 phosphoribulokinase; 92.5 0.17 4.5E-06 27.6 3.9 42 481-522 265-310 (331)
59 PRK08118 topology modulation p 92.5 0.13 3.2E-06 28.5 3.2 98 504-627 4-101 (167)
60 cd03292 ABC_FtsE_transporter F 92.4 0.1 2.6E-06 29.2 2.6 29 499-527 25-53 (214)
61 pfam00437 GSPII_E Type II/IV s 92.3 0.26 6.6E-06 26.4 4.6 41 479-527 125-165 (283)
62 PRK05480 uridine kinase; Provi 92.3 0.19 4.9E-06 27.3 3.9 36 499-534 4-39 (209)
63 TIGR00602 rad24 checkpoint pro 92.3 0.21 5.4E-06 27.0 4.1 21 455-476 291-311 (670)
64 cd01130 VirB11-like_ATPase Typ 92.1 0.29 7.4E-06 26.1 4.7 48 471-526 3-50 (186)
65 TIGR03608 L_ocin_972_ABC putat 92.1 0.12 3E-06 28.7 2.6 29 499-527 22-50 (206)
66 PRK13851 type IV secretion sys 91.9 0.41 1E-05 25.1 5.2 49 471-527 140-188 (343)
67 TIGR02315 ABC_phnC phosphonate 91.8 0.15 3.8E-06 28.0 2.9 25 502-526 29-53 (253)
68 PRK00091 miaA tRNA delta(2)-is 91.8 0.14 3.5E-06 28.3 2.7 73 501-576 4-76 (304)
69 cd03260 ABC_PstB_phosphate_tra 91.7 0.18 4.5E-06 27.5 3.2 28 499-526 24-51 (227)
70 PRK08939 primosomal protein Dn 91.7 0.61 1.6E-05 23.9 5.9 138 429-569 83-229 (306)
71 PRK04220 2-phosphoglycerate ki 91.7 0.76 1.9E-05 23.3 6.4 51 485-535 76-126 (306)
72 pfam01078 Mg_chelatase Magnesi 91.7 0.68 1.7E-05 23.6 6.1 131 474-615 3-161 (207)
73 TIGR00972 3a0107s01c2 phosphat 91.6 0.21 5.4E-06 27.0 3.4 25 500-524 26-50 (248)
74 KOG0651 consensus 91.5 0.3 7.8E-06 26.0 4.2 131 497-632 162-302 (388)
75 TIGR01186 proV glycine betaine 91.5 0.17 4.4E-06 27.6 2.9 10 131-140 18-27 (372)
76 TIGR00455 apsK adenylylsulfate 91.4 0.19 4.8E-06 27.4 3.0 29 501-529 19-47 (187)
77 cd03256 ABC_PhnC_transporter A 91.4 0.15 3.9E-06 28.0 2.5 29 499-527 25-53 (241)
78 pfam05049 IIGP Interferon-indu 91.3 0.39 9.9E-06 25.3 4.6 14 79-92 22-35 (375)
79 cd03237 ABC_RNaseL_inhibitor_d 91.3 0.17 4.4E-06 27.6 2.7 33 496-528 20-52 (246)
80 PRK10744 phosphate transporter 91.3 0.5 1.3E-05 24.6 5.1 29 499-527 34-62 (257)
81 TIGR00968 3a0106s01 sulfate AB 91.3 0.16 4.1E-06 27.8 2.5 26 499-524 24-49 (241)
82 cd03298 ABC_ThiQ_thiamine_tran 91.3 0.15 3.9E-06 27.9 2.4 28 500-527 23-50 (211)
83 pfam00910 RNA_helicase RNA hel 91.2 0.33 8.4E-06 25.7 4.1 101 504-612 1-105 (105)
84 cd03262 ABC_HisP_GlnQ_permease 91.2 0.17 4.3E-06 27.7 2.6 28 499-526 24-51 (213)
85 PRK11545 gntK gluconate kinase 91.1 0.31 8E-06 25.9 3.9 33 495-527 2-34 (177)
86 PRK10646 putative ATPase; Prov 91.1 0.76 1.9E-05 23.3 5.9 59 478-540 9-67 (153)
87 TIGR01846 type_I_sec_HlyB type 91.1 0.16 4E-06 27.9 2.4 47 494-540 484-531 (703)
88 pfam00493 MCM MCM2/3/5 family. 91.1 0.94 2.4E-05 22.7 9.8 161 468-630 14-201 (327)
89 TIGR01277 thiQ thiamine ABC tr 91.0 0.17 4.4E-06 27.6 2.5 23 505-527 28-50 (213)
90 COG2255 RuvB Holliday junction 91.0 0.97 2.5E-05 22.6 6.3 127 472-612 24-160 (332)
91 pfam00485 PRK Phosphoribulokin 90.8 0.22 5.7E-06 26.9 2.9 29 504-532 2-30 (196)
92 CHL00176 ftsH cell division pr 90.7 1 2.6E-05 22.5 8.4 165 454-633 170-347 (631)
93 cd00227 CPT Chloramphenicol (C 90.6 0.37 9.4E-06 25.4 3.9 34 502-535 3-37 (175)
94 COG0324 MiaA tRNA delta(2)-iso 90.5 0.83 2.1E-05 23.1 5.6 70 503-575 5-74 (308)
95 PRK10247 putative ABC transpor 90.5 0.24 6.1E-06 26.7 2.8 29 499-527 31-59 (225)
96 cd03293 ABC_NrtD_SsuB_transpor 90.4 0.21 5.3E-06 27.1 2.4 29 499-527 28-56 (220)
97 pfam08800 VirE_N VirE N-termin 90.4 0.76 1.9E-05 23.3 5.3 46 63-108 31-77 (136)
98 pfam00503 G-alpha G-protein al 90.4 0.29 7.4E-06 26.1 3.2 47 481-527 295-343 (350)
99 COG0802 Predicted ATPase or ki 90.3 0.72 1.8E-05 23.5 5.2 60 477-540 5-65 (149)
100 cd03296 ABC_CysA_sulfate_impor 90.3 0.21 5.4E-06 27.0 2.4 29 499-527 26-54 (239)
101 PRK10535 macrolide transporter 90.2 0.35 8.8E-06 25.6 3.5 13 689-701 565-577 (648)
102 PRK13648 cbiO cobalt transport 90.2 0.25 6.5E-06 26.5 2.7 29 500-528 34-62 (269)
103 PRK13407 bchI magnesium chelat 90.2 0.95 2.4E-05 22.7 5.7 126 503-634 31-201 (334)
104 cd03299 ABC_ModC_like Archeal 90.1 0.23 5.8E-06 26.8 2.5 29 499-527 23-51 (235)
105 COG1116 TauB ABC-type nitrate/ 90.1 0.22 5.7E-06 26.9 2.4 22 503-524 31-52 (248)
106 cd03226 ABC_cobalt_CbiO_domain 90.1 0.26 6.5E-06 26.5 2.7 30 499-528 24-53 (205)
107 cd03229 ABC_Class3 This class 90.1 0.24 6.1E-06 26.7 2.5 29 499-527 24-52 (178)
108 PRK11248 tauB taurine transpor 90.0 0.23 5.9E-06 26.8 2.5 23 503-525 29-51 (255)
109 TIGR00618 sbcc exonuclease Sbc 90.0 0.31 7.8E-06 26.0 3.1 16 460-475 534-549 (1063)
110 PHA02244 ATPase-like protein 90.0 1.1 2.7E-05 22.4 5.8 130 501-634 119-260 (383)
111 cd03234 ABCG_White The White s 90.0 0.19 5E-06 27.3 2.0 30 498-527 30-59 (226)
112 PRK08903 hypothetical protein; 89.9 0.63 1.6E-05 23.9 4.6 138 457-628 8-147 (227)
113 PRK09270 frcK putative fructos 89.9 1.1 2.9E-05 22.2 5.9 33 497-529 30-62 (230)
114 PRK13646 cbiO cobalt transport 89.9 0.29 7.3E-06 26.1 2.9 30 499-528 31-60 (286)
115 PRK06893 DNA replication initi 89.9 1.1 2.9E-05 22.2 5.9 87 467-568 13-101 (229)
116 PRK13540 cytochrome c biogenes 89.9 0.25 6.4E-06 26.5 2.5 29 500-528 26-54 (200)
117 cd03257 ABC_NikE_OppD_transpor 89.8 0.26 6.6E-06 26.4 2.6 29 499-527 29-57 (228)
118 cd03261 ABC_Org_Solvent_Resist 89.8 0.25 6.5E-06 26.5 2.5 28 499-526 24-51 (235)
119 cd03300 ABC_PotA_N PotA is an 89.8 0.25 6.3E-06 26.6 2.4 27 500-526 25-51 (232)
120 cd03231 ABC_CcmA_heme_exporter 89.8 0.29 7.3E-06 26.1 2.8 29 500-528 25-53 (201)
121 pfam09079 Cdc6_C CDC6, C termi 89.7 1.1 2.9E-05 22.2 5.8 64 705-772 12-75 (85)
122 cd03297 ABC_ModC_molybdenum_tr 89.7 0.26 6.7E-06 26.4 2.5 25 501-525 23-47 (214)
123 cd00066 G-alpha G protein alph 89.7 0.35 9E-06 25.5 3.2 19 509-527 295-313 (317)
124 COG0470 HolB ATPase involved i 89.6 0.54 1.4E-05 24.3 4.1 129 486-634 10-167 (325)
125 smart00275 G_alpha G protein a 89.6 0.35 9E-06 25.5 3.1 47 480-526 287-335 (342)
126 PRK13644 cbiO cobalt transport 89.6 0.3 7.6E-06 26.0 2.7 24 502-525 29-52 (274)
127 PRK10771 thiQ thiamine transpo 89.6 0.29 7.4E-06 26.1 2.7 31 498-528 22-52 (233)
128 PRK13833 conjugal transfer pro 89.6 1 2.6E-05 22.5 5.5 49 469-525 120-168 (323)
129 pfam07931 CPT Chloramphenicol 89.6 0.45 1.1E-05 24.9 3.7 34 502-535 2-36 (174)
130 TIGR00929 VirB4_CagE type IV s 89.6 0.32 8.1E-06 25.9 2.9 26 505-530 520-545 (931)
131 cd03249 ABC_MTABC3_MDL1_MDL2 M 89.6 0.31 7.8E-06 26.0 2.8 26 501-526 29-54 (238)
132 PRK13634 cbiO cobalt transport 89.6 0.26 6.6E-06 26.4 2.4 29 499-527 18-46 (276)
133 PRK10584 putative ABC transpor 89.5 0.26 6.5E-06 26.5 2.4 30 499-528 34-63 (228)
134 PRK13651 cobalt transporter AT 89.5 0.28 7.1E-06 26.2 2.5 27 501-527 33-59 (304)
135 PRK05642 DNA replication initi 89.4 1.3 3.3E-05 21.8 6.7 97 457-568 9-107 (234)
136 cd03255 ABC_MJ0796_Lo1CDE_FtsE 89.3 0.28 7.2E-06 26.2 2.4 30 499-528 28-57 (218)
137 cd03295 ABC_OpuCA_Osmoprotecti 89.3 0.28 7.3E-06 26.2 2.5 28 499-526 25-52 (242)
138 TIGR01087 murD UDP-N-acetylmur 89.3 0.28 7E-06 26.3 2.4 50 466-525 80-132 (476)
139 cd02023 UMPK Uridine monophosp 89.3 0.33 8.3E-06 25.8 2.8 31 504-534 2-32 (198)
140 cd03254 ABCC_Glucan_exporter_l 89.3 0.3 7.5E-06 26.1 2.5 27 500-526 28-54 (229)
141 COG2766 PrkA Putative Ser prot 89.3 0.73 1.9E-05 23.4 4.5 13 103-115 104-116 (649)
142 PRK01156 chromosome segregatio 89.3 0.53 1.3E-05 24.4 3.8 10 51-60 22-31 (895)
143 cd04104 p47_IIGP_like p47 (47- 89.2 0.26 6.5E-06 26.5 2.2 22 503-524 3-24 (197)
144 PRK13541 cytochrome c biogenes 89.2 0.29 7.5E-06 26.1 2.5 29 499-527 24-52 (195)
145 PRK11629 lolD lipoprotein tran 89.2 0.3 7.5E-06 26.1 2.5 29 499-527 33-61 (233)
146 COG1125 OpuBA ABC-type proline 89.2 0.35 8.8E-06 25.6 2.8 14 226-239 71-84 (309)
147 PRK13641 cbiO cobalt transport 89.2 0.28 7.2E-06 26.2 2.4 29 499-527 31-59 (286)
148 cd02026 PRK Phosphoribulokinas 89.2 0.32 8.3E-06 25.8 2.7 160 505-699 3-165 (273)
149 PRK10908 cell division protein 89.1 0.29 7.3E-06 26.1 2.4 29 499-527 26-54 (222)
150 cd03301 ABC_MalK_N The N-termi 89.1 0.31 7.8E-06 26.0 2.5 28 499-526 24-51 (213)
151 cd03227 ABC_Class2 ABC-type Cl 89.1 0.41 1E-05 25.1 3.2 26 501-526 21-46 (162)
152 cd03233 ABC_PDR_domain1 The pl 89.1 0.26 6.7E-06 26.4 2.2 31 498-528 30-60 (202)
153 PRK13538 cytochrome c biogenes 89.1 0.34 8.7E-06 25.6 2.7 30 499-528 25-54 (204)
154 cd03263 ABC_subfamily_A The AB 89.1 0.31 8E-06 25.9 2.5 29 499-527 26-54 (220)
155 PRK09493 glnQ glutamine ABC tr 89.0 0.33 8.3E-06 25.8 2.6 27 500-526 26-52 (240)
156 COG0444 DppD ABC-type dipeptid 89.0 0.52 1.3E-05 24.5 3.6 13 224-236 156-168 (316)
157 PRK13637 cbiO cobalt transport 89.0 0.3 7.8E-06 26.0 2.4 29 499-527 31-59 (287)
158 PRK06217 hypothetical protein; 89.0 0.42 1.1E-05 25.0 3.2 26 504-529 4-29 (185)
159 cd03247 ABCC_cytochrome_bd The 89.0 0.39 9.9E-06 25.3 3.0 29 500-528 27-55 (178)
160 PRK13544 consensus 89.0 0.35 8.9E-06 25.6 2.7 30 499-528 25-54 (208)
161 cd03289 ABCC_CFTR2 The CFTR su 88.9 0.41 1E-05 25.1 3.1 26 501-526 30-55 (275)
162 cd03248 ABCC_TAP TAP, the Tran 88.9 0.34 8.6E-06 25.7 2.6 28 499-526 38-65 (226)
163 cd03251 ABCC_MsbA MsbA is an e 88.9 0.33 8.3E-06 25.8 2.5 26 501-526 28-53 (234)
164 cd03225 ABC_cobalt_CbiO_domain 88.9 0.38 9.8E-06 25.3 2.9 30 499-528 25-54 (211)
165 TIGR01420 pilT_fam twitching m 88.9 0.33 8.4E-06 25.8 2.5 24 215-239 79-102 (350)
166 cd03294 ABC_Pro_Gly_Bertaine T 88.9 0.31 8E-06 25.9 2.4 27 500-526 49-75 (269)
167 PRK13643 cbiO cobalt transport 88.9 0.32 8.3E-06 25.8 2.5 29 499-527 30-58 (288)
168 COG4619 ABC-type uncharacteriz 88.8 0.37 9.5E-06 25.4 2.8 27 501-527 29-55 (223)
169 COG0714 MoxR-like ATPases [Gen 88.8 1.3 3.4E-05 21.7 5.6 145 469-630 18-183 (329)
170 cd03246 ABCC_Protease_Secretio 88.8 0.34 8.7E-06 25.7 2.6 29 499-527 26-54 (173)
171 cd03228 ABCC_MRP_Like The MRP 88.8 0.34 8.6E-06 25.7 2.5 29 499-527 26-54 (171)
172 PRK10846 bifunctional folylpol 88.7 1.3 3.2E-05 21.9 5.4 10 80-89 34-43 (416)
173 cd03236 ABC_RNaseL_inhibitor_d 88.7 0.33 8.4E-06 25.7 2.5 26 501-526 26-51 (255)
174 PRK11701 phnK phosphonates tra 88.7 0.35 8.9E-06 25.6 2.5 27 501-527 32-58 (258)
175 PRK13635 cbiO cobalt transport 88.7 0.36 9.1E-06 25.5 2.6 25 502-526 34-58 (279)
176 PRK13633 cobalt transporter AT 88.6 0.36 9.1E-06 25.5 2.5 24 502-525 38-61 (281)
177 PRK13649 cbiO cobalt transport 88.5 0.34 8.8E-06 25.6 2.5 28 499-526 31-58 (280)
178 PRK13543 cytochrome c biogenes 88.5 0.36 9.3E-06 25.5 2.6 29 500-528 36-64 (214)
179 TIGR02173 cyt_kin_arch cytidyl 88.5 0.72 1.8E-05 23.5 4.1 101 503-618 2-107 (173)
180 cd03253 ABCC_ATM1_transporter 88.5 0.33 8.5E-06 25.7 2.3 24 502-525 28-51 (236)
181 cd03235 ABC_Metallic_Cations A 88.5 0.37 9.4E-06 25.4 2.6 29 499-527 23-51 (213)
182 cd03369 ABCC_NFT1 Domain 2 of 88.5 0.51 1.3E-05 24.5 3.3 28 500-527 33-60 (207)
183 pfam07724 AAA_2 AAA domain (Cd 88.5 1.2 3.1E-05 22.0 5.2 108 501-612 3-125 (168)
184 PRK13636 cbiO cobalt transport 88.4 0.37 9.4E-06 25.4 2.5 26 501-526 32-57 (285)
185 COG1123 ATPase components of v 88.4 0.7 1.8E-05 23.6 3.9 29 499-527 315-343 (539)
186 PRK13548 hmuV hemin importer A 88.4 0.38 9.6E-06 25.3 2.6 29 500-528 27-55 (257)
187 COG3911 Predicted ATPase [Gene 88.3 0.52 1.3E-05 24.4 3.3 25 500-524 8-32 (183)
188 PRK09984 phosphonate/organopho 88.3 0.39 9.8E-06 25.3 2.6 26 500-525 29-54 (262)
189 PRK13639 cbiO cobalt transport 88.3 0.38 9.7E-06 25.3 2.6 28 500-527 27-54 (275)
190 TIGR00955 3a01204 Pigment prec 88.3 0.47 1.2E-05 24.7 3.0 14 225-238 205-220 (671)
191 PRK10789 putative multidrug tr 88.3 0.57 1.4E-05 24.2 3.4 32 498-529 338-369 (569)
192 cd03244 ABCC_MRP_domain2 Domai 88.2 0.38 9.7E-06 25.3 2.5 28 500-527 29-56 (221)
193 PRK11231 fecE iron-dicitrate t 88.2 0.41 1.1E-05 25.1 2.7 30 499-528 26-55 (255)
194 PRK10851 sulfate/thiosulfate t 88.1 0.38 9.6E-06 25.4 2.4 14 605-618 321-334 (352)
195 pfam06414 Zeta_toxin Zeta toxi 88.1 0.74 1.9E-05 23.4 3.9 31 499-529 10-40 (191)
196 pfam02367 UPF0079 Uncharacteri 88.1 0.61 1.6E-05 23.9 3.5 45 493-537 7-52 (123)
197 COG0563 Adk Adenylate kinase a 88.1 0.52 1.3E-05 24.4 3.1 41 674-718 133-173 (178)
198 PRK13640 cbiO cobalt transport 88.0 0.42 1.1E-05 25.0 2.6 28 500-527 33-60 (283)
199 PRK11247 ssuB aliphatic sulfon 88.0 0.39 1E-05 25.2 2.4 26 501-526 38-63 (257)
200 PRK05291 trmE tRNA modificatio 88.0 1.6 4.1E-05 21.2 5.8 43 481-523 195-238 (445)
201 PRK13650 cbiO cobalt transport 88.0 0.41 1.1E-05 25.1 2.6 25 502-526 31-55 (276)
202 PRK06762 hypothetical protein; 87.9 0.64 1.6E-05 23.8 3.5 28 501-528 2-29 (166)
203 PRK10869 recombination and rep 87.9 0.55 1.4E-05 24.3 3.2 136 428-587 385-527 (553)
204 cd03245 ABCC_bacteriocin_expor 87.9 0.43 1.1E-05 25.0 2.6 27 501-527 30-56 (220)
205 cd03290 ABCC_SUR1_N The SUR do 87.9 0.43 1.1E-05 25.0 2.6 28 500-527 26-53 (218)
206 PRK07667 uridine kinase; Provi 87.9 0.7 1.8E-05 23.6 3.7 32 498-529 10-42 (190)
207 KOG0728 consensus 87.9 1.6 4.2E-05 21.1 9.0 121 498-626 178-306 (404)
208 COG3840 ThiQ ABC-type thiamine 87.8 0.5 1.3E-05 24.6 2.9 23 502-524 26-48 (231)
209 cd03291 ABCC_CFTR1 The CFTR su 87.8 0.41 1E-05 25.1 2.4 24 502-525 64-87 (282)
210 cd03252 ABCC_Hemolysin The ABC 87.8 0.41 1E-05 25.1 2.4 25 502-526 29-53 (237)
211 cd03258 ABC_MetN_methionine_tr 87.7 0.37 9.5E-06 25.4 2.2 25 501-525 31-55 (233)
212 TIGR03258 PhnT 2-aminoethylpho 87.7 0.41 1E-05 25.1 2.4 10 130-139 29-38 (362)
213 PRK13631 cbiO cobalt transport 87.7 0.45 1.2E-05 24.8 2.6 29 499-527 50-78 (320)
214 PRK13894 conjugal transfer ATP 87.6 1.7 4.3E-05 21.0 5.7 48 470-525 126-173 (320)
215 PRK13645 cbiO cobalt transport 87.6 0.44 1.1E-05 24.9 2.5 29 499-527 35-63 (289)
216 PRK10790 putative multidrug tr 87.6 0.67 1.7E-05 23.7 3.4 31 498-528 364-394 (593)
217 PRK10522 multidrug transporter 87.6 0.41 1E-05 25.1 2.3 31 498-528 346-376 (547)
218 pfam06048 DUF927 Domain of unk 87.6 1.7 4.3E-05 21.0 10.9 119 458-584 146-267 (284)
219 cd03224 ABC_TM1139_LivF_branch 87.6 0.44 1.1E-05 24.9 2.5 29 500-528 25-53 (222)
220 cd00267 ABC_ATPase ABC (ATP-bi 87.6 0.43 1.1E-05 25.0 2.4 27 500-526 24-50 (157)
221 TIGR02928 TIGR02928 orc1/cdc6 87.6 1.7 4.4E-05 21.0 5.6 284 455-765 7-378 (383)
222 PRK11831 putative ABC transpor 87.5 0.43 1.1E-05 25.0 2.4 26 501-526 34-59 (269)
223 cd03223 ABCD_peroxisomal_ALDP 87.5 0.36 9.1E-06 25.5 2.0 27 499-525 25-51 (166)
224 cd03214 ABC_Iron-Siderophores_ 87.5 0.46 1.2E-05 24.8 2.6 29 499-527 23-51 (180)
225 PRK09536 btuD corrinoid ABC tr 87.5 0.45 1.1E-05 24.9 2.5 50 502-563 265-314 (409)
226 PRK13652 cbiO cobalt transport 87.5 0.43 1.1E-05 25.0 2.4 27 500-526 29-55 (277)
227 COG1660 Predicted P-loop-conta 87.4 1 2.5E-05 22.6 4.2 17 502-518 243-260 (286)
228 TIGR01448 recD_rel helicase, R 87.3 0.64 1.6E-05 23.8 3.2 82 499-600 363-444 (769)
229 COG1126 GlnQ ABC-type polar am 87.3 0.47 1.2E-05 24.7 2.5 12 465-476 228-239 (240)
230 COG1121 ZnuC ABC-type Mn/Zn tr 87.3 0.49 1.3E-05 24.6 2.6 29 500-528 29-57 (254)
231 PRK10619 histidine/lysine/argi 87.2 0.48 1.2E-05 24.7 2.5 25 501-525 31-55 (257)
232 PRK10253 iron-enterobactin tra 87.2 0.45 1.2E-05 24.8 2.4 29 499-527 31-59 (265)
233 TIGR03263 guanyl_kin guanylate 87.2 0.71 1.8E-05 23.5 3.4 27 502-528 2-28 (180)
234 PRK09544 znuC high-affinity zi 87.2 0.49 1.3E-05 24.6 2.6 28 500-527 29-56 (251)
235 PRK10575 iron-hydroxamate tran 87.2 0.51 1.3E-05 24.5 2.6 28 500-527 36-63 (265)
236 PRK11264 putative amino-acid A 87.2 0.5 1.3E-05 24.5 2.6 22 503-524 29-50 (248)
237 PRK13547 hmuV hemin importer A 87.1 0.47 1.2E-05 24.7 2.5 27 500-526 26-52 (273)
238 cd03288 ABCC_SUR2 The SUR doma 87.1 0.57 1.5E-05 24.2 2.9 14 508-521 54-67 (257)
239 PRK11650 ugpC glycerol-3-phosp 87.1 0.46 1.2E-05 24.8 2.4 10 130-139 28-37 (358)
240 CHL00095 clpC Clp protease ATP 87.1 1.8 4.6E-05 20.8 9.8 164 445-612 474-661 (823)
241 PRK13642 cbiO cobalt transport 87.0 0.49 1.3E-05 24.6 2.5 27 501-527 33-59 (277)
242 PRK13657 cyclic beta-1,2-gluca 87.0 0.68 1.7E-05 23.6 3.2 30 499-528 359-388 (585)
243 PRK10078 ribose 1,5-bisphospho 87.0 0.67 1.7E-05 23.7 3.1 26 502-527 3-28 (184)
244 PRK11124 artP arginine transpo 87.0 0.52 1.3E-05 24.4 2.6 25 501-525 28-52 (242)
245 cd03250 ABCC_MRP_domain1 Domai 86.9 0.44 1.1E-05 24.9 2.2 26 500-525 30-55 (204)
246 cd03213 ABCG_EPDR ABCG transpo 86.9 0.4 1E-05 25.2 2.0 28 498-525 32-59 (194)
247 COG1120 FepC ABC-type cobalami 86.9 0.5 1.3E-05 24.6 2.5 30 499-528 26-55 (258)
248 pfam00625 Guanylate_kin Guanyl 86.9 0.7 1.8E-05 23.6 3.2 56 502-568 2-57 (182)
249 PRK13768 GTPase; Provisional 86.9 0.75 1.9E-05 23.4 3.4 24 503-526 4-27 (253)
250 COG4615 PvdE ABC-type sideroph 86.8 0.64 1.6E-05 23.8 3.0 30 499-528 347-376 (546)
251 PRK11176 lipid transporter ATP 86.8 0.65 1.7E-05 23.8 3.0 31 498-528 365-395 (581)
252 PRK02224 chromosome segregatio 86.8 1.1 2.8E-05 22.3 4.2 11 51-61 22-32 (880)
253 PRK10895 putative ABC transpor 86.7 0.52 1.3E-05 24.4 2.5 29 500-528 28-56 (241)
254 PRK13638 cbiO cobalt transport 86.7 0.57 1.5E-05 24.2 2.7 26 502-527 28-53 (271)
255 COG0464 SpoVK ATPases of the A 86.7 1.5 3.9E-05 21.3 4.8 72 498-569 273-346 (494)
256 pfam08419 consensus 86.6 1.3 3.3E-05 21.8 4.5 40 483-523 57-97 (116)
257 cd03267 ABC_NatA_like Similar 86.6 0.54 1.4E-05 24.3 2.5 30 498-527 44-73 (236)
258 PRK13546 teichoic acids export 86.6 0.52 1.3E-05 24.4 2.4 29 499-527 48-76 (264)
259 cd03222 ABC_RNaseL_inhibitor T 86.6 0.53 1.3E-05 24.4 2.5 30 497-526 21-50 (177)
260 cd03240 ABC_Rad50 The catalyti 86.6 0.67 1.7E-05 23.7 3.0 25 501-525 22-46 (204)
261 COG1117 PstB ABC-type phosphat 86.6 0.73 1.9E-05 23.5 3.2 30 496-525 28-57 (253)
262 PRK08084 DNA replication initi 86.5 1.9 4.9E-05 20.6 5.4 133 467-627 19-156 (235)
263 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 86.5 0.56 1.4E-05 24.2 2.6 28 500-527 47-74 (224)
264 TIGR03411 urea_trans_UrtD urea 86.5 0.54 1.4E-05 24.3 2.5 28 500-527 27-54 (242)
265 TIGR02868 CydC ABC transporter 86.4 0.78 2E-05 23.3 3.2 25 503-527 389-413 (566)
266 PRK11614 livF leucine/isoleuci 86.4 0.55 1.4E-05 24.3 2.5 28 500-527 30-57 (237)
267 cd03221 ABCF_EF-3 ABCF_EF-3 E 86.4 0.59 1.5E-05 24.1 2.6 67 499-570 24-100 (144)
268 TIGR01189 ccmA heme ABC export 86.4 0.69 1.8E-05 23.6 3.0 11 245-255 92-102 (204)
269 cd01850 CDC_Septin CDC/Septin. 86.3 0.59 1.5E-05 24.1 2.6 29 497-525 112-141 (276)
270 cd03232 ABC_PDR_domain2 The pl 86.3 0.56 1.4E-05 24.2 2.5 26 498-523 30-55 (192)
271 cd03259 ABC_Carb_Solutes_like 86.3 0.58 1.5E-05 24.1 2.5 29 499-527 24-52 (213)
272 cd03285 ABC_MSH2_euk MutS2 hom 86.3 1 2.6E-05 22.4 3.8 26 499-524 28-53 (222)
273 PRK06851 hypothetical protein; 86.3 1.6 4.2E-05 21.1 4.8 48 470-525 192-239 (368)
274 PRK13542 consensus 86.2 0.58 1.5E-05 24.1 2.5 27 501-527 44-70 (224)
275 cd03269 ABC_putative_ATPase Th 86.2 0.69 1.7E-05 23.6 2.9 30 499-528 24-53 (210)
276 PRK11034 clpA ATP-dependent Cl 86.2 2 5.2E-05 20.5 10.1 152 447-612 425-607 (758)
277 TIGR00958 3a01208 antigen pept 86.1 1.3 3.3E-05 21.8 4.3 65 494-568 552-617 (770)
278 cd03280 ABC_MutS2 MutS2 homolo 86.1 0.99 2.5E-05 22.6 3.7 24 500-523 27-50 (200)
279 cd03217 ABC_FeS_Assembly ABC-t 86.0 0.68 1.7E-05 23.7 2.8 26 499-524 24-49 (200)
280 PRK11432 fbpC ferric transport 86.0 0.56 1.4E-05 24.2 2.3 10 130-139 30-39 (351)
281 PRK11160 cysteine/glutathione 86.0 0.66 1.7E-05 23.7 2.7 30 499-528 365-394 (575)
282 PRK13891 conjugal transfer pro 86.0 1 2.5E-05 22.6 3.6 28 504-531 491-518 (852)
283 PRK05416 hypothetical protein; 86.0 1.2 3E-05 22.1 4.0 58 467-527 211-275 (292)
284 PRK10787 DNA-binding ATP-depen 86.0 2.1 5.3E-05 20.4 6.8 207 451-689 294-538 (784)
285 TIGR03265 PhnT2 putative 2-ami 86.0 0.59 1.5E-05 24.1 2.4 10 130-139 28-37 (353)
286 PRK10261 glutathione transport 85.9 1.1 2.8E-05 22.3 3.8 29 499-527 348-376 (623)
287 cd03264 ABC_drug_resistance_li 85.9 0.6 1.5E-05 24.0 2.4 25 503-527 27-51 (211)
288 cd02025 PanK Pantothenate kina 85.8 0.66 1.7E-05 23.8 2.6 22 506-527 4-25 (220)
289 PRK06761 hypothetical protein; 85.8 0.82 2.1E-05 23.1 3.1 26 502-527 3-28 (281)
290 cd03230 ABC_DR_subfamily_A Thi 85.8 0.65 1.6E-05 23.8 2.6 30 499-528 24-53 (173)
291 PRK11300 livG leucine/isoleuci 85.8 0.62 1.6E-05 23.9 2.5 28 500-527 30-57 (255)
292 cd01853 Toc34_like Toc34-like 85.8 1.6 4E-05 21.3 4.5 146 476-640 8-165 (249)
293 cd03241 ABC_RecN RecN ATPase i 85.8 0.86 2.2E-05 23.0 3.2 29 501-529 21-49 (276)
294 TIGR01192 chvA glucan exporter 85.7 0.68 1.7E-05 23.7 2.7 36 502-537 362-398 (592)
295 TIGR01143 murF UDP-N-acetylmur 85.7 0.79 2E-05 23.2 3.0 21 80-100 71-94 (462)
296 cd03268 ABC_BcrA_bacitracin_re 85.7 0.68 1.7E-05 23.7 2.6 31 499-529 24-54 (208)
297 CHL00131 ycf16 sulfate ABC tra 85.7 0.75 1.9E-05 23.4 2.8 24 500-523 31-54 (252)
298 cd03284 ABC_MutS1 MutS1 homolo 85.6 1.1 2.9E-05 22.2 3.8 25 500-524 29-53 (216)
299 cd03218 ABC_YhbG The ABC trans 85.6 0.64 1.6E-05 23.8 2.5 26 502-527 27-52 (232)
300 cd03281 ABC_MSH5_euk MutS5 hom 85.6 1 2.6E-05 22.4 3.5 26 499-524 27-52 (213)
301 COG3910 Predicted ATPase [Gene 85.6 0.72 1.8E-05 23.5 2.7 24 503-526 39-62 (233)
302 cd03265 ABC_DrrA DrrA is the A 85.6 0.69 1.8E-05 23.6 2.6 31 499-529 24-54 (220)
303 PRK00139 murE UDP-N-acetylmura 85.5 1.8 4.7E-05 20.8 4.8 87 501-598 364-457 (481)
304 KOG2655 consensus 85.5 0.65 1.7E-05 23.8 2.5 30 497-526 127-157 (366)
305 COG3172 NadR Predicted ATPase/ 85.5 0.9 2.3E-05 22.9 3.2 28 500-527 7-34 (187)
306 TIGR02204 MsbA_rel ABC transpo 85.4 0.61 1.5E-05 24.0 2.3 40 499-538 364-404 (576)
307 cd03266 ABC_NatA_sodium_export 85.3 0.68 1.7E-05 23.7 2.5 30 499-528 29-58 (218)
308 PRK06620 hypothetical protein; 85.3 1.3 3.2E-05 21.9 3.9 49 479-529 24-72 (214)
309 PRK03695 vitamin B12-transport 85.3 0.67 1.7E-05 23.7 2.5 29 498-526 20-48 (245)
310 COG0529 CysC Adenylylsulfate k 85.3 1 2.7E-05 22.4 3.4 27 501-527 23-49 (197)
311 COG0572 Udk Uridine kinase [Nu 85.3 1.1 2.9E-05 22.2 3.6 35 500-534 6-41 (218)
312 TIGR03410 urea_trans_UrtE urea 85.2 0.67 1.7E-05 23.7 2.4 28 500-527 25-52 (230)
313 TIGR02857 CydD ABC transporter 85.2 0.8 2E-05 23.2 2.8 31 499-529 376-406 (570)
314 pfam00735 Septin Septin. Membe 85.1 0.74 1.9E-05 23.4 2.6 31 496-526 109-140 (280)
315 PRK00300 gmk guanylate kinase; 85.1 0.63 1.6E-05 23.9 2.2 67 499-576 5-71 (208)
316 COG1101 PhnK ABC-type uncharac 85.1 0.76 1.9E-05 23.3 2.6 15 126-141 27-41 (263)
317 PRK09580 sufC cysteine desulfu 85.0 0.87 2.2E-05 23.0 2.9 23 502-524 28-50 (248)
318 TIGR00630 uvra excinuclease AB 85.0 0.69 1.8E-05 23.6 2.4 28 498-525 662-690 (956)
319 COG1122 CbiO ABC-type cobalt t 85.0 0.56 1.4E-05 24.2 1.9 30 499-528 28-57 (235)
320 cd03282 ABC_MSH4_euk MutS4 hom 85.0 1.3 3.3E-05 21.8 3.8 26 499-524 27-52 (204)
321 COG0194 Gmk Guanylate kinase [ 85.0 0.95 2.4E-05 22.7 3.1 56 500-568 3-58 (191)
322 pfam03668 ATP_bind_2 P-loop AT 84.9 1.3 3.3E-05 21.8 3.8 60 467-526 205-268 (284)
323 TIGR02203 MsbA_lipidA lipid A 84.9 0.64 1.6E-05 23.8 2.2 60 498-567 385-445 (603)
324 PRK11144 modC molybdate transp 84.9 0.73 1.9E-05 23.4 2.5 21 432-452 196-217 (352)
325 TIGR01526 nadR_NMN_Atrans nico 84.8 1.1 2.8E-05 22.2 3.4 27 499-525 173-199 (346)
326 cd03286 ABC_MSH6_euk MutS6 hom 84.8 1.3 3.3E-05 21.8 3.7 26 499-524 28-53 (218)
327 TIGR03015 pepcterm_ATPase puta 84.7 1.2 3.1E-05 22.0 3.6 29 498-526 40-68 (269)
328 PRK09825 idnK D-gluconate kina 84.6 1.2 3E-05 22.1 3.4 25 502-526 4-28 (176)
329 PRK13539 cytochrome c biogenes 84.6 0.74 1.9E-05 23.4 2.4 27 500-526 27-53 (206)
330 KOG0739 consensus 84.6 1.8 4.6E-05 20.8 4.4 130 493-633 158-299 (439)
331 cd03216 ABC_Carb_Monos_I This 84.6 0.78 2E-05 23.3 2.5 29 500-528 25-53 (163)
332 TIGR00150 TIGR00150 conserved 84.5 2.4 6.1E-05 20.0 5.6 64 477-540 2-68 (147)
333 cd03279 ABC_sbcCD SbcCD and ot 84.5 1.1 2.9E-05 22.2 3.4 25 501-525 28-52 (213)
334 KOG0058 consensus 84.5 0.98 2.5E-05 22.6 3.0 31 499-529 492-522 (716)
335 PRK03839 putative kinase; Prov 84.5 1.2 3E-05 22.1 3.4 25 503-527 2-26 (180)
336 cd01131 PilT Pilus retraction 84.5 1.2 3E-05 22.1 3.4 26 502-527 2-27 (198)
337 PRK10938 putative molybdenum t 84.4 0.77 2E-05 23.3 2.4 26 499-524 284-309 (490)
338 COG2256 MGS1 ATPase related to 84.3 1 2.5E-05 22.6 3.0 12 442-453 383-394 (436)
339 COG0606 Predicted ATPase with 84.3 1.6 4.2E-05 21.1 4.1 147 473-632 178-353 (490)
340 COG3842 PotA ABC-type spermidi 84.3 1 2.5E-05 22.6 3.0 15 429-443 201-215 (352)
341 cd03219 ABC_Mj1267_LivG_branch 84.2 0.81 2.1E-05 23.2 2.5 29 499-527 24-52 (236)
342 PRK10762 D-ribose transporter 84.2 0.82 2.1E-05 23.1 2.5 30 499-528 276-305 (501)
343 PRK00064 recF recombination pr 84.2 1.5 3.9E-05 21.3 3.9 21 488-508 247-267 (355)
344 KOG0082 consensus 84.2 1.1 2.7E-05 22.3 3.1 45 481-526 299-345 (354)
345 cd03283 ABC_MutS-like MutS-lik 84.1 1.2 3.1E-05 22.0 3.3 24 501-524 25-48 (199)
346 cd03287 ABC_MSH3_euk MutS3 hom 83.9 1.5 3.8E-05 21.4 3.7 25 500-524 30-54 (222)
347 COG4604 CeuD ABC-type enteroch 83.8 1.2 3.1E-05 22.0 3.3 22 505-526 31-52 (252)
348 cd02028 UMPK_like Uridine mono 83.8 0.77 2E-05 23.3 2.2 26 504-529 2-27 (179)
349 cd03243 ABC_MutS_homologs The 83.8 1.3 3.3E-05 21.8 3.4 24 501-524 29-52 (202)
350 PRK13873 conjugal transfer ATP 83.8 1.2 2.9E-05 22.1 3.1 52 503-562 443-494 (815)
351 smart00382 AAA ATPases associa 83.8 1.3 3.2E-05 21.9 3.3 27 502-528 3-29 (148)
352 PRK13549 xylose transporter AT 83.7 0.88 2.2E-05 22.9 2.5 28 499-526 286-313 (513)
353 cd03215 ABC_Carb_Monos_II This 83.7 0.54 1.4E-05 24.3 1.4 30 499-528 24-53 (182)
354 PRK11929 putative bifunctional 83.7 1.9 4.8E-05 20.7 4.2 39 483-526 575-614 (953)
355 cd01858 NGP_1 NGP-1. Autoanti 83.6 2.6 6.7E-05 19.8 5.7 25 498-522 99-123 (157)
356 cd00071 GMPK Guanosine monopho 83.5 0.8 2E-05 23.2 2.2 27 503-529 1-27 (137)
357 PRK13830 conjugal transfer pro 83.5 1.2 3E-05 22.1 3.0 54 503-564 458-511 (818)
358 TIGR03269 met_CoM_red_A2 methy 83.4 0.93 2.4E-05 22.7 2.5 32 498-529 307-338 (520)
359 TIGR01978 sufC FeS assembly AT 83.3 1 2.5E-05 22.5 2.6 11 250-260 136-146 (248)
360 PRK10875 recD exonuclease V su 83.3 2.7 6.9E-05 19.7 5.8 19 509-527 444-462 (607)
361 KOG0729 consensus 83.3 2 5.1E-05 20.5 4.2 155 457-625 173-335 (435)
362 pfam00488 MutS_V MutS domain V 83.3 1.6 4.2E-05 21.1 3.7 24 501-524 42-65 (234)
363 cd02021 GntK Gluconate kinase 83.2 1.1 2.9E-05 22.2 2.9 26 503-528 1-26 (150)
364 COG4962 CpaF Flp pilus assembl 83.2 2.7 7E-05 19.6 5.9 50 469-526 149-198 (355)
365 cd02024 NRK1 Nicotinamide ribo 83.0 1.1 2.9E-05 22.2 2.8 24 505-528 3-26 (187)
366 COG1196 Smc Chromosome segrega 83.0 1.3 3.2E-05 21.9 3.1 10 468-477 530-539 (1163)
367 PRK07952 DNA replication prote 82.9 2.8 7.1E-05 19.6 5.4 118 502-633 97-229 (242)
368 TIGR01166 cbiO cobalt ABC tran 82.9 1.4 3.6E-05 21.6 3.2 63 499-569 16-79 (190)
369 COG3451 VirB4 Type IV secretor 82.8 1.2 3.1E-05 22.0 2.9 27 503-529 438-464 (796)
370 cd03271 ABC_UvrA_II The excisi 82.7 1.2 3.1E-05 22.0 2.9 23 499-521 19-41 (261)
371 cd03242 ABC_RecF RecF is a rec 82.7 1.8 4.7E-05 20.8 3.8 26 501-526 21-46 (270)
372 COG2274 SunT ABC-type bacterio 82.6 1 2.6E-05 22.4 2.5 31 499-529 497-527 (709)
373 PRK09700 D-allose transporter 82.6 1 2.6E-05 22.5 2.5 31 498-528 286-316 (510)
374 PRK10636 putative ABC transpor 82.5 0.89 2.3E-05 22.9 2.1 26 502-527 339-364 (638)
375 PRK05541 adenylylsulfate kinas 82.5 1.9 4.9E-05 20.6 3.8 30 499-528 5-34 (176)
376 PRK10982 galactose/methyl gala 82.4 1.1 2.7E-05 22.3 2.5 29 499-527 272-300 (491)
377 TIGR01842 type_I_sec_PrtD type 82.4 1.1 2.8E-05 22.2 2.6 89 422-540 307-396 (556)
378 COG1131 CcmA ABC-type multidru 82.3 1.1 2.7E-05 22.3 2.5 24 503-526 33-56 (293)
379 PRK02006 murD UDP-N-acetylmura 82.3 2.9 7.5E-05 19.4 5.4 10 442-451 353-362 (501)
380 KOG0979 consensus 82.2 1.3 3.4E-05 21.7 2.9 29 73-101 50-78 (1072)
381 COG3638 ABC-type phosphate/pho 82.2 1.2 2.9E-05 22.1 2.6 24 502-525 31-54 (258)
382 KOG0738 consensus 82.2 3 7.6E-05 19.4 5.9 252 450-726 201-489 (491)
383 PRK11174 cysteine/glutathione 82.2 1.4 3.5E-05 21.6 3.0 27 499-525 374-400 (588)
384 COG4172 ABC-type uncharacteriz 82.1 2.3 5.9E-05 20.1 4.1 59 503-568 315-373 (534)
385 KOG0055 consensus 82.1 1.5 3.8E-05 21.4 3.2 27 500-526 1015-1041(1228)
386 PRK11147 ABC transporter ATPas 82.1 1 2.6E-05 22.4 2.3 27 502-528 346-372 (632)
387 PRK11819 putative ABC transpor 82.0 1.2 3E-05 22.1 2.6 26 502-527 351-376 (556)
388 CHL00181 cbbX CbbX; Provisiona 81.9 3 7.7E-05 19.3 7.9 102 465-567 13-131 (287)
389 COG4778 PhnL ABC-type phosphon 81.8 1.3 3.3E-05 21.8 2.7 12 253-264 146-157 (235)
390 PRK13898 type IV secretion sys 81.8 2.1 5.4E-05 20.4 3.8 55 503-566 448-502 (800)
391 TIGR00635 ruvB Holliday juncti 81.7 3.1 7.9E-05 19.3 6.4 95 473-576 3-99 (305)
392 TIGR02533 type_II_gspE general 81.6 0.89 2.3E-05 22.9 1.8 86 415-520 173-264 (495)
393 COG4088 Predicted nucleotide k 81.6 1.3 3.4E-05 21.7 2.8 11 486-496 248-258 (261)
394 PRK13948 shikimate kinase; Pro 81.5 1.8 4.6E-05 20.9 3.4 32 498-529 7-38 (182)
395 COG0465 HflB ATP-dependent Zn 81.5 3.1 8E-05 19.2 5.9 17 505-521 347-363 (596)
396 PRK13853 type IV secretion sys 81.4 1.3 3.3E-05 21.8 2.6 55 504-564 429-484 (789)
397 TIGR02397 dnaX_nterm DNA polym 81.4 2.6 6.6E-05 19.8 4.2 144 473-634 13-174 (363)
398 cd01428 ADK Adenylate kinase ( 81.3 1.7 4.3E-05 21.0 3.2 24 504-527 2-25 (194)
399 PRK11153 metN DL-methionine tr 81.2 1.2 3.2E-05 21.9 2.5 12 467-478 235-246 (343)
400 COG1132 MdlB ABC-type multidru 81.1 1.7 4.4E-05 21.0 3.2 30 500-529 354-383 (567)
401 COG4913 Uncharacterized protei 81.0 1.4 3.5E-05 21.6 2.6 35 20-59 7-44 (1104)
402 PRK06696 uridine kinase; Valid 80.8 3.3 8.4E-05 19.1 5.7 30 500-529 25-54 (227)
403 PRK13545 tagH teichoic acids e 80.8 0.93 2.4E-05 22.7 1.7 55 574-637 365-421 (549)
404 PRK07940 DNA polymerase III su 80.8 3.3 8.5E-05 19.1 5.7 54 473-526 4-64 (395)
405 PRK09435 arginine/ornithine tr 80.7 3.3 8.5E-05 19.1 5.8 40 485-525 34-73 (325)
406 COG1100 GTPase SAR1 and relate 80.5 1.4 3.6E-05 21.6 2.6 22 502-523 6-27 (219)
407 TIGR02633 xylG D-xylose ABC tr 80.5 1.2 3.1E-05 22.0 2.2 86 497-593 394-488 (501)
408 TIGR01351 adk adenylate kinase 80.5 1.9 4.8E-05 20.7 3.2 27 674-700 175-201 (232)
409 TIGR02142 modC_ABC molybdate A 80.3 1.1 2.9E-05 22.2 2.0 15 223-237 133-147 (361)
410 TIGR02525 plasmid_TraJ plasmid 80.3 1.5 3.8E-05 21.4 2.6 56 40-99 6-77 (374)
411 cd03114 ArgK-like The function 80.2 1.3 3.3E-05 21.8 2.3 21 506-526 4-24 (148)
412 TIGR00382 clpX ATP-dependent C 80.2 1.9 4.8E-05 20.7 3.1 129 504-637 155-315 (452)
413 cd01855 YqeH YqeH. YqeH is an 80.2 2.9 7.3E-05 19.5 4.1 38 480-525 114-151 (190)
414 smart00534 MUTSac ATPase domai 80.1 1.7 4.3E-05 21.1 2.8 22 503-524 1-22 (185)
415 pfam10236 DAP3 Mitochondrial r 80.0 3.5 8.9E-05 18.9 5.0 20 161-180 81-100 (274)
416 PRK11288 araG L-arabinose tran 80.0 1.4 3.6E-05 21.6 2.4 31 498-528 276-306 (501)
417 cd02029 PRK_like Phosphoribulo 80.0 1.5 3.9E-05 21.3 2.6 27 505-531 3-29 (277)
418 COG4559 ABC-type hemin transpo 79.8 1.7 4.2E-05 21.1 2.7 11 508-518 34-44 (259)
419 PRK02496 adk adenylate kinase; 79.8 2.4 6.1E-05 20.0 3.6 36 664-699 123-158 (185)
420 COG1149 MinD superfamily P-loo 79.8 2.1 5.4E-05 20.4 3.3 25 503-527 4-28 (284)
421 TIGR03375 type_I_sec_LssB type 79.8 1.3 3.3E-05 21.8 2.2 29 501-529 491-519 (694)
422 KOG1051 consensus 79.7 3.6 9.2E-05 18.9 8.4 140 469-612 556-710 (898)
423 PRK05563 DNA polymerase III su 79.6 3.6 9.2E-05 18.8 5.9 20 161-180 127-146 (541)
424 PRK03846 adenylylsulfate kinas 79.6 2.6 6.8E-05 19.7 3.7 29 499-527 22-50 (198)
425 COG1134 TagH ABC-type polysacc 79.6 1.1 2.8E-05 22.3 1.7 21 505-525 57-77 (249)
426 KOG0061 consensus 79.5 1.5 3.8E-05 21.4 2.4 26 228-253 205-241 (613)
427 COG0237 CoaE Dephospho-CoA kin 79.4 2.2 5.7E-05 20.2 3.3 78 502-588 3-80 (201)
428 PRK04690 murD UDP-N-acetylmura 79.4 1.3 3.2E-05 21.9 2.0 14 577-590 447-460 (468)
429 COG5019 CDC3 Septin family pro 79.4 1.6 4.1E-05 21.2 2.6 32 495-526 129-161 (373)
430 COG1703 ArgK Putative periplas 79.3 2.6 6.6E-05 19.8 3.6 33 494-526 44-76 (323)
431 cd03275 ABC_SMC1_euk Eukaryoti 79.2 2.1 5.4E-05 20.4 3.1 29 501-529 22-50 (247)
432 KOG0018 consensus 79.2 1.8 4.6E-05 20.8 2.8 54 504-565 533-586 (1141)
433 KOG0730 consensus 79.2 1.7 4.5E-05 20.9 2.7 127 498-633 465-602 (693)
434 PRK00889 adenylylsulfate kinas 79.1 2.6 6.7E-05 19.8 3.6 28 501-528 4-31 (175)
435 PRK08233 hypothetical protein; 79.1 2.8 7.2E-05 19.5 3.7 30 502-531 4-33 (182)
436 cd03238 ABC_UvrA The excision 78.9 2.4 6E-05 20.1 3.3 24 499-522 19-42 (176)
437 PRK13409 putative ATPase RIL; 78.6 1.6 4E-05 21.3 2.3 28 500-527 364-391 (590)
438 COG1119 ModF ABC-type molybden 78.6 2.2 5.6E-05 20.3 3.1 13 508-520 64-76 (257)
439 cd01673 dNK Deoxyribonucleosid 78.5 2 5.2E-05 20.5 2.9 24 504-527 2-25 (193)
440 cd01129 PulE-GspE PulE/GspE Th 78.4 3.9 1E-04 18.6 5.6 44 473-523 59-102 (264)
441 cd03276 ABC_SMC6_euk Eukaryoti 78.4 3.2 8.3E-05 19.2 3.9 30 501-530 21-50 (198)
442 TIGR02237 recomb_radB DNA repa 78.4 1.9 4.8E-05 20.7 2.7 70 494-595 5-74 (223)
443 TIGR01193 bacteriocin_ABC ABC- 78.3 1.4 3.6E-05 21.6 2.0 54 86-139 67-131 (710)
444 TIGR02746 TraC-F-type type-IV 78.3 4 0.0001 18.6 4.3 170 505-730 493-681 (900)
445 pfam10662 PduV-EutP Ethanolami 78.3 1.8 4.7E-05 20.8 2.6 21 504-527 4-24 (143)
446 COG0466 Lon ATP-dependent Lon 78.3 4 0.0001 18.6 7.0 202 450-690 294-541 (782)
447 TIGR00634 recN DNA repair prot 78.3 1.6 4E-05 21.2 2.2 153 410-588 406-580 (605)
448 PTZ00088 adenylate kinase 1; P 78.2 2.4 6.1E-05 20.0 3.1 28 674-701 172-200 (225)
449 KOG0652 consensus 78.2 4 0.0001 18.6 7.3 131 498-635 202-342 (424)
450 cd02019 NK Nucleoside/nucleoti 78.2 2.2 5.5E-05 20.3 2.9 24 504-527 2-25 (69)
451 pfam03193 DUF258 Protein of un 78.2 1.9 4.8E-05 20.7 2.6 16 505-520 39-54 (161)
452 TIGR01313 therm_gnt_kin carboh 78.2 1.7 4.3E-05 21.0 2.4 23 214-236 45-68 (175)
453 KOG2203 consensus 78.1 3 7.6E-05 19.4 3.6 12 64-75 89-100 (772)
454 COG4525 TauB ABC-type taurine 78.1 1.9 4.8E-05 20.7 2.6 18 506-523 36-53 (259)
455 PRK09862 putative ATP-dependen 77.8 3.7 9.5E-05 18.7 4.1 134 473-616 190-350 (506)
456 KOG2028 consensus 77.8 4.1 0.0001 18.5 10.3 43 710-752 469-516 (554)
457 PRK00131 aroK shikimate kinase 77.7 2.5 6.5E-05 19.8 3.2 29 501-529 4-32 (175)
458 COG0488 Uup ATPase components 77.7 2 5E-05 20.6 2.6 26 503-528 350-375 (530)
459 pfam05970 DUF889 PIF1 helicase 77.6 1.7 4.3E-05 21.1 2.2 11 557-567 308-318 (418)
460 PRK11784 tRNA 2-selenouridine 77.5 4.2 0.00011 18.4 5.0 53 480-545 125-177 (333)
461 smart00072 GuKc Guanylate kina 77.5 2.6 6.6E-05 19.8 3.1 57 501-568 2-58 (184)
462 PRK00279 adk adenylate kinase; 77.4 2.6 6.7E-05 19.7 3.2 27 674-700 163-189 (215)
463 PTZ00265 multidrug resistance 77.4 1.9 4.9E-05 20.6 2.5 28 499-526 1193-1220(1467)
464 pfam03266 DUF265 Protein of un 77.4 2.5 6.4E-05 19.9 3.0 25 504-528 2-26 (168)
465 pfam01583 APS_kinase Adenylyls 77.2 3.2 8.2E-05 19.2 3.6 26 502-527 3-28 (157)
466 COG4175 ProV ABC-type proline/ 77.2 2.2 5.6E-05 20.3 2.7 19 126-146 49-67 (386)
467 PRK03815 murD UDP-N-acetylmura 77.1 1.5 3.9E-05 21.3 1.9 18 509-526 95-112 (401)
468 PRK08451 DNA polymerase III su 77.0 4.3 0.00011 18.3 6.1 22 161-182 125-146 (523)
469 COG1159 Era GTPase [General fu 76.9 2.4 6E-05 20.1 2.8 17 503-519 8-24 (298)
470 pfam03205 MobB Molybdopterin g 76.7 2.8 7.2E-05 19.6 3.2 22 504-525 3-24 (122)
471 KOG1969 consensus 76.6 2.8 7.1E-05 19.6 3.1 40 497-537 322-361 (877)
472 TIGR02030 BchI-ChlI magnesium 76.4 2.6 6.7E-05 19.8 2.9 24 504-527 28-51 (340)
473 COG0396 sufC Cysteine desulfur 76.4 2.5 6.4E-05 19.9 2.8 20 503-522 32-51 (251)
474 pfam03308 ArgK ArgK protein. T 76.4 3.7 9.3E-05 18.8 3.7 32 494-525 22-53 (267)
475 COG4988 CydD ABC-type transpor 76.4 2.2 5.6E-05 20.3 2.6 27 502-528 348-374 (559)
476 TIGR02729 Obg_CgtA GTP-binding 76.4 1.5 3.9E-05 21.3 1.7 32 506-537 163-197 (296)
477 PRK04040 adenylate kinase; Pro 76.4 3.9 1E-04 18.6 3.8 55 502-556 3-58 (189)
478 PRK00089 era GTP-binding prote 76.3 3.3 8.4E-05 19.1 3.4 28 494-521 1-28 (296)
479 PRK10418 nikD nickel transport 76.3 2 5.1E-05 20.5 2.3 23 503-525 31-53 (254)
480 KOG3347 consensus 76.3 2.6 6.5E-05 19.8 2.9 23 504-526 10-32 (176)
481 COG4598 HisP ABC-type histidin 76.2 2.8 7.2E-05 19.6 3.1 22 503-524 34-55 (256)
482 TIGR01187 potA polyamine ABC t 76.2 1.3 3.3E-05 21.8 1.3 17 506-522 1-17 (331)
483 PRK10773 murF UDP-N-acetylmura 76.2 3.4 8.8E-05 19.0 3.5 51 480-535 81-132 (452)
484 PRK13946 shikimate kinase; Pro 76.1 3 7.7E-05 19.4 3.2 23 504-526 23-45 (195)
485 COG0497 RecN ATPase involved i 76.1 2.8 7.2E-05 19.5 3.0 31 503-533 24-54 (557)
486 KOG0991 consensus 76.1 4.5 0.00012 18.2 4.8 65 473-543 26-91 (333)
487 PRK00141 murD UDP-N-acetylmura 76.0 1.8 4.6E-05 20.8 2.0 17 509-525 129-145 (476)
488 PRK05896 DNA polymerase III su 76.0 4.6 0.00012 18.2 6.1 48 473-525 15-62 (613)
489 cd01854 YjeQ_engC YjeQ/EngC. 75.9 2.3 6E-05 20.1 2.6 20 502-521 162-181 (287)
490 PRK08727 hypothetical protein; 75.9 4.6 0.00012 18.1 7.6 103 451-568 1-103 (233)
491 PRK05057 aroK shikimate kinase 75.8 3.2 8.2E-05 19.2 3.3 28 499-526 2-29 (172)
492 cd00464 SK Shikimate kinase (S 75.6 3.2 8.1E-05 19.2 3.2 23 504-526 2-24 (154)
493 pfam00350 Dynamin_N Dynamin fa 75.6 2 5E-05 20.6 2.1 18 504-521 1-18 (168)
494 PRK05506 bifunctional sulfate 75.5 3.7 9.4E-05 18.8 3.5 24 502-525 444-467 (613)
495 cd04164 trmE TrmE (MnmE, ThdF, 75.4 2.7 6.8E-05 19.7 2.7 19 504-522 4-22 (157)
496 TIGR00750 lao LAO/AO transport 75.3 2.4 6.1E-05 20.0 2.5 20 506-525 43-62 (333)
497 PRK02705 murD UDP-N-acetylmura 75.3 1.8 4.7E-05 20.8 1.9 17 509-525 115-131 (459)
498 PRK01889 ribosome-associated G 75.2 2.5 6.5E-05 19.9 2.6 20 502-521 195-214 (353)
499 PRK06547 hypothetical protein; 75.2 3.9 0.0001 18.6 3.6 33 502-534 16-48 (184)
500 PRK01390 murD UDP-N-acetylmura 75.2 2 5E-05 20.6 2.0 17 509-525 120-136 (457)
No 1
>PRK07078 hypothetical protein; Validated
Probab=100.00 E-value=0 Score=726.23 Aligned_cols=427 Identities=22% Similarity=0.311 Sum_probs=357.2
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCEEEEECCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 55330478999987089839999617814686088057741312201344589999999999999865410123014889
Q gi|254781225|r 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384 (789)
Q Consensus 305 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~wy~~~~~~~~~~~g~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (789)
...++...+..|...+.+.++|+.+.+.| ++|+|.+|+......- ...++.+..++....+. .+..
T Consensus 70 ~~~t~~~~a~~f~~~y~~~~ry~~~~~~w--------~~w~g~~W~~d~~~~a-----~~~~r~~~~~~~~~~~~-~~~~ 135 (510)
T PRK07078 70 SPATEDALALAFTRRYADDWRYCALWGKW--------LVWTGVRWNPERTLAA-----FHLIRGICREAALKAES-PRLA 135 (510)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCE--------EEECCCEECCCCCHHH-----HHHHHHHHHHHHHHCCC-HHHH
T ss_conf 99746689999999840326766034717--------9975846225764259-----99999999999873443-8788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCC
Q ss_conf 98756877762000267999987411000012320220579717660793797438885589865501001378888757
Q gi|254781225|r 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464 (789)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~ll~~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a 464 (789)
. +.+.. .....+...+.......++.++||+||+||||+|||+||+||+|++|+|+|++|+++++. |.+
T Consensus 136 ~------~~~~~---~~~~~v~~~ar~~~~~~~~~e~~D~dp~lLn~~nGvvDLrTG~lr~h~p~d~iTk~t~v~--P~a 204 (510)
T PRK07078 136 A------KLASS---STVGGVERLARSDRRHAATAEEWDADPWLLNTPGGVVDLRTGRLRPHRREDRMTKLTTAT--PAG 204 (510)
T ss_pred H------HHHHH---HHHHHHHHHHHHCCCCCCCHHHHCCCCHHHCCCCEEEECCCCCCCCCCHHHCEEEECCCC--CCC
T ss_conf 8------98765---678999999841833347977855894310799817989779727899878445300368--789
Q ss_pred CHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCC
Q ss_conf 9478999998887-999999999999999975987433799997078862578999999972330003442676420124
Q gi|254781225|r 465 PSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 (789)
Q Consensus 465 ~~p~~~~~l~~~~-~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~ 543 (789)
+||.|++||++|| +|+|+++|||+++||||+|.+++|+++|++|+|+||||||+++|+.|||+|+.+....+++.. ++
T Consensus 205 ~cP~W~~FL~~if~gD~eli~fLQr~~GY~LtG~t~Eq~lf~l~G~G~NGKStf~~vl~~lLGdYa~t~~~~tl~~~-~~ 283 (510)
T PRK07078 205 DCPTWRQFLAEVTGGDAALQAYLQRMAGYALTGDTSEHALFFLYGTGANGKSVFVNTLATILGDYAANAAMDTFMET-RG 283 (510)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHC-CC
T ss_conf 89379999999848999999999999757633787733899997589884789999999986566304898999634-68
Q ss_pred CCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCE
Q ss_conf 55556898899738980999934677760131002454159858732104786068714528999738863426798416
Q gi|254781225|r 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 (789)
Q Consensus 544 ~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~ 623 (789)
+.++++||+|.|+|+++++|+++|.++++++||+|||||+|+||++|++.| +|.|+|++||+|||+|.+++.|+|+
T Consensus 284 ---~~~~~dlA~L~GaRlV~asE~eeG~rl~Ea~IKqLTGGD~ItAR~l~~d~f-eF~P~fkL~l~tNhlP~i~~~D~gi 359 (510)
T PRK07078 284 ---DRHPTDLAGLRGARFVSAIETEQGRRWAESKVKQLTGGDKISARFMRQDFF-EFTPQFKLLIAGNHKPAIRNVDEAM 359 (510)
T ss_pred ---CCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHHEECCCCEEEEECCCCCCE-EECCCEEEEEECCCCCCCCCCCHHH
T ss_conf ---999878883379818996548865004477454301797267420257754-8512438999737877577888201
Q ss_pred EEEEEEEECCCCCC--CCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHE
Q ss_conf 64689996588788--8787833422012044799999999999998788988788999999999984263888875432
Q gi|254781225|r 624 WRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 (789)
Q Consensus 624 ~rR~~iipF~~~~~--~~d~~~~~~~~~~e~~~i~~w~l~g~~~~~~~g~~~~~p~~v~~a~~~y~~~~D~v~~fi~e~c 701 (789)
|||++||||+++|+ ++|++|.++| ..|.+|||+|+|+||++|+++|| ..|++|.+|+++|+.++|+|++||+|||
T Consensus 360 WRRi~vIPF~~~f~~~~~D~~L~~KL-~aE~pGIL~W~IeG~~~wq~~GL--~~P~~V~~At~eYr~e~D~vg~Fl~EcC 436 (510)
T PRK07078 360 KRRLHLIPFTVTVPPERRDKRLQEKL-LAERDGILAWAVEGCLDWQRNGL--DPPQSVVDATEEYFEAEDALGQWLEERC 436 (510)
T ss_pred EEEEEEEEEEEECCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCHHHHHHHHHE
T ss_conf 44799987455368656483589999-97348999999999999998299--9988999999999984686988877647
Q ss_pred EECCCCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEECCC
Q ss_conf 6268841117999999999998504667555452568999986354233310010256765208997986566
Q gi|254781225|r 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 (789)
Q Consensus 702 e~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~~Gi~Lk~~ 774 (789)
+++++..++..+||++|++||+++|+ .++|++.|+..|.++||... +...+.|+|+||+||+.
T Consensus 437 ~v~~~~~~~~~eLY~aYr~Wc~~nGe---~~~s~~~F~~~L~~~GF~~~-------r~~~g~r~~~Gi~lk~~ 499 (510)
T PRK07078 437 VREANAKETTADLFADWKEWAERAGE---FVGSQKRFSELLITRGFEKW-------RLHGGVRGFSGLSLKPK 499 (510)
T ss_pred EECCCCEEEHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHHHCCCCCC-------CCCCCCCEEEEEEECCC
T ss_conf 98899704089999999999998498---74419999999997688600-------36698212775675358
No 2
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=100.00 E-value=0 Score=532.46 Aligned_cols=347 Identities=25% Similarity=0.382 Sum_probs=309.3
Q ss_pred CCCCHHHCCCCCCEEEECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCC----HHHHHHHHHHHC-CCHHHHHHHHHH
Q ss_conf 123202205797176607937974388855898655010013788887579----478999998887-999999999999
Q gi|254781225|r 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP----SQEFLDLVSGYF-ESEEVMDYFTRC 489 (789)
Q Consensus 415 ~~~~~~~ld~~~~ll~~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~----~p~~~~~l~~~~-~d~e~~~~l~~~ 489 (789)
+.+.....|.+|+||||+|||+||+||+|+||+|++++|+.+++.|.+.+. ||.|.+||.+++ +|.|++.++|++
T Consensus 139 ~~~~~~~~~~~p~li~~~NGv~dl~tgql~ph~~~~~~t~~~~~~y~~~~~~~~~~p~~~~~L~~~~~~d~el~~ll~~i 218 (517)
T COG3378 139 KAATPKQQDPDPHLINFANGVLDLRTGQLEPHDPEDRFTRIIPVDYTDPAADPSHCPKWREWLDRVAGGDPELRNLLQRI 218 (517)
T ss_pred CCCCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 13460003699775501682377330233647821204674234446875555568509999987615788899999999
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCC
Q ss_conf 99997598743379999707886257899999997233000344267642012455556898899738980999934677
Q gi|254781225|r 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 (789)
Q Consensus 490 ~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~ 569 (789)
+||+|+|.+++|++++++|+|+||||||.++|+.|+|.||+++.+...|.. ..+.++++|.|.|+|++.++|.++
T Consensus 219 ~g~~l~g~~~~~k~~~l~G~G~nGKstf~~li~~llG~~n~~s~~~~~~~~-----~~~~~~~~A~Lvg~~~v~~~E~~k 293 (517)
T COG3378 219 IGASLTGRVSEQKLFWLYGPGGNGKSTFVDLISNLLGRYNVTSAPLTDLEA-----DDRHPFGLAALVGKRLVTVSETEK 293 (517)
T ss_pred HHHEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHCCCCHHHHHH-----HCCCCCHHHHHHCCEEEEECCCCC
T ss_conf 766006753400479997689987389999999984542110362887753-----204863388761755787047653
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCC--CCCHHHHH
Q ss_conf 7601310024541598587321047860687145289997388634267984166468999658878887--87833422
Q gi|254781225|r 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKL 647 (789)
Q Consensus 570 ~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~--d~~~~~~~ 647 (789)
+...+++.||+|||||.|+||+||+++| +|.|++++++++||+|++++.|.|||||+++|||+++|+.. |..+.+++
T Consensus 294 g~l~~~~~lK~ltgGD~i~a~~K~kd~~-~f~p~a~~i~~~N~~P~~~~~d~ai~rR~~ivpF~~~f~~~~~d~~l~~kl 372 (517)
T COG3378 294 GRLDDEGKLKALTGGDVISAERKRKDFF-SFTPNAKLIQATNHPPRIRGDDEAIWRRLLIVPFEKQFPPAERDDKLDEKL 372 (517)
T ss_pred CCCCCCCCEEEECCCCEEEEHHCCCCCE-EECCCEEEEEECCCCCCCCCCCHHHHHEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 3003556636642587032011057844-751451788732889721364154232257875566678844315576888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCEECHH------HHHHHHHHH
Q ss_conf 01204479999999999999878898878899999999998426388887543262688411179------999999999
Q gi|254781225|r 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH------SLAKSYSEY 721 (789)
Q Consensus 648 ~~~e~~~i~~w~l~g~~~~~~~g~~~~~p~~v~~a~~~y~~~~D~v~~fi~e~ce~~~~~~~~~~------~l~~~y~~~ 721 (789)
..|.++||+|+|+|+.+|+.+|+ ..|+++.+++++|++++|+|.+|++|||+..+....+.. +||.+|.+|
T Consensus 373 -~~E~~~IL~~~v~g~~~~~~~g~--~~pq~~~~~~ee~k~~~D~v~~F~~d~~~~~~~~~~~~~~~~~~~~ly~~y~~w 449 (517)
T COG3378 373 -AAERPGILNWLVAGFLDLQREGL--DQPQAVLDALEEYKRENDPVFQFCDDECVLGETDGTPTAFDNIVLELYEAYQEW 449 (517)
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf -87438899999999888876168--955667999998887322799999887431544331114135667899999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEECC
Q ss_conf 9850466755545256899998635423331001025676520899798656
Q gi|254781225|r 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 (789)
Q Consensus 722 ~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~~Gi~Lk~ 773 (789)
|+.+|- ..++|++.|...|...+...+.++.+. ..+.+.+.-.++..++
T Consensus 450 ~e~~G~--~~~~s~~~F~~~l~~~~v~~~r~~~~~-~~t~g~~~~~~L~~~~ 498 (517)
T COG3378 450 CEANGY--VVELSKTRFGKELPTKGVPKGRKRHQG-ETTAGGRGGVDLDEQP 498 (517)
T ss_pred HHHCCC--CCCCHHHHHHCCCCCCCCCCCCEEEEC-CCCCCCCCCCCCCCCC
T ss_conf 975697--112226555223552122034123421-3578753434342235
No 3
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain; InterPro: IPR006500 These sequences form a clade within a larger family of proteins from viruses of bacteria and animals. Members of the family that contain this domain are found in phage and the plasmids of bacteria and archaea. .
Probab=100.00 E-value=0 Score=407.15 Aligned_cols=302 Identities=25% Similarity=0.425 Sum_probs=273.1
Q ss_pred CEEEECCCEEECCCCCCCCCCHHHHCC-EECCCCCCCCCCHHHHHH-----HHHHHC-CCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 176607937974388855898655010-013788887579478999-----998887-9999999999999999759874
Q gi|254781225|r 427 RFLGEQDGILDLETGQKVKPTKELYIT-KSTGTPFVEGEPSQEFLD-----LVSGYF-ESEEVMDYFTRCVGMALLGGNK 499 (789)
Q Consensus 427 ~ll~~~NGv~dl~t~~~~~~~~~~~~t-~~~~~~y~~~a~~p~~~~-----~l~~~~-~d~e~~~~l~~~~g~~l~g~~~ 499 (789)
++|+++|||+|++|++|++|+|+...+ ..+++.|++++.||.|.. ||.++| +|.++++|+|+++||+|+|.+.
T Consensus 1 ~~~~~~ng~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~p~~~~w~~~~~l~~~~~gd~~~~~~~~~~~g~~~~g~~~ 80 (316)
T TIGR01613 1 YLLNVGNGVYDLRTGELLPHDPDEDHTTRKITTEYDPDADCPTWNGWDPDAFLLELFGGDNELVEYLQRLAGYSLTGNYT 80 (316)
T ss_pred CCCCCCCCEEECCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 93114751254225733535761020120113432676666300146624678876257168999999997322023200
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCC-CCCCCCEE
Q ss_conf 33799997078862578999999972330003442676420124555568988997389809999346777-60131002
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKI 578 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~-~~~~~~~~ 578 (789)
+|++++++|.|+||||||.++|..++|+|++.......+.... ..+++.++.|.|+|+++.+|+..+ .+++++.+
T Consensus 81 ~~~~~~l~G~G~~Gk~~~~~~l~~~~G~~~~~~~~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~~~~g~~~~~~~~~ 156 (316)
T TIGR01613 81 EQKLFFLYGNGGNGKSTFQDLLSNLLGDYATNAVASLFLEELA----SEHRFGLARLEGKRLVIGDEVEKGVYRLDESTV 156 (316)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHCCHHCCCHHHHHHHHHH----HCCCCHHHHHCCCEEEEECCCCCCCEEECCCCE
T ss_conf 0256778625888436899999998341000201356777665----213300232103237862366745232012222
Q ss_pred EEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCC---CCCHHHHHCCCCHHHH
Q ss_conf 4541598587321047860687145289997388634267984166468999658878887---8783342201204479
Q gi|254781225|r 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQKLETKYTLEA 655 (789)
Q Consensus 579 K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~---d~~~~~~~~~~e~~~i 655 (789)
|++||||++++|++++++| +|.|.+++++++||+|.+++.+.|+|||+++|||++.|+.. +..+.+++...|.++|
T Consensus 157 k~l~ggd~~~~~~~~~~~~-~~~~~~~~~~~~n~~P~~~~~~~~~~rr~~~~pf~~~~~~~~~~~~~~~~~~~l~~~~~~ 235 (316)
T TIGR01613 157 KSLTGGDTVTARFKNKDPF-EFTPSFTLVLATNHLPRIKGFDGGIWRRLRIIPFTKVIPGEKKANKKLKEDLILNEGDGI 235 (316)
T ss_pred EEECCCCEEEEEECCCCHH-HHHCCCEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCHHCCHHHHHHHHHHCCHHH
T ss_conf 1111673357641477401-110152145521676655787631011346631322138510000678888875210478
Q ss_pred HHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCEECHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999999999998788988-788999999999984263888875432626884111799999999999850466755545
Q gi|254781225|r 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 (789)
Q Consensus 656 ~~w~l~g~~~~~~~g~~~~-~p~~v~~a~~~y~~~~D~v~~fi~e~ce~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s 734 (789)
++|+++|+..++..+ .+. .|+++.+++++|++++|+|..|++|||....+..++...+|..|..||.+.+. .+.++
T Consensus 236 ~~~~~~g~~~~~~~~-~~~p~p~~~~~~~~~~~~~~d~~~~f~~~~~~~~~~~~~~~~~~~~~~~~w~~~~g~--~~~~~ 312 (316)
T TIGR01613 236 LAWAVEGIRLWLRFG-DFSPEPKAVLEATEEYKEENDPVGRFLEECCDDEEGEKVPTRFVYEAYKEWCEEGGE--YPLLS 312 (316)
T ss_pred HHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC--CCCCC
T ss_conf 999998754443101-368875889999987630120578877765202133113467888889999872586--13410
Q ss_pred HH
Q ss_conf 25
Q gi|254781225|r 735 TR 736 (789)
Q Consensus 735 ~~ 736 (789)
++
T Consensus 313 ~~ 314 (316)
T TIGR01613 313 KN 314 (316)
T ss_pred CC
T ss_conf 24
No 4
>pfam09250 Prim-Pol Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.
Probab=99.87 E-value=7.1e-21 Score=156.38 Aligned_cols=140 Identities=25% Similarity=0.370 Sum_probs=100.4
Q ss_pred HHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH----HHCCEEEEECCCCCCEEEEEEECCCCHHHH-HHHHH
Q ss_conf 8999977985977356778787756545656898999742----007889992347798799996468812567-89998
Q gi|254781225|r 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTAN-TFKDT 84 (789)
Q Consensus 10 ~~~~i~~G~~viPi~pg~KrP~~~~~w~~~~~~~~~i~~~----~~~giGi~~G~~s~glv~iDiD~~d~~~~~-~~~~~ 84 (789)
|.+|+++||.|||+.|++|+|....+|++...+.+++.+| +.+||||.||. +|+++||||..++..+. .+...
T Consensus 1 a~~~~~~G~~v~Pl~p~~K~P~~~~g~~~at~d~~~i~~w~~~~p~~nigv~~g~--~~lvviDiD~~~~~~~l~~l~~~ 78 (161)
T pfam09250 1 ALRYAANGWAVLPLDPGSKKPLDPKGWQDATTDPAEIRRWWARNPGANIGLPTGR--SGLVVLDVDTKAGGDALAALERA 78 (161)
T ss_pred CHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCC--CCEEEEECCCCCCHHHHHHHHHH
T ss_conf 9779879698956699987799987320268999999999860999528887089--85799957676544899999985
Q ss_pred HHHCCCCCEEEECCCCCEEEEEEECCCCCCCCCC---CCCCCCCEEEECCC-CEEEECCCCCCCCCCEEECCC
Q ss_conf 7641899769967889659999507310244544---44576753485268-438804776888874575177
Q gi|254781225|r 85 FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT---TESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTP 153 (789)
Q Consensus 85 ~~~l~g~p~~~~g~~~~~~~~yr~~~~~~~~~~~---~~~~~~~iEi~~~G-~q~V~~gshp~Tg~~Y~w~~~ 153 (789)
...+..+..++++ .++.|++|++|+........ .....+++||+++| +|+|++||.+..| .|+|..+
T Consensus 79 ~~~lp~t~~~~T~-~gG~H~~fr~p~~~~~~~~~~~~~~~~~~gvDir~~g~~yvv~ppS~~~~g-~Y~w~~~ 149 (161)
T pfam09250 79 GGPLPPTLVVRTP-SGGRHLYFRVPDGPELKRNLLFAKDGGGGGIDIRAGGGGYVVAPPSVHPGG-PYEWTGG 149 (161)
T ss_pred CCCCCCCEEEECC-CCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCE-EEEEECC
T ss_conf 4888886168889-997799997788864367522102678998798538962899579537983-2898159
No 5
>pfam08706 D5_N D5 N terminal like. This domain is found in D5 proteins of DNA viruses and bacteriophage P4 DNA primases phages.
Probab=99.86 E-value=1.2e-20 Score=154.87 Aligned_cols=143 Identities=19% Similarity=0.192 Sum_probs=94.3
Q ss_pred HHHHHCCCEEEEEEECCEEEEECCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99870898399996178146860880577413122013445899999999999998654101230148899875687776
Q gi|254781225|r 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 (789)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~wy~~~~~~~~~~~g~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (789)
++....++.++|++..+.||. |+|.+|+..... .....+...+..+..+... .. .+.... .
T Consensus 3 ~~~~~~~~~l~y~~~~~~W~~--------~~g~~W~~d~~~-~v~~~~~~~~~~~~~~~~~------~~-~~~~~~---~ 63 (145)
T pfam08706 3 RLADRYGKDLRYVPGTGGWYV--------WDGKRWEEDSKK-AIRELADKLLRLILEEAEA------AK-ELRKFA---K 63 (145)
T ss_pred HHHHHHCCEEEEECCCCCEEE--------ECCCEEEECCHH-HHHHHHHHHHHHHHHHHHH------HH-HHHHHH---H
T ss_conf 899983993899778792899--------789894168588-9999999999999999999------99-999999---9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHH
Q ss_conf 20002679999874110000123202205797176607937974388855898655010013788887579478999998
Q gi|254781225|r 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 (789)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~ll~~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~ 474 (789)
.......+.++...+.+. +.+..+.||++|++|||+||||||+||+|++|+|++++|++++++|+|+++||.|++||+
T Consensus 64 ~~~~~~~i~~~~~~~~~~--~~~~~~~~D~~p~ll~~~NGv~DL~tg~l~~h~p~~~~T~~~~v~y~p~a~~p~~~~fL~ 141 (145)
T pfam08706 64 RSRSKSGVKNVLREAKAM--LDVTLDELDADPYLLNFPNGVLDLRTGELRPHDPEDRLTKITPVDYDPDADCPLWKQFLE 141 (145)
T ss_pred HHCCHHHHHHHHHHHHHH--CCCCHHHHCCCCCEECCCCEEEECCCCCCCCCCHHHHEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 850677899999984042--367988946997873799858989899578899778154425878898998878999999
Q ss_pred HHCC
Q ss_conf 8879
Q gi|254781225|r 475 GYFE 478 (789)
Q Consensus 475 ~~~~ 478 (789)
++|+
T Consensus 142 ~i~~ 145 (145)
T pfam08706 142 DIFG 145 (145)
T ss_pred HHHC
T ss_conf 9739
No 6
>cd04859 Prim_Pol Prim_Pol: Primase-polymerase (primpol) domain of the type found in bifunctional replicases from archaeal plasmids, including ORF904 protein of the crenarchaeal plasmid pRN1 from Sulfolobus islandicus (pRN1 primpol). These primpol domains belong to the archaeal/eukaryal primase (AEP) superfamily. This group includes archaeal plasmids and bacteriophage AEPs. The ORF904 protein is a multifunctional protein having ATPase, primase and DNA polymerase activity, and may play a role in the replication of the archaeal plasmid. The pRN1 primpol domain exhibits DNA polymerase and primase activities; a cluster of active site residues (three acidic residues, and a histidine) is required for both these activities. For pRN1 primpol, the primase activity prefers dNTPs to rNTPs; incorporation of dNTPs requires rNTP as cofactor. The pRN1 primpol contains an unusual zinc-binding stem, which is not conserved in other members of this group.
Probab=99.85 E-value=6.8e-20 Score=149.84 Aligned_cols=143 Identities=27% Similarity=0.355 Sum_probs=101.3
Q ss_pred CEEEEECCCCCCCCCCCCCCCC--CCCHHHHHHH----HHCCEEEEECCCCCCEEEEEEECCCCHHHH-HHHHHHHHCCC
Q ss_conf 8597735677878775654565--6898999742----007889992347798799996468812567-89998764189
Q gi|254781225|r 18 FKLIPLRLGDKRPQRLGKWEEQ--LLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTAN-TFKDTFEILHG 90 (789)
Q Consensus 18 ~~viPi~pg~KrP~~~~~w~~~--~~~~~~i~~~----~~~giGi~~G~~s~glv~iDiD~~d~~~~~-~~~~~~~~l~g 90 (789)
|+|||+.|++|+|.. .+|+.. ..+.++|.+| +.+||||.||. +||++||||+.+..... .....+..+..
T Consensus 1 ~~v~P~~~~~K~P~~-~~~~~~~at~d~~~i~~w~~~~p~~niGi~~G~--sglvviDiD~~~~~~~~~~~~~~~~~l~~ 77 (152)
T cd04859 1 FAVIPLDPGSKRPLI-KGWPKDAATTDPEQIEAWWRDGPDANIGLRTGP--SGLVVIDIDVKHDGAAALAALAELGKLPP 77 (152)
T ss_pred CEEEECCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCC--CCEEEEECCCCCCCHHHHHHHHHCCCCCC
T ss_conf 907746899871896-998874673999999999985998448888288--87799973267763468998776157787
Q ss_pred -CCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCHHH
Q ss_conf -9769967889659999507310244544445767534852684388047768888745751776558722164689999
Q gi|254781225|r 91 -TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED 169 (789)
Q Consensus 91 -~p~~~~g~~~~~~~~yr~~~~~~~~~~~~~~~~~~iEi~~~G~q~V~~gshp~Tg~~Y~w~~~~~~~~~~~~P~i~~~~ 169 (789)
++.++++ .++.|++|+.|+...... ......+++|||+.|+|+|++||+|.+|++|.|.. ..+++.+|+|+
T Consensus 78 ~t~~~~T~-~gG~H~~f~~p~~~~~~~-~~~~~~~~vDir~~g~yvV~pPS~~~~g~~y~~~~------~~~~~~~P~wl 149 (152)
T cd04859 78 LTLTVRTG-SGGRHLYFRVPDGVPVKS-VKGKGGPGIDIRGGGGYVVAPPSVHPGGGYYVWKS------TVDPAPAPEWL 149 (152)
T ss_pred CCEEEECC-CCCEEEEEECCCCCCCCC-CCCCCCCCEEEEECCCEEECCCCCCCCCCEEEECC------CCCCCCCCHHH
T ss_conf 77478869-994499998999862233-22476786789835988981786848964698089------99866788678
Q ss_pred HH
Q ss_conf 99
Q gi|254781225|r 170 VE 171 (789)
Q Consensus 170 ~~ 171 (789)
++
T Consensus 150 ~~ 151 (152)
T cd04859 150 LD 151 (152)
T ss_pred HC
T ss_conf 63
No 7
>pfam08707 PriCT_2 Primase C terminal 2 (PriCT-2). This alpha helical domain is found at the C terminal of primases.
Probab=99.19 E-value=6.7e-11 Score=90.12 Aligned_cols=61 Identities=36% Similarity=0.656 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 8888999999998621678156899999974035788978998864320101245676666415889987
Q gi|254781225|r 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293 (789)
Q Consensus 224 ~dyd~W~~vg~al~~~~~~~~~~l~lw~~wS~~~~~y~~~~~~~~w~sf~~~~~~~~~~~~~~~~~~~~~ 293 (789)
++|++|++|||||||++ +++++++|++||+++++|++.+|+++|++|.. .+..++.++++.
T Consensus 13 ~dy~~W~~vG~aL~~~~--~~~~~~lw~~wS~~~~ky~~~~~~~~W~sf~~-------~~~itigTl~~~ 73 (74)
T pfam08707 13 DDYDSWLRVGMALKHEF--GEEGLELWDEWSAKSSKYDPGECERKWDSFKR-------PGGITIGTLFYL 73 (74)
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC-------CCCCCHHHHHHH
T ss_conf 88899999999998266--65799999999746565883789999983779-------999348889986
No 8
>cd00525 AE_Prim_S_like AE_Prim_S_like: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. The replication machineries of A/Es are distinct from that of bacteria. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In eukaryotes, this small catalytically active primase subunit (p50) and a larger primase subunit (p60), referred to jointly as the core primase, associate with the B subunit and the DNA polymerase alpha subunit in a complex, called Pol alpha-pri. In addition to its catalytic role in replication, eukaryotic DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. Pfu41 and Pfu46 comprise the primase complex of the archaea Pyrococcus furiosus; these proteins have sequence identity to the eukaryotic p50 and p60 primase proteins respectively. Pfu41 preferentially uses dNTPs as substrate. Pfu46 regulates the pri
Probab=98.98 E-value=2e-09 Score=80.31 Aligned_cols=113 Identities=21% Similarity=0.252 Sum_probs=76.8
Q ss_pred CEEEEECCCCCCCCCCCCCCC-CCCCHHHHHHH----HHCCEEEEECCC----CCCEEEEEEECCCC---HHHHHHHHHH
Q ss_conf 859773567787877565456-56898999742----007889992347----79879999646881---2567899987
Q gi|254781225|r 18 FKLIPLRLGDKRPQRLGKWEE-QLLSSEKIDKL----PACGFGFVCGVG----EQPLYAFDIDSKDE---KTANTFKDTF 85 (789)
Q Consensus 18 ~~viPi~pg~KrP~~~~~w~~-~~~~~~~i~~~----~~~giGi~~G~~----s~glv~iDiD~~d~---~~~~~~~~~~ 85 (789)
+.++|+.++.|.|.. .+|+. ...+.+++..| +..|||+.||.. ..+++++|||..+. +........+
T Consensus 1 r~~~p~~~~~k~p~~-~~~~~~~~~~~~~~~~w~~~~~~~~i~~~~~~~~~~~~~~~lv~DlD~~~~~~~~~~~~~a~~~ 79 (136)
T cd00525 1 RPVSPIRPPGKGPFQ-RHWPFGATTDDAEILAWLANLPPGNIGLSLGRYDKLWKPDLLVFDLDPDDYDCWEDVKEAALLL 79 (136)
T ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 984455789888766-7886547558099999886338575017766567567998799826899999899999999999
Q ss_pred HHCCC-----CCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECC--CCEEEECCCCCC-CCCCEE
Q ss_conf 64189-----97699678896599995073102445444457675348526--843880477688-887457
Q gi|254781225|r 86 EILHG-----TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC--GQYFVAYNIHPK-TKKEYT 149 (789)
Q Consensus 86 ~~l~g-----~p~~~~g~~~~~~~~yr~~~~~~~~~~~~~~~~~~iEi~~~--G~q~V~~gshp~-Tg~~Y~ 149 (789)
.++.. +..++||+ ++.|++|+. +|++++ |+++|+|+|++. .+..+.
T Consensus 80 ~~ll~~~~~~~~~~~TG~-~G~H~~~~~-----------------iD~~~~~~~~~~v~p~S~~~~~~~~p~ 133 (136)
T cd00525 80 RELLDEDGLNTLVVTSGS-RGLHVYVRL-----------------IDIRVNARGRLLVAPPSVHPRPGGPPS 133 (136)
T ss_pred HHHHHHCCCCEEEECCCC-CEEEEEEEC-----------------CHHHCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 999988499554374389-834999976-----------------456435789727636556689989787
No 9
>COG4983 Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=5.1e-10 Score=84.24 Aligned_cols=419 Identities=11% Similarity=0.016 Sum_probs=193.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCEEEEECCCCCCEEEEEEECCC----CHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEC
Q ss_conf 65456568989997420078899923477987999964688----12567899987641899769967889659999507
Q gi|254781225|r 34 GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD----EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN 109 (789)
Q Consensus 34 ~~w~~~~~~~~~i~~~~~~giGi~~G~~s~glv~iDiD~~d----~~~~~~~~~~~~~l~g~p~~~~g~~~~~~~~yr~~ 109 (789)
.+|++++++++++.++.-+|||+++..+ +++|.||+|+.. +++.....+....+.++. ...+.+|.++|++-.-
T Consensus 51 ~TWsdf~tavralt~y~fdGIGFvFaen-~~~v~iDlDgcrd~~tGel~~~A~e~ir~l~nSy-tE~S~SGtGiHiigkg 128 (495)
T COG4983 51 ETWSDFNTAVRALTEYDFDGIGFVFAEN-NDDVPIDLDGCRDLDTGELKKSAQEKIRDLLNSY-TEFSESGTGIHIIGKG 128 (495)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHH-HHCCCCCCEEEEEEEC
T ss_conf 2010138899998724556436896037-8986636410242345665666788887645566-5125688627999505
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEEECC-CCCCCCCCEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 310244544445767534852684388047-7688887457517-76558722164689999999997620012434543
Q gi|254781225|r 110 KEGIKKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTT-PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187 (789)
Q Consensus 110 ~~~~~~~~~~~~~~~~iEi~~~G~q~V~~g-shp~Tg~~Y~w~~-~~~~~~~~~~P~i~~~~~~~l~~~~~~~~~~~~~~ 187 (789)
...+-...+.+..|++.++|+++..| -.+++-+ -++ ....+....---+.....+.+...+....-+....
T Consensus 129 ----~~~p~gGrR~gn~EmY~d~rF~~ftg~~vldn~r---~vneA~~ai~~~~~kwig~d~~~~l~~~~~~sng~~k~~ 201 (495)
T COG4983 129 ----EGIPIGGRRYGNPEMYADCRFGEFTGVDVLDNKR---CVNEAGNAISVSGDKWIGADPTQFLFEAYQESNGEAKSL 201 (495)
T ss_pred ----CCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCC---CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHH
T ss_conf ----6235665567882014555337640641145732---111466666630773016880898988777524562034
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH---------------CCCCCHHHHHHHHH
Q ss_conf 234554322234542000368898732101221114888899999999862---------------16781568999999
Q gi|254781225|r 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH---------------ETRGSSKGKEIARR 252 (789)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dyd~W~~vg~al~~---------------~~~~~~~~l~lw~~ 252 (789)
.++... ....+....+.+.... +++.+......||.| .++.+...++.
T Consensus 202 ~s~~~~----------sk~gA~fk~lfdgs~~----g~~~shS~AD~Alanmlafwtgd~av~i~~fgrS~lg~ReK--- 264 (495)
T COG4983 202 SSSTGK----------SKLGADFKELFDGSDI----GDALSHSNADCALANMLAFWTGDFAVHIWDFGRSGLGLREK--- 264 (495)
T ss_pred HHCCCC----------CCCCCHHHHHCCCCCC----CCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHCCCCCHHHH---
T ss_conf 412643----------1224337774787444----67623343346776658865077534402230243531434---
Q ss_pred HHCCCCCCC---HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 740357889---78998864320101245676666415889987663045444555533047899998708983999961
Q gi|254781225|r 253 WSKQGSTYD---EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329 (789)
Q Consensus 253 wS~~~~~y~---~~~~~~~w~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 329 (789)
|++...+-+ +..|+..|+.-... .........+...++.. ......+ + ....+++.-.....+|..+
T Consensus 265 w~r~r~~t~n~a~ri~q~iygrS~~~------q~Gve~et~~~~~kd~~-w~v~~~~-n--v~p~~~a~~e~~a~r~~~~ 334 (495)
T COG4983 265 WSRGRSKTDNQAERIIQDIYGRSASE------QQGVEVETLIHYAKDGG-WTVPTRS-N--VTPQSQANGETKALREAID 334 (495)
T ss_pred HHCCCCCCHHHHHHHHHHHHCCCHHC------CCCCCCHHEEHHHHCCC-CEECCCC-C--CCHHHHHHHCCCEEEEECC
T ss_conf 43046630248888888774620010------58852000001454078-2521555-6--7788875320460788404
Q ss_pred CCEEEEECCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78146860880577413122013445899999999999998654101230148899875687776200026799998741
Q gi|254781225|r 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 (789)
Q Consensus 330 ~~~wy~~~~~~~~~~~g~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (789)
. .|+....... -+....+++...... ++.....+ .+. ............. ..++ .+
T Consensus 335 ~-s~id~~~ktv-------t~~~v~~~n~~e~~~--~~~~~~~i---------~~a--~g~~vi~~~~es~-g~g~--~l 390 (495)
T COG4983 335 S-SWIDLDSKTV-------TVQSVEGYNASELVD--VFQKSGNI---------LEA--CGHEVISAIGESD-GGGE--FL 390 (495)
T ss_pred C-CEECCCCCEE-------EEEECCCCCHHHHHH--HHHCCCHH---------HHH--CCCEEEEECCCCC-CCCC--CH
T ss_conf 7-6011556637-------897405545787777--77312066---------664--4832787336788-8764--21
Q ss_pred CCCCCCCCCHHHCCCCCCEEEECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHHHHC-CCHHHHHHHHH
Q ss_conf 10000123202205797176607937974388855898655010013788887579478999998887-99999999999
Q gi|254781225|r 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTR 488 (789)
Q Consensus 410 ~~~~~~~~~~~~ld~~~~ll~~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~-~d~e~~~~l~~ 488 (789)
+..+......+..+.--..++..|+-+.+.|++...|+.....+.+.+..+-.++..+.|..++...+ .|..++.|++-
T Consensus 391 ~~~~~~~~~~dgrk~~~~~ls~~~~~lip~ta~~~~~t~~~a~~~~r~i~l~~~~~~~~~~~tg~~r~wls~~L~py~~g 470 (495)
T COG4983 391 DDSGNGWTVEDGRKNPYAHLSPLSNQLIPNTALAELPTHRVAYLPKREIWLWCDDGVWKPNGTGWVRQWLSEYLGPYYSG 470 (495)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHHHCCCEECCCCCCCEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 10268765743345735452334311165640223563332220003133134567152034331012456777888888
Q ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHH
Q ss_conf 99999759874337999970788625789
Q gi|254781225|r 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 (789)
Q Consensus 489 ~~g~~l~g~~~~~~~~~~~G~G~nGKSt~ 517 (789)
++++ ...+.+++..+.+.+++|++
T Consensus 471 ~v~~-----ev~dq~~nr~lv~e~~~~~~ 494 (495)
T COG4983 471 HIRR-----EVMDQLQNRSLVEEQRFGGG 494 (495)
T ss_pred HHHH-----HHHHHHHHHHHHHHHCCCCC
T ss_conf 8888-----99999988776665114468
No 10
>pfam05272 VirE Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins.
Probab=98.91 E-value=2.1e-08 Score=73.55 Aligned_cols=181 Identities=18% Similarity=0.216 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHCC--CHHHH-----HHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 94789999988879--99999-----999999999975987433799997078862578999999972330003442676
Q gi|254781225|r 465 PSQEFLDLVSGYFE--SEEVM-----DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 (789)
Q Consensus 465 ~~p~~~~~l~~~~~--d~e~~-----~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~ 537 (789)
-.|++..++.+.++ |.+.- .+|.-+++-++.++.....+++|.|+.|-|||||++.|. ++++..+...
T Consensus 9 G~~Ri~~l~~~~~g~~d~~~~~~~~~~wligaVaR~~~pG~k~d~vlvL~G~QG~gKStf~~~L~---~~~~~d~~~~-- 83 (198)
T pfam05272 9 GIPRIETLFIDYLGAEDSLYTREVSKLFLIGAVARVYEPGCKFDHVLILQGAQGSGKSTFLKKLG---GEWFTDSIRS-- 83 (198)
T ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHH---HHHCCCCCCC--
T ss_conf 81179999999629997599999999999999999977897677678998898678999999973---7751565557--
Q ss_pred HHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCC
Q ss_conf 42012455556898899738980999934677760131002454159858732104786068714528999738863426
Q gi|254781225|r 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 (789)
Q Consensus 538 ~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~ 617 (789)
. .....+..+.+.-++-++|.+.-.+-+.+.+|++.+-.....|..|+.....++-.+.++-.||+....+
T Consensus 84 ~---------~~kD~~~~l~~~wi~el~El~~~~k~~~~~lK~fls~~~d~~R~pY~~~~~~~pR~~vfigTtN~~~~L~ 154 (198)
T pfam05272 84 F---------EGKDAYEKLQGVWIVEIAELDGFSKAEVEAIKAFITRTVDSFRAPYGRRAESFPRQCVFVGTTNRDEFLK 154 (198)
T ss_pred C---------CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCHHCCCCCCEECCEEEEEEEECCCCCCCC
T ss_conf 6---------7738999999878732598751365329999998454131231022356400654799999638876557
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 7984166468999658878887878334220120447999999999
Q gi|254781225|r 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663 (789)
Q Consensus 618 ~~d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i~~w~l~g~ 663 (789)
|.+. -||+.+|+-...+...-. ..+....+...+.+-|+.-+
T Consensus 155 D~TG--nRRF~pi~v~~~~~~~~~--~~d~l~~~rdqlWAeA~~~Y 196 (198)
T pfam05272 155 DPTG--NRRFWPVKVGKKINIKHP--VSELLDEVRDQLWAEAVWYY 196 (198)
T ss_pred CCCC--CEEEEEEEECCCCCCCCC--CHHHHHHHHHHHHHHHHHHH
T ss_conf 9999--816899996885455767--55777999999999999997
No 11
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=98.21 E-value=3.3e-05 Score=52.27 Aligned_cols=193 Identities=14% Similarity=0.082 Sum_probs=117.8
Q ss_pred CCCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 89865501001378888757947899999888799999999999999997598743379999707886257899999997
Q gi|254781225|r 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 445 ~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
.+...+|+....+....+... ..+.++|..-==|+.... .++-.-|......+-.+.++|+.+.|||-|...|...
T Consensus 61 ~~~~~~~l~~~~~~~~~~i~~-N~~~~l~~~~gy~P~~~g---~~l~~w~~k~~~krN~i~~~Gp~~TGks~la~ai~~~ 136 (271)
T pfam01057 61 TKTALDYLAKPEVTANFDIEE-NRIYQLLSLNGYNPAEVG---QVLLAWLSKQGGKRNTVWFYGPASTGKTNLAQAIAHA 136 (271)
T ss_pred CCCHHHHHHCCCCCCCCCCCC-CHHHHHHHHCCCCHHHHH---HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 575999850678886566441-789999998499989999---9999998447888756999889876789999999986
Q ss_pred HCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCE
Q ss_conf 23300034426764201245555689889973898099993467776013100245415985873210478606871452
Q gi|254781225|r 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 (789)
Q Consensus 525 lG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~ 604 (789)
++.|.+..-. +.++-+..+.++.+..-.|.......- ..+|++.||..|....|+++. ++..+.-
T Consensus 137 ~~~~g~v~~~-------------N~~fp~~d~~~~~~~wwee~~~~~~~v-e~~r~il~G~~i~vD~k~k~~-~~l~~~P 201 (271)
T pfam01057 137 VPLYGCVNWT-------------NENFPFNDCPNKLLIWWEEGLMTVKVV-ELAKAILGGTDVRVDQKCKGS-VEIEPTP 201 (271)
T ss_pred CCCEEEECCC-------------CCCCCCCCCCCCEEEEECCCCCCHHHH-HHHHHHHCCCCCEEECCCCCC-CCCCCCC
T ss_conf 8952785178-------------778876446547899980788718899-999997299962563478980-0237997
Q ss_pred EEEEECCCCC-CCCC-------CCCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 8999738863-4267-------9841664689996588788878783342201204479999999
Q gi|254781225|r 605 TPFIVPNKHL-FVRN-------PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661 (789)
Q Consensus 605 ~~~~~~N~~P-~~~~-------~d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i~~w~l~ 661 (789)
. ++.+|+-- .+.+ +..++-.|+..+-|...++.. ...+...|....+.|+-.
T Consensus 202 v-iiTsn~di~~v~~g~~~s~~Ha~~Lk~rm~~~~~~~~l~~~----fg~it~~d~~~f~~W~~~ 261 (271)
T pfam01057 202 V-IITSNHDITLVVDGNTTSFEHAQPLKDRMYKFNLTKRLPPA----FGLITKEDVRQFLQWSEN 261 (271)
T ss_pred E-EEEECCCEEEEEECCCCCHHHHHHHHHHEEEEEECCCCCCC----CCCCCHHHHHHHHHHHHH
T ss_conf 8-99827857999868753577777876536898857674887----785489999999999860
No 12
>pfam04735 Baculo_helicase Baculovirus DNA helicase.
Probab=98.15 E-value=3.5e-06 Score=58.78 Aligned_cols=139 Identities=17% Similarity=0.272 Sum_probs=94.2
Q ss_pred HHHHH-CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 99997-59874337999970788625789999999723300034426764201245555689889973898099993467
Q gi|254781225|r 490 VGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 (789)
Q Consensus 490 ~g~~l-~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~ 568 (789)
+|.+| ++...+++++.+.|..+.|||+|.+|+..++=-+ .-+...-+..+ ...+.--+...-.-|=++.|..
T Consensus 867 F~ASLaIPtDYEK~clyL~g~PnsGKSSffELLd~iivvh---K~D~~~Y~~~k----ket~emev~k~~SQLYviNE~k 939 (1173)
T pfam04735 867 FCASLAIPTDYEKMCLYLNGKPNCGKSSFFELLDKIILVH---KHDKEKYTLSK----KETDEMEVKKLESQLYVINEAK 939 (1173)
T ss_pred HHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHEEEEE---ECCHHHCCCCC----CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6301168875211799914889997132899862058998---43555326888----8887889998874777888998
Q ss_pred CCCCCCCCEEEEEECC-CEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 7760131002454159-8587321047860687145289997388634267984166468999658878887
Q gi|254781225|r 569 ENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 (789)
Q Consensus 569 ~~~~~~~~~~K~ltgg-D~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~ 639 (789)
..+.+.||+..-. -.-+|+++|+-.. .|.-++|+++.-|.+..|.|-|.|...|+.+|=|++.|.+.
T Consensus 940 ---~cs~sffK~~ADSTKsdsv~rkY~g~q-kyeaNYK~lIvNNkpL~I~DYDkgv~NRf~ivY~DH~F~e~ 1007 (1173)
T pfam04735 940 ---KCSKSFFKSIADSTKSDSACRKYGGSE-KYEANYKLLIVNNKPLYISDYDKGVRNRFGQIYTDHEFEEN 1007 (1173)
T ss_pred ---HHHHHHHHCCCCCCCHHHHHHCCCHHH-HHHHCCEEEEECCCEEEEECCCHHHHHCEEEEEECCCCCCC
T ss_conf ---852887431333431021132143366-42300528998387037605655544224789723211438
No 13
>COG5545 Predicted P-loop ATPase and inactivated derivatives [General function prediction only]
Probab=98.13 E-value=3.8e-05 Score=51.93 Aligned_cols=182 Identities=18% Similarity=0.256 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHCC--CHHHH-----HHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 94789999988879--99999-----999999999975987433799997078862578999999972330003442676
Q gi|254781225|r 465 PSQEFLDLVSGYFE--SEEVM-----DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 (789)
Q Consensus 465 ~~p~~~~~l~~~~~--d~e~~-----~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~ 537 (789)
..|+.+..+...|| |.++. .|+--+++-++-++.+...+++|.|+-++|||||+. .|+|.|-.+-.....
T Consensus 159 ~v~r~~~l~~dyfGa~ds~l~~~~~k~f~VgAVarv~~Pg~K~Df~l~L~G~Qgs~KsTfl~---~l~G~~wftd~~~~~ 235 (517)
T COG5545 159 GVPRVETLLIDYFGASDSTLARQASKCFMVGAVARVLWPGAKVDFMLVLEGPQGSHKSTFLS---ELFGTYWFTDTAESP 235 (517)
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHH---HHCCCEEEECCCCCC
T ss_conf 96279898898727887389999998899999998737887520689974477777322699---861860340345588
Q ss_pred HHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCC
Q ss_conf 42012455556898899738980999934677760131002454159858732104786068714528999738863426
Q gi|254781225|r 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 (789)
Q Consensus 538 ~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~ 617 (789)
+ -..++..+.+.-.+-..|.+...+.+.+-||...+.-..+-|..|+.....|.-.+.++=.|||.--.+
T Consensus 236 -t---------~KD~~~~i~~~wive~~Em~s~~K~dvt~lK~fitr~~dsfRaPYgt~~e~y~r~~V~vgTTN~~Eylk 305 (517)
T COG5545 236 -T---------GKDFYQVIQGCWIVEIGEMDSFGKADVTALKVFITRRTDSFRAPYGTLPESYRRECVFVGTTNDREYLK 305 (517)
T ss_pred -C---------CCHHHHHHHHHHEEEHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEEEECCCHHHHHC
T ss_conf -8---------505999976553341055554268878999999987036301765688555466517972156687610
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7984166468999658878887878334220120447999999999999987889
Q gi|254781225|r 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 (789)
Q Consensus 618 ~~d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i~~w~l~g~~~~~~~g~~ 672 (789)
|.+.| ||+.+|.-.+.++.. .+ ..|.. .-|+- +..++.+|+.
T Consensus 306 D~TG~--RRFlpV~~~k~v~~~------~~-v~erD--q~Wae--aV~~y~~gf~ 347 (517)
T COG5545 306 DATGG--RRFLPVRADKNVDVS------RI-VAERD--QLWAE--AVQLYLDGFP 347 (517)
T ss_pred CCCCC--EEEEEEEECCCCCHH------HH-HHHHH--HHHHH--HHHHHHCCCC
T ss_conf 67787--367888765767655------54-46789--99999--9999864785
No 14
>pfam00519 PPV_E1_C Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508.
Probab=97.98 E-value=0.00012 Score=48.66 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCC
Q ss_conf 57947899999888799999999999999997598743379999707886257899999997233000344267642012
Q gi|254781225|r 463 GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 (789)
Q Consensus 463 ~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~ 542 (789)
+.....+.+||.- .+-+.+.||. .+-.-|-|..+ +.++.++|+.++|||.|..-|.+.||..-.+-+
T Consensus 228 ~GdWk~Iv~FLry--Q~iefi~Fl~-alk~fLkg~PK-knCivi~GPPnTGKS~F~mSLi~fL~G~ViSfv--------- 294 (432)
T pfam00519 228 EGDWKPIVKFLRY--QGIEFISFLS-ALKDFLKGIPK-KNCLVIYGPPDTGKSMFCMSLIKFLGGKVISFV--------- 294 (432)
T ss_pred CCCHHHHHHHHHH--CCCCHHHHHH-HHHHHHCCCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEE---------
T ss_conf 9976789888832--7713999999-99999648985-246999899996676899999998498699961---------
Q ss_pred CCCCCCCCHHHHHHCCCEEEEEECCCCC--CCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCC
Q ss_conf 4555568988997389809999346777--60131002454159858732104786068714528999738863426798
Q gi|254781225|r 543 PPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 (789)
Q Consensus 543 ~~~~~~~~~~la~l~g~r~~~~~E~~~~--~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d 620 (789)
++ ...|-|.-|..++++.++|.-.. ..+++ .+....-|.+|....||+.+. +.+-- -|++.||--+.-.+.=
T Consensus 295 --Ns-kShFWLqPL~daKiallDDAT~~CW~Y~D~-ylRN~LDGN~vsiD~KHkap~-QiK~P-PLLiTsNidv~~d~~~ 368 (432)
T pfam00519 295 --NS-KSHFWLQPLADAKIALLDDATHACWDYIDT-YLRNALDGNPVSIDRKHKAPV-QIKCP-PLLITSNIDVKADDRY 368 (432)
T ss_pred --CC-CCCCCCCCHHHCCEEEEECCCHHHHHHHHH-HHHHCCCCCCEEEECCCCCCH-HCCCC-CEEEEECCCCCCCCCH
T ss_conf --48-773022735327464220660888999999-876134788134552357742-02578-6588705787866321
Q ss_pred CCEEEEEEEEECCCCCC
Q ss_conf 41664689996588788
Q gi|254781225|r 621 DAWWRRYIVIPFDKPIA 637 (789)
Q Consensus 621 ~~~~rR~~iipF~~~~~ 637 (789)
.=+-.|+.++.|+++||
T Consensus 369 ~YLhSRi~~f~F~n~fP 385 (432)
T pfam00519 369 KYLHSRITVFEFPNPFP 385 (432)
T ss_pred HHHHHEEEEEECCCCCC
T ss_conf 53343168997489887
No 15
>pfam03288 Pox_D5 Poxvirus D5 protein-like. This family includes D5 from Poxviruses which is necessary for viral DNA replication, and is a nucleic acid independent nucleoside triphosphatase. Members of this family are also found outside of poxviruses. This domain is a DNA-binding winged HTH domain.
Probab=97.53 E-value=0.00016 Score=47.78 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=49.0
Q ss_pred HCCHHHHHHHHHEEECCCCEECHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHC
Q ss_conf 42638888754326268841117999999999998504667555-4525689999863
Q gi|254781225|r 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR-ISTRTVTLNLKQK 745 (789)
Q Consensus 689 ~~D~v~~fi~e~ce~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~-~s~~~~~~~l~~~ 745 (789)
++|+|..|+++||+......+++..+|.+|.+||+.+|- .+ ++.+.|.++|.+.
T Consensus 1 ~nD~v~dF~~~~~~~~~s~~vP~~~ly~~y~~~~e~~g~---~~~L~~~~F~~~l~~~ 55 (88)
T pfam03288 1 DNDPVPDFAEELFVLFKSDRVPSDFLYEAYKAWCEKNGY---VPVLSKRTFQQRLAKH 55 (88)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHHHHH
T ss_conf 986099999999764546407599999999999998599---7752177999999987
No 16
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.50 E-value=0.0053 Score=37.68 Aligned_cols=209 Identities=16% Similarity=0.167 Sum_probs=107.5
Q ss_pred CCCCCCCCHHHCCCCCCEEEECCCE---EECCC----CCCCCCC------HHHHCCEECCCCCCCCCCHHHHH----HHH
Q ss_conf 0000123202205797176607937---97438----8855898------65501001378888757947899----999
Q gi|254781225|r 411 AGSIFSITSDLLDSSSRFLGEQDGI---LDLET----GQKVKPT------KELYITKSTGTPFVEGEPSQEFL----DLV 473 (789)
Q Consensus 411 ~~~~~~~~~~~ld~~~~ll~~~NGv---~dl~t----~~~~~~~------~~~~~t~~~~~~y~~~a~~p~~~----~~l 473 (789)
+-..+....+.+|.+..++-..+|- +.... ..+.|++ ..+-+-.+++-++||....-... -..
T Consensus 52 ~p~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~pg~~V~l~~~~~~i~~~l~~~~d~~v~~m~v~e~P~v~~ 131 (390)
T PRK03992 52 PPLIVATVLEVLDDGRVVVKSSTGPQFVVTVSSFVDRDKLKPGARVALNQQTLAIVEVLPSEKDPRVRAMEVIESPDVTY 131 (390)
T ss_pred CCCEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99489999998379749999789987999657876888879999899853530305646888786211042147999984
Q ss_pred HHHCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 88879999999999999999759-------87433799997078862578999999972330003442676420124555
Q gi|254781225|r 474 SGYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 (789)
Q Consensus 474 ~~~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~ 546 (789)
++|=|=++.+.-+++.+=+-|.. +....+=++|||+.|+||+.+...+..-.|-.........+++. .-..+
T Consensus 132 ~dIGGl~~~k~el~E~velPl~~pe~f~~~Gi~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk-~vGes 210 (390)
T PRK03992 132 EDIGGLDEQIREVREAVELPLKNPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FIGEG 210 (390)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC-CCCHH
T ss_conf 66149899999999999998659899997699999727868989997899999999874888799667997524-54179
Q ss_pred C---CCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEE----EECC-CCCCEEEECCEEEEEECCCCCCCCC
Q ss_conf 5---689889973898099993467776013100245415985873----2104-7860687145289997388634267
Q gi|254781225|r 547 G---KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA----RLNY-GNTYSESPASFTPFIVPNKHLFVRN 618 (789)
Q Consensus 547 ~---~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~a----r~~~-~~~~~~~~p~~~~~~~~N~~P~~~~ 618 (789)
. ..-|++|+-..--+++++|.+. +...+.-.-++||.-.- ..+. -+.| .-.....++.+||+ ...
T Consensus 211 ek~vr~lF~~Ar~~aP~IiFiDEiDa---i~~~R~~~~~~g~~ev~r~l~qLL~emDG~-~~~~~V~VIaATNr---pd~ 283 (390)
T PRK03992 211 ARLVRELFELAREKAPSIIFIDEIDA---IAAKRTDSGTSGDREVQRTLMQLLAEMDGF-DPRGNVKIIAATNR---PDI 283 (390)
T ss_pred HHHHHHHHHHHHHHCCCEEEHHHHHH---HHCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCCEEEEEECCC---CHH
T ss_conf 99999999999970990897143256---633567788862088999999999974487-77788279960698---100
Q ss_pred CCCCEEE--EE
Q ss_conf 9841664--68
Q gi|254781225|r 619 PDDAWWR--RY 627 (789)
Q Consensus 619 ~d~~~~r--R~ 627 (789)
-|.|+.| |+
T Consensus 284 LDpAllRpGRF 294 (390)
T PRK03992 284 LDPALLRPGRF 294 (390)
T ss_pred CCHHHHCCCCC
T ss_conf 59777547765
No 17
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.22 E-value=0.0011 Score=42.11 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=46.6
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8879999999999999999759874337999970788625789999999723300
Q gi|254781225|r 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 475 ~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
++||-++.++-+-.++..+.-|.-..+..++|.||-|+|||||.+.|...|=.|.
T Consensus 52 ~~fG~e~~i~~~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ys 106 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYS 106 (361)
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 3116489999999999999844671256999988998877999999999999862
No 18
>KOG3712 consensus
Probab=97.20 E-value=0.0009 Score=42.76 Aligned_cols=11 Identities=9% Similarity=0.295 Sum_probs=7.0
Q ss_pred CCCHHHHHHHH
Q ss_conf 12044799999
Q gi|254781225|r 649 TKYTLEAKKWF 659 (789)
Q Consensus 649 ~~e~~~i~~w~ 659 (789)
......|+.||
T Consensus 573 lq~~s~ie~~a 583 (736)
T KOG3712 573 LQQQSDIEVWA 583 (736)
T ss_pred HHHHHHHHHHH
T ss_conf 98765899999
No 19
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=96.99 E-value=0.026 Score=33.07 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=75.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCCHHHHHHCCCCCCCCCCH
Q ss_conf 9888799999999999999997598743379999707886257899999997233000-344267642012455556898
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANP 551 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~~~~~~~~~~~~~~~~~~ 551 (789)
|++++|-+.+..-+..++-.+........- ++++|+.|.||+|+..+|.+.++.... .+.+ .+.... .-..
T Consensus 23 l~e~vGQehl~~~l~~~i~a~~~~~~~l~h-~lf~GPPG~GKTTlAriiAk~~~~~~~~~s~~--~i~~~~-----di~~ 94 (234)
T pfam05496 23 LDEYIGQEKVKENLKIFIEAAKKRGEALDH-VLLYGPPGLGKTTLANIIANEMGVNIRITSGP--ALEKPG-----DLAA 94 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCEEEECCH--HHHHHH-----HHHH
T ss_conf 666069499999999999988742777662-78878999988899999998408753761426--664389-----9999
Q ss_pred HHHHHCCCEEEEEECCCCCCCCC-CCEEEEEECCCE-EE-EEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf 89973898099993467776013-100245415985-87-3210478606871452899973886342679841664689
Q gi|254781225|r 552 SLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDC-MT-ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 (789)
Q Consensus 552 ~la~l~g~r~~~~~E~~~~~~~~-~~~~K~ltggD~-i~-ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~ 628 (789)
.+..+...-+.+++|...-.+.- +..+..+-.|-- |. ...........-.|.|+++.+|.+.+.+. ..+..|+-
T Consensus 95 ~l~~~~~~~ILFIDEIHr~nK~qqd~Llp~vE~g~i~i~ig~~~~A~~~~~e~P~FtLIgATTe~~~l~---~pl~sR~~ 171 (234)
T pfam05496 95 ILTNLEPGDVLFIDEIHRLNRAVEEILYPAMEDFRLDIVIGKGPSARSIRLDLPPFTLVGATTRAGLLT---SPLRDRFG 171 (234)
T ss_pred HHHHCCCCCEEEEECHHHCCHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCCCCCC---HHHHHHHH
T ss_conf 998458998899966543587688744553346169999636766324652689759985215666477---77997621
No 20
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.68 E-value=0.0043 Score=38.25 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=45.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8879999999999999999759874337999970788625789999999723300
Q gi|254781225|r 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 475 ~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
++||-++.++-+-.++..+..|.-..+..+.|.|+-|+|||+|.+.|...|=.|.
T Consensus 59 dffGme~~i~~iV~~~ksAA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y~ 113 (358)
T pfam08298 59 DFFGMEETIERIVNYFRHAAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELVP 113 (358)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 2001599999999999999723672105899977898775899999998720586
No 21
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.52 E-value=0.01 Score=35.73 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=73.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH-HHCCCCC---CCCCHHHHHHCCCCCCC
Q ss_conf 9988879999999999999999759874337999970788625789999999-7233000---34426764201245555
Q gi|254781225|r 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYV---INAEASDIMQNRPPEAG 547 (789)
Q Consensus 472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~-llG~~~~---~~~~~~~~~~~~~~~~~ 547 (789)
-|+++.|.++.++.++.++- .+... + ++++|+.|.||+|+..++.+ ++|+... .-.+.+. .++- .
T Consensus 14 ~l~di~g~~~~~~~L~~~i~---~~~~p-h--lLf~GppG~GKTt~a~~la~~l~~~~~~~~~lelnasd---~r~i--d 82 (318)
T PRK00440 14 SLDEVVGQEEIVERLKSFVK---EKNMP-H--LLFAGPPGTGKTTAALALARELYGEYWRENFLELNASD---ERGI--D 82 (318)
T ss_pred CHHHHCCCHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCC---CCCH--H
T ss_conf 89994196999999999998---79986-6--98889599889999999999976986434768951645---6671--7
Q ss_pred CCCH---HHHHH---CC--CEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCC
Q ss_conf 6898---89973---89--8099993467776013100245415985873210478606871452899973886342679
Q gi|254781225|r 548 KANP---SLIRL---MG--SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619 (789)
Q Consensus 548 ~~~~---~la~l---~g--~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~ 619 (789)
-.+. +.++. .+ .++++++|.+.-..-....+ | +...++..+..+++.||+.-++-
T Consensus 83 ~vr~~i~~~~~~~~~~~~~~kiiiiDE~d~l~~~aq~aL-----------~----~~mE~~~~~~~fil~~n~~~kii-- 145 (318)
T PRK00440 83 VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQAL-----------R----RTMEMYSQTTRFILSCNYSSKII-- 145 (318)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHH-----------H----HHHHCCCCCCEEEEECCCCCCCC--
T ss_conf 899999999972677899738999868553225567888-----------7----64310566625886348833376--
Q ss_pred CCCEEEEEEEEECCCC
Q ss_conf 8416646899965887
Q gi|254781225|r 620 DDAWWRRYIVIPFDKP 635 (789)
Q Consensus 620 d~~~~rR~~iipF~~~ 635 (789)
..+-.|...|.|+..
T Consensus 146 -~~i~SRc~~i~f~~~ 160 (318)
T PRK00440 146 -DPIQSRCAVFRFSPL 160 (318)
T ss_pred -CCHHHHHEEEECCCC
T ss_conf -155655101115789
No 22
>pfam02257 RFX_DNA_binding RFX DNA-binding domain. RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer.
Probab=96.34 E-value=0.012 Score=35.31 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=52.1
Q ss_pred HHHHHHHHEEECCCCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 8888754326268841117999999999998504667555452568999986354233310010256765
Q gi|254781225|r 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 (789)
Q Consensus 693 v~~fi~e~ce~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 762 (789)
--+||.+.||..++..++...+|..|..+|+++. .+|++..+|++-++.. | .+++..+...++++
T Consensus 8 a~~WL~~~~e~~~~~~lPR~~vY~~Y~~~C~~~~---~~pl~~AsFGKliR~v-F-P~lktRRLGtRG~S 72 (73)
T pfam02257 8 ALQWLRDNCEESEGSSLPRNRVYAHYVSHCAELG---LKPLSAASFGKLIRSV-F-PGLKTRRLGTRGQS 72 (73)
T ss_pred HHHHHHHHCEECCCCCCCCHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHH-C-CCCCCCCCCCCCCC
T ss_conf 9999997744289972350899999999999739---9747787899999998-8-89630105667788
No 23
>KOG0743 consensus
Probab=96.27 E-value=0.02 Score=33.83 Aligned_cols=87 Identities=14% Similarity=0.218 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCC
Q ss_conf 99999999999999759874337999970788625789999999723300034426764201245555689889973898
Q gi|254781225|r 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 (789)
Q Consensus 480 ~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~ 559 (789)
+++.+|+..---|.=+|. ....=..||||.|.|||+|+..|.+-|+ |.+-.+.++.... ++ .-+-=|....++
T Consensus 215 ~Dl~~F~k~k~~YkrvGk-awKRGYLLYGPPGTGKSS~IaAmAn~L~-ydIydLeLt~v~~----n~-dLr~LL~~t~~k 287 (457)
T KOG0743 215 DDLDDFIKGKDFYKRVGK-AWKRGYLLYGPPGTGKSSFIAAMANYLN-YDIYDLELTEVKL----DS-DLRHLLLATPNK 287 (457)
T ss_pred HHHHHHHHCCHHHHHCCC-CCCCCCEEECCCCCCHHHHHHHHHHHCC-CCEEEEEECCCCC----CH-HHHHHHHHCCCC
T ss_conf 999999722357886484-5000412047999988899999972058-7367744002368----38-999999728997
Q ss_pred EEEEEECCCCCCCC
Q ss_conf 09999346777601
Q gi|254781225|r 560 RIVIISETNENDEI 573 (789)
Q Consensus 560 r~~~~~E~~~~~~~ 573 (789)
-++++.|.+..--+
T Consensus 288 SIivIEDIDcs~~l 301 (457)
T KOG0743 288 SILLIEDIDCSFDL 301 (457)
T ss_pred CEEEEEECCCCCCC
T ss_conf 18999612432304
No 24
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=96.17 E-value=0.0048 Score=37.93 Aligned_cols=79 Identities=20% Similarity=0.242 Sum_probs=49.2
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECC----CCCCCCC
Q ss_conf 3379999707886257899999997233000-3442676420124555568988997389809999346----7776013
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET----NENDEIN 574 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~----~~~~~~~ 574 (789)
.--|+|++|+.|.|||||++||...+-.+.. ..+.-..++.- ..-+|+.|+-+-=++++|- +..-.-|
T Consensus 27 kG~F~FLtG~SGAGKttLLKLl~~~~~P~~G~v~~~G~~~~~l-------~~~~~P~LRR~iGvvFQDf~LL~~rTv~eN 99 (215)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRVAGEDVSRL-------RGRQLPLLRRRIGVVFQDFRLLPDRTVYEN 99 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEECCCC-------CCCCCHHHHCCCCEEEECCCCCCCCCHHHH
T ss_conf 7740788727786178999999852698758088887404667-------756431221315437842211011661341
Q ss_pred CCEEEEEECCC
Q ss_conf 10024541598
Q gi|254781225|r 575 AAKIKQMTGGD 585 (789)
Q Consensus 575 ~~~~K~ltggD 585 (789)
.+.-=.+.|-.
T Consensus 100 VAl~L~V~G~~ 110 (215)
T TIGR02673 100 VALPLEVRGKK 110 (215)
T ss_pred CCHHHHCCCCC
T ss_conf 12101113888
No 25
>PRK04195 replication factor C large subunit; Provisional
Probab=96.12 E-value=0.028 Score=32.87 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=77.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHH------HHHCCCCC
Q ss_conf 998887999999999999999975987433799997078862578999999972330003442676------42012455
Q gi|254781225|r 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD------IMQNRPPE 545 (789)
Q Consensus 472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~------~~~~~~~~ 545 (789)
.+.++.+++..++-+..|+-.-+.|.. .++.++++||.|.||+|+..+|.+-+|-. +.-.+.+. +..--...
T Consensus 12 ~~~divg~~~~v~~l~~Wl~~w~~g~~-~~k~lLL~GPpGvGKTT~a~~lAk~~g~~-viElNASD~R~~~~I~~~i~~~ 89 (403)
T PRK04195 12 SLSDVVGNEKAKKQLREWIESWLKGKP-PKKALLLYGPPGVGKTSLAHALANDYGWE-VIELNASDQRTKDVIERVAGEA 89 (403)
T ss_pred CHHHHHCCHHHHHHHHHHHHHHHCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEECCCCCCCHHHHHHHHHHH
T ss_conf 899985889999999999999873996-57469988939987999999999984998-5997710114789999999987
Q ss_pred CCCCCHHHHHHC--CCEEEEEECCCCCCC-CCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCC
Q ss_conf 556898899738--980999934677760-13100245415985873210478606871452899973886342679841
Q gi|254781225|r 546 AGKANPSLIRLM--GSRIVIISETNENDE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 (789)
Q Consensus 546 ~~~~~~~la~l~--g~r~~~~~E~~~~~~-~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~ 622 (789)
+. + ..+. .+++++++|.+.-.. -+.+-+..|. ..-++. ..-+++.||+.-.. .-..
T Consensus 90 ~~--~---~sl~~~~~KlIIlDEvD~l~~~~d~gg~~al~--------~~ik~s------~~PiIli~Nd~~~~--~~~~ 148 (403)
T PRK04195 90 ST--S---GSLFGAKRKLILLDEVDGIHGNADRGGVRAIL--------EIIKKA------KNPIILTANDPYDP--SLRP 148 (403)
T ss_pred HH--C---CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH--------HHHHCC------CCEEEEEECCCCCC--CHHH
T ss_conf 60--6---88778873499963434457244479999999--------998548------87089982684556--7177
Q ss_pred EEEEEEEEECCCCC
Q ss_conf 66468999658878
Q gi|254781225|r 623 WWRRYIVIPFDKPI 636 (789)
Q Consensus 623 ~~rR~~iipF~~~~ 636 (789)
+-.|..+|.|...-
T Consensus 149 lrs~c~~i~F~~~~ 162 (403)
T PRK04195 149 LRNACLMIEFKRLS 162 (403)
T ss_pred HHHHHHHCCCCCCC
T ss_conf 99766122179949
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.11 E-value=0.095 Score=29.33 Aligned_cols=273 Identities=16% Similarity=0.134 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC---------CCCCC-H-----HH---HHH
Q ss_conf 999999999999999759874337999970788625789999999723300---------03442-6-----76---420
Q gi|254781225|r 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY---------VINAE-A-----SD---IMQ 540 (789)
Q Consensus 479 d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~---------~~~~~-~-----~~---~~~ 540 (789)
|+| ++-+..++.-++.|.... -++++|+.|.|||+....+..-+.... +.... . .+ +.+
T Consensus 36 e~E-i~~l~~~l~~~l~g~~~~--n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~~~i~~~L~~ 112 (394)
T PRK00411 36 EEQ-IEELAFALRPALRGSRPS--NVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAILSEIARSLFG 112 (394)
T ss_pred HHH-HHHHHHHHHHHHCCCCCC--CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999-999999999997599998--47998899998999999999999974689659999696689899999999999569
Q ss_pred CCCCCCCCCCHHHHH-----H--CC-CEEEEEECCCCCCCCC-CCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECC
Q ss_conf 124555568988997-----3--89-8099993467776013-1002454159858732104786068714528999738
Q gi|254781225|r 541 NRPPEAGKANPSLIR-----L--MG-SRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 (789)
Q Consensus 541 ~~~~~~~~~~~~la~-----l--~g-~r~~~~~E~~~~~~~~-~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N 611 (789)
...+..|-+..++.. + .+ ..+++.+|.+.=..-+ ...+-+|+ |- +.. . -.....++..+|
T Consensus 113 ~~~p~~G~s~~~~~~~l~~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~-------r~-~~~-~--~~~~~~vI~IsN 181 (394)
T PRK00411 113 HPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLVEKEGNDVLYSLL-------RA-HEE-Y--PGARIGVIGISS 181 (394)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHH-------HC-CCC-C--CCCCEEEEEEEC
T ss_conf 989877878999999999986166975899996554020366508999998-------54-022-6--887389999976
Q ss_pred CCCCCCCCCCCEEEEE--EEEECCC----CCC----CC------CCCHHHHHC------CCCHHHHHHHHHHHHHH----
Q ss_conf 8634267984166468--9996588----788----87------878334220------12044799999999999----
Q gi|254781225|r 612 KHLFVRNPDDAWWRRY--IVIPFDK----PIA----NR------DASFAQKLE------TKYTLEAKKWFLKGVKA---- 665 (789)
Q Consensus 612 ~~P~~~~~d~~~~rR~--~iipF~~----~~~----~~------d~~~~~~~~------~~e~~~i~~w~l~g~~~---- 665 (789)
.+.-..--|.-+-.|+ ..|.|+- ++. .+ +.-+.+.-. .....|=...||+-|++
T Consensus 182 ~~~~~~~Ldprv~S~l~~~~i~F~PY~~~qL~~IL~~R~~~af~~gv~~~~~i~~~A~~~a~~~GDaR~Aldllr~A~e~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFGPEEIVFPPYTADEIFDILKDRVEEGFYPGVVSDEVLELIADLTGREHGDARVAIDLLRRAGEI 261 (394)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 87177664077750278628985899989999999999984145567897899999999855047589999999999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH-----------EEE--CCCCEECHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99878898878899999999998426388887543-----------262--68841117999999999998504667555
Q gi|254781225|r 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC-----------CDI--GENLWEESHSLAKSYSEYREQELNYDRKR 732 (789)
Q Consensus 666 ~~~~g~~~~~p~~v~~a~~~y~~~~D~v~~fi~e~-----------ce~--~~~~~~~~~~l~~~y~~~~~~~~~~~~~~ 732 (789)
..++|......+.|+.|.++. +.+.+..-|... |.. .....+..+++|+.|...|+.. +.++
T Consensus 262 Ae~~g~~~Vt~~hV~~A~~~~--~~~~~~~~i~~L~~~~klvL~ai~~~~~~~~~~~~~g~vy~~Y~~lc~~~---~~~~ 336 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKS--EPVHLEEVLRTLPLHEKLLLLAIVRLLEKGAPYVTTGEVYEEYKELCEEL---GYEP 336 (394)
T ss_pred HHHHCCCCCCHHHHHHHHHHH--HCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC---CCCC
T ss_conf 997189965899999999986--00008899873899899999999998517887663899999999999973---9988
Q ss_pred CCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEC
Q ss_conf 4525689999863542333100102567652089979865
Q gi|254781225|r 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 (789)
Q Consensus 733 ~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~~Gi~Lk 772 (789)
++.+.|..-+.++...|-+..+...++ +.+|. +-+.|.
T Consensus 337 ls~~~~~~~l~~L~~~giI~~~~~~~G-~~Gr~-~~i~L~ 374 (394)
T PRK00411 337 RSHTRFYEYLNKLDMLGLINTRYTGKG-GRGRT-RLISLS 374 (394)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCC-CCCCE-EEEEEC
T ss_conf 879999999999986798588875488-88852-699962
No 27
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=96.05 E-value=0.0042 Score=38.36 Aligned_cols=123 Identities=15% Similarity=0.233 Sum_probs=58.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHC-CCCCCC--CCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEE
Q ss_conf 99970788625789999999723300034426764201-245555--689889973898099993467776013100245
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN-RPPEAG--KANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~-~~~~~~--~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ 580 (789)
++++|+-|+|||++.+.+.+-+|-.... .+...+... .+.... ..-++.|+.....+++++|.+.--. ..-+.
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~-v~~~~~~~~~~g~~~~~i~~~f~~a~~~~p~Il~iDe~d~l~~---~~~~~ 76 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIE-ISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAG---SRGSG 76 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEE-CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHC---CCCCC
T ss_conf 9878999999999999999997898533-2420122233450688899999999974991898311677751---67888
Q ss_pred EEC-CCEEEEEEC-CCCCCEEEECCEEEEEECCCCCCCCCCCCCEEE-EE-EEEECC
Q ss_conf 415-985873210-478606871452899973886342679841664-68-999658
Q gi|254781225|r 581 MTG-GDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-RY-IVIPFD 633 (789)
Q Consensus 581 ltg-gD~i~ar~~-~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~r-R~-~iipF~ 633 (789)
-.+ ...+....+ .-+.+..-.....++.+||++- .-|.++.| |+ .+|.|+
T Consensus 77 ~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~---~ld~al~r~Rfd~~i~~p 130 (131)
T pfam00004 77 GDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPD---KLDPALLRGRFDRIIEFP 130 (131)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHH---HCCHHHHCCCCEEEEEEC
T ss_conf 887513268789999850224688769999759904---499779628332899806
No 28
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein; InterPro: IPR013505 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=95.94 E-value=0.0065 Score=37.07 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 337999970788625789999999723
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
.--|.|+.|..|+|||||++||..+--
T Consensus 28 kGem~fL~GHSGaGKST~lkLi~~~~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTLLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 850799856888607899999985228
No 29
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.86 E-value=0.012 Score=35.35 Aligned_cols=122 Identities=18% Similarity=0.186 Sum_probs=63.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC--CCCCCCCCHHHHHH-CCCCCCC-----CCCHHHHHHCCCEEEEEECCCCCC
Q ss_conf 337999970788625789999999723--30003442676420-1245555-----689889973898099993467776
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG--NQYVINAEASDIMQ-NRPPEAG-----KANPSLIRLMGSRIVIISETNEND 571 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG--~~~~~~~~~~~~~~-~~~~~~~-----~~~~~la~l~g~r~~~~~E~~~~~ 571 (789)
...-++++|+.|.|||++...|...++ .+.....+...+.. ....... .............+++++|.+.-.
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCC
T ss_conf 99808998999988659999999971213798278547770467777576057788989999997699869820166559
Q ss_pred C-CCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE-EEEEC
Q ss_conf 0-1310024541598587321047860687145289997388634267984166468-99965
Q gi|254781225|r 572 E-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-IVIPF 632 (789)
Q Consensus 572 ~-~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~-~iipF 632 (789)
. .....+..|-- .. . .........++++||+.+. .+.+.+++.|+ ..|.|
T Consensus 98 ~~~~~~~~~~l~~--------~~-~-~~~~~~~~~vI~~tn~~~~-~~~~~~~~~R~~~~i~~ 149 (151)
T cd00009 98 RGAQNALLRVLET--------LN-D-LRIDRENVRVIGATNRPLL-GDLDRALYDRLDIRIVI 149 (151)
T ss_pred HHHHHHHHHHHHH--------HC-C-CCCCCCCEEEEEEECCCCC-CCHHHHHHCCCCEEEEC
T ss_conf 9999999999987--------15-7-5406788899995289988-68377642559869863
No 30
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=95.78 E-value=0.015 Score=34.67 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=63.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHH-CC-CCCCCC----CHHHHHHCCCCCCCC----CCHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 9997078862578999999972-33-000344----267642012455556----8988997389809999346777601
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAF-GN-QYVINA----EASDIMQNRPPEAGK----ANPSLIRLMGSRIVIISETNENDEI 573 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ll-G~-~~~~~~----~~~~~~~~~~~~~~~----~~~~la~l~g~r~~~~~E~~~~~~~ 573 (789)
++++|+.+.|||++...+...+ |. +..... +...+.+......+. ..+-+..+....+++++|.+.-..-
T Consensus 2 vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~dl~G~~~~~~~~~~~~~g~l~~a~~~g~vl~lDEin~a~~~ 81 (139)
T pfam07728 2 VLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIANGTTSWVDGPLVRAAREGEIAVLDEINRANPD 81 (139)
T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHCCCCEECCCCCEEEECCHHHCCCCCCCEEEECCHHHCCHH
T ss_conf 89998997569999999999807983111214655652220573423799357815514101012868996343448999
Q ss_pred CCCEEEEEECCCEEEEEEC----CCCCCEEEECCEEEEEECCCCCC-CCCCCCCEEEEE
Q ss_conf 3100245415985873210----47860687145289997388634-267984166468
Q gi|254781225|r 574 NAAKIKQMTGGDCMTARLN----YGNTYSESPASFTPFIVPNKHLF-VRNPDDAWWRRY 627 (789)
Q Consensus 574 ~~~~~K~ltggD~i~ar~~----~~~~~~~~~p~~~~~~~~N~~P~-~~~~d~~~~rR~ 627 (789)
-...|-++.-...+..-.. .... ....+.|.+|.++|..+. ...-|.|+.+|+
T Consensus 82 v~~~L~~~le~~~~~~~~~~~~~~~~~-~~~~~~f~viaT~N~~~~g~~~l~~Al~~RF 139 (139)
T pfam07728 82 VLNSLLSLLDERRLLLPEGGELVKVAP-DDFAKRFRLIATMNPLDRGLNELSPALRSRF 139 (139)
T ss_pred HHHHHHHHHCCCEEEECCCCEEECCCC-CCCCCCEEEEEEECCCCCCCCCCCHHHHCCC
T ss_conf 999999997489698368972733666-6789996999975896547800998997509
No 31
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.74 E-value=0.065 Score=30.44 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=27.4
Q ss_pred EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 02454159858732104786068714528999738863426798416646899965
Q gi|254781225|r 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 (789)
Q Consensus 577 ~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF 632 (789)
.-+.+-.|+.|.++- ++.+| .-...+-+-+.+...++|.+ ||-..+-.
T Consensus 387 l~~wl~kg~ei~~~l-ng~gf---~~~l~~evd~~~~L~i~Dis----~~~~~l~l 434 (498)
T PRK13531 387 LEQWLSKGGEIRGKL-NGIGF---AQKLNLEVDSAQHLVVRDVS----LQGSTLAL 434 (498)
T ss_pred HHHHHHCCCEEEEEE-CCCCC---CEEEEEEECCCCCEEEEECC----CCCEEEEE
T ss_conf 888874298479985-58887---50356777555766787426----78435772
No 32
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.15 Score=28.06 Aligned_cols=208 Identities=16% Similarity=0.171 Sum_probs=114.3
Q ss_pred CCCCCCCCCHHHCCCCCCEEEECCC---EEECCCC----CCCCC------CHHHHCCEECCCCCCCCCCHHHHHH----H
Q ss_conf 1000012320220579717660793---7974388----85589------8655010013788887579478999----9
Q gi|254781225|r 410 EAGSIFSITSDLLDSSSRFLGEQDG---ILDLETG----QKVKP------TKELYITKSTGTPFVEGEPSQEFLD----L 472 (789)
Q Consensus 410 ~~~~~~~~~~~~ld~~~~ll~~~NG---v~dl~t~----~~~~~------~~~~~~t~~~~~~y~~~a~~p~~~~----~ 472 (789)
.+-..+....+.+|.+..++....| |+.+... .+.|+ ...+-+-.++|-++||....-..++ .
T Consensus 70 ~~pl~vg~v~e~id~~~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~Pdvt 149 (406)
T COG1222 70 EPPLIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVT 149 (406)
T ss_pred CCCCEEEEEEEECCCCEEEEEECCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCHHHEEEECCCCCCC
T ss_conf 89956899999817861899707997188734687698786998889985776145661787557620200112589878
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 988879999999999999999759-------8743379999707886257899999997233000344267642012455
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~ 545 (789)
..+|=|=++.++=+.+.+-.-|.. +....+=++|||+.|+||+.+...+.+--.....-.+...+. ++.-..
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV-qKYiGE 228 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV-QKYIGE 228 (406)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHH-HHHHCC
T ss_conf 6533588999999999840336688899974999997127668999758899999872058669994219999-998341
Q ss_pred CC---CCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECC-----CCCCEEEECCEEEEEECCCCCCCC
Q ss_conf 55---6898899738980999934677760131002454159858732104-----786068714528999738863426
Q gi|254781225|r 546 AG---KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY-----GNTYSESPASFTPFIVPNKHLFVR 617 (789)
Q Consensus 546 ~~---~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~-----~~~~~~~~p~~~~~~~~N~~P~~~ 617 (789)
+. .--|.+|+-+---+++++|.+. +.+.++-+-||||.=.-|-+- -+.| .-.-..+++++||. +.
T Consensus 229 GaRlVRelF~lArekaPsIIFiDEIDA---Ig~kR~d~~t~gDrEVQRTmleLL~qlDGF-D~~~nvKVI~ATNR---~D 301 (406)
T COG1222 229 GARLVRELFELAREKAPSIIFIDEIDA---IGAKRFDSGTSGDREVQRTMLELLNQLDGF-DPRGNVKVIMATNR---PD 301 (406)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECHHH---HHCCCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCEEEEEECCC---CC
T ss_conf 169999999987414984999831122---311113688885099999999999860588-97887689985588---55
Q ss_pred CCCCCEEE
Q ss_conf 79841664
Q gi|254781225|r 618 NPDDAWWR 625 (789)
Q Consensus 618 ~~d~~~~r 625 (789)
--|.|+-|
T Consensus 302 ~LDPALLR 309 (406)
T COG1222 302 ILDPALLR 309 (406)
T ss_pred CCCHHHCC
T ss_conf 55766508
No 33
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.32 E-value=0.016 Score=34.41 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=15.5
Q ss_pred CEEEECCCCCCCCCCEEECCCCC--CCCCCCCCCCCHHHHHHHHH
Q ss_conf 43880477688887457517765--58722164689999999997
Q gi|254781225|r 133 QYFVAYNIHPKTKKEYTWTTPPH--RFKVEDTPLLSEEDVEYLFK 175 (789)
Q Consensus 133 ~q~V~~gshp~Tg~~Y~w~~~~~--~~~~~~~P~i~~~~~~~l~~ 175 (789)
+.++.-|+ .|-.||.-+++.. -..+-.+-.++...+..+++
T Consensus 136 G~i~LIGA--TTENP~F~vn~ALlSR~~vf~L~~L~~~dl~~il~ 178 (726)
T PRK13341 136 GTVTLIGA--TTENPYFEVNKALVSRSRLFRLKSLEDEDLHQLLK 178 (726)
T ss_pred CEEEEEEE--CCCCCCEEECHHHHHHCEEEEECCCCHHHHHHHHH
T ss_conf 83899970--47897436429888323466743899999999999
No 34
>pfam06431 Polyoma_lg_T_C Polyomavirus large T antigen C-terminus.
Probab=94.60 E-value=0.3 Score=26.04 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=98.2
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEE
Q ss_conf 9999999997598743379999707886257899999997233000-344267642012455556898899738980999
Q gi|254781225|r 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 (789)
Q Consensus 485 ~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~ 563 (789)
.+++++- +++-+...+..+++.||=++||+|+...|..++|..+- +..+. ..-+|||......-+|+
T Consensus 140 ~i~~~lk-~~v~N~PKkRy~lFkGPvNsGKTTlAAAlldLcgGkaLNIN~P~-----------dkL~FELG~AIDQfmVv 207 (417)
T pfam06431 140 VIYDFLK-CIVYNIPKKRYWLFKGPIDSGKTTLAAALLDLCGGKALNVNLPL-----------ERLNFELGVAIDQFMVV 207 (417)
T ss_pred HHHHHHH-HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCH-----------HHCCHHHCCEEEEEEEE
T ss_conf 9999999-99618874115887678677748799999986368612047985-----------64453530021104788
Q ss_pred EECCCCCCCC-C----CC----EEE----EEECCCEEEEEECCCCCCEE-EECCEEEEEECCCCCCCCCCCCCEEEEE-E
Q ss_conf 9346777601-3----10----024----54159858732104786068-7145289997388634267984166468-9
Q gi|254781225|r 564 ISETNENDEI-N----AA----KIK----QMTGGDCMTARLNYGNTYSE-SPASFTPFIVPNKHLFVRNPDDAWWRRY-I 628 (789)
Q Consensus 564 ~~E~~~~~~~-~----~~----~~K----~ltggD~i~ar~~~~~~~~~-~~p~~~~~~~~N~~P~~~~~d~~~~rR~-~ 628 (789)
..++. |..- + .+ .+- -|-|-=++.-++||.+.-++ |+|. ++.+|+-..-.. ++-|+ .
T Consensus 208 FEDVK-Gq~~~~k~Lp~G~Gi~NLDNLRDyLDGsV~VNLEKKH~NKrsQIFPPg---IVTmNeY~iP~T----l~~RF~~ 279 (417)
T pfam06431 208 FEDVK-GTGAESRDLPSGHGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKT----LQARFVR 279 (417)
T ss_pred EEECC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCEEECHHHHHCCCCCCCCCCC---EEEECCCCCCHH----HHHHHHH
T ss_conf 75247-876655689999885321557775157411034453036653148996---663056666266----7656440
Q ss_pred EEECCCCCCCCCCCHHHHHCCCCHHHH-------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf 996588788878783342201204479-------9999999999998788988788999999999984263
Q gi|254781225|r 629 VIPFDKPIANRDASFAQKLETKYTLEA-------KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 (789)
Q Consensus 629 iipF~~~~~~~d~~~~~~~~~~e~~~i-------~~w~l~g~~~~~~~g~~~~~p~~v~~a~~~y~~~~D~ 692 (789)
+|.|.. ..++.+-|...|.... +.++| ++.|..---.| -+++.+....|++.-|.
T Consensus 280 ~l~F~~-----k~~L~~sL~~~~~l~~~RILQSG~TlLL--lLIw~~pv~~F--~~~iq~~V~~WKe~ld~ 341 (417)
T pfam06431 280 QIDFRP-----KDYLRKSLERSEFLLEKRILQSGMTLLL--LLIWFRPVADF--AQSIQSRIVEWKERLDK 341 (417)
T ss_pred EECCCH-----HHHHHHHHHCCHHHHHHHHHHCCHHHHH--HHHHHCCHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 235765-----6999999851889989999701389999--99996868777--69999999999999998
No 35
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.55 E-value=0.17 Score=27.61 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=46.8
Q ss_pred EEECCCCCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCH
Q ss_conf 79743888558986550100137888875794789999988879999999999999999759874337999970788625
Q gi|254781225|r 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514 (789)
Q Consensus 435 v~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGK 514 (789)
.+-++.....+.+.++|...-+--.-............|.+.+.+.++.+||+.++ +..+=+++.|..++||
T Consensus 102 ~ltIRk~~~~~~tl~dl~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~fL~~aV--------~~r~NilI~G~TgSGK 173 (332)
T PRK13900 102 IYSIRKPSGMQLTLDDYEKMGAFDETATESLVDEDDVILNELLAEKKIKEFLEHAV--------ISKKNIIISGGTSTGK 173 (332)
T ss_pred EEEEECCCCCCCCHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--------HCCCCEEEECCCCCCH
T ss_conf 79997888888999999864986655542013415677887641057999999998--------6487199988889889
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 7899999997233
Q gi|254781225|r 515 STLMNLIKYAFGN 527 (789)
Q Consensus 515 St~~~~l~~llG~ 527 (789)
+||++.|...+..
T Consensus 174 TTll~aL~~~ip~ 186 (332)
T PRK13900 174 TTFTNAALREIPA 186 (332)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999835895
No 36
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.41 E-value=0.16 Score=27.78 Aligned_cols=92 Identities=12% Similarity=0.191 Sum_probs=63.7
Q ss_pred EECCC-EE--ECCCCCCCCCCHHHHCCEEC-----CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 60793-79--74388855898655010013-----788887579478999998887999999999999999975987433
Q gi|254781225|r 430 GEQDG-IL--DLETGQKVKPTKELYITKST-----GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501 (789)
Q Consensus 430 ~~~NG-v~--dl~t~~~~~~~~~~~~t~~~-----~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~ 501 (789)
+|.+| ++ =++...+...+-+||-..-. ++.-....++..+++=|.+.....+..+||..++ ..+
T Consensus 87 Ac~~~eTvs~tIRKpS~~~~sL~dy~~~G~F~~ar~~~~~~~~~~~d~~~~L~el~~~g~~~~Fl~~Ai--------~~~ 158 (328)
T TIGR02788 87 ACENDETVSITIRKPSLVDLSLDDYEEKGFFDTARAVVVPASTELSDKDEELLELLDAGDIKEFLRLAI--------ASR 158 (328)
T ss_pred CCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH--------HCC
T ss_conf 758988589999526444554799962798544777631443443468999999986288879999998--------738
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 7999970788625789999999723300
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
+=+|+.|..++||+||+|.|-+.++..-
T Consensus 159 knIii~GGTgSGKTTf~kal~~~IP~~E 186 (328)
T TIGR02788 159 KNIIISGGTGSGKTTFLKALVKEIPKDE 186 (328)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 9199990689718999999973276225
No 37
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=94.08 E-value=0.062 Score=30.57 Aligned_cols=221 Identities=14% Similarity=0.172 Sum_probs=124.7
Q ss_pred CCCCCCCCCHHHCCCCCCEEEECCC---EEECC----CCCCCCCCH------HHHCCEECCCCCCCCCCHHHHHH----H
Q ss_conf 1000012320220579717660793---79743----888558986------55010013788887579478999----9
Q gi|254781225|r 410 EAGSIFSITSDLLDSSSRFLGEQDG---ILDLE----TGQKVKPTK------ELYITKSTGTPFVEGEPSQEFLD----L 472 (789)
Q Consensus 410 ~~~~~~~~~~~~ld~~~~ll~~~NG---v~dl~----t~~~~~~~~------~~~~t~~~~~~y~~~a~~p~~~~----~ 472 (789)
.|-....+..+.+|.+.-.+--.+| |++.. ..+|.|+.. ..-+--++|..+||....=+..+ +
T Consensus 41 ~PP~~~~~V~~~~~~~rvvVks~tGP~fvv~~~~~i~~~~L~PG~~VaLn~~t~~iV~vLP~~kDp~v~~~EV~E~P~V~ 120 (364)
T TIGR01242 41 SPPLIVGTVVEVLDDDRVVVKSSTGPKFVVNVSAFIDRKELKPGARVALNQQTLAIVDVLPTSKDPLVKGMEVEERPNVS 120 (364)
T ss_pred CCCEEEEEEEEEECCCEEEEECCCCCEEEEEHHCCCCHHHCCCCCEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCEE
T ss_conf 89827887543214863799637985000000012362026886567423784289984678878657877762178233
Q ss_pred HHHHCCCHHHHHHHHHHHHHHH--------CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 9888799999999999999997--------59874337999970788625789999999723300034426764201245
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMAL--------LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l--------~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~ 544 (789)
.++|=|=++-++=+.+.+-.=| +| ..-.+=+.||||.|.||+.+...+.+=.-..++-.+...+..+--|.
T Consensus 121 y~diGGL~~Q~~E~~E~v~LPlk~PeLF~~vG-I~PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvVgSElV~KyIGE 199 (364)
T TIGR01242 121 YEDIGGLEKQIREIREAVELPLKKPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGE 199 (364)
T ss_pred EECCCCHHHHHHHHHHHHHCCCCCCHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCC
T ss_conf 40267878999999888734688831677628-89898657007579768899998631455126886044444444133
Q ss_pred CC--CCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCC-----CCCEEEECCEEEEEECCCCCCCC
Q ss_conf 55--568988997389809999346777601310024541598587321047-----86068714528999738863426
Q gi|254781225|r 545 EA--GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-----NTYSESPASFTPFIVPNKHLFVR 617 (789)
Q Consensus 545 ~~--~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~-----~~~~~~~p~~~~~~~~N~~P~~~ 617 (789)
.+ -..-|.||+=+-=-+++++|.+ .+.+-+++..||||.=.-|-+-+ +.| +-.-..+++-+||.+=.+.
T Consensus 200 GArLV~~~F~LAkEKaPsIiFIDEiD---AiaakR~~~~TsGdREV~RTlmQLLAElDGF-d~rg~VkviaATNR~DilD 275 (364)
T TIGR01242 200 GARLVREVFELAKEKAPSIIFIDEID---AIAAKRVDSSTSGDREVQRTLMQLLAELDGF-DPRGNVKVIAATNRPDILD 275 (364)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECHH---HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCEEEEEECCCCHHCC
T ss_conf 16899999998530698168610133---3543211467787315788999999752488-8767616887207620204
Q ss_pred CC--CCCEEEEEEEEECCCC
Q ss_conf 79--8416646899965887
Q gi|254781225|r 618 NP--DDAWWRRYIVIPFDKP 635 (789)
Q Consensus 618 ~~--d~~~~rR~~iipF~~~ 635 (789)
.. =-|=+.|++=||.+..
T Consensus 276 PA~LRPGRFDR~IEVPlP~~ 295 (364)
T TIGR01242 276 PAILRPGRFDRIIEVPLPDF 295 (364)
T ss_pred CCCCCCCCCCCEEECCCCCC
T ss_conf 32148886132573169783
No 38
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.92 E-value=0.054 Score=30.94 Aligned_cols=28 Identities=36% Similarity=0.491 Sum_probs=23.2
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7433799997078862578999999972
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
...--|.|++|+.+.|||||+++|....
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4686089986788887899999998413
No 39
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=93.84 E-value=0.054 Score=30.97 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=7.5
Q ss_pred CEEEECCCEEECCCCCC
Q ss_conf 17660793797438885
Q gi|254781225|r 427 RFLGEQDGILDLETGQK 443 (789)
Q Consensus 427 ~ll~~~NGv~dl~t~~~ 443 (789)
..|.+++=++.++.|++
T Consensus 203 RIlDvADRI~~MEdG~L 219 (220)
T TIGR02982 203 RILDVADRIVQMEDGKL 219 (220)
T ss_pred CHHHHHHHHHHCCCCCC
T ss_conf 12006544421168635
No 40
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.83 E-value=0.02 Score=33.83 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=9.9
Q ss_pred HHHHHHCCEEEEECCC
Q ss_conf 9742007889992347
Q gi|254781225|r 46 IDKLPACGFGFVCGVG 61 (789)
Q Consensus 46 i~~~~~~giGi~~G~~ 61 (789)
+..+...||-+++|+.
T Consensus 19 ~~~~f~~gi~lI~G~n 34 (908)
T COG0419 19 IEKLFDSGIFLIVGPN 34 (908)
T ss_pred CCCCCCCCEEEEECCC
T ss_conf 2315788837998999
No 41
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.74 E-value=0.26 Score=26.39 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=37.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 9988879999999999999999759874337999970788625789999999723
Q gi|254781225|r 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
.|+++.|.++.+..|..++. .|... + ++++||.|.||+|...++.+-++
T Consensus 13 ~~~dvvGq~~i~~~L~~~~~---~~~~p-h--lLf~GPpG~GKTt~A~~lA~~l~ 61 (337)
T PRK12402 13 LFEDILGQESVVDHLSALAA---SGNLP-H--LVVYGPSGSGKTAAVRALARELY 61 (337)
T ss_pred CHHHHCCCHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 79980397999999999997---79987-6--98889298489999999999967
No 42
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.60 E-value=0.47 Score=24.75 Aligned_cols=155 Identities=15% Similarity=0.228 Sum_probs=93.2
Q ss_pred CCCHHHHCCEECCCCCCCC--CC---HHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCC---CCCEEEEEEECCCCCHH
Q ss_conf 8986550100137888875--79---4789999988-87999999999999999975987---43379999707886257
Q gi|254781225|r 445 KPTKELYITKSTGTPFVEG--EP---SQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKS 515 (789)
Q Consensus 445 ~~~~~~~~t~~~~~~y~~~--a~---~p~~~~~l~~-~~~d~e~~~~l~~~~g~~l~g~~---~~~~~~~~~G~G~nGKS 515 (789)
+.+-...++..++++-..- .+ --..++.|.+ ++|-++.++-+-+.+-.+-.|-. +.---|++.||.|-||+
T Consensus 530 ~~~ia~vvs~~tgIPv~~~~~~e~~~L~~Le~~L~~rViGQd~AI~~I~~aI~~sraGL~dp~rP~GsFlf~GptGvGKT 609 (852)
T TIGR03346 530 AEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKT 609 (852)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHH
T ss_conf 99999999999688667666547999987888899897170999999999999997188889997458998678877689
Q ss_pred HHHHHHHHH-HCCC-CCCCCCHHHHHHCCCCCCCCCCHHHHHHCCC----------------------EEEEEECCCCCC
Q ss_conf 899999997-2330-0034426764201245555689889973898----------------------099993467776
Q gi|254781225|r 516 TLMNLIKYA-FGNQ-YVINAEASDIMQNRPPEAGKANPSLIRLMGS----------------------RIVIISETNEND 571 (789)
Q Consensus 516 t~~~~l~~l-lG~~-~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~----------------------r~~~~~E~~~~~ 571 (789)
-+...|... ||+. +....+.+.+.. ...+++|.|+ -++..+|.++-.
T Consensus 610 ELAKaLAe~Lfg~~~~LIriDMSEy~E---------~hsvsrLiGaPPGYVGy~egG~Lte~vr~~PysVvL~DEIEKAh 680 (852)
T TIGR03346 610 ELAKALAEFLFDDEDAMVRIDMSEYME---------KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH 680 (852)
T ss_pred HHHHHHHHHHHCCCCCEEEECHHHHCC---------HHHHHHHCCCCCCCCCCCCCCEECHHHHHCCCEEEEECCHHHHC
T ss_conf 999999999855852069843044301---------22477855899976776878742398981988799853054307
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCC
Q ss_conf 01310024541598587321047860687145289997388
Q gi|254781225|r 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 (789)
Q Consensus 572 ~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~ 612 (789)
.---..|-|+-....++- -.++. +.|+.+ .++|.||-
T Consensus 681 ~~V~~~lLQilD~G~ltD--~~Gr~-vdF~Nt-iiimTSN~ 717 (852)
T TIGR03346 681 PDVFNVLLQVLDDGRLTD--GQGRT-VDFRNT-VIIMTSNL 717 (852)
T ss_pred HHHHHHHHHHHCCCEEEC--CCCCE-EEEEEE-EEEEECCC
T ss_conf 689999998823674307--99988-853556-89861540
No 43
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.57 E-value=0.057 Score=30.80 Aligned_cols=28 Identities=46% Similarity=0.576 Sum_probs=22.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4337999970788625789999999723
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
..--|+.+.|+.|+|||||+++|..+.-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 4998999989999989999999964667
No 44
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.48 E-value=0.39 Score=25.27 Aligned_cols=94 Identities=19% Similarity=0.279 Sum_probs=49.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC--CC
Q ss_conf 7888875794789999988879999999999999999759874337999970788625789999999723300034--42
Q gi|254781225|r 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN--AE 534 (789)
Q Consensus 457 ~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~--~~ 534 (789)
++..++.. .|+.|+.. ++...+.-+.+++. .....++++||+.|+|||-+++.+.+-+....... .+
T Consensus 5 ~~~l~~~~---tfdnFi~~--~N~~~~~~l~~~~~------~~~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~ 73 (226)
T TIGR03420 5 DVGLPDDP---TFDNFYAG--GNAELLAALRQLAA------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred CCCCCCCC---CHHCCCCC--CHHHHHHHHHHHHH------CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 99999987---63123658--67999999998764------668886999899999889999999999862699579952
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 6764201245555689889973898099993467
Q gi|254781225|r 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 (789)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~ 568 (789)
...+... ....+-.+...-++++.+.+
T Consensus 74 ~~~~~~~-------~~~~l~~l~~~d~l~iDDi~ 100 (226)
T TIGR03420 74 LAELAQA-------DPEVLEGLEQADLVCLDDVE 100 (226)
T ss_pred HHHHHHH-------HHHHHHHCCCCCEEEEECHH
T ss_conf 9998775-------39999727448999996633
No 45
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.36 E-value=0.51 Score=24.50 Aligned_cols=155 Identities=15% Similarity=0.214 Sum_probs=94.2
Q ss_pred CCCHHHHCCEECCCCCCCCC--CHH---HHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCCC---CCEEEEEEECCCCCHH
Q ss_conf 89865501001378888757--947---89999988-879999999999999999759874---3379999707886257
Q gi|254781225|r 445 KPTKELYITKSTGTPFVEGE--PSQ---EFLDLVSG-YFESEEVMDYFTRCVGMALLGGNK---AQRFIHIRGVGGSGKS 515 (789)
Q Consensus 445 ~~~~~~~~t~~~~~~y~~~a--~~p---~~~~~l~~-~~~d~e~~~~l~~~~g~~l~g~~~---~~~~~~~~G~G~nGKS 515 (789)
+.+-...++..++++-..-. +.. ..++-|.+ ++|-.+.++-+-..+--+-.|-.. .---|++.||.|-||+
T Consensus 533 ~~~ia~vvs~~TgIPv~~l~~~e~~~L~~le~~L~~rViGQd~AI~~v~~aI~~sraGL~dp~rPiGsFLFlGPTGVGKT 612 (857)
T PRK10865 533 DAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKT 612 (857)
T ss_pred HHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHH
T ss_conf 99999999999689830213105899999999998785280999999999999986389999997389998689878889
Q ss_pred HHHHHHHHH-HCCCC-CCCCCHHHHHHCCCCCCCCCCHHHHHHCCC----------------------EEEEEECCCCCC
Q ss_conf 899999997-23300-034426764201245555689889973898----------------------099993467776
Q gi|254781225|r 516 TLMNLIKYA-FGNQY-VINAEASDIMQNRPPEAGKANPSLIRLMGS----------------------RIVIISETNEND 571 (789)
Q Consensus 516 t~~~~l~~l-lG~~~-~~~~~~~~~~~~~~~~~~~~~~~la~l~g~----------------------r~~~~~E~~~~~ 571 (789)
-+...|... ||+.. ....+.+.+.. ...+++|.|+ -++..+|.++-.
T Consensus 613 ElAK~LA~~LF~~e~~liriDMSEy~E---------~hsVSrLiGaPPGYVGy~eGG~LTeaVRr~PySVvLfDEIEKAH 683 (857)
T PRK10865 613 ELCKALANFMFDSDDAMVRIDMSEFME---------KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH 683 (857)
T ss_pred HHHHHHHHHHHCCHHHEEEECCHHHCC---------CHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEHHHHHHC
T ss_conf 999999999838933425625332113---------01276755899876675778811099981987788632576638
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCC
Q ss_conf 01310024541598587321047860687145289997388
Q gi|254781225|r 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 (789)
Q Consensus 572 ~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~ 612 (789)
.---..|-|+.-...++= -.++. +.|+.+ .++|.||-
T Consensus 684 pdV~nilLQvlD~G~LtD--~~Gr~-vdF~Nt-IIImTSN~ 720 (857)
T PRK10865 684 PDVFNILLQVLDDGRLTD--GQGRT-VDFRNT-VVIMTSNL 720 (857)
T ss_pred HHHHHHHHHHHCCCEEEC--CCCCE-EEEEEE-EEEECCCH
T ss_conf 589999998703683207--99988-851334-89964623
No 46
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.27 E-value=0.52 Score=24.40 Aligned_cols=166 Identities=17% Similarity=0.156 Sum_probs=80.2
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 01378888757947899999888799999999999999997598743379999707886257899999997233000344
Q gi|254781225|r 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 (789)
Q Consensus 454 ~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~ 533 (789)
....+.|+.-|-|.+-.+-| .|+++||..-=-|.-.| .+-.+=++|+|+.+.||+.|...+..=-|--..+..
T Consensus 145 ~~~~vtF~DVaG~~eaK~el------~EiVdfLk~P~k~~~~G-ak~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~~~s 217 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEV------AELVEYLREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTIS 217 (644)
T ss_pred CCCCCCCCCCCCCHHHHHHH------HHHHHHHHCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEE
T ss_conf 78987710408978999999------99999812979999749-979985177798998778999998645598089978
Q ss_pred CHHHHHHCCCCCCCC--CCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECC-----CCCCEEEECCEEE
Q ss_conf 267642012455556--898899738980999934677760131002454159858732104-----7860687145289
Q gi|254781225|r 534 EASDIMQNRPPEAGK--ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY-----GNTYSESPASFTP 606 (789)
Q Consensus 534 ~~~~~~~~~~~~~~~--~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~-----~~~~~~~~p~~~~ 606 (789)
...+.+.--+..+.. .-|+.|+-.--.+++++|.+.-.+-.. ..+.||..-.-+-++ -+.|. - ....+
T Consensus 218 gsef~e~~vGvga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~---~~~~gg~~e~~~tlNqlL~EmDGf~-~-~~~Vi 292 (644)
T PRK10733 218 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG---AGLGGGHDEREQTLNQMLVEMDGFE-G-NEGII 292 (644)
T ss_pred HHHHHHEEEECCHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCC---CCCCCCCHHHHHHHHHHHHHHHCCC-C-CCCEE
T ss_conf 47730222530689999999999966997999953220366678---9888983288878999999954888-8-78769
Q ss_pred EEECCCCCCCCCCCCCEEE-----EEEEEECC
Q ss_conf 9973886342679841664-----68999658
Q gi|254781225|r 607 FIVPNKHLFVRNPDDAWWR-----RYIVIPFD 633 (789)
Q Consensus 607 ~~~~N~~P~~~~~d~~~~r-----R~~iipF~ 633 (789)
++++.+.|.+ -|.|+-| |.+.||.+
T Consensus 293 viaATNrpd~--LD~ALlRPGRFDr~I~V~lP 322 (644)
T PRK10733 293 VIAATNRPDV--LDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred EEEECCCCCC--CCHHHHCCCCCCEEEEECCC
T ss_conf 9962699755--47777168886559997798
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.13 E-value=0.48 Score=24.68 Aligned_cols=141 Identities=19% Similarity=0.254 Sum_probs=80.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCCHHHHHHCCCC
Q ss_conf 789999988879999999999999999759874-3379999707886257899999997233000-34426764201245
Q gi|254781225|r 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPP 544 (789)
Q Consensus 467 p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~-~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~~~~~~~~~~~ 544 (789)
..|.+|+ |-+++.+-+.-++..+-...-. .| ++++|+.|-||+|+..+|.+-+|.... ++.+. +..
T Consensus 22 ~~l~efi----GQ~~i~~~L~v~i~Aak~r~e~ldH--~Ll~GPPGlGKTTLA~iiA~E~~~~~~~tsGP~--lek---- 89 (328)
T PRK00080 22 KSLDEFI----GQEKVKENLKIFIEAAKKRGEALDH--VLLYGPPGLGKTTLANIIANEMGVNIRITSGPA--LEK---- 89 (328)
T ss_pred CCHHHCC----CHHHHHHHHHHHHHHHHHCCCCCCC--EEEECCCCCCHHHHHHHHHHHHCCCCEECCCCC--CCC----
T ss_conf 8576635----9599999999999999964999880--576588998899999999998688815624500--167----
Q ss_pred CCCCCCHHHHHHCCCEEEEEECCCCCCCCCCC---------EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCC
Q ss_conf 55568988997389809999346777601310---------024541598587321047860687145289997388634
Q gi|254781225|r 545 EAGKANPSLIRLMGSRIVIISETNENDEINAA---------KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 (789)
Q Consensus 545 ~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~---------~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~ 615 (789)
.+.--.-|..|...-+.+++|...=.+.-+. .+--++|.+ -.||-.. . -.|.|+|+-+|-..=.
T Consensus 90 -~~DL~~iLt~l~~~dvLFIDEIHRl~~~vEE~LY~AMEDf~iDi~iG~g-~~Ar~~~----i-~L~pFTLIGATTr~g~ 162 (328)
T PRK00080 90 -AGDLAALLTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKG-PAARSIR----L-DLPPFTLIGATTRAGL 162 (328)
T ss_pred -HHHHHHHHHHCCCCCEEEEHHHHHCCHHHHHHHHHHHHHCEEEEEECCC-CCCEEEE----C-CCCCEEEEECCCCCCC
T ss_conf -4789999960887876765065324888998857987752345786478-6532455----5-8998347401367665
Q ss_pred CCCCCCCEEEEEEE
Q ss_conf 26798416646899
Q gi|254781225|r 616 VRNPDDAWWRRYIV 629 (789)
Q Consensus 616 ~~~~d~~~~rR~~i 629 (789)
-+.-+..|+-+
T Consensus 163 ---Ls~PLrdRFGi 173 (328)
T PRK00080 163 ---LTSPLRDRFGI 173 (328)
T ss_pred ---CCHHHHHHCCC
T ss_conf ---77678975793
No 48
>KOG1970 consensus
Probab=92.97 E-value=0.28 Score=26.25 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=10.2
Q ss_pred EECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 01378888757947899999888
Q gi|254781225|r 454 KSTGTPFVEGEPSQEFLDLVSGY 476 (789)
Q Consensus 454 ~~~~~~y~~~a~~p~~~~~l~~~ 476 (789)
.+..+.|+|-|+. ...++|..|
T Consensus 258 ri~~IsFNPIa~T-~MKK~L~ri 279 (634)
T KOG1970 258 RISNISFNPIAPT-IMKKFLKRI 279 (634)
T ss_pred CCCEEEECCCCHH-HHHHHHHHH
T ss_conf 8524761577679-999999999
No 49
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=92.84 E-value=0.12 Score=28.61 Aligned_cols=26 Identities=38% Similarity=0.750 Sum_probs=22.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 99997078862578999999972330
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
+.-+.|+-|+||||++++|..++|..
T Consensus 24 itaIvGpsGsGKSTLl~~i~~~lg~~ 49 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGEQ 49 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 28999999998899999999874777
No 50
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=92.82 E-value=0.094 Score=29.38 Aligned_cols=120 Identities=17% Similarity=0.221 Sum_probs=55.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCC-CCCC----HHHHHHCC--CCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf 999707886257899999997233000-3442----67642012--4555568988997389809999346777601310
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYV-INAE----ASDIMQNR--PPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~----~~~~~~~~--~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~ 576 (789)
+++.|+-+.|||++...+...+|.... .+.+ .+.+.+.. ....+...+.-..+. ..+++++|.+.-..---+
T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~~~~i~~~~~~~~~Dl~G~~~~~~~~~~~~~~~G~l~-~~vl~lDEin~a~~~v~~ 80 (131)
T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLLPSDITGTEVYDQKTREFEFRPGPIF-ANVLLADEINRAPPKTQS 80 (131)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCC-CCCEEEEHHHCCCHHHHH
T ss_conf 8789899876999999999995998168883377670003684542378740898457310-370564012039989999
Q ss_pred EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCC---CCCCCCEEEEEEE
Q ss_conf 0245415985873210478606871452899973886342---6798416646899
Q gi|254781225|r 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV---RNPDDAWWRRYIV 629 (789)
Q Consensus 577 ~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~---~~~d~~~~rR~~i 629 (789)
.+-++.-.-.++. .+.. ....+.|.+|.+.|- ... ..-+.|+..|+++
T Consensus 81 ~Ll~~l~er~v~~---~g~~-~~~p~~f~viAt~NP-~e~~G~~~L~~al~dRF~~ 131 (131)
T pfam07726 81 ALLEAMQERQVTI---GGET-HPLPEPFFVLATQNP-IEQEGTYPLPEAQLDRFLM 131 (131)
T ss_pred HHHHHHHCEEEEE---CCEE-EECCCCEEEEECCCC-CCCCCCEECCHHHHCCCCC
T ss_conf 9997632649977---9988-527998499971698-7555764499889656158
No 51
>PRK07261 topology modulation protein; Provisional
Probab=92.78 E-value=0.11 Score=28.86 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=21.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 9997078862578999999972330
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
++++|++|+|||||..-|...+|--
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip 27 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCP 27 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9998899986899999999987979
No 52
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.72 E-value=0.082 Score=29.74 Aligned_cols=15 Identities=13% Similarity=0.425 Sum_probs=8.2
Q ss_pred EEE-ECCCCEEEECCC
Q ss_conf 348-526843880477
Q gi|254781225|r 126 LDI-LGCGQYFVAYNI 140 (789)
Q Consensus 126 iEi-~~~G~q~V~~gs 140 (789)
+++ ..+|.++|.-|.
T Consensus 22 i~l~i~~Gef~vllGP 37 (338)
T COG3839 22 VNLDIEDGEFVVLLGP 37 (338)
T ss_pred CEEEECCCCEEEEECC
T ss_conf 2689747979999899
No 53
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.70 E-value=0.18 Score=27.53 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=26.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 3799997078862578999999972330003
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~ 531 (789)
..+..++|+-++|||++++.|+-+||..+..
T Consensus 22 ~~~~~ivG~nGsGKSni~~ai~~~~g~~~~~ 52 (178)
T cd03239 22 NSFNAIVGPNGSGKSNIVDAICFVLGGKAAK 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCHHH
T ss_conf 9817998999887789999999998664276
No 54
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.67 E-value=0.63 Score=23.86 Aligned_cols=151 Identities=16% Similarity=0.206 Sum_probs=90.2
Q ss_pred HHHCCEECCCCCCCC-----CCHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCCCC---CEEEEEEECCCCCHHHHHH
Q ss_conf 550100137888875-----794789999988-8799999999999999997598743---3799997078862578999
Q gi|254781225|r 449 ELYITKSTGTPFVEG-----EPSQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKA---QRFIHIRGVGGSGKSTLMN 519 (789)
Q Consensus 449 ~~~~t~~~~~~y~~~-----a~~p~~~~~l~~-~~~d~e~~~~l~~~~g~~l~g~~~~---~~~~~~~G~G~nGKSt~~~ 519 (789)
...++..++++-..- ..--..++.|.+ ++|-++.++-+-+.+--+-.|-... ---|++.||.|-||+-+..
T Consensus 535 a~vvs~~tgIPv~~l~~~e~~~l~~le~~L~~~ViGQ~~Av~~v~~ai~~sraGl~d~~rPigsFLFlGPTGVGKTElAK 614 (852)
T TIGR03345 535 AEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETAL 614 (852)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 99999996898788617888888867999999972849999999999999871799999985689987899877899999
Q ss_pred HHHHHH-CCC-CCCCCCHHHHHHCCCCCCCCCCHHHHHHCCC----------------------EEEEEECCCCCCCCCC
Q ss_conf 999972-330-0034426764201245555689889973898----------------------0999934677760131
Q gi|254781225|r 520 LIKYAF-GNQ-YVINAEASDIMQNRPPEAGKANPSLIRLMGS----------------------RIVIISETNENDEINA 575 (789)
Q Consensus 520 ~l~~ll-G~~-~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~----------------------r~~~~~E~~~~~~~~~ 575 (789)
.|...| |+. +..-.+.+.+.. ...+++|.|+ -++..+|.++-..---
T Consensus 615 ~LA~~LFg~e~~liR~DMSEy~E---------~hsvsrLiGaPPGYVGy~eGG~LTe~Vrr~PysVvLfDEIEKAHpdV~ 685 (852)
T TIGR03345 615 ALAELLYGGEQNLITINMSEFQE---------AHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVL 685 (852)
T ss_pred HHHHHHCCCCCCEEEECCHHHCC---------HHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECHHHHCCHHHH
T ss_conf 99999719861147842243210---------436878638999766748777210988809986888611300288999
Q ss_pred CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCC
Q ss_conf 0024541598587321047860687145289997388
Q gi|254781225|r 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 (789)
Q Consensus 576 ~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~ 612 (789)
..|-|+.-...++=. .++. +.|+.+ .++|.||-
T Consensus 686 nilLQvlD~G~LtD~--~Gr~-vdF~Nt-IIImTSN~ 718 (852)
T TIGR03345 686 ELFYQVFDKGVMEDG--EGRE-IDFKNT-VILLTSNA 718 (852)
T ss_pred HHHHHHHCCCEEECC--CCCE-EECEEE-EEEECCCH
T ss_conf 999987246777579--9998-845212-99975724
No 55
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=92.63 E-value=0.18 Score=27.42 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=32.1
Q ss_pred CCHHHHHHHH--HHHHHH-----------H--CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 9999999999--999999-----------7--598743379999707886257899999997233
Q gi|254781225|r 478 ESEEVMDYFT--RCVGMA-----------L--LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 478 ~d~e~~~~l~--~~~g~~-----------l--~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+|+|.+.|++ +|+||. | .+....--.++++|+.+||||++++-.....+.
T Consensus 23 s~~eRI~~i~~~rWIgY~~A~~~L~~Le~Ll~~P~~~Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~ 87 (302)
T pfam05621 23 PADERIQRIRADRWIGYPRAVEALNRLEALYAWPNKQRMPNLLLVGPTNNGKSMIVEKFRRAHPA 87 (302)
T ss_pred CHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 98999999757853277899999999999984686468875588707988789999999996799
No 56
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=92.58 E-value=0.23 Score=26.83 Aligned_cols=158 Identities=13% Similarity=0.218 Sum_probs=80.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCC--------CC-EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC-------C
Q ss_conf 99988879999999999999999759874--------33-79999707886257899999997233000344-------2
Q gi|254781225|r 471 DLVSGYFESEEVMDYFTRCVGMALLGGNK--------AQ-RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA-------E 534 (789)
Q Consensus 471 ~~l~~~~~d~e~~~~l~~~~g~~l~g~~~--------~~-~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~-------~ 534 (789)
+-|+..+|=.++.+.++++-++..+..-+ .+ ..+|+.|..|+||+|...+|..+|-+=++-+- .
T Consensus 3 ~EL~~~vGL~~vK~~i~EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNPGTGKTTVAR~~gklf~emnvL~KGH~iE~ER 82 (261)
T TIGR02881 3 RELSRLVGLDEVKELIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARLLGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 23564048889999999999999998888751011488447877427866843899999999985337567886788762
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEEC--CC
Q ss_conf 6764201245555689889973898099993467776013100245415985873210478606871452899973--88
Q gi|254781225|r 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP--NK 612 (789)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~--N~ 612 (789)
.-++..--|-++-..+..+-+..|- +.+++|.=.=.+-.+-=| |-+-|..=-|. .-+-...|.+|+++ .+
T Consensus 83 ADLVGEYIGHTAqkTRe~~kkA~GG-vLFiDEAYSLaRGGEKDF----GKEAIDtLVK~---mEd~~~~lvlILAGY~~E 154 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKALGG-VLFIDEAYSLARGGEKDF----GKEAIDTLVKA---MEDQRNELVLILAGYSDE 154 (261)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHCCCCCCC----CCHHHHHHHHH---HHHCCCCEEEEEECCHHH
T ss_conf 2212232030048999999986388-005577777614888876----62088899998---761569868997087689
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 634267984166468999658878887
Q gi|254781225|r 613 HLFVRNPDDAWWRRYIVIPFDKPIANR 639 (789)
Q Consensus 613 ~P~~~~~d~~~~rR~~iipF~~~~~~~ 639 (789)
|-.|=..-.|+-.|+ |+.-.|||=
T Consensus 155 M~yFL~~NPGL~SRF---Pi~i~FPdY 178 (261)
T TIGR02881 155 MDYFLSLNPGLRSRF---PISIDFPDY 178 (261)
T ss_pred HHHHHHCCCCCCCCC---CCEEECCCC
T ss_conf 999862077977766---505418899
No 57
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=92.58 E-value=0.082 Score=29.75 Aligned_cols=22 Identities=45% Similarity=0.653 Sum_probs=15.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9999707886257899999997
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~l 524 (789)
.+.++|..|+|||||+.+|..|
T Consensus 33 ~~~IvG~SGSGKSTLLHlLGGL 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 3798736787168999987306
No 58
>PRK07429 phosphoribulokinase; Provisional
Probab=92.54 E-value=0.17 Score=27.58 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHH---HCCCCCCCEEEEEEECC-CCCHHHHHHHHH
Q ss_conf 9999999999999---75987433799997078-862578999999
Q gi|254781225|r 481 EVMDYFTRCVGMA---LLGGNKAQRFIHIRGVG-GSGKSTLMNLIK 522 (789)
Q Consensus 481 e~~~~l~~~~g~~---l~g~~~~~~~~~~~G~G-~nGKSt~~~~l~ 522 (789)
|-+.|+...+.-. .+|...++..-.---+| +||-+.|.-++.
T Consensus 265 ~~~~~~E~~l~~~~~k~~g~~t~~~~~~~~~~gs~ngt~l~Q~l~~ 310 (331)
T PRK07429 265 EEVIYLEDHLSNTSTKYYGETTELLLSHPDYPGSNNGTGLFQLLIG 310 (331)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999997535772146568998738678887540699999999
No 59
>PRK08118 topology modulation protein; Reviewed
Probab=92.53 E-value=0.13 Score=28.51 Aligned_cols=98 Identities=22% Similarity=0.156 Sum_probs=50.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 99970788625789999999723300034426764201245555689889973898099993467776013100245415
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltg 583 (789)
++++|+.|+|||||..-|...+|--. ..++......+-. +.+. +. -...++.++.
T Consensus 4 I~IiG~~GsGKSTlAr~L~~~~~ip~-~~LD~l~w~~~w~----------------------~~~~-~e-~~~~~~~~~~ 58 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPV-HHLDALFWKPNWE----------------------GVPK-EE-QRTVQNELVK 58 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE-EECCCEEECCCCC----------------------CCCH-HH-HHHHHHHHHH
T ss_conf 99988999879999999999889697-9644347668994----------------------6888-99-9999999983
Q ss_pred CCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE
Q ss_conf 98587321047860687145289997388634267984166468
Q gi|254781225|r 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 (789)
Q Consensus 584 gD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~ 627 (789)
+|.=-.++.|........+.+..++.-+ +|...-.-..+.|++
T Consensus 59 ~~~WIidGny~~~~~~r~~~aD~iI~Ld-~p~~~~~~r~~kR~~ 101 (167)
T PRK08118 59 EDEWIIDGNYGGTMDIRLNAADTIIFLD-IPRTICLYRAFKRRV 101 (167)
T ss_pred CCCEEEECCCHHHHHHHHHHCCEEEEEC-CCHHHHHHHHHHHHH
T ss_conf 8987994771779987797699999985-989999999999999
No 60
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.44 E-value=0.1 Score=29.18 Aligned_cols=29 Identities=38% Similarity=0.487 Sum_probs=23.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..--|+.+.|+.|+||||++++|..+.-.
T Consensus 25 ~~Ge~v~i~GpSGsGKSTLl~~i~gl~~p 53 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 59989999979995399999999629898
No 61
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=92.30 E-value=0.26 Score=26.44 Aligned_cols=41 Identities=24% Similarity=0.465 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 9999999999999997598743379999707886257899999997233
Q gi|254781225|r 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 479 d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
++++..|++.++ +.+..+++.|+.++||||+++.+...+..
T Consensus 125 ~~~~~~~L~~~v--------~~~~~ilIsG~TGSGKTT~l~all~~i~~ 165 (283)
T pfam00437 125 DADIAEFLRQAV--------QARGNILVSGGTGSGKTTLLYALLNEINT 165 (283)
T ss_pred HHHHHHHHHHHH--------HCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 599999999999--------81975999889999889999999984087
No 62
>PRK05480 uridine kinase; Provisional
Probab=92.30 E-value=0.19 Score=27.31 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=27.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 433799997078862578999999972330003442
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~ 534 (789)
+....+-+.|+.++|||||.+.|...||...++.++
T Consensus 4 k~P~iIgIaG~SgSGKTT~a~~L~~~l~~~~v~vi~ 39 (209)
T PRK05480 4 KQPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIS 39 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 898899998999778999999999980868759995
No 63
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=92.28 E-value=0.21 Score=27.03 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=8.4
Q ss_pred ECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1378888757947899999888
Q gi|254781225|r 455 STGTPFVEGEPSQEFLDLVSGY 476 (789)
Q Consensus 455 ~~~~~y~~~a~~p~~~~~l~~~ 476 (789)
+..+.|+|=|+ -...+||+.|
T Consensus 291 ~~~i~FNPiap-T~mkK~L~~I 311 (670)
T TIGR00602 291 VSNIKFNPIAP-TLMKKFLNRI 311 (670)
T ss_pred CCCEECCCCCH-HHHHHHHHHH
T ss_conf 13100178717-8999985556
No 64
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.14 E-value=0.29 Score=26.09 Aligned_cols=48 Identities=33% Similarity=0.325 Sum_probs=33.0
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 99988879999999999999999759874337999970788625789999999723
Q gi|254781225|r 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 471 ~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
+++..=+-++++.+||+.++ +..+-+++.|+.++||||+++.|...+.
T Consensus 3 dlv~~G~~~~~~~~~L~~~v--------~~~~nIlIsG~tGSGKTTll~al~~~i~ 50 (186)
T cd01130 3 DLIAQGTFSPLQAAYLWLAV--------EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHCCCCCHHHHHHHHHHH--------HCCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 78866999999999999999--------8599899989999989999999996133
No 65
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.07 E-value=0.12 Score=28.74 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=23.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++.+.|+.|+|||||+++|..+.-.
T Consensus 22 ~~Ge~~~i~GpSGsGKSTLL~~i~gl~~p 50 (206)
T TIGR03608 22 EKGKMVAIVGESGSGKSTLLNIIGLLEKP 50 (206)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 69989999879997099999999759998
No 66
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.93 E-value=0.41 Score=25.13 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=32.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 999888799999999999999997598743379999707886257899999997233
Q gi|254781225|r 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 471 ~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..+...+...++.+||+.++- ..+=+++.|..++||+||+|.|...+..
T Consensus 140 ~~l~~~~~~~~~~~fL~~aV~--------~r~NIlIsGgTGSGKTTllnALl~~IP~ 188 (343)
T PRK13851 140 EAILRHYDNGDLEAFLHACVV--------GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (343)
T ss_pred HHHHHCCCCHHHHHHHHHHHH--------CCCCEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 787750243779999999997--------6988999888986199999999962896
No 67
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=91.85 E-value=0.15 Score=28.00 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=20.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 7999970788625789999999723
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
=|+-++|+.|.|||||+..|-.|..
T Consensus 29 E~~~~IG~SGAGKSTLLR~iNrL~~ 53 (253)
T TIGR02315 29 EFVAVIGPSGAGKSTLLRCINRLVE 53 (253)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 1799973788726799987753026
No 68
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=91.84 E-value=0.14 Score=28.30 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=32.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf 3799997078862578999999972330003442676420124555568988997389809999346777601310
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~ 576 (789)
++.+++.|+.++|||-+.--|...++.. +.+.+..++-. +...|.+.|....+.+.+--.++-.+.+...+.+
T Consensus 4 ~~ii~i~GpTasGKs~la~~la~~~~~e-IIsaDS~QvYk--~l~IgTakps~~e~~~i~Hhli~~~~~~e~~sv~ 76 (304)
T PRK00091 4 PKLIVLVGPTASGKTALAIELAKRLNGE-IISVDSMQVYR--GMDIGTAKPTAEELAGVPHHLIDILDPTESYSAA 76 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCE-EEEECHHHHHC--CCCEEECCCCHHHHCCCCCEEEEEECCCCCEEHH
T ss_conf 9779998988658999999999987998-99412688749--9986889999999818981243456588754499
No 69
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=91.74 E-value=0.18 Score=27.52 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4337999970788625789999999723
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
..-.++.+.|+.|+||||++++|..++-
T Consensus 24 ~~Ge~~~iiG~SGsGKSTll~~i~gL~~ 51 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLND 51 (227)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7998999999999819999999974450
No 70
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.72 E-value=0.61 Score=23.95 Aligned_cols=138 Identities=12% Similarity=0.153 Sum_probs=78.9
Q ss_pred EEECCCEEECC---CCCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCC-CCCCCEE
Q ss_conf 66079379743---88855898655010013788887579478999998887-9999999999999999759-8743379
Q gi|254781225|r 429 LGEQDGILDLE---TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLG-GNKAQRF 503 (789)
Q Consensus 429 l~~~NGv~dl~---t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~-~d~e~~~~l~~~~g~~l~g-~~~~~~~ 503 (789)
|-+.+|.+|++ |.+.+.++.+..+...+..-|-|.. ....-|.++- .|.+...-+..+.-++-.- ....++=
T Consensus 83 L~~~~~~idv~Y~pc~~~~~~~~~~~~~~~i~s~~mpk~---i~~as~~d~~~~d~~R~~a~~~a~~F~~~y~~~~~~kG 159 (306)
T PRK08939 83 LVMNGGYIDVSYLPTPEKIEADEERAIEERIQSIYMPKD---LLQATLADIDLDDLDRLDALMAALDFLEAYKPGEKVKG 159 (306)
T ss_pred EEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHH---HHCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 786388778987048999999999999998776357799---98098986488977899999999999997376988877
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC--CCCCC-HHHHHHCC-CCCCCCCCHHHHHHCCCEEEEEECCCC
Q ss_conf 99970788625789999999723300--03442-67642012-455556898899738980999934677
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQY--VINAE-ASDIMQNR-PPEAGKANPSLIRLMGSRIVIISETNE 569 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~--~~~~~-~~~~~~~~-~~~~~~~~~~la~l~g~r~~~~~E~~~ 569 (789)
+.++|+-|.|||-++..|.+-|-... +..+. ..++..-+ .-..+.-...+-.++.+.+.+++|...
T Consensus 160 lyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK~s~~d~s~~~~i~~~k~~~vLiLDDiGa 229 (306)
T PRK08939 160 LYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFIRELKNAISDGSVKEKIDAVKEAPVLMLDDIGA 229 (306)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCC
T ss_conf 8898999998999999999999986992999875999999999864898899999984499899844465
No 71
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=91.69 E-value=0.76 Score=23.34 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=36.5
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 999999999759874337999970788625789999999723300034426
Q gi|254781225|r 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 (789)
Q Consensus 485 ~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~ 535 (789)
+.+++.-..-....+....+++-|+.|-||||+...|..=||=..+.+.+.
T Consensus 76 ~a~rY~~~r~~r~~~~pliILigGtsGvGKSTlA~~LA~rLgI~~visTD~ 126 (306)
T PRK04220 76 IAEKYLLWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDS 126 (306)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHH
T ss_conf 999999999985369987999858998878999999999709883422216
No 72
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=91.68 E-value=0.68 Score=23.63 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=65.2
Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCCH-------------HHHH
Q ss_conf 888799999999999999997598743379999707886257899999997233000-34426-------------7642
Q gi|254781225|r 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEA-------------SDIM 539 (789)
Q Consensus 474 ~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~~-------------~~~~ 539 (789)
.+|.|-+..++ .+-.+..|.. -++++|+-+.|||++.+.+..+|.+-.. ..... .++.
T Consensus 3 ~di~GQ~~akr----Al~iAaaG~H----~lLl~GpPG~GKTmlA~rl~~iLP~l~~~e~le~~~i~S~~g~~~~~~l~~ 74 (207)
T pfam01078 3 ADVKGQEQAKR----ALEIAAAGGH----NLLMIGPPGSGKTMLAKRLPGILPPLTEQEALEVTAIHSVAGLGGDGGLIR 74 (207)
T ss_pred HHHCCCHHHHH----HHHHHHCCCC----CEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 68638599999----9999854787----589788998029999976301489987899887776423036877777445
Q ss_pred HCCCC-------------CCCCCCHHHHHHCCCEEEEEECCCCCCCCC-CCEEEEEECCCEEEEEECCCCCCEEEECCEE
Q ss_conf 01245-------------555689889973898099993467776013-1002454159858732104786068714528
Q gi|254781225|r 540 QNRPP-------------EAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 (789)
Q Consensus 540 ~~~~~-------------~~~~~~~~la~l~g~r~~~~~E~~~~~~~~-~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~ 605 (789)
..-+. ....+.|....|.+.-+.+.+|..+-.+-- +++..-|-.| .|+..+-. . .++|.-.|.
T Consensus 75 ~rPfr~PHhs~s~~aliGGg~~~~PGeIslAH~GVLFLDE~~Ef~~~vle~LrqpLE~~-~v~IsRa~-~-~~~~PA~f~ 151 (207)
T pfam01078 75 RRPFRAPHHSASAAALVGGGSIPRPGEISLAHNGVLFLDELPEFSRRVLESLRQPLEDG-EITISRAR-A-KVTFPARFQ 151 (207)
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCEEEECCHHHCCHHHHHHHHHHHCCC-CEEEEECC-C-EEEECCCEE
T ss_conf 79865788764363322688889997066636878884764653988999998766049-48999567-5-898604348
Q ss_pred EEEECCCCCC
Q ss_conf 9997388634
Q gi|254781225|r 606 PFIVPNKHLF 615 (789)
Q Consensus 606 ~~~~~N~~P~ 615 (789)
++.++|-=|-
T Consensus 152 LvaA~NPCpC 161 (207)
T pfam01078 152 LVAAMNPCPC 161 (207)
T ss_pred EEEECCCCCC
T ss_conf 8885057777
No 73
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=91.57 E-value=0.21 Score=27.03 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=15.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 3379999707886257899999997
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
....--++||.|.|||||++.|-.|
T Consensus 26 ~n~vTAlIGPSGCGKSTlLR~lNRM 50 (248)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRM 50 (248)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7705898778898678999998877
No 74
>KOG0651 consensus
Probab=91.54 E-value=0.3 Score=25.97 Aligned_cols=131 Identities=15% Similarity=0.182 Sum_probs=75.5
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC---CCHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 8743379999707886257899999997233000344267642012455556---8988997389809999346777601
Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK---ANPSLIRLMGSRIVIISETNENDEI 573 (789)
Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~---~~~~la~l~g~r~~~~~E~~~~~~~ 573 (789)
+.+..+-+.+||+.+.||+-+.+++.+-+|-.....++..+.++.-+ +++. -.+--|+-.-...++++|.+.+..-
T Consensus 162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG-EsaRlIRemf~yA~~~~pciifmdeiDAigGR 240 (388)
T KOG0651 162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG-ESARLIRDMFRYAREVIPCIIFMDEIDAIGGR 240 (388)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCC-CHHHHHHHHHHHHHHHCCEEEEEHHHHHHCCE
T ss_conf 77788256876799986459999999865985477447666330026-57889999997786527557751012311457
Q ss_pred CCCEEEEEECCCEEEEEECC-----CCCCEEEECCEEEEEECCCCCCCCCC--CCCEEEEEEEEEC
Q ss_conf 31002454159858732104-----78606871452899973886342679--8416646899965
Q gi|254781225|r 574 NAAKIKQMTGGDCMTARLNY-----GNTYSESPASFTPFIVPNKHLFVRNP--DDAWWRRYIVIPF 632 (789)
Q Consensus 574 ~~~~~K~ltggD~i~ar~~~-----~~~~~~~~p~~~~~~~~N~~P~~~~~--d~~~~rR~~iipF 632 (789)
++-+.|..|.+..|-+- -+.| ......+++|++|..-..... -.|=..|.+-||-
T Consensus 241 ---r~se~Ts~dreiqrTLMeLlnqmdgf-d~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPl 302 (388)
T KOG0651 241 ---RFSEGTSSDREIQRTLMELLNQMDGF-DTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPL 302 (388)
T ss_pred ---EECCCCCHHHHHHHHHHHHHHHHCCC-HHCCCCCEEEECCCCCCCCHHHCCCCCCCCEECCCC
T ss_conf ---73355520599999999998742140-120663179853886656655428752111002688
No 75
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=91.50 E-value=0.17 Score=27.63 Aligned_cols=10 Identities=30% Similarity=0.580 Sum_probs=4.7
Q ss_pred CCCEEEECCC
Q ss_conf 6843880477
Q gi|254781225|r 131 CGQYFVAYNI 140 (789)
Q Consensus 131 ~G~q~V~~gs 140 (789)
.|-.||.+|-
T Consensus 18 ~GEi~vi~Gl 27 (372)
T TIGR01186 18 KGEIFVIMGL 27 (372)
T ss_pred CCEEEEEECC
T ss_conf 5438999778
No 76
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=91.41 E-value=0.19 Score=27.38 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=24.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 37999970788625789999999723300
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
-+.+.|+|..++||||+.+.+...|=+.+
T Consensus 19 g~vlWlTGLSGsGKsTiA~Al~~~L~~~G 47 (187)
T TIGR00455 19 GVVLWLTGLSGSGKSTIANALEKKLEKKG 47 (187)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 38985116885635799999999999669
No 77
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.36 E-value=0.15 Score=27.97 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=22.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++.+.|+-|+||||++++|..++-.
T Consensus 25 ~~Ge~~~iiGpsGsGKSTLl~~i~gl~~p 53 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 99989999999983399999999749999
No 78
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=91.34 E-value=0.39 Score=25.26 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=6.2
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 78999876418997
Q gi|254781225|r 79 NTFKDTFEILHGTP 92 (789)
Q Consensus 79 ~~~~~~~~~l~g~p 92 (789)
..+.+.+......|
T Consensus 22 s~I~e~L~~~~~~~ 35 (375)
T pfam05049 22 SIIKKAIQEISSAP 35 (375)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999997544382
No 79
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.32 E-value=0.17 Score=27.63 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=25.6
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 987433799997078862578999999972330
Q gi|254781225|r 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 496 g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
|....-.++-+.|+-|.|||||+++|..++-..
T Consensus 20 Gti~~GEiv~liGpNGaGKSTLlk~l~Gll~p~ 52 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPD 52 (246)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 846579899999799976999999997787888
No 80
>PRK10744 phosphate transporter subunit; Provisional
Probab=91.26 E-value=0.5 Score=24.57 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
....++-+.|+-|.||||++++|..+++-
T Consensus 34 ~~Ge~~~liG~nGaGKSTLlk~i~gl~~l 62 (257)
T PRK10744 34 AKNQVTAFIGPSGCGKSTLLRTFNKMYEL 62 (257)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 89989999999998199999999876512
No 81
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=91.26 E-value=0.16 Score=27.82 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=21.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 43379999707886257899999997
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
..-.++-|.||.|+||||++.+|..|
T Consensus 24 ~~G~lvaLLGPSGSGKsTLLR~iAGL 49 (241)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRVIAGL 49 (241)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 38527985468987378999998357
No 82
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.26 E-value=0.15 Score=27.94 Aligned_cols=28 Identities=43% Similarity=0.421 Sum_probs=22.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.-.++.+.|+.+.||||++++|..++-.
T Consensus 23 ~Ge~~~ilGpSGsGKSTLl~li~Gl~~p 50 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFETP 50 (211)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989999999995599999999769998
No 83
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=91.20 E-value=0.33 Score=25.74 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=54.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCC--CCCCEEEEE
Q ss_conf 999707886257899999997233000344267642012455556898899738980999934677760--131002454
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE--INAAKIKQM 581 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~--~~~~~~K~l 581 (789)
+.++|+.+.|||++.+.|...+.+.-.......... +.+.. .---.-.|-..+++.|...... ..+..+-+|
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~--~~~~~----~~wdgY~gq~vvi~DD~~~~~~~~~~~~~~~~l 74 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYS--RNPDD----DFWDGYTGQPVVIIDDFGQNPDGPSDEAELIRL 74 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE--CCCCC----CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 989799989889999999999999837787897796--78877----656788998579996577788862889999987
Q ss_pred ECCCEEEEEEC--CCCCCEEEECCEEEEEECCC
Q ss_conf 15985873210--47860687145289997388
Q gi|254781225|r 582 TGGDCMTARLN--YGNTYSESPASFTPFIVPNK 612 (789)
Q Consensus 582 tggD~i~ar~~--~~~~~~~~~p~~~~~~~~N~ 612 (789)
....+...... -.+. ..|.+.+. ++.||.
T Consensus 75 vs~~p~~~~ma~le~Kg-~~f~s~~v-i~tsN~ 105 (105)
T pfam00910 75 VSSTPYPPPMAALEEKG-TPFTSKFV-IVTSNF 105 (105)
T ss_pred HCCCCCCCCCCCHHHCC-CCCCCCEE-EEECCC
T ss_conf 56998388866761488-84468889-994799
No 84
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.18 E-value=0.17 Score=27.67 Aligned_cols=28 Identities=39% Similarity=0.453 Sum_probs=22.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4337999970788625789999999723
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
..--++.+.|+.++||||++++|..+.-
T Consensus 24 ~~Ge~~~ivGpSGsGKSTLL~~i~gL~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8998999999998449999999981999
No 85
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=91.15 E-value=0.31 Score=25.88 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=28.3
Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 598743379999707886257899999997233
Q gi|254781225|r 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 495 ~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+-.+..+..+++-|..|.||||+.+.|..-||-
T Consensus 2 ~~~~~~~~iiVVMGVsGsGKSTig~~LA~~l~~ 34 (177)
T PRK11545 2 STTNHDHHIYVLMGVSGSGKSAVASAVAHQLHA 34 (177)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 656788759999847989999999999998199
No 86
>PRK10646 putative ATPase; Provisional
Probab=91.15 E-value=0.76 Score=23.34 Aligned_cols=59 Identities=22% Similarity=0.221 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 999999999999999975987433799997078862578999999972330003442676420
Q gi|254781225|r 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 (789)
Q Consensus 478 ~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~ 540 (789)
+|++--.-+-+.+|.+|.+. ..+.|.|.=+.||+||..-+...+|......+|+..+.+
T Consensus 9 ~de~~T~~lg~~la~~l~~g----~vi~L~G~LGaGKTtf~r~i~~~lg~~~~V~SPTf~lv~ 67 (153)
T PRK10646 9 PDEQATLDLGERVAKACDGA----TVIYLYGDLGAGKTTFSRGFLQALGHQGNVKSPTYTLVE 67 (153)
T ss_pred CCHHHHHHHHHHHHHHCCCC----CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf 89999999999999768999----799998888789999999999984997862699764799
No 87
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=91.12 E-value=0.16 Score=27.87 Aligned_cols=47 Identities=30% Similarity=0.347 Sum_probs=32.2
Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCHHHHHH
Q ss_conf 759874337999970788625789999999723300-03442676420
Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQ 540 (789)
Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~~~~~~ 540 (789)
|+=+.+.--++=.+|+.|+||||+.+|++.+.=... -.-++..++..
T Consensus 484 l~L~I~~Ge~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLVDG~DLA~ 531 (703)
T TIGR01846 484 LSLDIKPGEVIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLVDGVDLAI 531 (703)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 687657865799872789867899999886148888747770300010
No 88
>pfam00493 MCM MCM2/3/5 family.
Probab=91.10 E-value=0.94 Score=22.71 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=72.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC----------CCCEEEEEEECCCCCHHHHHHHHHHHHCCC-CCC-C-CC
Q ss_conf 8999998887999999999999999975987----------433799997078862578999999972330-003-4-42
Q gi|254781225|r 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGN----------KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ-YVI-N-AE 534 (789)
Q Consensus 468 ~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~----------~~~~~~~~~G~G~nGKSt~~~~l~~llG~~-~~~-~-~~ 534 (789)
.++.+++.+.|.--=.+.+...+-..|.|++ +-..-+.+.|..+.|||+|+..+..+...- +++ . ++
T Consensus 14 ~~~~l~~siaP~i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~tsg~~ss 93 (327)
T pfam00493 14 IYDKLARSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSS 93 (327)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 99999998597124987999999999808987658888620365118984699815609999999868870883177665
Q ss_pred HHHHHH--CCCCCCCCCCHH--HHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEEC
Q ss_conf 676420--124555568988--9973898099993467776013100245415985873210478606871452899973
Q gi|254781225|r 535 ASDIMQ--NRPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610 (789)
Q Consensus 535 ~~~~~~--~~~~~~~~~~~~--la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~ 610 (789)
..-++. .+....|.-..+ ..-|...-++.++|.++-..-+-+.|-+..-.-.|+..+- +-. .+.+-.+.++-++
T Consensus 94 ~~GLTa~~~~d~~~~~~~leaGalvlAd~Gv~cIDEfdk~~~~d~saL~EAMEqqtVsIaKa-Gi~-~tL~ar~sVlAaa 171 (327)
T pfam00493 94 AAGLTAAVVRDPDTGEWTLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKA-GIV-ATLNARCSVLAAA 171 (327)
T ss_pred CCCCEEEEEEECCCCCEEEECCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCEEEEECC-CEE-EEECCCCEEEEEE
T ss_conf 67761589980688836983684775589827850055588767999999998681776338-538-9725871799852
Q ss_pred CCCCCCC----------CCCCCEEEEEEEE
Q ss_conf 8863426----------7984166468999
Q gi|254781225|r 611 NKHLFVR----------NPDDAWWRRYIVI 630 (789)
Q Consensus 611 N~~P~~~----------~~d~~~~rR~~ii 630 (789)
|-.-..- +-..++..|+-+|
T Consensus 172 NP~~g~yd~~~~~~~ni~Lp~~lLsRFDLi 201 (327)
T pfam00493 172 NPIFGRYDPKKSVAENINLPPPLLSRFDLI 201 (327)
T ss_pred CCCCCCCCCCCCHHHHCCCCHHHHCCEEEE
T ss_conf 776773788889888558976774501079
No 89
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=91.04 E-value=0.17 Score=27.60 Aligned_cols=23 Identities=48% Similarity=0.589 Sum_probs=17.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 99707886257899999997233
Q gi|254781225|r 505 HIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 505 ~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
-+.|+.|.||||++|+|..-+-.
T Consensus 28 Ai~GpSGAGKSTLLnLiAGF~~P 50 (213)
T TIGR01277 28 AILGPSGAGKSTLLNLIAGFLEP 50 (213)
T ss_pred EEECCCCCCHHHHHHHHHHHCCC
T ss_conf 88758986278898778640477
No 90
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.97 E-value=0.97 Score=22.63 Aligned_cols=127 Identities=18% Similarity=0.225 Sum_probs=69.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCHHHHHHCCCCCCCCCC
Q ss_conf 9988879999999999999999759874337999970788625789999999723300-034426764201245555689
Q gi|254781225|r 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQNRPPEAGKAN 550 (789)
Q Consensus 472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~~~~~~~~~~~~~~~~ 550 (789)
.|.+..|-+.+.+-++-++-.+-..+.... .+.++|+.+-||+|+.++|.+=+|-.- +++.+...-. |.--
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lD-HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~-------gDla 95 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALD-HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP-------GDLA 95 (332)
T ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCH-------HHHH
T ss_conf 488851839999999999999984498767-47864799876888999999985677376366201572-------6599
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCE---------EEEEECCCEEEEEECCCCCCEEEECCEEEEEECCC
Q ss_conf 889973898099993467776013100---------24541598587321047860687145289997388
Q gi|254781225|r 551 PSLIRLMGSRIVIISETNENDEINAAK---------IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 (789)
Q Consensus 551 ~~la~l~g~r~~~~~E~~~~~~~~~~~---------~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~ 612 (789)
--|..|.-.-..+++|...-...-+.. +--+.|.++- ||-. .--.|-|+++=+|-.
T Consensus 96 aiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~-Arsv-----~ldLppFTLIGATTr 160 (332)
T COG2255 96 AILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPA-ARSI-----RLDLPPFTLIGATTR 160 (332)
T ss_pred HHHHCCCCCCEEEEEHHHHCCHHHHHHHHHHHHHEEEEEEECCCCC-CCEE-----ECCCCCEEEEEECCC
T ss_conf 9986398677677725531474289896467531057789724875-5347-----637998137510134
No 91
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=90.77 E-value=0.22 Score=26.86 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=23.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 99970788625789999999723300034
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~~~ 532 (789)
+-+.|+.++|||||.+.|...||...+..
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~~~~~ 30 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIFGREGVPA 30 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 89989985719999999999966058776
No 92
>CHL00176 ftsH cell division protein; Validated
Probab=90.70 E-value=1 Score=22.47 Aligned_cols=165 Identities=17% Similarity=0.169 Sum_probs=85.0
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 01378888757947899999888799999999999999997598743379999707886257899999997233000344
Q gi|254781225|r 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 (789)
Q Consensus 454 ~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~ 533 (789)
..+.+.|+.-|-|.+-.+-| .|+++||..---|.-.| .+-.+=++|+||.++||+.+...+..=-|--..+..
T Consensus 170 ~~~~vtF~DVaG~~eaK~el------~EivdfLk~P~k~~~~G-ak~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF~~~s 242 (631)
T CHL00176 170 AKTGITFNDVAGVEEAKEEL------EEVVTFLKKPERFTAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS 242 (631)
T ss_pred CCCCCCCCCCCCCHHHHHHH------HHHHHHHCCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEE
T ss_conf 89997753228858999999------99999835958876449-968965898898998788999998565588469988
Q ss_pred CHHHHHHCCCCCCC--CCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECC-CEEEEEECC-----CCCCEEEECCEE
Q ss_conf 26764201245555--6898899738980999934677760131002454159-858732104-----786068714528
Q gi|254781225|r 534 EASDIMQNRPPEAG--KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNY-----GNTYSESPASFT 605 (789)
Q Consensus 534 ~~~~~~~~~~~~~~--~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltgg-D~i~ar~~~-----~~~~~~~~p~~~ 605 (789)
...+.+.--+-.+. ..-|+.|+-.--.+++++|.+.-.+-.. ..+.|| |.- -+-++ -+.|. -...-.
T Consensus 243 gs~F~e~~vGvga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg---~~~~gg~~e~-e~tlnqLL~emDGf~-~~~gVi 317 (631)
T CHL00176 243 GSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRG---AGVGGGNDER-EQTLNQLLTEMDGFE-GNKGVI 317 (631)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCC---CCCCCCCCHH-HHHHHHHHHHHCCCC-CCCCEE
T ss_conf 37855642155589999999999863996999871012011478---9888985089-999999999842888-788869
Q ss_pred EEEECCCCCCCCCCCCCEEE-----EEEEEECC
Q ss_conf 99973886342679841664-----68999658
Q gi|254781225|r 606 PFIVPNKHLFVRNPDDAWWR-----RYIVIPFD 633 (789)
Q Consensus 606 ~~~~~N~~P~~~~~d~~~~r-----R~~iipF~ 633 (789)
++-+||+ |. .-|.|+-| |-+.||.+
T Consensus 318 ViaATNr-pd--~LDpALlRPGRFDR~I~V~lP 347 (631)
T CHL00176 318 VIAATNR-ID--ILDAALLRPGRFDRQVTVSLP 347 (631)
T ss_pred EEEECCC-CC--CCCHHHCCCCCCCEEEEECCC
T ss_conf 9982588-55--456866268877549982698
No 93
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.55 E-value=0.37 Score=25.41 Aligned_cols=34 Identities=18% Similarity=0.429 Sum_probs=27.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCH
Q ss_conf 7999970788625789999999723300-034426
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEA 535 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~ 535 (789)
++++|.|++++|||++...|+.++..-. ..+.+.
T Consensus 3 ~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 49998689989889999999984767568841858
No 94
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=90.47 E-value=0.83 Score=23.09 Aligned_cols=70 Identities=27% Similarity=0.422 Sum_probs=26.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 9999707886257899999997233000344267642012455556898899738980999934677760131
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~ 575 (789)
.+++.||.+.|||-+.--|..-+|.. +.+.+..++- ++.+.|.++|....+.|..--.++..+..+..++
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~~e-IIs~DSmQvY--r~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa 74 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLGGE-IISLDSMQVY--RGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSA 74 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-EEECCHHHHC--CCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCH
T ss_conf 79998988757789999999982992-8930235531--8886307999999985899787545683225549
No 95
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=90.45 E-value=0.24 Score=26.66 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=22.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++.+.|+-|.|||||+++|..++-.
T Consensus 31 ~~Ge~~~i~G~sGsGKSTLlk~i~gl~~p 59 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLISP 59 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 59969999999999999999999646688
No 96
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.39 E-value=0.21 Score=27.09 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=23.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..--++.+.|+.|+||||++++|..++-.
T Consensus 28 ~~Ge~~~iiGpsGsGKSTLl~~i~Gl~~p 56 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79989999999995799999999759998
No 97
>pfam08800 VirE_N VirE N-terminal domain. This presumed domain is found at the N-terminus of VirE proteins.
Probab=90.39 E-value=0.76 Score=23.35 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=23.4
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCC-EEEEEEE
Q ss_conf 987999964688125678999876418997699678896-5999950
Q gi|254781225|r 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK-ILIPFRM 108 (789)
Q Consensus 63 ~glv~iDiD~~d~~~~~~~~~~~~~l~g~p~~~~g~~~~-~~~~yr~ 108 (789)
+|+++||||+.+.+-...+.+.+....-+-.+-++.+|+ ..++.++
T Consensus 31 sgli~lDiD~l~~ee~~~~r~~l~~dp~t~~~FvSpSG~GvKi~V~~ 77 (136)
T pfam08800 31 NGLVCLDVDHLAKEELERVKQKAAALPYTVLAFISSSGRGVKIWVRF 77 (136)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEE
T ss_conf 88089982899989999999998469948999985799879999997
No 98
>pfam00503 G-alpha G-protein alpha subunit. G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase.
Probab=90.36 E-value=0.29 Score=26.12 Aligned_cols=47 Identities=4% Similarity=-0.016 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEE--CCCCCHHHHHHHHHHHHCC
Q ss_conf 9999999999999759874337999970--7886257899999997233
Q gi|254781225|r 481 EVMDYFTRCVGMALLGGNKAQRFIHIRG--VGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 481 e~~~~l~~~~g~~l~g~~~~~~~~~~~G--~G~nGKSt~~~~l~~llG~ 527 (789)
+.+.|+...+-...........+..++- ...|=+-||-.+-..++..
T Consensus 295 ~~~~fi~~kF~~~~~~~~~r~iy~h~T~AtDt~~i~~vf~~v~d~Il~~ 343 (350)
T pfam00503 295 AAKEFIKKKFVSLNRNNPKKEIYSHFTCATDTENIRFVFDAVKDIILQE 343 (350)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999975679889826652153205088999999999999999
No 99
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=90.35 E-value=0.72 Score=23.51 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC-CCCCCCCCHHHHHH
Q ss_conf 79999999999999999759874337999970788625789999999723-30003442676420
Q gi|254781225|r 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQ 540 (789)
Q Consensus 477 ~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG-~~~~~~~~~~~~~~ 540 (789)
+.|++-..-+-+.+|..| ...-.+.|.|.=+.||+||..-|..-|| +.++.|++.+++..
T Consensus 5 ~~~~~~t~~lg~~l~~~l----~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~~ 65 (149)
T COG0802 5 LPDEEATLALGERLAEAL----KAGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTLVEE 65 (149)
T ss_pred CCCHHHHHHHHHHHHHHC----CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEHH
T ss_conf 289999999999999657----8998899977876885999999999749997524987610121
No 100
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.29 E-value=0.21 Score=27.02 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=22.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..--++.+.|+.++||||++++|..+...
T Consensus 26 ~~Ge~~~iiGpSGsGKSTll~~i~Gl~~p 54 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999997799999999769999
No 101
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=90.22 E-value=0.35 Score=25.61 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=7.3
Q ss_pred HCCHHHHHHHHHE
Q ss_conf 4263888875432
Q gi|254781225|r 689 GTDTYQAWIDDCC 701 (789)
Q Consensus 689 ~~D~v~~fi~e~c 701 (789)
..|.+.+|+-|+.
T Consensus 565 ~~dI~~qFL~Ea~ 577 (648)
T PRK10535 565 ASDVLQQFLIEAV 577 (648)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8899999999999
No 102
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.15 E-value=0.25 Score=26.51 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=19.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 33799997078862578999999972330
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
...++-+.|+-|.||||++++|..++...
T Consensus 34 ~Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~ 62 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIEKVK 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99899999999997999999996497998
No 103
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=90.15 E-value=0.95 Score=22.68 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=67.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCC------C--------------------------CCHHHHHHCC--------
Q ss_conf 99997078862578999999972330003------4--------------------------4267642012--------
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVI------N--------------------------AEASDIMQNR-------- 542 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~~------~--------------------------~~~~~~~~~~-------- 542 (789)
=+++.|+-|+||||+..-+..+|.+-... + ++... +..+
T Consensus 31 gvLi~G~~GtgKStlaR~l~~iLP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~lPl~a-tedr~~G~ldie 109 (334)
T PRK13407 31 GVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAEVSSTTMVERPTPVIDLPLGA-TEDRVVGALDIE 109 (334)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCHH
T ss_conf 0899789986599999999972899511036755667742113343114555344899876789999-986644742188
Q ss_pred -C--CCCCCCCHHHHHHCCCEEEEEECCCCCC-CCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCC
Q ss_conf -4--5555689889973898099993467776-01310024541598587321047860687145289997388634267
Q gi|254781225|r 543 -P--PEAGKANPSLIRLMGSRIVIISETNEND-EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 (789)
Q Consensus 543 -~--~~~~~~~~~la~l~g~r~~~~~E~~~~~-~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~ 618 (789)
. .......|.+..+.+.-+.+++|.+.-. .+-+.++-.+-.|. ++.++- +-. +.+.-.|.+|-+.|- .=..
T Consensus 110 ~al~~G~~~~~PGlLa~Ah~GVLylDEinll~~~vld~Ll~~~e~G~-~~IeRe-g~s-~~~ParF~LVatmNP--eEg~ 184 (334)
T PRK13407 110 RALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGE-NVVERE-GLS-IRHPARFVLVGSGNP--EEGE 184 (334)
T ss_pred HHHHCCCCCCCCCHHHHCCCCEEEEECHHHCCHHHHHHHHHHHHCCC-EEEEEC-CEE-EECCCCCEEEEEECC--CCCC
T ss_conf 88626987788605434028867872053333889999998871695-799977-634-603662658982088--8777
Q ss_pred CCCCEEEEEEE-EECCC
Q ss_conf 98416646899-96588
Q gi|254781225|r 619 PDDAWWRRYIV-IPFDK 634 (789)
Q Consensus 619 ~d~~~~rR~~i-ipF~~ 634 (789)
-...+-.|+-+ |....
T Consensus 185 Lrp~lLDRf~l~v~v~~ 201 (334)
T PRK13407 185 LRPQLLDRFGLSVEVRS 201 (334)
T ss_pred CCHHHHHHHCEEEEECC
T ss_conf 59899836100687148
No 104
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.13 E-value=0.23 Score=26.84 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=21.8
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++.+.|+.|.||||++++|..++-.
T Consensus 23 ~~Ge~~~iiGpSGsGKSTLlr~i~Gl~~p 51 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIKP 51 (235)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999963599999999749999
No 105
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.12 E-value=0.22 Score=26.86 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=7.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9999707886257899999997
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~l 524 (789)
|+-+.|+.|-||||++++|..+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999899978899999999687
No 106
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.08 E-value=0.26 Score=26.47 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
..--++.+.|+-|+||||++++|..++...
T Consensus 24 ~~Gei~~iiG~nGaGKSTLl~~i~Gl~~p~ 53 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKES 53 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 699899998899998999999995685777
No 107
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.07 E-value=0.24 Score=26.68 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++.+.|+.++||||++++|..+.-.
T Consensus 24 ~~Ge~~~ivGpSG~GKSTllr~i~Gl~~p 52 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999998399999999859999
No 108
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=90.05 E-value=0.23 Score=26.78 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=10.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99997078862578999999972
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
++-+.|+-|.||||++++|..++
T Consensus 29 ~~~lvGpnGaGKSTLl~~i~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999846999999997599
No 109
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=90.00 E-value=0.31 Score=25.96 Aligned_cols=16 Identities=6% Similarity=0.077 Sum_probs=7.7
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 8875794789999988
Q gi|254781225|r 460 FVEGEPSQEFLDLVSG 475 (789)
Q Consensus 460 y~~~a~~p~~~~~l~~ 475 (789)
+.|.+.|+.....+..
T Consensus 534 ~~~~~~~~~~~~~~~~ 549 (1063)
T TIGR00618 534 LLPGADTSRLEAGEDE 549 (1063)
T ss_pred HCCCCCCHHHHHHHHH
T ss_conf 2689861589999999
No 110
>PHA02244 ATPase-like protein
Probab=90.00 E-value=1.1 Score=22.38 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=82.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC--CC-CCCCCHHHHHHCCCCCCCCCCHHHHHH-CCCEEEEEECCCCCCCCCCC
Q ss_conf 379999707886257899999997233--00-034426764201245555689889973-89809999346777601310
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN--QY-VINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAA 576 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~--~~-~~~~~~~~~~~~~~~~~~~~~~~la~l-~g~r~~~~~E~~~~~~~~~~ 576 (789)
-.-+++.|+.++||.....-|...|-- |. .+......+.+-..+++.-+...+.+. ..--+....|.+.+..-.-.
T Consensus 119 nipV~L~G~AGsGKt~~A~qIA~aLdl~FYf~gAI~~ef~L~Gf~DAnG~yh~T~f~kaFk~GGLfLlDEiDASnP~aL~ 198 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEALI 198 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCEECCCCCEECCHHHHHHHCCCEEEEEHHCCCCHHHHH
T ss_conf 98569975888863489999999858882441323013430125648996726389999861887997320044879999
Q ss_pred EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCC-------CC-CCCCEEEEEEEEECCC
Q ss_conf 0245415985873210478606871452899973886342-------67-9841664689996588
Q gi|254781225|r 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-------RN-PDDAWWRRYIVIPFDK 634 (789)
Q Consensus 577 ~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~-------~~-~d~~~~rR~~iipF~~ 634 (789)
.|-+-+.++.+ ++. +..+..-+.|.++-++|..=.- +. -|.|...|+..|||..
T Consensus 199 ~lNaALAN~fm--~FP--dG~V~~HedFr~IAagNT~G~Gad~~YVGRnqLD~ATLDRFv~ie~~Y 260 (383)
T PHA02244 199 IINSAIANKFF--DFA--DERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDY 260 (383)
T ss_pred HHHHHHHCCCC--CCC--CCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHEEECCCCC
T ss_conf 99899864763--476--421100576389972465677887221144545646462036445683
No 111
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=89.97 E-value=0.19 Score=27.26 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=23.5
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 743379999707886257899999997233
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.....++-+.|+-++||||++++|..++..
T Consensus 30 i~~Ge~~~ilGpnGsGKSTLl~~i~G~~~~ 59 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRVEG 59 (226)
T ss_pred EECCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 918809999989996099999999678978
No 112
>PRK08903 hypothetical protein; Validated
Probab=89.94 E-value=0.63 Score=23.88 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=66.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 78888757947899999888799999999999999997598743379999707886257899999997233000344267
Q gi|254781225|r 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 (789)
Q Consensus 457 ~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~ 536 (789)
++.++|.. .|+.|+.. ++..++..+.++.. .... ..++++||+.|+|||=++..+.+-.......+.-
T Consensus 8 ~~~l~~~~---tfdnFv~g--~n~~~~~~l~~~~~----~~~~-~~~l~i~G~~G~GKTHLl~a~~~~~~~~~~~~~y-- 75 (227)
T PRK08903 8 DLGPPPPP---TFDNFIAG--ENAELVTRLRELAA----GPVA-DRFFYLWGEAGSGRSHLLQALVAAASEGGKNARY-- 75 (227)
T ss_pred CCCCCCCC---CHHCCCCC--CHHHHHHHHHHHHH----CCCC-CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE--
T ss_conf 99999987---64315577--75999999998874----3887-8669998999998889999999999806997499--
Q ss_pred HHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEE--CCEEEEEECCCCC
Q ss_conf 64201245555689889973898099993467776013100245415985873210478606871--4528999738863
Q gi|254781225|r 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP--ASFTPFIVPNKHL 614 (789)
Q Consensus 537 ~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~--p~~~~~~~~N~~P 614 (789)
+... .....+.......++++.+.+. ++ ++. . ..+| .-+.... -...++++++..|
T Consensus 76 -l~~~------~~~~~~~~~~~~d~l~iDDi~~---i~---------~~~-q-~~lF-~l~N~~~~~~~~~ll~s~~~~p 133 (227)
T PRK08903 76 -LDPA------SPLLAFDFDPRAELYAVDDVER---LD---------DAQ-Q-IALF-NLFNRVRAHGKTALLVAGPAAP 133 (227)
T ss_pred -ECCC------CCHHHHHHHHCCCEEEEECCCC---CC---------CHH-H-HHHH-HHHHHHHHCCCCEEEECCCCCH
T ss_conf -6511------0457774200189899964114---89---------569-9-9999-9999999729948997189971
Q ss_pred CCCCCCCCEEEEEE
Q ss_conf 42679841664689
Q gi|254781225|r 615 FVRNPDDAWWRRYI 628 (789)
Q Consensus 615 ~~~~~d~~~~rR~~ 628 (789)
..-+...-+-.|+.
T Consensus 134 ~~l~~~~DL~SRl~ 147 (227)
T PRK08903 134 LALDVREDLRTRLG 147 (227)
T ss_pred HHCCCCHHHHHHHH
T ss_conf 20120089999993
No 113
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=89.93 E-value=1.1 Score=22.18 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=25.8
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 874337999970788625789999999723300
Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
......++-+-|+.++|||||.+.|...|+...
T Consensus 30 ~~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~ 62 (230)
T PRK09270 30 EPQRRTVVGIAGPPGAGKSTLAETLWEALSQQG 62 (230)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999718999989998899999999999986237
No 114
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.92 E-value=0.29 Score=26.13 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=22.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
..-.++-+.|+.|+||||++++|..++...
T Consensus 31 ~~Ge~~aiiG~nGsGKSTLl~~l~GLl~p~ 60 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLKPT 60 (286)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 699899999999981999999997078888
No 115
>PRK06893 DNA replication initiation factor; Validated
Probab=89.90 E-value=1.1 Score=22.20 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=46.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC--CCCCHHHHHHCCCC
Q ss_conf 7899999888799999999999999997598743379999707886257899999997233000--34426764201245
Q gi|254781225|r 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV--INAEASDIMQNRPP 544 (789)
Q Consensus 467 p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~--~~~~~~~~~~~~~~ 544 (789)
+.|+.|+.. .+.+++..+++.+. .....++++||+.|+|||-+++.+.+-+-..+. .-.+..... ..
T Consensus 13 ~tfdnF~~~--~n~~~~~~l~~~~~------~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~-~~-- 81 (229)
T PRK06893 13 ETLDNFYSD--NNLLLLDSLRKNFI------DLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ-YF-- 81 (229)
T ss_pred CCHHCCCCC--CHHHHHHHHHHHCC------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHH-HC--
T ss_conf 654315468--74999999997550------24698799989999988999999999999718985999737756-40--
Q ss_pred CCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 555689889973898099993467
Q gi|254781225|r 545 EAGKANPSLIRLMGSRIVIISETN 568 (789)
Q Consensus 545 ~~~~~~~~la~l~g~r~~~~~E~~ 568 (789)
....+..+...-++++++.+
T Consensus 82 ----~~~~l~~l~~~d~l~iDDi~ 101 (229)
T PRK06893 82 ----SPAVLENLEQQDLVCLDDLQ 101 (229)
T ss_pred ----CHHHHHHHHHCCEEEEECHH
T ss_conf ----69999876547979996723
No 116
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.88 E-value=0.25 Score=26.54 Aligned_cols=29 Identities=34% Similarity=0.660 Sum_probs=23.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 33799997078862578999999972330
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.-.++.+.|+-|+||||++++|..++-..
T Consensus 26 ~G~i~~l~G~NGaGKSTLlkli~Gl~~p~ 54 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLNPE 54 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99799998899987999999997785889
No 117
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=89.83 E-value=0.26 Score=26.44 Aligned_cols=29 Identities=34% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
...-++-+.|+.|+||||++++|..++-.
T Consensus 29 ~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p 57 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 69989999999998699999999728987
No 118
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.82 E-value=0.25 Score=26.49 Aligned_cols=28 Identities=39% Similarity=0.522 Sum_probs=19.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4337999970788625789999999723
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
..-.++-+.|+.|+||||++++|..++-
T Consensus 24 ~~Ge~~~iiG~SGsGKSTll~~i~gL~~ 51 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7998999999999729999999975999
No 119
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.80 E-value=0.25 Score=26.59 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=19.4
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 337999970788625789999999723
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
.-.++.+.|+.|+||||++++|..+.-
T Consensus 25 ~Ge~~~iiGpSGsGKSTllr~i~Gl~~ 51 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998999999999839999999977999
No 120
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=89.77 E-value=0.29 Score=26.15 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=23.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 33799997078862578999999972330
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.-.++.+.|+-|.|||||+++|..++-..
T Consensus 25 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~ 53 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGLSPPL 53 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99599999999999999999996677888
No 121
>pfam09079 Cdc6_C CDC6, C terminal. The C terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity.
Probab=89.68 E-value=1.1 Score=22.16 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=44.9
Q ss_pred CCCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEC
Q ss_conf 88411179999999999985046675554525689999863542333100102567652089979865
Q gi|254781225|r 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 (789)
Q Consensus 705 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~~Gi~Lk 772 (789)
........++|+.|.+-|+.. +..++|++.|..-+.++.+.|-+..+...++.+.+| .+-++|.
T Consensus 12 ~~~~~~tg~vy~~Y~~lc~~~---~~~~lt~rr~~~~l~~L~~~gii~~~~~~~G~~~G~-~~~~~L~ 75 (85)
T pfam09079 12 GTPETTTGEVYEVYKELCEEL---GVDPLTQRRISDLLSELEMLGILETEVVSRGRGGGR-TKKISLN 75 (85)
T ss_pred CCCCCCHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCE-EEEEEEC
T ss_conf 999872789999999999982---987652999999999999658500578148867864-7899833
No 122
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.67 E-value=0.26 Score=26.41 Aligned_cols=25 Identities=36% Similarity=0.406 Sum_probs=20.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 3799997078862578999999972
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
.-++-+.|+.+.||||++++|..+.
T Consensus 23 ge~~~iiGpSGsGKSTll~~i~GL~ 47 (214)
T cd03297 23 EEVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9799999999735999999998499
No 123
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=89.66 E-value=0.35 Score=25.54 Aligned_cols=19 Identities=5% Similarity=-0.108 Sum_probs=9.9
Q ss_pred CCCCCHHHHHHHHHHHHCC
Q ss_conf 7886257899999997233
Q gi|254781225|r 509 VGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 509 ~G~nGKSt~~~~l~~llG~ 527 (789)
...|=+.||-.+-..++..
T Consensus 295 Dt~~i~~vf~~v~d~I~~~ 313 (317)
T cd00066 295 DTENIRFVFDAVKDIILQN 313 (317)
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 5289999999999999998
No 124
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=89.65 E-value=0.54 Score=24.30 Aligned_cols=129 Identities=19% Similarity=0.164 Sum_probs=62.3
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-C-----------------CCCHHHHHHCCCCCCC
Q ss_conf 999999997598743379999707886257899999997233000-3-----------------4426764201245555
Q gi|254781225|r 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-I-----------------NAEASDIMQNRPPEAG 547 (789)
Q Consensus 486 l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~-----------------~~~~~~~~~~~~~~~~ 547 (789)
+++...+..... +.+..++++|+-+.||+|+...+...++.... . ..+...+........+
T Consensus 10 ~~~l~~~~~~~~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~ 88 (325)
T COG0470 10 VKRLLVQALESG-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID 88 (325)
T ss_pred HHHHHHHHHHCC-CCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf 999999998658-8876100379999978999999999965866433455200224443202568865997732133330
Q ss_pred CCCHH----HHH-------HCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCC
Q ss_conf 68988----997-------3898099993467776013100245415985873210478606871452899973886342
Q gi|254781225|r 548 KANPS----LIR-------LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 (789)
Q Consensus 548 ~~~~~----la~-------l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~ 616 (789)
..-+ +++ .-+.+++++.|.+.-.. |...| + .+...+......+++.||..-.+
T Consensus 89 -i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~na--l-lk~lEep~~~~~~il~~n~~~~i 152 (325)
T COG0470 89 -IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANA--L-LKTLEEPPKNTRFILITNDPSKI 152 (325)
T ss_pred -CHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCH------------HHHHH--H-HHHCCCCCCCEEEEEEECCHHHC
T ss_conf -06999999998604465667726999732032698------------88876--7-54332488871699974985556
Q ss_pred CCCCCCEEEEEEEEECCC
Q ss_conf 679841664689996588
Q gi|254781225|r 617 RNPDDAWWRRYIVIPFDK 634 (789)
Q Consensus 617 ~~~d~~~~rR~~iipF~~ 634 (789)
.. -+-.|..+|.|..
T Consensus 153 l~---tI~SRc~~i~f~~ 167 (325)
T COG0470 153 LP---TIRSRCQRIRFKP 167 (325)
T ss_pred HH---HHHHHEEEEECCC
T ss_conf 47---8775607887677
No 125
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=89.64 E-value=0.35 Score=25.54 Aligned_cols=47 Identities=4% Similarity=-0.019 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEE--CCCCCHHHHHHHHHHHHC
Q ss_conf 99999999999999759874337999970--788625789999999723
Q gi|254781225|r 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRG--VGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 480 ~e~~~~l~~~~g~~l~g~~~~~~~~~~~G--~G~nGKSt~~~~l~~llG 526 (789)
++...|+...+-...........+..++= ...|=+-||..+-..++.
T Consensus 287 ~~~~~fi~~~F~~~~~~~~~r~~y~h~T~AtDt~~i~~vf~~v~d~Il~ 335 (342)
T smart00275 287 EAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCEECHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998577988972686667314508899999999999999
No 126
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.62 E-value=0.3 Score=26.04 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=12.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 799997078862578999999972
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
.++-+.|+-|+||||++++|..++
T Consensus 29 e~vaiiG~nGsGKSTL~~~l~Gll 52 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999999999980999999997068
No 127
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=89.62 E-value=0.29 Score=26.10 Aligned_cols=31 Identities=35% Similarity=0.414 Sum_probs=24.8
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 7433799997078862578999999972330
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
...-.++-+.|+-|.||||++++|..++...
T Consensus 22 i~~GE~v~iiG~nGaGKSTLl~~i~Gll~p~ 52 (233)
T PRK10771 22 VERGEQVAILGPSGAGKSTLLNLIAGFLTPA 52 (233)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 8899899999999981999999996599998
No 128
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=89.62 E-value=1 Score=22.53 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=32.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 999998887999999999999999975987433799997078862578999999972
Q gi|254781225|r 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 469 ~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
.++++..=+-.++..+||..++ +.++-++..|..++||+||+|.|...+
T Consensus 120 l~dlv~~g~~t~~~~~~L~~aV--------~~r~nilVsGgTGSGKTTllnaL~~~i 168 (323)
T PRK13833 120 LDDYVRSKVMTEAQASTIRSAI--------SSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHCCCCCHHHHHHHHHHH--------HCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999876999999999999999--------818968999177775689999999864
No 129
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=89.61 E-value=0.45 Score=24.86 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=27.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCH
Q ss_conf 7999970788625789999999723300-034426
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEA 535 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~ 535 (789)
.+++|.|++++|||++...|+.++..-. ..+.+.
T Consensus 2 ~II~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~ 36 (174)
T pfam07931 2 RIILLNGGSSSGKSSIARALQDILDGPWLHFGVDA 36 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 19997489988879999999984747467642858
No 130
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=89.61 E-value=0.32 Score=25.85 Aligned_cols=26 Identities=35% Similarity=0.415 Sum_probs=23.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99707886257899999997233000
Q gi|254781225|r 505 HIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789)
Q Consensus 505 ~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789)
+++|+.|+|||||++.|.+-++.|..
T Consensus 520 ~IfG~~G~GKTtLl~fL~a~~~ky~~ 545 (931)
T TIGR00929 520 LIFGPTGSGKTTLLNFLLAQLQKYKP 545 (931)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 78888898469999999999742488
No 131
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=89.60 E-value=0.31 Score=25.96 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=16.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 37999970788625789999999723
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
-.++.++|+-|+||||++++|..++-
T Consensus 29 G~~iaIvG~sGsGKSTLl~ll~gl~~ 54 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999999989999999823861
No 132
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.59 E-value=0.26 Score=26.44 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=21.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++-+.|+.|+||||++++|..++-.
T Consensus 18 ~~Ge~vaiiG~sGsGKSTLl~~l~GLl~P 46 (276)
T PRK13634 18 PSGSYVAIIGHTGSGKSTLLQHLNGLLKP 46 (276)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999996999999999749998
No 133
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=89.54 E-value=0.26 Score=26.46 Aligned_cols=30 Identities=33% Similarity=0.385 Sum_probs=23.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
...-++-+.|+-|+||||++++|..++-..
T Consensus 34 ~~GE~v~ivG~sGsGKSTLl~~i~Gl~~p~ 63 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDGS 63 (228)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 999899999999858999999996699999
No 134
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=89.51 E-value=0.28 Score=26.23 Aligned_cols=27 Identities=33% Similarity=0.472 Sum_probs=16.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 379999707886257899999997233
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
--++-+.|+-|+|||||+++|..++-.
T Consensus 33 GE~v~IiG~nGsGKSTL~k~l~Gll~P 59 (304)
T PRK13651 33 GEFIAIIGQTGSGKTTFIEHLNALLLP 59 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 989999879998599999999669998
No 135
>PRK05642 DNA replication initiation factor; Validated
Probab=89.36 E-value=1.3 Score=21.76 Aligned_cols=97 Identities=16% Similarity=0.304 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC--CCCCC
Q ss_conf 7888875794789999988879999999999999999759874337999970788625789999999723300--03442
Q gi|254781225|r 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY--VINAE 534 (789)
Q Consensus 457 ~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~--~~~~~ 534 (789)
++..++. ..|+.|+.. .+.....++.+++-- .......+++++|+.|+|||-++..++.-+...+ +.-.+
T Consensus 9 ~~~l~~~---~tfdnFi~g--~N~~a~~~~~~l~~~---~~~~~~~~l~i~G~~G~GKTHLL~A~~~~~~~~~~~~~yl~ 80 (234)
T PRK05642 9 GVRLRDD---ATFANYYPG--ANAAALGYVERLCEA---DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCCCCCC---CCHHCCCCC--CCHHHHHHHHHHHHC---CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999997---773035718--759999999998760---67877883899889999889999999999980799679978
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 6764201245555689889973898099993467
Q gi|254781225|r 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 (789)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~ 568 (789)
...+... ....+-.+...-++++++.+
T Consensus 81 ~~~~~~~-------~~~~~~~l~~~d~l~IDDi~ 107 (234)
T PRK05642 81 LAELLDR-------GPELLDNLEQYELVCIDDLD 107 (234)
T ss_pred HHHHHHH-------HHHHHHHHHHCCEEEEECHH
T ss_conf 9998754-------49998624227989893645
No 136
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=89.32 E-value=0.28 Score=26.20 Aligned_cols=30 Identities=37% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.+-.++.+.|+.|+|||||+++|..++-..
T Consensus 28 ~~Ge~~~iiG~sGsGKTTll~~i~Gl~~p~ 57 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPT 57 (218)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 699899999999986999999996699999
No 137
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.32 E-value=0.28 Score=26.17 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=19.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4337999970788625789999999723
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
....++.+.|+.|.||||++++|..++-
T Consensus 25 ~~Ge~~~ilGpSG~GKSTllr~i~gl~~ 52 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6998999999999569999999975999
No 138
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=89.30 E-value=0.28 Score=26.26 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=27.5
Q ss_pred HHHHHHHHH---HHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 478999998---887999999999999999975987433799997078862578999999972
Q gi|254781225|r 466 SQEFLDLVS---GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 466 ~p~~~~~l~---~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
.|.+.++.. .|.+|=|+ +.+. .-.....+++-+ +|.|||||...++..||
T Consensus 80 hp~~~~a~~~g~~v~gdi~L---~~~~-----~~~~~~~~~~aI--TGTnGKtTTT~L~~~~L 132 (476)
T TIGR01087 80 HPLVQAAAKRGIPVVGDIEL---ALRL-----VDFPEPAKVVAI--TGTNGKTTTTSLLYHLL 132 (476)
T ss_pred CHHHHHHHHCCCEEEEHHHH---HHHH-----CCCCCCCCEEEE--ECCCCHHHHHHHHHHHH
T ss_conf 77999999669808986799---9974-----157898737999--72686079999999999
No 139
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.30 E-value=0.33 Score=25.78 Aligned_cols=31 Identities=39% Similarity=0.471 Sum_probs=24.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9997078862578999999972330003442
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~ 534 (789)
+-+.|+.++|||||.+.|...|+...++.++
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~~~~v~~i~ 32 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIIS 32 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8988999885999999999980999858997
No 140
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.27 E-value=0.3 Score=26.06 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=17.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 337999970788625789999999723
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
...++.++|+-++|||||+++|..++-
T Consensus 28 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 54 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999999809999999966866
No 141
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=89.27 E-value=0.73 Score=23.44 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=4.6
Q ss_pred EEEEEECCCCCCC
Q ss_conf 9999507310244
Q gi|254781225|r 103 LIPFRMNKEGIKK 115 (789)
Q Consensus 103 ~~~yr~~~~~~~~ 115 (789)
+++|-+-+.+-++
T Consensus 104 qiL~LlGPVggGK 116 (649)
T COG2766 104 QILYLLGPVGGGK 116 (649)
T ss_pred HHHEEECCCCCCH
T ss_conf 5530435678766
No 142
>PRK01156 chromosome segregation protein; Provisional
Probab=89.27 E-value=0.53 Score=24.39 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=5.9
Q ss_pred HCCEEEEECC
Q ss_conf 0788999234
Q gi|254781225|r 51 ACGFGFVCGV 60 (789)
Q Consensus 51 ~~giGi~~G~ 60 (789)
..|+=+++|+
T Consensus 22 ~~Gi~~I~G~ 31 (895)
T PRK01156 22 DTGINIITGK 31 (895)
T ss_pred CCCCEEEECC
T ss_conf 9992788899
No 143
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=89.23 E-value=0.26 Score=26.48 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9999707886257899999997
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~l 524 (789)
-+.++|..|+|||+|+|.++.+
T Consensus 3 ~iaVtGesGaGKSSfINAlRGl 24 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGV 24 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999558998689999998688
No 144
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.21 E-value=0.29 Score=26.07 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=23.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
....+..+.|+-|+|||||+++|..++-.
T Consensus 24 ~~G~i~~i~G~NGsGKSTLlk~i~Gl~~p 52 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 79979999999998199999999679889
No 145
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=89.21 E-value=0.3 Score=26.05 Aligned_cols=29 Identities=34% Similarity=0.402 Sum_probs=22.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..--++-+.|+-|+||||++++|..+.-.
T Consensus 33 ~~GE~v~iiG~sGsGKSTLl~~i~Gl~~p 61 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDTP 61 (233)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89989999999994099999999669999
No 146
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=89.20 E-value=0.35 Score=25.60 Aligned_cols=14 Identities=0% Similarity=-0.097 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 88999999998621
Q gi|254781225|r 226 HDEWIPVVMAVHHE 239 (789)
Q Consensus 226 yd~W~~vg~al~~~ 239 (789)
+.-...+|.++.++
T Consensus 71 ~~LRr~IGYviQqi 84 (309)
T COG1125 71 VELRRKIGYVIQQI 84 (309)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99987533542221
No 147
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.19 E-value=0.28 Score=26.20 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=22.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++-+.|+-|+||||++++|..++-.
T Consensus 31 ~~Ge~~~iiG~nGsGKSTLl~~l~Gll~P 59 (286)
T PRK13641 31 EDGSFVALIGHTGSGKSTLMQHFNALLKP 59 (286)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 69999999999983999999999659898
No 148
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=89.18 E-value=0.32 Score=25.79 Aligned_cols=160 Identities=16% Similarity=0.211 Sum_probs=75.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCC-CCCCEEEEEEC
Q ss_conf 99707886257899999997233000344267642012455556898899738980999934677760-13100245415
Q gi|254781225|r 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE-INAAKIKQMTG 583 (789)
Q Consensus 505 ~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~-~~~~~~K~ltg 583 (789)
=+.|..++||||+.+.|..+||...++.+..-..-. - .+.+... +.+.. ..|+..+. +-...++.|-.
T Consensus 3 gVaG~SGSGKTTv~~~i~~ifg~~~v~vI~~D~Yhr----~---dr~~r~~---~~~t~-~~P~And~dll~~~l~~Lk~ 71 (273)
T cd02026 3 GVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS----L---DRKGRKE---TGITA-LDPRANNFDLMYEQLKALKE 71 (273)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCC----C---CHHHHHH---HCCCC-CCCCHHHHHHHHHHHHHHHC
T ss_conf 997888786999999999985848769996577788----9---9899987---18776-89752349999999999985
Q ss_pred CCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC-CHH-HHHCCCCHHHHHHHHHH
Q ss_conf 9858732104786068714528999738863426798416646899965887888787-833-42201204479999999
Q gi|254781225|r 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA-SFA-QKLETKYTLEAKKWFLK 661 (789)
Q Consensus 584 gD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~d~-~~~-~~~~~~e~~~i~~w~l~ 661 (789)
|-+|... .|.-..-.|.|.- .+.. ..+++++=-+.+.+++. ++. -+. --....-+.|+-+
T Consensus 72 Gk~i~~P-vYdh~tg~~~~~e----------~i~p------~diII~EGLh~l~~~~lrdl~DLkI-fVD~d~dlr~~rK 133 (273)
T cd02026 72 GQAIEKP-IYNHVTGLIDPPE----------LIKP------TKIVVIEGLHPLYDERVRELLDFSV-YLDISDEVKFAWK 133 (273)
T ss_pred CCCCCCC-CCCCCCCCCCCCE----------EECC------CCEEEEECEECCCCHHHHHHHCEEE-EECCCHHHHHHHH
T ss_conf 9953432-2214589657756----------5068------7479992200026688986607468-8568764799998
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 99999987889887889999999999842638888754
Q gi|254781225|r 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699 (789)
Q Consensus 662 g~~~~~~~g~~~~~p~~v~~a~~~y~~~~D~v~~fi~e 699 (789)
-.+...+.|.. .++|.+. +.+.+....+||.=
T Consensus 134 I~RD~~ERGyS---~E~V~~~---I~rR~pDy~~yI~P 165 (273)
T cd02026 134 IQRDMAERGHS---LEDVLAS---IEARKPDFEAYIDP 165 (273)
T ss_pred HHHHHHHHCCC---HHHHHHH---HHHHHHHHHHHCCC
T ss_conf 77667664889---9999999---98604788975075
No 149
>PRK10908 cell division protein FtsE; Provisional
Probab=89.15 E-value=0.29 Score=26.14 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=23.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..--++.+.|+-++||||++++|..++-.
T Consensus 26 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p 54 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 69989999999980799999999659999
No 150
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=89.13 E-value=0.31 Score=25.97 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=21.8
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4337999970788625789999999723
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
..--++.+.|+.+.||||++++|..+.-
T Consensus 24 ~~Ge~~~i~GpSG~GKSTlLr~iaGl~~ 51 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 6998999999998809999999976999
No 151
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=89.13 E-value=0.41 Score=25.11 Aligned_cols=26 Identities=42% Similarity=0.652 Sum_probs=22.0
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 37999970788625789999999723
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
..+++++|+-+.||||+++.+.-+++
T Consensus 21 g~~~iItGpN~sGKSt~Lr~i~l~~~ 46 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989987757999999999999
No 152
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.12 E-value=0.26 Score=26.42 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=24.2
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 7433799997078862578999999972330
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
...-.++.+.|+-+.||||++++|..++..+
T Consensus 30 i~~Gei~~llG~nGsGKSTLl~~l~G~~~~~ 60 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTEGN 60 (202)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 8098499999899998899999983787898
No 153
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.12 E-value=0.34 Score=25.65 Aligned_cols=30 Identities=23% Similarity=0.476 Sum_probs=23.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
..-.++-+.|+-++||||++++|..++-..
T Consensus 25 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~ 54 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLARPD 54 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 799899999999985999999997688888
No 154
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=89.07 E-value=0.31 Score=25.89 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++-+.|+-++||||++++|..++-.
T Consensus 26 ~~Gei~~llG~NGaGKSTLl~~i~Gl~~p 54 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 49959999989997399999999669878
No 155
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=89.04 E-value=0.33 Score=25.77 Aligned_cols=27 Identities=37% Similarity=0.407 Sum_probs=16.4
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 337999970788625789999999723
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
...++.+.|+-|+||||++++|..++.
T Consensus 26 ~Ge~~~liG~nGsGKSTll~~i~Gl~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998999999999809999999963899
No 156
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.00 E-value=0.52 Score=24.45 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=5.2
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 8888999999998
Q gi|254781225|r 224 GSHDEWIPVVMAV 236 (789)
Q Consensus 224 ~dyd~W~~vg~al 236 (789)
++-...+.+.|||
T Consensus 156 GGMrQRV~IAmal 168 (316)
T COG0444 156 GGMRQRVMIAMAL 168 (316)
T ss_pred CCHHHHHHHHHHH
T ss_conf 7189999999998
No 157
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.00 E-value=0.3 Score=25.97 Aligned_cols=29 Identities=31% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..--++-+.|+-|+||||++++|..++-.
T Consensus 31 ~~GE~v~iiG~nGsGKSTLl~~l~GLl~p 59 (287)
T PRK13637 31 EDGEFVALIGHTGSGKSTLIQHLNGLLKP 59 (287)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 79989999999993999999999739988
No 158
>PRK06217 hypothetical protein; Validated
Probab=88.99 E-value=0.42 Score=25.03 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=22.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99970788625789999999723300
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
++++|.+++|||||...|...+|-..
T Consensus 4 I~i~G~sGsGkSTla~~La~~l~~~~ 29 (185)
T PRK06217 4 IHITGASGSGTTTLGAALAEALDLPH 29 (185)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 99978998878999999999759896
No 159
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=88.98 E-value=0.39 Score=25.28 Aligned_cols=29 Identities=38% Similarity=0.470 Sum_probs=23.3
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 33799997078862578999999972330
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.-.++.+.|+-++||||++++|..++-..
T Consensus 27 ~Ge~~aivG~sGsGKSTLl~~l~G~~~p~ 55 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQ 55 (178)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 99999999999875999999998617667
No 160
>PRK13544 consensus
Probab=88.98 E-value=0.35 Score=25.59 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=24.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.....+.+.|+-|+||||++++|..++...
T Consensus 25 ~~Gei~~l~G~NGsGKSTLl~~i~Gl~~p~ 54 (208)
T PRK13544 25 KQNSLTLVIGNNGSGKTSLLRLLAGLIPIT 54 (208)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 299499999999998999999995880689
No 161
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=88.94 E-value=0.41 Score=25.11 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=17.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 37999970788625789999999723
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
...+-+.|+-|+||||++++|..++.
T Consensus 30 Ge~vaIvG~sGsGKSTLl~lL~gl~~ 55 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999979999999960357
No 162
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=88.93 E-value=0.34 Score=25.68 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=20.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4337999970788625789999999723
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
....++.+.|+-++||||++++|..++-
T Consensus 38 ~~Ge~vaIvG~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 2999999999999849999999964546
No 163
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.90 E-value=0.33 Score=25.77 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=15.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 37999970788625789999999723
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
-.++.++|+.|+|||||+++|..++-
T Consensus 28 Ge~i~IvG~sGsGKSTLl~ll~gl~~ 53 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999998999829999999966766
No 164
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.90 E-value=0.38 Score=25.31 Aligned_cols=30 Identities=43% Similarity=0.646 Sum_probs=23.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
..-.++-+.|+-|+||||++++|..++-.+
T Consensus 25 ~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p~ 54 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPT 54 (211)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 499799998899998999999996467798
No 165
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=88.90 E-value=0.33 Score=25.76 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=10.3
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 1012211148888999999998621
Q gi|254781225|r 215 SCFGEEFYNGSHDEWIPVVMAVHHE 239 (789)
Q Consensus 215 ~~~~~~~~~~dyd~W~~vg~al~~~ 239 (789)
+...-.+.|. |...-.++++|--+
T Consensus 79 ~~~~RfRvN~-f~QRg~~a~vlR~i 102 (350)
T TIGR01420 79 PGLARFRVNA-FKQRGGVALVLRLI 102 (350)
T ss_pred CCCCEEEEHH-HHHCCHHHHHHHHC
T ss_conf 6732212203-23500064232311
No 166
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.87 E-value=0.31 Score=25.90 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=16.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 337999970788625789999999723
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
..-++.+.|+.|.||||++++|..+.-
T Consensus 49 ~GE~~~ivG~SGsGKSTLLr~i~GL~~ 75 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999998998489999999975999
No 167
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.86 E-value=0.32 Score=25.79 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++-+.|+-|+||||++++|..++-.
T Consensus 30 ~~Ge~vaiiG~nGsGKSTLl~~l~Gll~p 58 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 59989999999994799999999748888
No 168
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=88.82 E-value=0.37 Score=25.39 Aligned_cols=27 Identities=37% Similarity=0.621 Sum_probs=22.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 379999707886257899999997233
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
--+..++|+.+.|||||+..++.+...
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 854887678876688999999813699
No 169
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=88.80 E-value=1.3 Score=21.74 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=71.2
Q ss_pred HHHHHHHH-CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCHHHHHHC-CCCC
Q ss_conf 99999888-79999999999999999759874337999970788625789999999723300-034426764201-2455
Q gi|254781225|r 469 FLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQN-RPPE 545 (789)
Q Consensus 469 ~~~~l~~~-~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~~~~~~~-~~~~ 545 (789)
....+.+. +++++.+. ..+-..+.|. -+++.|+-|.|||++...+...+|-.. .......+.... .+
T Consensus 18 ~~~~~~~~~~g~~~~~~---~~l~a~~~~~-----~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G-- 87 (329)
T COG0714 18 IRSELEKVVVGDEEVIE---LALLALLAGG-----HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLG-- 87 (329)
T ss_pred HHHHCCCCCCCCHHHHH---HHHHHHHCCC-----CEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCC--
T ss_conf 66522565526699999---9999998599-----7787798987779999999998389818995689988888205--
Q ss_pred CCCCCHHHHH--------------HCCC--EEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEE
Q ss_conf 5568988997--------------3898--09999346777601310024541598587321047860687145289997
Q gi|254781225|r 546 AGKANPSLIR--------------LMGS--RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 (789)
Q Consensus 546 ~~~~~~~la~--------------l~g~--r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~ 609 (789)
...... +... .+++++|.+....--.+.+-++...-.++.-.... ..+.+-|.++.+
T Consensus 88 ----~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vt~~~~~~---~~~~~~f~viaT 160 (329)
T COG0714 88 ----TYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTT---IRLPPPFIVIAT 160 (329)
T ss_pred ----HHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCEEEECCCCC---CCCCCCCEEEEE
T ss_conf ----6888766425771898468733451338998703458988999999999726897079665---337998789982
Q ss_pred CCCCCCCCCC--CCCEEEEEEEE
Q ss_conf 3886342679--84166468999
Q gi|254781225|r 610 PNKHLFVRNP--DDAWWRRYIVI 630 (789)
Q Consensus 610 ~N~~P~~~~~--d~~~~rR~~ii 630 (789)
+|..+.-... .+|+.+|+.+.
T Consensus 161 ~Np~e~~g~~~l~eA~ldRf~~~ 183 (329)
T COG0714 161 QNPGEYEGTYPLPEALLDRFLLR 183 (329)
T ss_pred CCCCCCCCCCCCCHHHHCCCEEE
T ss_conf 68676578878998888103887
No 170
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=88.80 E-value=0.34 Score=25.65 Aligned_cols=29 Identities=38% Similarity=0.399 Sum_probs=23.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++.+.|+-++||||++++|..++-.
T Consensus 26 ~~G~~vaIvG~sGsGKSTLl~ll~gl~~p 54 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 59999999999998099999999666667
No 171
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.77 E-value=0.34 Score=25.67 Aligned_cols=29 Identities=38% Similarity=0.529 Sum_probs=23.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++-+.|+-|+||||++++|..++-.
T Consensus 26 ~~Ge~i~ivG~sGsGKSTLl~ll~gl~~p 54 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 59989999999998399999999767758
No 172
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=88.74 E-value=1.3 Score=21.89 Aligned_cols=10 Identities=10% Similarity=0.022 Sum_probs=5.2
Q ss_pred HHHHHHHHCC
Q ss_conf 8999876418
Q gi|254781225|r 80 TFKDTFEILH 89 (789)
Q Consensus 80 ~~~~~~~~l~ 89 (789)
++...++.|.
T Consensus 34 ri~~ll~~lg 43 (416)
T PRK10846 34 RVSQVAARLD 43 (416)
T ss_pred HHHHHHHHCC
T ss_conf 9999999729
No 173
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=88.71 E-value=0.33 Score=25.73 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=16.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 37999970788625789999999723
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
--++-+.|+-|.|||||+++|..++-
T Consensus 26 GEi~gLiGpNGaGKSTLlk~i~Gll~ 51 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 80999989999709999999967986
No 174
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=88.67 E-value=0.35 Score=25.59 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=18.4
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 379999707886257899999997233
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.-++-+.|+-|+||||++++|..++-.
T Consensus 32 GEi~~iiG~nGaGKSTLl~~i~G~~~p 58 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 979999888998899999998567888
No 175
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.66 E-value=0.36 Score=25.52 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=12.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 7999970788625789999999723
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
-++-+.|+-|+||||++++|..++-
T Consensus 34 E~vaivG~nGsGKSTL~k~l~Gl~~ 58 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8999999999659999999972888
No 176
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=88.56 E-value=0.36 Score=25.52 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=11.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 799997078862578999999972
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
-++-+.|+.|+||||++++|..++
T Consensus 38 E~v~iiG~nGsGKSTL~r~l~gl~ 61 (281)
T PRK13633 38 EFLVILGHNGSGKSTIAKHMNALL 61 (281)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899999999984999999997588
No 177
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.54 E-value=0.34 Score=25.61 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=22.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4337999970788625789999999723
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
....++-+.|+-|+||||++++|..++-
T Consensus 31 ~~Ge~~aiiG~nGsGKSTLl~~l~Gl~~ 58 (280)
T PRK13649 31 LDGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 7998999995999869999999966999
No 178
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=88.54 E-value=0.36 Score=25.46 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 33799997078862578999999972330
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.--++.+.|+-|.||||++++|..++-..
T Consensus 36 ~Ge~~~l~GpNGaGKTTLlr~l~Gl~~p~ 64 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE 64 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 89899999999987999999997697788
No 179
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=88.51 E-value=0.72 Score=23.51 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=56.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 99997078862578999999972330003442676420124555568988997389809999346777601310024541
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~lt 582 (789)
.+..-|+.|+||||....|..-||=..+++-..-.|+++++.+- .. ...+.|-++=++.=...++.+.
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Lsl~~iSaG~iRelA~~~Gldl-------~E-----~~~aee~~eIDk~iD~~~~E~A 69 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIRELAEKMGLDL-------AE-----SKYAEENPEIDKKIDRRIREIA 69 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEECCCHHHHHHHHCCCCH-------HH-----HHHHCCCCCCCHHHHHHHHHHH
T ss_conf 78873589686478999999863983120200788986429887-------77-----3443058631167537885543
Q ss_pred -CCCEEEEEECCCCCCEEE----ECCEEEEEECCCCCCCCC
Q ss_conf -598587321047860687----145289997388634267
Q gi|254781225|r 583 -GGDCMTARLNYGNTYSES----PASFTPFIVPNKHLFVRN 618 (789)
Q Consensus 583 -ggD~i~ar~~~~~~~~~~----~p~~~~~~~~N~~P~~~~ 618 (789)
+.+.|..+.-= -.++.- .+=.++| -+-.|.++-
T Consensus 70 ~~~~nvvlEsrl-agW~~~~nG~yaD~~iy--L~A~levRA 107 (173)
T TIGR02173 70 EKEKNVVLESRL-AGWILKKNGEYADVKIY--LKAPLEVRA 107 (173)
T ss_pred CCCCCEEEEEHH-HHHHCCCCCCCCCEEEE--ECCCHHHHH
T ss_conf 048966885205-43311578896756788--608833324
No 180
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.49 E-value=0.33 Score=25.72 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=14.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 799997078862578999999972
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
.++.+.|+-++||||++++|..++
T Consensus 28 e~v~ivG~sGsGKSTLl~ll~gl~ 51 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999999999998999999974385
No 181
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=88.49 E-value=0.37 Score=25.41 Aligned_cols=29 Identities=38% Similarity=0.511 Sum_probs=23.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++-+.|+-|.||||++++|..++-.
T Consensus 23 ~~Ge~~~liGpNGaGKSTllk~i~Gl~~p 51 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 59989999999998699999999768788
No 182
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=88.48 E-value=0.51 Score=24.49 Aligned_cols=28 Identities=36% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.-.++-+.|+-+.||||++++|..++-.
T Consensus 33 ~Ge~v~ivG~sGsGKSTLl~ll~g~~~p 60 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999999998799999999987288
No 183
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=88.47 E-value=1.2 Score=21.98 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=51.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC--CCCCCCCHHHHHHC------CC-------CCCCCCCHHHHHHCCCEEEEEE
Q ss_conf 379999707886257899999997233--00034426764201------24-------5555689889973898099993
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN--QYVINAEASDIMQN------RP-------PEAGKANPSLIRLMGSRIVIIS 565 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~--~~~~~~~~~~~~~~------~~-------~~~~~~~~~la~l~g~r~~~~~ 565 (789)
..-+++.|+.+.||+.+...+..++.. ......+...+... .+ ...++.-.+..+-..-.+++++
T Consensus 3 ~~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~~v~~~p~~VillD 82 (168)
T pfam07724 3 IGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLID 82 (168)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEH
T ss_conf 37999889899899999999999967985344885575654256999870589987262426507899983898489865
Q ss_pred CCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCC
Q ss_conf 46777601310024541598587321047860687145289997388
Q gi|254781225|r 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 (789)
Q Consensus 566 E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~ 612 (789)
|.++-..---..|-++.-+..++ ..++.. +.|.. ..+++.||-
T Consensus 83 EIeKa~~~V~~~LL~ild~g~~~--d~~g~~-v~~~n-~i~i~Tsn~ 125 (168)
T pfam07724 83 EIEKAHPGVQNDLLQILEGGTLT--DKQGRK-VDFRN-TLFIMTGNF 125 (168)
T ss_pred HHHHHCHHHHHHHHHHCCCCCEE--CCCCCE-EECCC-EEEEECCCC
T ss_conf 77665899999999870587063--699967-84464-799976873
No 184
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.42 E-value=0.37 Score=25.42 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=16.2
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 37999970788625789999999723
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
-.++-+.|+-|+||||++++|..++-
T Consensus 32 Ge~~aiiG~NGaGKSTLl~~i~Gll~ 57 (285)
T PRK13636 32 GEVTAILGGNGAGKSTLFQNLNGILK 57 (285)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999999999809999999965988
No 185
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=88.37 E-value=0.7 Score=23.58 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=22.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+.--.+=+.|..|+||||+..+|..++-.
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 38878999889999989999999487788
No 186
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=88.36 E-value=0.38 Score=25.35 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=20.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 33799997078862578999999972330
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.-.++-+.|+-|+||||++++|..++-..
T Consensus 27 ~Gei~~liGpNGaGKSTLlk~i~Gl~~p~ 55 (257)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGELPPS 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99899999999987999999985675778
No 187
>COG3911 Predicted ATPase [General function prediction only]
Probab=88.34 E-value=0.52 Score=24.41 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 3379999707886257899999997
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
.++++|+.|..+.||||+++.|...
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 5338998379997689999999975
No 188
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=88.33 E-value=0.39 Score=25.29 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=20.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 33799997078862578999999972
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
.--++-+.|+-|.||||++++|..++
T Consensus 29 ~GE~~~iiGpNGaGKSTLlk~i~Gll 54 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99899999899960999999997567
No 189
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.33 E-value=0.38 Score=25.32 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=19.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.-.++-+.|+-|+||||++++|..++-.
T Consensus 27 ~Ge~vaiiG~nGsGKSTLl~~l~Gll~P 54 (275)
T PRK13639 27 EGEMIAILGPNGAGKSTLFLHFNGILKP 54 (275)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989999999996499999999739899
No 190
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=88.31 E-value=0.47 Score=24.75 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=5.4
Q ss_pred CHHHHH--HHHHHHHH
Q ss_conf 888999--99999862
Q gi|254781225|r 225 SHDEWI--PVVMAVHH 238 (789)
Q Consensus 225 dyd~W~--~vg~al~~ 238 (789)
+.|+.. .|..+|++
T Consensus 205 GLDSfmA~~Vv~~L~~ 220 (671)
T TIGR00955 205 GLDSFMAYSVVQVLKG 220 (671)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 3459999999999999
No 191
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=88.28 E-value=0.57 Score=24.19 Aligned_cols=32 Identities=41% Similarity=0.519 Sum_probs=26.0
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 74337999970788625789999999723300
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
......+-+.|+.|+||||++++|..++-.+.
T Consensus 338 I~~Ge~vaIVG~SGsGKSTLl~LL~g~y~p~~ 369 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE 369 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 88997899879999987999999997764267
No 192
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=88.23 E-value=0.38 Score=25.33 Aligned_cols=28 Identities=29% Similarity=0.255 Sum_probs=21.7
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.-.++-+.|+-++||||++++|..++-.
T Consensus 29 ~Ge~v~ivG~sGsGKSTLl~ll~gl~~p 56 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9989999999999899999999679718
No 193
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=88.22 E-value=0.41 Score=25.10 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=23.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
..-.++-+.|+-|+||||++++|..++-..
T Consensus 26 ~~Gei~~liGpNGaGKSTLlk~i~Gl~~p~ 55 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLTPQ 55 (255)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 899799999999981999999997598888
No 194
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=88.09 E-value=0.38 Score=25.35 Aligned_cols=14 Identities=7% Similarity=-0.126 Sum_probs=6.9
Q ss_pred EEEEECCCCCCCCC
Q ss_conf 89997388634267
Q gi|254781225|r 605 TPFIVPNKHLFVRN 618 (789)
Q Consensus 605 ~~~~~~N~~P~~~~ 618 (789)
++.+...+.|...+
T Consensus 321 ~~~~~~~~~~~~G~ 334 (352)
T PRK10851 321 TVVMHGDDAPQRGE 334 (352)
T ss_pred EEEECCCCCCCCCC
T ss_conf 99927987899999
No 195
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=88.07 E-value=0.74 Score=23.41 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=25.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 4337999970788625789999999723300
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
...+++|+-|..|+|||++.+.+..-++..+
T Consensus 10 ~~Pkai~laG~pGAGKS~~~~~~~~~~~~~~ 40 (191)
T pfam06414 10 ERPVAVLLGGQPGAGKTELARALLEELGGGN 40 (191)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 6987999957998888999999987537899
No 196
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=88.07 E-value=0.61 Score=23.95 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=31.1
Q ss_pred HHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCHHH
Q ss_conf 9759874337999970788625789999999723300-03442676
Q gi|254781225|r 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASD 537 (789)
Q Consensus 493 ~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~~~ 537 (789)
.|....+....+.|.|+=+.||+||..-+..-||-.. ++|++..+
T Consensus 7 ~ia~~l~~G~vi~L~G~LGaGKTtfvr~i~~~lg~~~~V~SPTF~l 52 (123)
T pfam02367 7 RLAQLLKAGDVVLLSGDLGAGKTTFVRGLAKGLGITGNVTSPTFTL 52 (123)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 9997689997999988877889999999999859988737995588
No 197
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=88.06 E-value=0.52 Score=24.42 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCEECHHHHHHHH
Q ss_conf 878899999999998426388887543262688411179999999
Q gi|254781225|r 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 (789)
Q Consensus 674 ~~p~~v~~a~~~y~~~~D~v~~fi~e~ce~~~~~~~~~~~l~~~y 718 (789)
..++.++.-...|...+.++-.+.. +.++. ..+..++++.+
T Consensus 133 d~~~~~~~R~~~y~~~~~pl~~~y~--~~id~--~~~i~~v~~~i 173 (178)
T COG0563 133 DNEETVKKRLKVYHEQTAPLIEYYS--VTIDG--SGEIEEVLADI 173 (178)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEE--ECCCC--CCCHHHHHHHH
T ss_conf 6789999999998754683477775--11467--78899999999
No 198
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.04 E-value=0.42 Score=25.03 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=19.3
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.-.++-+.|+-|.||||++.+|..++-.
T Consensus 33 ~Ge~vaiiG~nGsGKSTL~~~l~Gll~P 60 (283)
T PRK13640 33 RGSWTALIGHNGSGKSTISKLINGLLLP 60 (283)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999999998799999999640378
No 199
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=87.98 E-value=0.39 Score=25.25 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=14.4
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 37999970788625789999999723
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
..++-+.|+-|.||||++++|..++.
T Consensus 38 GEiv~LiG~nGaGKSTLlr~i~Gl~~ 63 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999998998889999999965898
No 200
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=87.97 E-value=1.6 Score=21.16 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 99999999999997598-74337999970788625789999999
Q gi|254781225|r 481 EVMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMNLIKY 523 (789)
Q Consensus 481 e~~~~l~~~~g~~l~g~-~~~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789)
.++.-+..++...-.|. .++..-+.+.|+.+.|||+|+|.|..
T Consensus 195 ~l~~~i~~ll~~~~~g~~l~~G~~v~i~G~PN~GKSSL~N~L~~ 238 (445)
T PRK05291 195 ELIAELEKLLASAKQGELLREGLKVVIAGRPNVGKSSLLNALLG 238 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 99999999999987417863598699889998768999999857
No 201
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.96 E-value=0.41 Score=25.09 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=14.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 7999970788625789999999723
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
-++-+.|+-|+||||++++|..++-
T Consensus 31 E~vaivG~nGsGKSTL~~~l~Gll~ 55 (276)
T PRK13650 31 EWLSIIGHNGSGKSTTVRLIDGLLE 55 (276)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8999999999879999999973889
No 202
>PRK06762 hypothetical protein; Provisional
Probab=87.93 E-value=0.64 Score=23.83 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=25.4
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 3799997078862578999999972330
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.+++++-|+.++||||+..-|+.-||..
T Consensus 2 t~LIiiRGNSgSGKtT~Ak~L~~~~G~g 29 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRG 29 (166)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 5289997888888789999999986888
No 203
>PRK10869 recombination and repair protein; Provisional
Probab=87.93 E-value=0.55 Score=24.25 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=63.2
Q ss_pred EEEECCCEEECCC----CCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 7660793797438----885589865501001378888757947899999888799999999999999997598743379
Q gi|254781225|r 428 FLGEQDGILDLET----GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF 503 (789)
Q Consensus 428 ll~~~NGv~dl~t----~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~ 503 (789)
-|+++|+.+++.- ..+.++- .|-+.... .-+|..+. +=|..|----|+-+.+..+ -.++........+
T Consensus 385 ~L~M~~a~F~i~i~~~~~~~~~~G-~d~vefl~--s~N~G~~~----~pL~kiASGGElSRimLAl-k~v~a~~~~~~tl 456 (553)
T PRK10869 385 ELSMPHGKFTIDVKFDEHHLSADG-ADRIEFRV--TTNPGQPL----QPIAKVASGGELSRIALAI-QVITARKMETPAL 456 (553)
T ss_pred CCCCCCCEEEEEEECCCCCCCCCC-CEEEEEEE--ECCCCCCC----CCHHHHCCHHHHHHHHHHH-HHHHHCCCCCCEE
T ss_conf 029997489999961766789998-63899999--52899997----6177763660899999999-9997057999828
Q ss_pred EEE---EECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEE
Q ss_conf 999---70788625789999999723300034426764201245555689889973898099993467776013100245
Q gi|254781225|r 504 IHI---RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 (789)
Q Consensus 504 ~~~---~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ 580 (789)
+|= .|.||.==..+.+.|..+=-.+-+..+ -+.|.+|......+.|.-+...+.. .+.++.
T Consensus 457 IFDEID~GigG~~a~~vg~~L~~ls~~~QVi~I--------------THlpQvAa~ad~H~~V~K~~~~~~t--~t~i~~ 520 (553)
T PRK10869 457 IFDEVDVGISGPTAAVVGKLLRQLGESTQVMCV--------------THLPQVAGCGHQHMFVSKETDGGMT--ETHMQP 520 (553)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE--------------CCHHHHHHCCCCEEEEEEECCCCEE--EEEEEE
T ss_conf 985788899879999999999998529879998--------------0369998544877899997379826--898788
Q ss_pred EECCCEE
Q ss_conf 4159858
Q gi|254781225|r 581 MTGGDCM 587 (789)
Q Consensus 581 ltggD~i 587 (789)
|++.+.+
T Consensus 521 L~~~eRv 527 (553)
T PRK10869 521 LDKKARL 527 (553)
T ss_pred CCHHHHH
T ss_conf 9840799
No 204
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=87.93 E-value=0.43 Score=24.98 Aligned_cols=27 Identities=37% Similarity=0.452 Sum_probs=18.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 379999707886257899999997233
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..++-+.|+-++||||++++|..++-.
T Consensus 30 G~~v~ivG~sGsGKSTLl~ll~gl~~p 56 (220)
T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGLYKP 56 (220)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 999999999998599999999672547
No 205
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=87.91 E-value=0.43 Score=25.00 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=20.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.-.++.+.|+-++||||++++|..++-.
T Consensus 26 ~Ge~~~IvG~sGsGKSTLl~~l~g~~~~ 53 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999999998099999998555656
No 206
>PRK07667 uridine kinase; Provisional
Probab=87.90 E-value=0.7 Score=23.56 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=24.4
Q ss_pred CCCCEEEEE-EECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 743379999-70788625789999999723300
Q gi|254781225|r 498 NKAQRFIHI-RGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 498 ~~~~~~~~~-~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
-+++.|+|- -|..++|||||.+-|...|+...
T Consensus 10 ~~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~ 42 (190)
T PRK07667 10 HKENRFILGIDGLSRSGKTTFVANLKENMKQEG 42 (190)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 759869999779897889999999999986659
No 207
>KOG0728 consensus
Probab=87.85 E-value=1.6 Score=21.12 Aligned_cols=121 Identities=18% Similarity=0.283 Sum_probs=73.2
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC---CCCHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf 74337999970788625789999999723300034426764201245555---689889973898099993467776013
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSRIVIISETNENDEIN 574 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~---~~~~~la~l~g~r~~~~~E~~~~~~~~ 574 (789)
....+=+++||+.+.||..+.....+----.. .-++.+.+-++.-...+ ..-|.+|+-..--+++++|.+. +.
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahht~c~f-irvsgselvqk~igegsrmvrelfvmarehapsiifmdeids---ig 253 (404)
T KOG0728 178 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTF-IRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDS---IG 253 (404)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHCCEEE-EEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCC---CC
T ss_conf 78876048846999756299999875414079-996449999998501389999999998750882675000012---12
Q ss_pred CCEEEEEECCCEEEEEEC----C-CCCCEEEECCEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 100245415985873210----4-786068714528999738863426798416646
Q gi|254781225|r 575 AAKIKQMTGGDCMTARLN----Y-GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 (789)
Q Consensus 575 ~~~~K~ltggD~i~ar~~----~-~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR 626 (789)
.+++-.-+|||.-.-|-+ + -+.| +...+.+++|+||. +.--|.|+.|-
T Consensus 254 s~r~e~~~ggdsevqrtmlellnqldgf-eatknikvimatnr---idild~allrp 306 (404)
T KOG0728 254 SSRVESGSGGDSEVQRTMLELLNQLDGF-EATKNIKVIMATNR---IDILDPALLRP 306 (404)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCCEEEEEECCC---CCCCCHHHCCC
T ss_conf 3434578986389999999999740240-00366269984164---22246866387
No 208
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=87.80 E-value=0.5 Score=24.57 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=17.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 79999707886257899999997
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
-..-+.|+.+.||||++|+|...
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 57999778886578899998742
No 209
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=87.77 E-value=0.41 Score=25.10 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=12.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 799997078862578999999972
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
..+-+.|+.|+||||++++|..++
T Consensus 64 e~vaIVG~sGSGKSTLl~lL~gl~ 87 (282)
T cd03291 64 EMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 999999999981999999995787
No 210
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=87.77 E-value=0.41 Score=25.10 Aligned_cols=25 Identities=44% Similarity=0.586 Sum_probs=14.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 7999970788625789999999723
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
.++-+.|+-++|||||+++|..++-
T Consensus 29 ~~vaivG~sGsGKSTll~ll~gl~~ 53 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 9999999999859999999967765
No 211
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.74 E-value=0.37 Score=25.38 Aligned_cols=25 Identities=36% Similarity=0.398 Sum_probs=14.1
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 3799997078862578999999972
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
-.++-+.|+.|+||||++++|..+.
T Consensus 31 Ge~~~ivG~SGsGKSTllr~i~gL~ 55 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999998898058999999996799
No 212
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=87.73 E-value=0.41 Score=25.12 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=5.3
Q ss_pred CCCCEEEECC
Q ss_conf 2684388047
Q gi|254781225|r 130 GCGQYFVAYN 139 (789)
Q Consensus 130 ~~G~q~V~~g 139 (789)
..|.++++-|
T Consensus 29 ~~GE~~~llG 38 (362)
T TIGR03258 29 EAGELLALIG 38 (362)
T ss_pred CCCCEEEEEC
T ss_conf 9998999999
No 213
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.69 E-value=0.45 Score=24.83 Aligned_cols=29 Identities=31% Similarity=0.411 Sum_probs=21.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++-+.|+.|+||||++++|..++-.
T Consensus 50 ~~Ge~vaIIG~nGsGKSTL~~~l~Gll~p 78 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 59989999949998499999999758889
No 214
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=87.64 E-value=1.7 Score=21.03 Aligned_cols=48 Identities=31% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99998887999999999999999975987433799997078862578999999972
Q gi|254781225|r 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 470 ~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
++++..=+-+.+..+||..++ +..+-+++.|..++||+||++.+..-+
T Consensus 126 ~dlv~~G~~~~~~a~~L~~~V--------~~r~nilI~G~TgsGKTTll~all~~i 173 (320)
T PRK13894 126 DQYVERGIMTAEQREAIIAAV--------RAHRNILVIGGTGSGKTTLVNAIINEM 173 (320)
T ss_pred HHHHHCCCCCHHHHHHHHHHH--------HCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999876999999999999999--------728758998588865689999998632
No 215
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.59 E-value=0.44 Score=24.91 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=23.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
....++-+.|+-|+||||++++|..++-.
T Consensus 35 ~~Ge~~aIiG~nGsGKSTL~~~l~Gll~p 63 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999995799999999659889
No 216
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=87.58 E-value=0.67 Score=23.68 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=24.9
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 7433799997078862578999999972330
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
...-..+-+.|+.|+||||++++|..++-..
T Consensus 364 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~p~ 394 (593)
T PRK10790 364 VPSRNFVALVGHTGSGKSTLASLLMGYYPLT 394 (593)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 4899789987999886899999999855678
No 217
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=87.58 E-value=0.41 Score=25.14 Aligned_cols=31 Identities=35% Similarity=0.431 Sum_probs=24.3
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 7433799997078862578999999972330
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
...-..+-+.|+.|+||||++++|..++-..
T Consensus 346 i~~Ge~vaiVG~SGsGKSTL~~LL~r~y~p~ 376 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ 376 (547)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 8599889998999997799999982896699
No 218
>pfam06048 DUF927 Domain of unknown function (DUF927). Family of bacterial proteins of unknown function.
Probab=87.58 E-value=1.7 Score=21.01 Aligned_cols=119 Identities=15% Similarity=0.148 Sum_probs=75.2
Q ss_pred CCCCCCCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCC-CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 88887579478999998887-9999999999999999759874-337999970788625789999999723300034426
Q gi|254781225|r 458 TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 (789)
Q Consensus 458 ~~y~~~a~~p~~~~~l~~~~-~d~e~~~~l~~~~g~~l~g~~~-~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~ 535 (789)
-.|.+.-+-..|.+-+.... ++..++-.+-..++..|..-.. +-..+-++|..+.||||.+++...+.|+....
T Consensus 146 ~~~~~~GTl~~W~~~v~~~~~gn~~~~~~v~~afa~pLl~~~~~~~~~~hl~g~Ss~GKTt~~~~AaSvwG~p~~~---- 221 (284)
T pfam06048 146 DGLSQKGTLDEWRREVAALCVGNPLLILAVSAALAAPLLKLLGLEGGGFHFVGDSSTGKTTALKLAASVWGNPDTL---- 221 (284)
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHH----
T ss_conf 2133787999999999999758989999999998999999858985599986589876689999887661482887----
Q ss_pred HHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCC-CEEEEEECC
Q ss_conf 7642012455556898899738980999934677760131-002454159
Q gi|254781225|r 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGG 584 (789)
Q Consensus 536 ~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~-~~~K~ltgg 584 (789)
..+- + .+ .+.-...|.+..-.+.+.+|..+.+.-.. ..+-+|+.|
T Consensus 222 -~~sw-~-~T-~n~le~~a~~~nd~~l~lDE~~~~~~~~~~~~~Y~l~nG 267 (284)
T pfam06048 222 -IRSW-R-ST-ANGLEATASEHNDTPLILDEISEADPREVGGAVYMLANG 267 (284)
T ss_pred -HHHH-H-HH-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf -3107-6-46-999999999847985576226678988997775234279
No 219
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=87.56 E-value=0.44 Score=24.89 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=22.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 33799997078862578999999972330
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.--++-+.|+-++||||++++|..++-..
T Consensus 25 ~Gei~~liG~nGaGKSTLl~~i~Gl~~p~ 53 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPPR 53 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99899999999985999999997798899
No 220
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.55 E-value=0.43 Score=24.99 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=23.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 337999970788625789999999723
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
.-.++.+.|+.+.||||++++|..++-
T Consensus 24 ~Ge~~~i~G~nGaGKSTLl~~l~gl~~ 50 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 997999987889998999999958847
No 221
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=87.55 E-value=1.7 Score=21.00 Aligned_cols=284 Identities=16% Similarity=0.167 Sum_probs=148.0
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC-CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC----
Q ss_conf 13788887579478999998887999999999999999975-9874337999970788625789999999723300----
Q gi|254781225|r 455 STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY---- 529 (789)
Q Consensus 455 ~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~-g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~---- 529 (789)
.+..+|.|++. .|.+=+|-|+-+...+.-+|. |....- +|+||..|.|||...+-+.+.|=..+
T Consensus 7 ~L~~dY~Pden---------~i~hRdeqI~~l~~~L~~~l~PG~~P~N--i~iYGkTGtGKT~vt~~v~~~l~~~~~~~d 75 (383)
T TIGR02928 7 LLEPDYVPDEN---------RIVHRDEQIEELAKALRPILRPGSRPSN--IFIYGKTGTGKTAVTKYVMKELEEAAEDRD 75 (383)
T ss_pred CCCCCCCCCCC---------CCCCCHHHHHHHHHHHHHHHCCCCCCCC--EEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 37757702742---------4668678999999998875067489872--588788898788999999999999862269
Q ss_pred ---CCC----------------CCHHHH----HHCCCCCCCCCC--------HHHH-HHCCCEEEEEECCCCC-CCCCCC
Q ss_conf ---034----------------426764----201245555689--------8899-7389809999346777-601310
Q gi|254781225|r 530 ---VIN----------------AEASDI----MQNRPPEAGKAN--------PSLI-RLMGSRIVIISETNEN-DEINAA 576 (789)
Q Consensus 530 ---~~~----------------~~~~~~----~~~~~~~~~~~~--------~~la-~l~g~r~~~~~E~~~~-~~~~~~ 576 (789)
++. .=...+ .+...+..|-+. ..|. ...+.-+++.+|.+.= ..-+..
T Consensus 76 ~~D~~~~~~NC~~~~T~y~~~~~L~~~ln~~~~~~~vP~tG~s~~~~~~~l~~~l~~~~~~~~~ivLDEiD~Lv~~~~d~ 155 (383)
T TIGR02928 76 VRDVSTVYINCQILDTSYQVLVELANQLNRRGSGEEVPTTGLSTSEVFRELYKELNRERGDSLIIVLDEIDKLVRKDDDD 155 (383)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCC
T ss_conf 97158999778546846999999999851577888898877878999999999983201887999862310221588888
Q ss_pred -----EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC-H----HHH
Q ss_conf -----024541598587321047860687145289997388634267984166468999658878887878-3----342
Q gi|254781225|r 577 -----KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-F----AQK 646 (789)
Q Consensus 577 -----~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~d~~-~----~~~ 646 (789)
.|-+|+ |.. .+.-.+-. .--+|-.||..=-...-|.=+-.. +.|=+-.||.=|.+ | .++
T Consensus 156 PAyS~~LY~L~-------Ra~-~~~~~~~~-~vgvIgISND~~f~~~Ld~RVkSs--L~~eei~FpPYdA~eL~~IL~~R 224 (383)
T TIGR02928 156 PAYSKLLYQLS-------RAR-ENGDLENA-KVGVIGISNDLKFRENLDPRVKSS--LCEEEIVFPPYDAEELRDILENR 224 (383)
T ss_pred HHHHHHHHHHH-------HHH-HCCCCCCC-CEEEEEEECCCHHHHHCCCCEECC--CCCCCCEECCCCHHHHHHHHHHH
T ss_conf 07878853433-------100-03577885-348999865714364457530132--48740040798869999999720
Q ss_pred H-CCCCHHHHH-------------------HHHHHHHHH----HHHCCC-CCCCCHHHHHHHHHHHHHCCHHHHHHHHH-
Q ss_conf 2-012044799-------------------999999999----998788-98878899999999998426388887543-
Q gi|254781225|r 647 L-ETKYTLEAK-------------------KWFLKGVKA----YISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDDC- 700 (789)
Q Consensus 647 ~-~~~e~~~i~-------------------~w~l~g~~~----~~~~g~-~~~~p~~v~~a~~~y~~~~D~v~~fi~e~- 700 (789)
. ...-..|++ .-||+=++. ..++|- .++ -+.|++|.+.. -|.|-+..-|.+-
T Consensus 225 ~v~~AF~dGvl~d~VI~lcAA~aAq~hGDAR~AiDLLR~AGe~A~~~g~~~Vt-~~HV~~A~e~~-PE~~r~~e~~~~Lp 302 (383)
T TIGR02928 225 AVEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVT-EDHVEEAQEKI-PEVDRVLELIRGLP 302 (383)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHC-CHHHHHHHHHHCCC
T ss_conf 31203368854622799999986206787899999999876875315763100-88899999832-22889999860798
Q ss_pred ------------EEEC--CCCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCE
Q ss_conf ------------2626--8841117999999999998504667555452568999986354233310010256765208
Q gi|254781225|r 701 ------------CDIG--ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 (789)
Q Consensus 701 ------------ce~~--~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~ 765 (789)
.... ...+..++++|+.|.+-|+.. +.-|++++.+..-|.++-+.|-+..+...++.-.+|+
T Consensus 303 ~h~k~~L~A~~~l~~~~~~~~~~~t~~vY~~Y~~~c~~~---~~dpl~~rR~~~~l~eL~~LG~~~~~~~~~G~g~G~~ 378 (383)
T TIGR02928 303 THSKLVLLAIANLAAESPEEDPFRTGEVYEVYKELCEDI---GVDPLTQRRISDLLNELDMLGLVEAEERNKGRGGGRT 378 (383)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEE
T ss_conf 679999999999985167887366127789999998762---6776614679998876766073345677426776436
No 222
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=87.54 E-value=0.43 Score=24.99 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=14.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 37999970788625789999999723
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
..++-+.|+-|.||||++++|..++-
T Consensus 34 Gei~~iiGpnGsGKSTLlk~i~Gl~~ 59 (269)
T PRK11831 34 GKITAIMGPSGIGKTTLLRLIGGQIA 59 (269)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98999993999759999999967988
No 223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=87.53 E-value=0.36 Score=25.50 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 433799997078862578999999972
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
..-.++.+.|+-+.||||++++|..++
T Consensus 25 ~~Ge~v~i~G~sGsGKSTLl~~l~Gl~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 899999999589998899999986987
No 224
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=87.50 E-value=0.46 Score=24.76 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=24.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
....++-+.|+-++||||++++|..++-.
T Consensus 23 ~~Ge~~~liG~nGsGKTTLl~~i~G~~~~ 51 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 69979999989998899999999579899
No 225
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=87.47 E-value=0.45 Score=24.86 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=28.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEE
Q ss_conf 79999707886257899999997233000344267642012455556898899738980999
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~ 563 (789)
.-++.+|.|+.|-..+-.+.+.=+. ++.-.+.. +....+.|+..+...+.
T Consensus 265 ~~vhvi~ggg~g~~~~r~L~~~g~~---v~~Gvl~~---------~D~d~~~A~~l~~~~v~ 314 (409)
T PRK09536 265 TSVHVVGGGQPAAPAVSRLVSAGAS---VSVGPVPA---------GDTAAETARRVGCEAVT 314 (409)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC---EEEECCCC---------CCCHHHHHHHCCCCEEE
T ss_conf 6299988997369999999987981---69842767---------65248999971985785
No 226
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.46 E-value=0.43 Score=24.98 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=16.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 337999970788625789999999723
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
...++-+.|+-|.||||++++|..++-
T Consensus 29 ~Ge~~aliG~NGaGKSTLl~~i~Gll~ 55 (277)
T PRK13652 29 RKQRIAVIGPNGAGKSTLFKHFNGILK 55 (277)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998999999999479999999966999
No 227
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=87.39 E-value=1 Score=22.55 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=10.6
Q ss_pred EEEEEEE-CCCCCHHHHH
Q ss_conf 7999970-7886257899
Q gi|254781225|r 502 RFIHIRG-VGGSGKSTLM 518 (789)
Q Consensus 502 ~~~~~~G-~G~nGKSt~~ 518 (789)
-+.|.+| +||---||.+
T Consensus 243 ~lTIaIGCTGGqHRSV~i 260 (286)
T COG1660 243 YLTIAIGCTGGQHRSVYI 260 (286)
T ss_pred EEEEEECCCCCCCCHHHH
T ss_conf 999997147986205899
No 228
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=87.34 E-value=0.64 Score=23.82 Aligned_cols=82 Identities=17% Similarity=0.256 Sum_probs=48.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEE
Q ss_conf 43379999707886257899999997233000344267642012455556898899738980999934677760131002
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~ 578 (789)
..++.+||+|..|.||||.++-|-.++-. ..+++. ..+. ..+ ..-....|+-+ |+ ++-++
T Consensus 363 ~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~--~~gl~l---~~~~-----~vn------dd~~v~LaAPT--Gr--AAkRl 422 (769)
T TIGR01448 363 IQDKVVILTGGPGTGKTTITKAIIELYEE--LKGLDL---DKDD-----YVN------DDLPVVLAAPT--GR--AAKRL 422 (769)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHHHHH--HCCCCC---CCCC-----CCC------CCCEEEEECCC--HH--HHHHC
T ss_conf 60948998577888616899999999987--168775---5312-----456------77648873774--37--88851
Q ss_pred EEEECCCEEEEEECCCCCCEEE
Q ss_conf 4541598587321047860687
Q gi|254781225|r 579 KQMTGGDCMTARLNYGNTYSES 600 (789)
Q Consensus 579 K~ltggD~i~ar~~~~~~~~~~ 600 (789)
.++||-...|.=++-+..+-++
T Consensus 423 ~E~TG~~a~TIHRLlG~~~~~~ 444 (769)
T TIGR01448 423 AEVTGLEALTIHRLLGYGSDTK 444 (769)
T ss_pred CCCCCCHHHHHHHHHCCCCCCC
T ss_conf 1002621234778636898887
No 229
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=87.31 E-value=0.47 Score=24.73 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHH
Q ss_conf 947899999888
Q gi|254781225|r 465 PSQEFLDLVSGY 476 (789)
Q Consensus 465 ~~p~~~~~l~~~ 476 (789)
..|+..+||.++
T Consensus 228 ~~~R~~~FL~~i 239 (240)
T COG1126 228 KSERTRQFLSKI 239 (240)
T ss_pred CCHHHHHHHHHH
T ss_conf 998999999851
No 230
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=87.31 E-value=0.49 Score=24.59 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=22.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 33799997078862578999999972330
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.-.|.-++|+-+.|||||+.+|..++-.+
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~ 57 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPS 57 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 89689999998888899999996787677
No 231
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=87.21 E-value=0.48 Score=24.65 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=15.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 3799997078862578999999972
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
--++-+.|+-|+||||++++|..+.
T Consensus 31 Gei~~iiG~sGsGKSTLl~~i~gl~ 55 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9799999899981999999996599
No 232
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=87.20 E-value=0.45 Score=24.81 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=22.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..-.++-+.|+-|.||||++++|..++-.
T Consensus 31 ~~Ge~~~iiGpNGaGKSTLlk~i~Gll~p 59 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMTP 59 (265)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 59979999999883999999999749888
No 233
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.19 E-value=0.71 Score=23.54 Aligned_cols=27 Identities=37% Similarity=0.374 Sum_probs=23.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 799997078862578999999972330
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
+++++.|+.|.||+|+++.|..-..+.
T Consensus 2 ~livl~GpsG~GK~tl~~~l~~~~~~~ 28 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 399998999889999999999768994
No 234
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=87.18 E-value=0.49 Score=24.58 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=22.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.-.++-+.|+-|.||||++++|..++-.
T Consensus 29 ~Gei~~LiGpNGaGKSTLlk~I~Gl~~p 56 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLVAP 56 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9979999989998899999999668889
No 235
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=87.16 E-value=0.51 Score=24.48 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=19.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
...++-+.|+-|+||||++++|..++..
T Consensus 36 ~Ge~~~liG~NGaGKSTLl~~l~gl~~p 63 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPP 63 (265)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9989999999998099999999568899
No 236
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=87.16 E-value=0.5 Score=24.55 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=9.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9999707886257899999997
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~l 524 (789)
++-+.|+-|+||||++++|..+
T Consensus 29 ~~aliG~sGsGKSTLl~~l~gl 50 (248)
T PRK11264 29 VVAIIGPSGSGKTTLLRCINLL 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998099999999758
No 237
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=87.15 E-value=0.47 Score=24.71 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=20.2
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 337999970788625789999999723
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
.-.++-+.|+-|+||||++++|..++.
T Consensus 26 ~Ge~~aliG~nGaGKSTLl~~i~G~l~ 52 (273)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKVLAGELT 52 (273)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998999999999769999999956788
No 238
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=87.14 E-value=0.57 Score=24.17 Aligned_cols=14 Identities=50% Similarity=0.601 Sum_probs=4.5
Q ss_pred ECCCCCHHHHHHHH
Q ss_conf 07886257899999
Q gi|254781225|r 508 GVGGSGKSTLMNLI 521 (789)
Q Consensus 508 G~G~nGKSt~~~~l 521 (789)
|+-+.|||||+++|
T Consensus 54 G~sGsGKSTL~~ll 67 (257)
T cd03288 54 GRTGSGKSSLSLAF 67 (257)
T ss_pred CCCCCCHHHHHHHH
T ss_conf 99998199999999
No 239
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=87.11 E-value=0.46 Score=24.77 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=4.9
Q ss_pred CCCCEEEECC
Q ss_conf 2684388047
Q gi|254781225|r 130 GCGQYFVAYN 139 (789)
Q Consensus 130 ~~G~q~V~~g 139 (789)
..|..+++-|
T Consensus 28 ~~Ge~~~llG 37 (358)
T PRK11650 28 ADGEFIVLVG 37 (358)
T ss_pred CCCCEEEEEC
T ss_conf 8998999999
No 240
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.10 E-value=1.8 Score=20.84 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=92.5
Q ss_pred CCCHHHHCCEECCCCCCCCCC-----HHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCCC---CCEEEEEEECCCCCHH
Q ss_conf 898655010013788887579-----4789999988-879999999999999999759874---3379999707886257
Q gi|254781225|r 445 KPTKELYITKSTGTPFVEGEP-----SQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGNK---AQRFIHIRGVGGSGKS 515 (789)
Q Consensus 445 ~~~~~~~~t~~~~~~y~~~a~-----~p~~~~~l~~-~~~d~e~~~~l~~~~g~~l~g~~~---~~~~~~~~G~G~nGKS 515 (789)
+.+-...++..++++-..-.. --..++.|.+ ++|-++.++-+-..+--+-.|-.. .---|++.||.|-||+
T Consensus 474 ~~dI~~vvs~~tgiPv~~~~~~e~~~l~~le~~L~~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKT 553 (823)
T CHL00095 474 EKDIAEIVSAWTGIPVNKLTKSESEKLIHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKT 553 (823)
T ss_pred HHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHH
T ss_conf 99999999998689847633458899987888787784076999999999999997089989997468998789988779
Q ss_pred HHHHHHHHH-HCCCC-CCCCCHHHHHHCC-------------CCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEE
Q ss_conf 899999997-23300-0344267642012-------------45555689889973898099993467776013100245
Q gi|254781225|r 516 TLMNLIKYA-FGNQY-VINAEASDIMQNR-------------PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 (789)
Q Consensus 516 t~~~~l~~l-lG~~~-~~~~~~~~~~~~~-------------~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ 580 (789)
-+...|... ||+.. ..-.+.+.....- |-..|+--.+-.+-+.--++..+|.++-..---..|-|
T Consensus 554 ElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLIGaPPGYVGy~eGG~LTeaVrr~PysVvLfDEIEKAHpdV~nilLQ 633 (823)
T CHL00095 554 ELTKALASYFFGSEEAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQ 633 (823)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHH
T ss_conf 99999999974782025885351015542076745899876677878820198871998699862131138899998876
Q ss_pred EECCCEEEEEECCCCCCEEEECCEEEEEECCC
Q ss_conf 41598587321047860687145289997388
Q gi|254781225|r 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 (789)
Q Consensus 581 ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~ 612 (789)
+.....++-. .++. +.|+.+ .++|.||-
T Consensus 634 vlDdG~LtD~--~Gr~-vdF~Nt-IIImTSNl 661 (823)
T CHL00095 634 ILDDGRLTDS--KGRT-IDFKNT-LIIMTSNL 661 (823)
T ss_pred HCCCCCCCCC--CCCE-EECEEE-EEEECCCC
T ss_conf 5168843489--9998-843103-99971650
No 241
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.03 E-value=0.49 Score=24.59 Aligned_cols=27 Identities=41% Similarity=0.556 Sum_probs=18.5
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 379999707886257899999997233
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
-.++-+.|+-|+||||++.+|..++..
T Consensus 33 Ge~~aiiG~sGsGKSTL~~~l~Gl~~~ 59 (277)
T PRK13642 33 GEWVSIIGQNGSGKSTTARLIDGLFEE 59 (277)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 989999999996899999999638998
No 242
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=86.99 E-value=0.68 Score=23.64 Aligned_cols=30 Identities=43% Similarity=0.633 Sum_probs=24.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.....+-+.|+.|+||||++++|..++-.+
T Consensus 359 ~~Ge~vaiVG~SGsGKSTL~~LL~gly~p~ 388 (585)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLHRVFDPQ 388 (585)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 599889998898986999999986015788
No 243
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=86.96 E-value=0.67 Score=23.72 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=21.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 79999707886257899999997233
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+++++.||.|.||||+++-|..-...
T Consensus 3 ~LivvsgPSGaGK~Tli~~l~~~~~~ 28 (184)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQT 28 (184)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 09999899869999999999844899
No 244
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=86.96 E-value=0.52 Score=24.44 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=16.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 3799997078862578999999972
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
-.++-+.|+-|+||||++++|..+.
T Consensus 28 Ge~~~iiG~nGaGKSTLl~~l~gl~ 52 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899999999971999999996588
No 245
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=86.92 E-value=0.44 Score=24.93 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=20.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 33799997078862578999999972
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
.-.++-+.|+-|.||||++++|..++
T Consensus 30 ~Ge~~~IvG~sGsGKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99899999999985899999981895
No 246
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=86.90 E-value=0.4 Score=25.18 Aligned_cols=28 Identities=36% Similarity=0.440 Sum_probs=22.3
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7433799997078862578999999972
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
...-.++.+.|+-++||||++++|..++
T Consensus 32 v~~Gei~~ilGpnGaGKSTLl~~l~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EECCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9088199999899951999999985777
No 247
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=86.90 E-value=0.5 Score=24.57 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=23.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
....+.-+.|+-|.||||+++.|..++-..
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~~~l~p~ 55 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPK 55 (258)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 599799998998889999999986567888
No 248
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=86.89 E-value=0.7 Score=23.59 Aligned_cols=56 Identities=23% Similarity=0.427 Sum_probs=36.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 7999970788625789999999723300034426764201245555689889973898099993467
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~ 568 (789)
+++++.|+.+.||+|+++.|..-+++....+.+- ++ |.+..+ ...|.-..++++..
T Consensus 2 klivl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~--TT--R~~R~~-------E~~G~dY~Fvs~~~ 57 (182)
T pfam00625 2 RPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSH--TT--RPPRPG-------EVDGKDYHFVSKEE 57 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEE--EC--CCCCCC-------CCCCCEEEEECHHH
T ss_conf 8699989899999999999998486673445765--54--799987-------87896579965899
No 249
>PRK13768 GTPase; Provisional
Probab=86.89 E-value=0.75 Score=23.37 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=14.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 999970788625789999999723
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
..+..|+.|+|||||...+..-+-
T Consensus 4 ~~~ViGpaGSGKsT~~~~l~~~l~ 27 (253)
T PRK13768 4 IVFFLGTAGSGKTTLVGALSDWLE 27 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989999988999999999999
No 250
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=86.81 E-value=0.64 Score=23.82 Aligned_cols=30 Identities=37% Similarity=0.480 Sum_probs=24.3
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
+.--++|++|.-++|||||+.++..+.-..
T Consensus 347 krGelvFliG~NGsGKST~~~LLtGL~~Pq 376 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLAMLLTGLYQPQ 376 (546)
T ss_pred ECCCEEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 337389998889963889999997066888
No 251
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=86.76 E-value=0.65 Score=23.79 Aligned_cols=31 Identities=32% Similarity=0.452 Sum_probs=25.1
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 7433799997078862578999999972330
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
......+-+.|+.|+||||++++|..++-.+
T Consensus 365 I~~G~~vaiVG~SGsGKSTL~~LL~gly~p~ 395 (581)
T PRK11176 365 IPAGKTVALVGRSGSGKSTIANLLTRFYDID 395 (581)
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 7999443122899986789999998536678
No 252
>PRK02224 chromosome segregation protein; Provisional
Probab=86.75 E-value=1.1 Score=22.26 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=6.1
Q ss_pred HCCEEEEECCC
Q ss_conf 07889992347
Q gi|254781225|r 51 ACGFGFVCGVG 61 (789)
Q Consensus 51 ~~giGi~~G~~ 61 (789)
..||=+++|++
T Consensus 22 ~~Gi~~I~G~N 32 (880)
T PRK02224 22 EDGVTVIHGLN 32 (880)
T ss_pred CCCEEEEECCC
T ss_conf 99858998999
No 253
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=86.75 E-value=0.52 Score=24.41 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=21.4
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 33799997078862578999999972330
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.--++-+.|+-++||||++++|..++...
T Consensus 28 ~Gei~~liGpNGaGKSTLl~~i~Gl~~~~ 56 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRD 56 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99799998899986999999996788888
No 254
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=86.70 E-value=0.57 Score=24.17 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=15.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 79999707886257899999997233
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.++-+.|+-|+||||++++|..++-.
T Consensus 28 ei~~liGpNGaGKSTLlk~l~Gl~~p 53 (271)
T PRK13638 28 PVTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 79999999998099999999668888
No 255
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=86.68 E-value=1.5 Score=21.34 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=46.1
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC--CCCCHHHHHHCCCEEEEEECCCC
Q ss_conf 7433799997078862578999999972330003442676420124555--56898899738980999934677
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA--GKANPSLIRLMGSRIVIISETNE 569 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~--~~~~~~la~l~g~r~~~~~E~~~ 569 (789)
.+..+.++++|+-++||+.+...+..-++-...+.....++++--+... -..-+..|+..-...++++|.+.
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iifiDEiDs 346 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHH
T ss_conf 98883699988999758999999875449824884335554077659999999999999966998897488666
No 256
>pfam08419 consensus
Probab=86.65 E-value=1.3 Score=21.79 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEEC-CCCCHHHHHHHHHH
Q ss_conf 999999999997598743379999707-88625789999999
Q gi|254781225|r 483 MDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKY 523 (789)
Q Consensus 483 ~~~l~~~~g~~l~g~~~~~~~~~~~G~-G~nGKSt~~~~l~~ 523 (789)
..+-.++.. .|........++..||+ |+.|||||..-|..
T Consensus 57 k~WQ~~l~~-~l~~~PddRtI~Wvygp~GgeGKStfak~L~~ 97 (116)
T pfam08419 57 RPWQDEVES-LLEEEPDDRTIIWVYGPNGGEGKSTFAKHLGL 97 (116)
T ss_pred CHHHHHHHH-HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 169999999-98369987469999858998664288886420
No 257
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=86.63 E-value=0.54 Score=24.31 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 743379999707886257899999997233
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
...--++-+.|+-+.||||++++|..++-.
T Consensus 44 i~~Gei~gLlGpNGaGKSTllk~l~Gl~~p 73 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLLQP 73 (236)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 848959999999983099999999649488
No 258
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=86.59 E-value=0.52 Score=24.42 Aligned_cols=29 Identities=38% Similarity=0.509 Sum_probs=22.8
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..--++-+.|+-|+||||++++|..++-.
T Consensus 48 ~~GEivgllG~NGaGKSTLlk~I~Gl~~P 76 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLSP 76 (264)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 59989999989986199999999679888
No 259
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=86.58 E-value=0.53 Score=24.38 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=24.1
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 874337999970788625789999999723
Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
....--++-+.|+-+.||||++++|..++-
T Consensus 21 ~v~~GEiv~ilGpNGaGKSTllk~i~G~l~ 50 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 558998999989999999999999968867
No 260
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=86.58 E-value=0.67 Score=23.68 Aligned_cols=25 Identities=36% Similarity=0.680 Sum_probs=20.2
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 3799997078862578999999972
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
.-+..+.|+-|.||||+++.|...+
T Consensus 22 ~~itaivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 22 SPLTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 8889999899999999999986304
No 261
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=86.55 E-value=0.73 Score=23.45 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=22.2
Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 987433799997078862578999999972
Q gi|254781225|r 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 496 g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
-.....+..-++||.|.|||||+..+-.|.
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred EECCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 214578069988898867888999987541
No 262
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.55 E-value=1.9 Score=20.64 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=63.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC--CCCCCHHHHHHCCCC
Q ss_conf 789999988879999999999999999759874337999970788625789999999723300--034426764201245
Q gi|254781225|r 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY--VINAEASDIMQNRPP 544 (789)
Q Consensus 467 p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~--~~~~~~~~~~~~~~~ 544 (789)
+.|+.|+.. ++.++..-++..+ .+ ....++++||+.|.|||-+++.+++-+...+ +.-++...... .
T Consensus 19 ~tfdnFi~g--~n~~~~~al~~~~----~~--~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~~~~-~-- 87 (235)
T PRK08084 19 ETFASFYPG--DNDSLLAALQNVL----RQ--EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDKRAW-F-- 87 (235)
T ss_pred CCHHCCCCC--CCHHHHHHHHHHH----HC--CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHH-H--
T ss_conf 663023448--8699999999998----57--89876999899998889999999999970798579987798665-1--
Q ss_pred CCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECC--EEEEEECCCCCCCCC-CCC
Q ss_conf 55568988997389809999346777601310024541598587321047860687145--289997388634267-984
Q gi|254781225|r 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS--FTPFIVPNKHLFVRN-PDD 621 (789)
Q Consensus 545 ~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~--~~~~~~~N~~P~~~~-~d~ 621 (789)
.+..+..+...-++.+++.+. +.|. .-.-+.+| .-|....-. ..++++++..|.--+ ...
T Consensus 88 ----~~~~l~~l~~~dll~iDDi~~-----------i~g~-~~~ee~lF-~l~N~~~~~g~~~ll~ts~~~P~~l~~~l~ 150 (235)
T PRK08084 88 ----VPEVLEGMEQLSLVCIDNIEC-----------IAGD-ELWEMAIF-DLYNRILESGKTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred ----HHHHHHHHHHCCEEEEECHHH-----------HCCC-HHHHHHHH-HHHHHHHHHCCCEEEEECCCCHHHCCCCCH
T ss_conf ----799998764189899827455-----------4699-78999999-999999984896699967988243023128
Q ss_pred CEEEEE
Q ss_conf 166468
Q gi|254781225|r 622 AWWRRY 627 (789)
Q Consensus 622 ~~~rR~ 627 (789)
-+-.|+
T Consensus 151 DL~SRl 156 (235)
T PRK08084 151 DLASRL 156 (235)
T ss_pred HHHHHH
T ss_conf 899999
No 263
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=86.55 E-value=0.56 Score=24.21 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=19.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.--++-+.|+-++||||++++|..++-.
T Consensus 47 ~GeivgilG~NGaGKSTLl~~i~Gl~~p 74 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8989999979998199999999758777
No 264
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=86.53 E-value=0.54 Score=24.30 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=19.4
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.--++-+.|+-++||||++++|..++-.
T Consensus 27 ~Gei~~liGpNGaGKSTLl~~i~Gl~~p 54 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKTRP 54 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9989999989997599999999679578
No 265
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=86.42 E-value=0.78 Score=23.28 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 9999707886257899999997233
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
=+-+.|+.|.||||++.+|..++-.
T Consensus 389 r~Ai~G~SG~GKsTLL~~L~G~l~P 413 (566)
T TIGR02868 389 RVAILGPSGSGKSTLLATLAGLLDP 413 (566)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 0898668876578999999840289
No 266
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=86.41 E-value=0.55 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=19.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.--++-+.|+-++||||++++|..++-.
T Consensus 30 ~Gei~~liG~NGaGKSTLl~~i~G~~~~ 57 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGDPRA 57 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9979999879997599999999679988
No 267
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=86.36 E-value=0.59 Score=24.08 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=40.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC--C------CHHHHHHCCCCCCCCCCHHHHHH--CCCEEEEEECCC
Q ss_conf 4337999970788625789999999723300034--4------26764201245555689889973--898099993467
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN--A------EASDIMQNRPPEAGKANPSLIRL--MGSRIVIISETN 568 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~--~------~~~~~~~~~~~~~~~~~~~la~l--~g~r~~~~~E~~ 568 (789)
.....+.++|+-+.|||||+++|..++....... . -...+++. -..+-.+|+. ....+.+.+||.
T Consensus 24 ~~ge~~~l~G~NGsGKTTl~~~l~G~~~~~~G~i~~~~~~~i~y~~QLSgG-----qkqr~~la~al~~~p~iliLDEPt 98 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGG-----EKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCEEEEEHHCCHH-----HHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 799999999899984999999984898898509999996089987007999-----999999999972599899995775
Q ss_pred CC
Q ss_conf 77
Q gi|254781225|r 569 EN 570 (789)
Q Consensus 569 ~~ 570 (789)
.+
T Consensus 99 ~~ 100 (144)
T cd03221 99 NH 100 (144)
T ss_pred CC
T ss_conf 55
No 268
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA; InterPro: IPR005895 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the cytochrome c biogenesis protein encoded by ccmA in bacteria and one arabidopsis protein, possibly encoded by an organelle. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The post-translational pathway includes the transport of a heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which functions as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.; GO: 0005215 transporter activity, 0017004 cytochrome complex assembly, 0030288 outer membrane-bounded periplasmic space.
Probab=86.35 E-value=0.69 Score=23.59 Aligned_cols=11 Identities=0% Similarity=-0.169 Sum_probs=5.0
Q ss_pred HHHHHHHHHHC
Q ss_conf 68999999740
Q gi|254781225|r 245 KGKEIARRWSK 255 (789)
Q Consensus 245 ~~l~lw~~wS~ 255 (789)
|=|.+|..+..
T Consensus 92 ENL~F~~~~~~ 102 (204)
T TIGR01189 92 ENLQFWAAIHG 102 (204)
T ss_pred HHHHHHHHHHH
T ss_conf 87999999852
No 269
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=86.34 E-value=0.59 Score=24.08 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=10.5
Q ss_pred CCCCCEEEEEEECCCCCHHHH-HHHHHHHH
Q ss_conf 874337999970788625789-99999972
Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTL-MNLIKYAF 525 (789)
Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~-~~~l~~ll 525 (789)
+++-++++.++-|.+.|=+-+ +.+|+.|-
T Consensus 112 D~RVH~cLYFI~Ptgh~L~~lDi~~mk~Ls 141 (276)
T cd01850 112 DTRVHACLYFIEPTGHGLKPLDIEFMKRLS 141 (276)
T ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf 774489999967888888799999999962
No 270
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.30 E-value=0.56 Score=24.20 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=20.6
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 74337999970788625789999999
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKY 523 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789)
...-.++-+.|+-+.||||++++|..
T Consensus 30 i~~Ge~~~llGpnGaGKSTLl~~l~g 55 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 92883999999999988999999837
No 271
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.30 E-value=0.58 Score=24.13 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=22.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
...-++-+.|+-++||||++++|..+.-.
T Consensus 24 ~~Gei~~iiGpnGaGKSTl~~~i~Gl~~p 52 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 89989999999997399999999759998
No 272
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=86.29 E-value=1 Score=22.43 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 43379999707886257899999997
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
..+.+++++|+-..||||++..+.-+
T Consensus 28 ~~~~i~iiTGpN~sGKSt~lk~i~l~ 53 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98259999899988718999999999
No 273
>PRK06851 hypothetical protein; Provisional
Probab=86.27 E-value=1.6 Score=21.12 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=29.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99998887999999999999999975987433799997078862578999999972
Q gi|254781225|r 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 470 ~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
..|+..+.|+-. +.|+..+ +. .-...+++.|.-++||||+++.|....
T Consensus 192 hlF~~A~TP~G~-v~~i~~l-----~~--~~~~~y~ikG~pGtGKstlL~~i~~~A 239 (368)
T PRK06851 192 HLFLGAITPKGA-VDHVPSL-----TE--GVKNRYFLKGRPGTGKSTMLKKVAKAA 239 (368)
T ss_pred EEECCCCCCCCH-HHHHHHH-----HH--CCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 132235799964-5147878-----60--678699981899987799999999999
No 274
>PRK13542 consensus
Probab=86.20 E-value=0.58 Score=24.12 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=19.0
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 379999707886257899999997233
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
--++-+.|+-|.|||||+++|..++-.
T Consensus 44 Gei~~liGpNGaGKTTLlk~l~Gll~p 70 (224)
T PRK13542 44 GDLLQVMGPNGSGKTSLLRVLSGLMPP 70 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 979999999999999999999579788
No 275
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.20 E-value=0.69 Score=23.63 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=23.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
..-.++-+.|+-++||||++++|..++-..
T Consensus 24 ~~Gei~gllG~NGaGKTTll~~i~Gl~~p~ 53 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPD 53 (210)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 799599999899984999999996002668
No 276
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=86.16 E-value=2 Score=20.51 Aligned_cols=152 Identities=16% Similarity=0.250 Sum_probs=88.4
Q ss_pred CHHHHCCEECCCCCCCC-----CCHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCC---CCCEEEEEEECCCCCHHHH
Q ss_conf 86550100137888875-----794789999988-87999999999999999975987---4337999970788625789
Q gi|254781225|r 447 TKELYITKSTGTPFVEG-----EPSQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTL 517 (789)
Q Consensus 447 ~~~~~~t~~~~~~y~~~-----a~~p~~~~~l~~-~~~d~e~~~~l~~~~g~~l~g~~---~~~~~~~~~G~G~nGKSt~ 517 (789)
+-+..+...+.++-..- ..--..++.|.+ ++|.++.++-+-+.+-.+-.|-. +.---|++.||.|-||+-+
T Consensus 425 di~~vv~~~t~ip~~~~~~~~~~~l~~le~~l~~~viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTEl 504 (758)
T PRK11034 425 DIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEV 504 (758)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHH
T ss_conf 99999987503607677677999999899998778745499999999999998638889999705899978998777999
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCC----------------------EEEEEECCCCCCCCCC
Q ss_conf 999999723300034426764201245555689889973898----------------------0999934677760131
Q gi|254781225|r 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS----------------------RIVIISETNENDEINA 575 (789)
Q Consensus 518 ~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~----------------------r~~~~~E~~~~~~~~~ 575 (789)
...|...|+.. ..-.+.+.... ...+++|.|+ -++..+|.++-..---
T Consensus 505 ak~LA~~L~~~-lir~DMSEy~e---------~hsvsrLiGaPPGYVGy~eGG~Lte~Vr~~PysVvL~DEIEKAhpdV~ 574 (758)
T PRK11034 505 TVQLSKALGIE-LLRFDMSEYME---------RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVF 574 (758)
T ss_pred HHHHHHHHHHH-HHCCCHHHHCC---------HHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEHHHHHHCHHHH
T ss_conf 99999998667-72142665312---------014777448998666767777012878739877997336756398999
Q ss_pred CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCC
Q ss_conf 0024541598587321047860687145289997388
Q gi|254781225|r 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 (789)
Q Consensus 576 ~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~ 612 (789)
..|-|+.....++- -.++. +.|+.+ .++|.+|-
T Consensus 575 nilLQvlD~G~LtD--~~Gr~-vdF~Nt-iIImTSN~ 607 (758)
T PRK11034 575 NLLLQVMDNGTLTD--NNGRK-ADFRNV-VLVMTTNA 607 (758)
T ss_pred HHHHHHCCCCCCCC--CCCCE-EECEEE-EEEEECCC
T ss_conf 98873237783017--99998-844001-99982561
No 277
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=86.14 E-value=1.3 Score=21.80 Aligned_cols=65 Identities=18% Similarity=0.133 Sum_probs=38.1
Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 7598743379999707886257899999997233000-34426764201245555689889973898099993467
Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 (789)
Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~ 568 (789)
||=..+.-.-.-+.||-|+||||.+-+|+++.-.... ..++..-+.+ .|=-.|.-+-..+.+||-
T Consensus 552 LtFt~~PG~vvALVGPsGsGKStvaaLL~n~Y~Pt~G~vLlDg~Pl~~----------y~H~YLH~~V~~VgQEPv 617 (770)
T TIGR00958 552 LTFTLEPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLSQ----------YDHHYLHRQVALVGQEPV 617 (770)
T ss_pred CCEEECCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHH----------HCCEECCCEEEEEECCCE
T ss_conf 743653862599865899839999999985578986568776846133----------265010002543320543
No 278
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=86.14 E-value=0.99 Score=22.58 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=19.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 337999970788625789999999
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKY 523 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789)
.+.+++++|+-..|||||++.+.-
T Consensus 27 ~~~~~iiTGpN~sGKSt~lk~i~l 50 (200)
T cd03280 27 NKRVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 933999988987750999999999
No 279
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=86.02 E-value=0.68 Score=23.65 Aligned_cols=26 Identities=38% Similarity=0.379 Sum_probs=20.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 43379999707886257899999997
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
..-.++-+.|+-++||||++++|..+
T Consensus 24 ~~Gei~~iiGpnGaGKSTLl~~i~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 79989999968999999999997077
No 280
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=86.01 E-value=0.56 Score=24.24 Aligned_cols=10 Identities=10% Similarity=0.076 Sum_probs=4.8
Q ss_pred CCCCEEEECC
Q ss_conf 2684388047
Q gi|254781225|r 130 GCGQYFVAYN 139 (789)
Q Consensus 130 ~~G~q~V~~g 139 (789)
..|..+++-|
T Consensus 30 ~~Ge~~~llG 39 (351)
T PRK11432 30 KQGTMVTLLG 39 (351)
T ss_pred CCCCEEEEEC
T ss_conf 8998999999
No 281
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=86.01 E-value=0.66 Score=23.74 Aligned_cols=30 Identities=40% Similarity=0.554 Sum_probs=24.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
..-..+-+.|+.|.||||++++|...+-.+
T Consensus 365 ~~Ge~vaiVG~SGsGKSTL~~LL~r~ydp~ 394 (575)
T PRK11160 365 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQ 394 (575)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 699889998899975999999986236789
No 282
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=85.97 E-value=1 Score=22.55 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=23.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 9997078862578999999972330003
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~~ 531 (789)
.+++|+.|.|||||+++|..-+..|...
T Consensus 491 TlIiGpTGaGKTvll~fL~aQ~~rY~~~ 518 (852)
T PRK13891 491 TFMFGPTGAGKSTHLGIIAAQLRRYAGM 518 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 0787899998899999999997441898
No 283
>PRK05416 hypothetical protein; Provisional
Probab=85.97 E-value=1.2 Score=22.07 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCHHHHH---HHHHHHHHHHCCCCCCCE--EEEEEE-CCCCCHHHH-HHHHHHHHCC
Q ss_conf 789999988879999999---999999999759874337--999970-788625789-9999997233
Q gi|254781225|r 467 QEFLDLVSGYFESEEVMD---YFTRCVGMALLGGNKAQR--FIHIRG-VGGSGKSTL-MNLIKYAFGN 527 (789)
Q Consensus 467 p~~~~~l~~~~~d~e~~~---~l~~~~g~~l~g~~~~~~--~~~~~G-~G~nGKSt~-~~~l~~llG~ 527 (789)
+...+|+.+ +++..+ .+..++.+.|-.-..+.+ +.|-+| +||-=-||+ .+.+..-|.+
T Consensus 211 ~~V~~yv~~---~~~~~~f~~~i~~~l~~~lp~y~~egk~yltIaiGCTGG~HRSV~~ae~l~~~l~~ 275 (292)
T PRK05416 211 KPVADYVLA---QPEVEEFLDQIRDLLEFWLPGYRREGKSYLTIAIGCTGGQHRSVAIAERLAERLRA 275 (292)
T ss_pred HHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 589999974---92299999999999999999999849977999975889871799999999999857
No 284
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=85.97 E-value=2.1 Score=20.45 Aligned_cols=207 Identities=17% Similarity=0.198 Sum_probs=106.5
Q ss_pred HCCEECCCCCCCCCC----HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 010013788887579----47899999888-7999999999999999975987433799997078862578999999972
Q gi|254781225|r 451 YITKSTGTPFVEGEP----SQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 451 ~~t~~~~~~y~~~a~----~p~~~~~l~~~-~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
|+-+.+..+|..... ...-.+-|++= +|=+.+.+.+.++++-.-......--.+-|+|+.|-||+.+..-|...|
T Consensus 294 YLd~l~~LPW~~~t~d~~dl~~A~~iLd~dHyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al 373 (784)
T PRK10787 294 YIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999759988887875699999998765430657799999999999986246778779964699877246999999985
Q ss_pred CCCCC-CCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCC----------------CEEEEEECCCEEE
Q ss_conf 33000-344267642012455556898899738980999934677760131----------------0024541598587
Q gi|254781225|r 526 GNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA----------------AKIKQMTGGDCMT 588 (789)
Q Consensus 526 G~~~~-~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~----------------~~~K~ltggD~i~ 588 (789)
|..++ .++- +. -+-|.++|-|-.++.-.+ |+.+.. .++=+=.-||+-.
T Consensus 374 ~r~f~rislG-------------Gv-~DeaeirGHrrTYvgamp-Grii~~l~~a~~~nPv~llDEiDK~~~~~~Gdp~s 438 (784)
T PRK10787 374 GRKYVRMALG-------------GV-RDEAEIRGHRRTYIGSMP-GKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPAS 438 (784)
T ss_pred CCCEEEEECC-------------CC-CCHHHHCCCCCCCCCCCC-HHHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCHHH
T ss_conf 8986998068-------------87-888882564334344368-38999999748988566500355522455899889
Q ss_pred E---------EECCCCCCE--EEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHH-
Q ss_conf 3---------210478606--8714528999738863426798416646899965887888787833422012044799-
Q gi|254781225|r 589 A---------RLNYGNTYS--ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK- 656 (789)
Q Consensus 589 a---------r~~~~~~~~--~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i~- 656 (789)
| ..-|.+.|. .|.....+|++|-+-- +-...+..||-+|.+..-.. .|+..|.
T Consensus 439 alLEvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~~---~ip~pLlDRmE~i~~~gYt~------------~eK~~Ia~ 503 (784)
T PRK10787 439 ALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM---NIPAPLLDRMEVIRLSGYTE------------DEKLNIAK 503 (784)
T ss_pred HHHHHCCHHHCCCCCCCEEECCCCHHHEEEEEECCCC---CCCHHHHHHEEEEEECCCCH------------HHHHHHHH
T ss_conf 9998459765564000322046452225899732767---78767763121554116767------------88999999
Q ss_pred HHHHHHHHHHHHCCCCC---CC-CHHHHHHHHHHHHH
Q ss_conf 99999999999878898---87-88999999999984
Q gi|254781225|r 657 KWFLKGVKAYISKGLDV---DI-PEVCLKAKEEERQG 689 (789)
Q Consensus 657 ~w~l~g~~~~~~~g~~~---~~-p~~v~~a~~~y~~~ 689 (789)
++++ .+...++|++. .. .+++....+.|-+|
T Consensus 504 ~~l~--p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrE 538 (784)
T PRK10787 504 RHLL--PKQIERNALKKGELTVDDSAIIGIIRYYTRE 538 (784)
T ss_pred HHCH--HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 7453--9999982899656743999999987533654
No 285
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=85.95 E-value=0.59 Score=24.08 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=5.1
Q ss_pred CCCCEEEECC
Q ss_conf 2684388047
Q gi|254781225|r 130 GCGQYFVAYN 139 (789)
Q Consensus 130 ~~G~q~V~~g 139 (789)
..|.++++.|
T Consensus 28 ~~Ge~~~llG 37 (353)
T TIGR03265 28 KKGEFVCLLG 37 (353)
T ss_pred CCCCEEEEEC
T ss_conf 8999999999
No 286
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=85.88 E-value=1.1 Score=22.31 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=23.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..--.+-+.|.-++||||+..+|..++-.
T Consensus 348 ~~GE~l~lvG~sGsGKSTl~r~l~gl~~~ 376 (623)
T PRK10261 348 WPGETLSLVGESGSGKSTTGRALLRLVES 376 (623)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89958999767876689999998566466
No 287
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.86 E-value=0.6 Score=24.00 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=20.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 9999707886257899999997233
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
++-+.|+-+.||||++++|..++-.
T Consensus 27 i~gllGpNGAGKSTll~~i~Gl~~p 51 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 5999999982399999999759668
No 288
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=85.85 E-value=0.66 Score=23.75 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEECCCCCHHHHHHHHHHHHCC
Q ss_conf 9707886257899999997233
Q gi|254781225|r 506 IRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 506 ~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+.|+.++||||+.+.|+.+|+.
T Consensus 4 IaG~sgSGKST~a~~l~~~l~~ 25 (220)
T cd02025 4 IAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
T ss_conf 7889987799999999998600
No 289
>PRK06761 hypothetical protein; Provisional
Probab=85.84 E-value=0.82 Score=23.11 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=14.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 79999707886257899999997233
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+++|.-|-.|+||||+.+.+...|-.
T Consensus 3 kLIiIEGlPGsGKSTta~~l~d~L~~ 28 (281)
T PRK06761 3 KLIIIEGLPGFGKSTTAHLLNDKLSQ 28 (281)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 17999668999801499999999986
No 290
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.82 E-value=0.65 Score=23.81 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=24.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
..-.++-+.|+-++||||++++|..++-..
T Consensus 24 ~~Gei~gl~G~NGaGKSTLl~~i~Gl~~p~ 53 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPD 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 799399998789979999999997685778
No 291
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=85.80 E-value=0.62 Score=23.93 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=20.5
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.--++-+.|+-++||||++++|..++-.
T Consensus 30 ~Gei~~liGpnGaGKSTL~~~i~Gl~~p 57 (255)
T PRK11300 30 EQEVVSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9979999989996499999999679889
No 292
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=85.76 E-value=1.6 Score=21.27 Aligned_cols=146 Identities=18% Similarity=0.159 Sum_probs=77.6
Q ss_pred HCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 87999999999999999975987433799997078862578999999972330003442676420124555568988997
Q gi|254781225|r 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 (789)
Q Consensus 476 ~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 555 (789)
.|+|.... -+.+..+ .+.......+-+++.|.++-|||..+|- +||+.. +..+.+.-+..+....+. .
T Consensus 8 ~~~~a~~~-~~~el~a-~~~~~~~~sltILvlGKtGVGKSsTINS---ifgE~~-~~~~aF~~~t~r~~~v~~------t 75 (249)
T cd01853 8 FFPDAAQT-KALELEA-KGKEELDFSLTILVLGKTGVGKSSTINS---IFGERK-AATSAFQSETLRVREVSG------T 75 (249)
T ss_pred CCCHHHHH-HHHHHHH-CCCCCCCCEEEEEEEECCCCCHHHHHHH---HCCCCC-CCCCCCCCCCCCEEEEEE------E
T ss_conf 08688999-9999985-1352456436999980687645776776---508541-344776778865089987------5
Q ss_pred HCCCEEEEEECCC--CC---CCCCCC---EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCC----CCCE
Q ss_conf 3898099993467--77---601310---0245415985873210478606871452899973886342679----8416
Q gi|254781225|r 556 LMGSRIVIISETN--EN---DEINAA---KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP----DDAW 623 (789)
Q Consensus 556 l~g~r~~~~~E~~--~~---~~~~~~---~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~----d~~~ 623 (789)
..|-++++++-|. ++ ...|.. .+|..+-+-++.+ -+|-+-. .. .=+-.+++|.++.- ..+|
T Consensus 76 v~G~kl~iIDTPGL~~~~~~~~~N~k~l~~iKr~l~~~~~Dv-vLYvDRL-D~-----~r~d~~D~~ll~~iT~~fG~~I 148 (249)
T cd01853 76 VDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDV-VLYVDRL-DM-----YRRDYLDLPLLRAITDSFGPSI 148 (249)
T ss_pred ECCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE-EEEEECC-CC-----CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 334489986089877665422130999999999962899978-9998457-66-----2458642899999998767888
Q ss_pred EEEEEEEECCCCCCCCC
Q ss_conf 64689996588788878
Q gi|254781225|r 624 WRRYIVIPFDKPIANRD 640 (789)
Q Consensus 624 ~rR~~iipF~~~~~~~d 640 (789)
|+|.+|+=-..+....|
T Consensus 149 W~naivvLTHa~~~pPd 165 (249)
T cd01853 149 WRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHEEEECCCCCCCC
T ss_conf 75454035346648999
No 293
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.76 E-value=0.86 Score=22.96 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=22.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 37999970788625789999999723300
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
.-|-+++|..|.|||.+++.|.-++|..+
T Consensus 21 ~GlnVlTGETGAGKSIlidAL~lllG~Ra 49 (276)
T cd03241 21 EGLTVLTGETGAGKSILLDALSLLLGGRA 49 (276)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99758878998889999999999628998
No 294
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=85.73 E-value=0.68 Score=23.66 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=25.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCHHH
Q ss_conf 7999970788625789999999723300-03442676
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASD 537 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~~~ 537 (789)
.-+-+.||.|.||+|++|+|+.+.-+.. ....+-..
T Consensus 362 ~TvAIVGPTGAGKTTLiNLLQRVydP~~G~I~IDG~~ 398 (592)
T TIGR01192 362 QTVAIVGPTGAGKTTLINLLQRVYDPKVGQILIDGID 398 (592)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEE
T ss_conf 5689877899717899887753106986548872424
No 295
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF, 6.3.2.15 from EC), which is required to catalyze the final step in the synthesis of the cytoplasmic precursor of the bacterial cell wall peptidoglycan. ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.. The crystal structure of the MurF apo-enzyme has been determined and refined to 2.3 A resolution. It contains three consecutive open alpha/beta-sheet domains. The topology of the N-terminal domain of MurF is unique, while its central and C-terminal domains exhibit similar mononucleotide and dinucleotide-binding folds to MurD. The apo-enzyme of MurF crystal structure reveals an open conformation with the three domains juxtaposed in a crescent-like arrangement creating a wide-open space where substrates are expected to bind. As such, catalysis is not feasible and significant domain closure is expected upon substrate binding . ; GO: 0005524 ATP binding, 0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate-D-alanyl-D-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=85.72 E-value=0.79 Score=23.21 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=9.5
Q ss_pred HHHHHHHHCCCCC--EEE-ECCCC
Q ss_conf 8999876418997--699-67889
Q gi|254781225|r 80 TFKDTFEILHGTP--IVR-IGQKP 100 (789)
Q Consensus 80 ~~~~~~~~l~g~p--~~~-~g~~~ 100 (789)
.+..+..+....+ ++= +|+.|
T Consensus 71 ~lA~~~~~~~~~~~~~igiTGS~G 94 (462)
T TIGR01143 71 ALASAKREKFSAKRRVIGITGSSG 94 (462)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 999999974399758999856896
No 296
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=85.67 E-value=0.68 Score=23.66 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=24.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 4337999970788625789999999723300
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
..-.++-+.|+-++||||++++|..++-...
T Consensus 24 ~~Gei~gllG~NGaGKSTLl~~i~Gl~~p~~ 54 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDS 54 (208)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 6981999999999999999999957837898
No 297
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=85.66 E-value=0.75 Score=23.38 Aligned_cols=24 Identities=46% Similarity=0.493 Sum_probs=17.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 337999970788625789999999
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKY 523 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789)
.-.++-+.|+-|+|||||+++|..
T Consensus 31 ~Gei~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 31 AGEIHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 998999999999999999999727
No 298
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=85.62 E-value=1.1 Score=22.16 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.4
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 3379999707886257899999997
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
.+.+++++|+-..||||+++.+.-+
T Consensus 29 ~~~~~iiTGpN~sGKSt~Lk~igl~ 53 (216)
T cd03284 29 ERQILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8459999899877459999999999
No 299
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=85.62 E-value=0.64 Score=23.84 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=17.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 79999707886257899999997233
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
-++-+.|+-++||||++++|..++-.
T Consensus 27 ei~~llGpNGAGKSTll~~i~Gl~~p 52 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLVKP 52 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 59999999996199999999779999
No 300
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=85.61 E-value=1 Score=22.45 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=21.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 43379999707886257899999997
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
..+.+++++|+-..|||||+..+.-.
T Consensus 27 ~~~~~~iiTGpN~gGKSt~lkti~l~ 52 (213)
T cd03281 27 GGPSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98259999899987659999999999
No 301
>COG3910 Predicted ATPase [General function prediction only]
Probab=85.59 E-value=0.72 Score=23.49 Aligned_cols=24 Identities=46% Similarity=0.682 Sum_probs=13.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 999970788625789999999723
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
.-+++|.-++||||+++.|...+|
T Consensus 39 IT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 39 ITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 489976898657889999996565
No 302
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.57 E-value=0.69 Score=23.61 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=23.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 4337999970788625789999999723300
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
...-++-+.|+-+.||||++++|..++-..+
T Consensus 24 ~~Gei~gllGpNGAGKSTll~~i~Gl~~p~~ 54 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54 (220)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 8983999999998719999999976978896
No 303
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=85.51 E-value=1.8 Score=20.79 Aligned_cols=87 Identities=22% Similarity=0.358 Sum_probs=38.5
Q ss_pred CEEEEEEECCCC---CHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHH-CC---CEEEEEECCCCCCCC
Q ss_conf 379999707886---25789999999723300034426764201245555689889973-89---809999346777601
Q gi|254781225|r 501 QRFIHIRGVGGS---GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MG---SRIVIISETNENDEI 573 (789)
Q Consensus 501 ~~~~~~~G~G~n---GKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l-~g---~r~~~~~E~~~~~~~ 573 (789)
.+...++|.||+ +|=-.+--+..-+-|+.+... ..-|..+ +..-+..+ .| +.+.+ .++....+
T Consensus 364 ~rli~VfG~gG~Rd~~KR~~mg~ia~~~ad~vi~T~-----DnPr~Ed---p~~I~~~i~~g~~~~~~~~--i~dR~~AI 433 (481)
T PRK00139 364 GRLICVFGCGGDRDKGKRPLMGAIAERLADVVIVTS-----DNPRSED---PAAIIADILAGITHANAVV--IEDRAEAI 433 (481)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEECC-----CCCCCCC---HHHHHHHHHHCCCCCCEEE--ECCHHHHH
T ss_conf 986999898677770141899999997199899939-----9989989---9999999982698799289--78999999
Q ss_pred CCCEEEEEECCCEEEEEECCCCCCE
Q ss_conf 3100245415985873210478606
Q gi|254781225|r 574 NAAKIKQMTGGDCMTARLNYGNTYS 598 (789)
Q Consensus 574 ~~~~~K~ltggD~i~ar~~~~~~~~ 598 (789)
..+ |.....||.|-.-.|.-+.+.
T Consensus 434 ~~a-i~~a~~~d~vliaGKGhE~~q 457 (481)
T PRK00139 434 KYA-IALAKPGDVVLIAGKGHEDYQ 457 (481)
T ss_pred HHH-HHHCCCCCEEEEEECCCCCCE
T ss_conf 999-985599999999735876668
No 304
>KOG2655 consensus
Probab=85.51 E-value=0.65 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=12.8
Q ss_pred CCCCCEEEEEEECCCCCHHHH-HHHHHHHHC
Q ss_conf 874337999970788625789-999999723
Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTL-MNLIKYAFG 526 (789)
Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~-~~~l~~llG 526 (789)
+++-|+++.++-|-+.|=+.+ +.++..+-.
T Consensus 127 D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~ 157 (366)
T KOG2655 127 DNRVHCCLYFISPTGHGLKPLDIEFMKKLSK 157 (366)
T ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 8844899998378888886866999997732
No 305
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=85.49 E-value=0.9 Score=22.86 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=24.0
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+-+.+.+.|+-++||||+.+-+.+.|+.
T Consensus 7 F~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 7 FVKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred HHEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 3513556457665717999999999688
No 306
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=85.41 E-value=0.61 Score=23.98 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=27.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCHHHH
Q ss_conf 4337999970788625789999999723300-034426764
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDI 538 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~~~~ 538 (789)
+.-.-+-+.||.|.||||+++||..-+-... ...++-..+
T Consensus 364 ~PGEtvAlVGPSGAGKSTlf~LLLRFYDP~~G~ilLDGvd~ 404 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDI 404 (576)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCH
T ss_conf 27765887668876279999999860488876577466414
No 307
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=85.34 E-value=0.68 Score=23.66 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=22.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
..--++-+.|+-++||||++++|..++-..
T Consensus 29 ~~Gei~gllG~NGaGKSTllk~i~Gl~~p~ 58 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLEPD 58 (218)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 598299999999984999999997797789
No 308
>PRK06620 hypothetical protein; Validated
Probab=85.33 E-value=1.3 Score=21.87 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999999999999999759874337999970788625789999999723300
Q gi|254781225|r 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 479 d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
+...+.++..|-.. .|.+.....++++|+.++|||-+.++.+..-+.+.
T Consensus 24 N~~A~~~i~~wp~~--~~~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~ 72 (214)
T PRK06620 24 NDQAYNIIKNWQCM--FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI 72 (214)
T ss_pred HHHHHHHHHHCHHC--CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 99999999836302--56686555599987999988999999999828588
No 309
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=85.33 E-value=0.67 Score=23.69 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=23.3
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 74337999970788625789999999723
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
...-.++-+.|+-|+||||++++|..+..
T Consensus 20 v~~Ge~v~iiGpNGaGKSTLlk~i~Gl~p 48 (245)
T PRK03695 20 VRAGEILHLVGPNGAGKSTLLARMAGLLS 48 (245)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 95998999997899419999999846688
No 310
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=85.31 E-value=1 Score=22.42 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.3
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 379999707886257899999997233
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
...+.++|-.++||||+.+.+...|=.
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 859996468888787999999999997
No 311
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=85.27 E-value=1.1 Score=22.19 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=25.3
Q ss_pred CCEEEEEE-ECCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 33799997-078862578999999972330003442
Q gi|254781225|r 500 AQRFIHIR-GVGGSGKSTLMNLIKYAFGNQYVINAE 534 (789)
Q Consensus 500 ~~~~~~~~-G~G~nGKSt~~~~l~~llG~~~~~~~~ 534 (789)
.++++|-+ |..++||||+.+.|...||...++..+
T Consensus 6 ~~~iiIgIaG~SgSGKTTv~~~l~~~~~~~~~~~I~ 41 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVIS 41 (218)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 766999986798778899999999982867524765
No 312
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=85.23 E-value=0.67 Score=23.70 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=19.9
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
...++-+.|+-++||||++++|..++-.
T Consensus 25 ~Gei~~liGpNGaGKSTL~~~i~Gl~~p 52 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9979999999994099999999779999
No 313
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=85.17 E-value=0.8 Score=23.19 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 4337999970788625789999999723300
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
+-...+-+.|+.|.||||+++++-..+..+.
T Consensus 376 ~pG~~vAl~G~SGaGKSTLL~lLLGf~~P~~ 406 (570)
T TIGR02857 376 EPGERVALVGPSGAGKSTLLNLLLGFVEPTE 406 (570)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 3870488862799978899999971576446
No 314
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=85.12 E-value=0.74 Score=23.42 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=13.1
Q ss_pred CCCCCCEEEEEEECCCC-CHHHHHHHHHHHHC
Q ss_conf 98743379999707886-25789999999723
Q gi|254781225|r 496 GGNKAQRFIHIRGVGGS-GKSTLMNLIKYAFG 526 (789)
Q Consensus 496 g~~~~~~~~~~~G~G~n-GKSt~~~~l~~llG 526 (789)
.+++-++++.+.-|.+. -|..=+.+|+.|-.
T Consensus 109 ~D~RVH~cLYFI~Ptgh~L~~lDi~~mk~Ls~ 140 (280)
T pfam00735 109 VDNRVHCCLYFISPTGHGLKPLDVEFMKKLHE 140 (280)
T ss_pred CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 88843799997568888886889999998714
No 315
>PRK00300 gmk guanylate kinase; Provisional
Probab=85.06 E-value=0.63 Score=23.90 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=39.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf 433799997078862578999999972330003442676420124555568988997389809999346777601310
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~ 576 (789)
+.-+++++.||.|.||+|+++.|..-..+....+.+. ++ |.+..+ ...|.-..++++.+-...+..+
T Consensus 5 ~~g~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~--TT--R~pR~~-------E~dG~dY~Fvs~eeF~~~i~~g 71 (208)
T PRK00300 5 RRGLLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSA--TT--RAPRPG-------EVDGVHYHFVSREEFEEMIENG 71 (208)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEE--EC--CCCCCC-------CCCCCEEEEECHHHHHHHHHHC
T ss_conf 1883899999998899999999997299868998974--68--898998-------7789657996199999998628
No 316
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=85.06 E-value=0.76 Score=23.33 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=7.3
Q ss_pred EEEECCCCEEEECCCC
Q ss_conf 3485268438804776
Q gi|254781225|r 126 LDILGCGQYFVAYNIH 141 (789)
Q Consensus 126 iEi~~~G~q~V~~gsh 141 (789)
++|- .|.++++-||.
T Consensus 27 L~I~-~g~FvtViGsN 41 (263)
T COG1101 27 LEIA-EGDFVTVIGSN 41 (263)
T ss_pred EEEC-CCCEEEEECCC
T ss_conf 1224-78469997679
No 317
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=85.03 E-value=0.87 Score=22.96 Aligned_cols=23 Identities=39% Similarity=0.394 Sum_probs=11.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 79999707886257899999997
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
.++-+.|+-|+||||++++|..+
T Consensus 28 ei~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 28 EVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999999999999998377
No 318
>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.
Probab=85.02 E-value=0.69 Score=23.60 Aligned_cols=28 Identities=46% Similarity=0.546 Sum_probs=21.2
Q ss_pred CCCCEEEEEEECCCCCHHHHHH-HHHHHH
Q ss_conf 7433799997078862578999-999972
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMN-LIKYAF 525 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~-~l~~ll 525 (789)
.....|...+|..|+|||||++ +|-.++
T Consensus 662 iPLG~~t~iTGVSGSGKSTLind~L~~~~ 690 (956)
T TIGR00630 662 IPLGLFTCITGVSGSGKSTLINDTLYPAL 690 (956)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 40771799974458745777999999999
No 319
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=85.02 E-value=0.56 Score=24.24 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=19.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
....++.++|+-++||||++.++..++-..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~ 57 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGLLKPT 57 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCC
T ss_conf 789899998899988999999953767688
No 320
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=85.02 E-value=1.3 Score=21.76 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=20.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 43379999707886257899999997
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
....+++++|+-..||||+++.+.-.
T Consensus 27 ~~~~~~iITGpN~gGKSt~Lktigl~ 52 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 97259999899988719999999999
No 321
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=85.00 E-value=0.95 Score=22.68 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=35.2
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 337999970788625789999999723300034426764201245555689889973898099993467
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~ 568 (789)
.-.++++.||.+.||||++..|..-. +...+ .+.++ |.+..| ...|+-..++++-+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~S---VS~TT--R~pR~g-------Ev~G~dY~Fvs~~E 58 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFS---VSATT--RKPRPG-------EVDGVDYFFVTEEE 58 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC-CEEEE---EEECC--CCCCCC-------CCCCCEEEECCHHH
T ss_conf 86399998998888899999998634-93799---98526--799998-------75780247577999
No 322
>pfam03668 ATP_bind_2 P-loop ATPase protein family. This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).
Probab=84.93 E-value=1.3 Score=21.80 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCE--EEEEEE-CCCCCHHHHH-HHHHHHHC
Q ss_conf 789999988879999999999999999759874337--999970-7886257899-99999723
Q gi|254781225|r 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR--FIHIRG-VGGSGKSTLM-NLIKYAFG 526 (789)
Q Consensus 467 p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~--~~~~~G-~G~nGKSt~~-~~l~~llG 526 (789)
+...+|+.+.=.-.+..+.+..++.+.|-.-..+.+ +-|-+| +||-=-||++ +-+..-|.
T Consensus 205 ~~V~~yv~~~~~~~~f~~~i~~ll~~~lp~y~~egksyltIaiGCTGGqHRSV~iae~L~~~l~ 268 (284)
T pfam03668 205 KPVADYVLHHTEVAEFIESTRRLLSLWLPMYEREGKSYLTIAIGCTGGKHRSVYIAEQLADYFR 268 (284)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 5899999759109999999999999999989984998799997688986279999999999998
No 323
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=84.93 E-value=0.64 Score=23.82 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=36.0
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECC
Q ss_conf 74337999970788625789999999723300-03442676420124555568988997389809999346
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~ 567 (789)
...-..+-+.|..|+||||+.++|-.-+-... -+..+-..+. .-.|+.|+.--..+.++.
T Consensus 385 ~~~G~~vALVGRSGSGKsTlv~LlPRFy~p~~G~IllDG~~l~----------d~~L~~LR~q~alVsQ~V 445 (603)
T TIGR02203 385 VEPGETVALVGRSGSGKSTLVNLLPRFYEPDSGQILLDGVDLQ----------DYTLADLRRQVALVSQDV 445 (603)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCHHH----------HCCHHHHHHHHHHHCCCE
T ss_conf 1587359987068853899985523660458885652784044----------302663562300021523
No 324
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=84.92 E-value=0.73 Score=23.45 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=8.1
Q ss_pred CCCEEECCCCCCC-CCCHHHHC
Q ss_conf 7937974388855-89865501
Q gi|254781225|r 432 QDGILDLETGQKV-KPTKELYI 452 (789)
Q Consensus 432 ~NGv~dl~t~~~~-~~~~~~~~ 452 (789)
.+-|+=++.|++. .+.|++.+
T Consensus 196 aD~v~vm~~G~i~~~G~~~ev~ 217 (352)
T PRK11144 196 ADHVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred CCEEEEEECCEEEEECCHHHHH
T ss_conf 9999999899999986999987
No 325
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=84.81 E-value=1.1 Score=22.23 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 433799997078862578999999972
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
.+-+.+-+.|+-++|||||.+-|...|
T Consensus 173 ~F~k~V~ilG~eStGKstLv~~lA~~~ 199 (346)
T TIGR01526 173 FFVKTVAILGGESTGKSTLVNKLAEKL 199 (346)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 204588885588863689999999984
No 326
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=84.77 E-value=1.3 Score=21.82 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=20.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 43379999707886257899999997
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
....+++++|+-..||||+++.+.-+
T Consensus 28 ~~~~~~iiTGpN~sGKSt~lk~i~l~ 53 (218)
T cd03286 28 TSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 97408999899988738999999999
No 327
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=84.72 E-value=1.2 Score=21.96 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=23.7
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 74337999970788625789999999723
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
...+-|.+++|.-|.||||++..+..-+.
T Consensus 40 ~~~~g~~lltGe~GtGKTtllr~l~~~l~ 68 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 64896599972998988999999998459
No 328
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=84.65 E-value=1.2 Score=22.11 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=21.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 7999970788625789999999723
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
+.+++.|..|+||||+...|..-||
T Consensus 4 ~a~VVmGVsGsGKSTvg~~LA~~L~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 5799982898998999999999959
No 329
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=84.62 E-value=0.74 Score=23.40 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=19.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 337999970788625789999999723
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
...++.+.|+-|.|||||+++|..++-
T Consensus 27 ~Gei~~l~G~NGaGKTTLlk~i~Gl~~ 53 (206)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLLAGLLP 53 (206)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 994999989999989999999958878
No 330
>KOG0739 consensus
Probab=84.59 E-value=1.8 Score=20.84 Aligned_cols=130 Identities=19% Similarity=0.176 Sum_probs=71.7
Q ss_pred HHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC---CCCCHHHHHHCCCEEEEEECCCC
Q ss_conf 975987433799997078862578999999972330003442676420124555---56898899738980999934677
Q gi|254781225|r 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA---GKANPSLIRLMGSRIVIISETNE 569 (789)
Q Consensus 493 ~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~---~~~~~~la~l~g~r~~~~~E~~~ 569 (789)
.++|..+.=.-+.|||+.+.|||-+......--+...-+..+..+++.=-+ .| -..-|++||-.---++++.|.+.
T Consensus 158 lFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG-ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739 158 LFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG-ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 415887754257886799975779999987414770687301788998732-1799999999998734994798634444
Q ss_pred CCCCCCCEEEEEECCCEEEEEEC-----CC-CCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE---EEEECC
Q ss_conf 76013100245415985873210-----47-860687145289997388634267984166468---999658
Q gi|254781225|r 570 NDEINAAKIKQMTGGDCMTARLN-----YG-NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY---IVIPFD 633 (789)
Q Consensus 570 ~~~~~~~~~K~ltggD~i~ar~~-----~~-~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~---~iipF~ 633 (789)
- .. +-.+|+.-.+|+. -+ +. +.-.....|++.+-+.|-+ -|.||.||+ +-||.+
T Consensus 237 l---cg----~r~enEseasRRIKTEfLVQMqG-VG~d~~gvLVLgATNiPw~--LDsAIRRRFekRIYIPLP 299 (439)
T KOG0739 237 L---CG----SRSENESEASRRIKTEFLVQMQG-VGNDNDGVLVLGATNIPWV--LDSAIRRRFEKRIYIPLP 299 (439)
T ss_pred H---CC----CCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCEEEEECCCCCHH--HHHHHHHHHHCCEECCCC
T ss_conf 3---26----88777117777777788876406-6658886489723788436--779999876502301087
No 331
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=84.57 E-value=0.78 Score=23.26 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 33799997078862578999999972330
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.-.++-+.|+-++||||++++|..++-..
T Consensus 25 ~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~ 53 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPD 53 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 99899999889989999999995776898
No 332
>TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . .
Probab=84.53 E-value=2.4 Score=20.02 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=44.2
Q ss_pred CCCH-HH-HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC-CCCCCCHHHHHH
Q ss_conf 7999-99-9999999999975987433799997078862578999999972330-003442676420
Q gi|254781225|r 477 FESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ-YVINAEASDIMQ 540 (789)
Q Consensus 477 ~~d~-e~-~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~-~~~~~~~~~~~~ 540 (789)
+||+ .. .++=++++--.|--+......+.|.|.=|+||+||..-+..-||-. ++.|++-+++..
T Consensus 2 ~pdEt~a~~~~~~~~a~~llklh~d~~~v~~L~GDlGaGKTtl~~G~~~~LG~~~~~~SPTftlv~~ 68 (147)
T TIGR00150 2 LPDETKAMDKLGKAFAKPLLKLHLDLGTVVLLKGDLGAGKTTLVKGLLQGLGITGNVTSPTFTLVNE 68 (147)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEE
T ss_conf 7126789999999999999985199753899732346665899999998379226885793210100
No 333
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=84.53 E-value=1.1 Score=22.16 Aligned_cols=25 Identities=40% Similarity=0.686 Sum_probs=21.6
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 3799997078862578999999972
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
.-++.+.|+-+.||||+++.|...|
T Consensus 28 ~~lflI~G~nGsGKSTIlDAI~~aL 52 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8889998899997889999999998
No 334
>KOG0058 consensus
Probab=84.52 E-value=0.98 Score=22.59 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=24.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 4337999970788625789999999723300
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
+.-.-.-+.|+.++||||+.++|.++.-...
T Consensus 492 ~pGe~vALVGPSGsGKSTiasLL~rfY~Pts 522 (716)
T KOG0058 492 RPGEVVALVGPSGSGKSTIASLLLRFYDPTS 522 (716)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 7997799988999888999999997368888
No 335
>PRK03839 putative kinase; Provisional
Probab=84.47 E-value=1.2 Score=22.08 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 9999707886257899999997233
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
++.++|+.|.||||+.++|+.-+|=
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~lg~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 8999789999989999999997698
No 336
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=84.47 E-value=1.2 Score=22.09 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=21.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 79999707886257899999997233
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
=++++.|+.++||||++..+-..+..
T Consensus 2 GliLitG~TGSGKTTtl~all~~i~~ 27 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 38999899999799999999985363
No 337
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=84.36 E-value=0.77 Score=23.31 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=19.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 43379999707886257899999997
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
+.--.+-+.|+-|+|||||+++|...
T Consensus 284 ~~GE~~~i~G~nGsGKSTLl~~l~G~ 309 (490)
T PRK10938 284 NPGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 38988999867888799999998088
No 338
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=84.32 E-value=1 Score=22.56 Aligned_cols=12 Identities=8% Similarity=-0.272 Sum_probs=5.5
Q ss_pred CCCCCCHHHHCC
Q ss_conf 855898655010
Q gi|254781225|r 442 QKVKPTKELYIT 453 (789)
Q Consensus 442 ~~~~~~~~~~~t 453 (789)
=..||+-.++..
T Consensus 383 YkY~HD~~~~~v 394 (436)
T COG2256 383 YKYPHDYPAGAV 394 (436)
T ss_pred CCCCCCCCCCCC
T ss_conf 678988766630
No 339
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=84.31 E-value=1.6 Score=21.10 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=76.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC---------CCCCCHHHHH----
Q ss_conf 988879999999999999999759874337999970788625789999999723300---------0344267642----
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY---------VINAEASDIM---- 539 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~---------~~~~~~~~~~---- 539 (789)
|.++.|.+.-.+- +=-+..|.. =++++|+-++|||.+..=+..+|..-. +.+....+..
T Consensus 178 ~~DV~GQ~~AKrA----leiAAAGgH----nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~~~~~~~~~~ 249 (490)
T COG0606 178 FKDVKGQEQAKRA----LEIAAAGGH----NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPL 249 (490)
T ss_pred HHHHCCCHHHHHH----HHHHHHCCC----CEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 6664384999999----999984388----67875699886567642310259998708889998887635432467864
Q ss_pred -HCC---CC-----------CCCCCCHHHHHHCCCEEEEEECCCCCCC-CCCCEEEEEECCCEEEEEECCCCCCEEEECC
Q ss_conf -012---45-----------5556898899738980999934677760-1310024541598587321047860687145
Q gi|254781225|r 540 -QNR---PP-----------EAGKANPSLIRLMGSRIVIISETNENDE-INAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 (789)
Q Consensus 540 -~~~---~~-----------~~~~~~~~la~l~g~r~~~~~E~~~~~~-~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~ 603 (789)
..| .+ ..+.+.|.-..|.+--+.+.+|..+-++ +=+++.-=|-.|.-+-.|... + ++|.-.
T Consensus 250 ~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~-~--v~ypa~ 326 (490)
T COG0606 250 KIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGS-K--VTYPAR 326 (490)
T ss_pred CEECCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCC-E--EEEEEE
T ss_conf 1107876887402288973789988987354303877886144210599999973741258179997587-1--687212
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 28999738863426798416646899965
Q gi|254781225|r 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 (789)
Q Consensus 604 ~~~~~~~N~~P~~~~~d~~~~rR~~iipF 632 (789)
|.+++++|--|. +++.+--+|...-|.
T Consensus 327 Fqlv~AmNpcpc--G~~~~~~~~C~c~~~ 353 (490)
T COG0606 327 FQLVAAMNPCPC--GNLGAPLRRCPCSPR 353 (490)
T ss_pred EEEHHHCCCCCC--CCCCCCCCCCCCCHH
T ss_conf 677522399976--478887777578878
No 340
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.25 E-value=1 Score=22.55 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=6.8
Q ss_pred EEECCCEEECCCCCC
Q ss_conf 660793797438885
Q gi|254781225|r 429 LGEQDGILDLETGQK 443 (789)
Q Consensus 429 l~~~NGv~dl~t~~~ 443 (789)
+.+.+=|..++.|++
T Consensus 201 l~msDri~Vm~~G~I 215 (352)
T COG3842 201 LAMSDRIAVMNDGRI 215 (352)
T ss_pred HHHCCCEEECCCCCE
T ss_conf 632362278217704
No 341
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=84.24 E-value=0.81 Score=23.16 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=22.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..--++-+.|+-++||||++++|..++-.
T Consensus 24 ~~Gei~gliG~nGaGKSTL~~~i~Gl~~p 52 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRP 52 (236)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 89989999989997399999999679878
No 342
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=84.24 E-value=0.82 Score=23.11 Aligned_cols=30 Identities=20% Similarity=0.456 Sum_probs=23.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
+.--++-+.|.-++|||||+++|..++...
T Consensus 276 ~~GEi~gi~G~nGsGKsTL~~~l~Gl~~~~ 305 (501)
T PRK10762 276 RKGEILGVSGLMGAGRTELMKVLYGALPRT 305 (501)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 688189966788876889999981876777
No 343
>PRK00064 recF recombination protein F; Reviewed
Probab=84.22 E-value=1.5 Score=21.30 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=11.8
Q ss_pred HHHHHHHCCCCCCCEEEEEEE
Q ss_conf 999999759874337999970
Q gi|254781225|r 488 RCVGMALLGGNKAQRFIHIRG 508 (789)
Q Consensus 488 ~~~g~~l~g~~~~~~~~~~~G 508 (789)
...|+++.|-.+....+.+-|
T Consensus 247 ~~~g~T~~GPHRdD~~~~~~~ 267 (355)
T PRK00064 247 RARGRTLVGPHRDDLRVRING 267 (355)
T ss_pred HHHCCCCCCCCCCEEEEEECC
T ss_conf 982888889873438999898
No 344
>KOG0082 consensus
Probab=84.16 E-value=1.1 Score=22.34 Aligned_cols=45 Identities=7% Similarity=0.041 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEE--CCCCCHHHHHHHHHHHHC
Q ss_conf 9999999999999759874337999970--788625789999999723
Q gi|254781225|r 481 EVMDYFTRCVGMALLGGNKAQRFIHIRG--VGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 481 e~~~~l~~~~g~~l~g~~~~~~~~~~~G--~G~nGKSt~~~~l~~llG 526 (789)
+...|++.-+--...... ...+...+= ...|=+.+|-.+...++.
T Consensus 299 ~a~~yI~~kF~~l~~~~~-k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082 299 EAAKYIRKKFEELNKNKD-KKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred HHHHHHHHHHHHHHCCCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999741557-76057787604588999999999999999
No 345
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=84.15 E-value=1.2 Score=22.00 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=19.9
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 379999707886257899999997
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
+.+++++|+-..||||++..+.-.
T Consensus 25 ~~~~iiTGpN~~GKSt~Lk~i~l~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 858999899998659999999999
No 346
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=83.92 E-value=1.5 Score=21.39 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=20.3
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 3379999707886257899999997
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
.+.+++++|+-..||||+++.+.-+
T Consensus 30 ~~~~~iiTGpN~~GKSt~lk~i~l~ 54 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 8448999789988728999999999
No 347
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.85 E-value=1.2 Score=21.96 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=8.1
Q ss_pred EEEECCCCCHHHHHHHHHHHHC
Q ss_conf 9970788625789999999723
Q gi|254781225|r 505 HIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 505 ~~~G~G~nGKSt~~~~l~~llG 526 (789)
-++||-+.||||++.++..+++
T Consensus 31 s~IGPNGAGKSTLLS~~sRL~~ 52 (252)
T COG4604 31 SIIGPNGAGKSTLLSMMSRLLK 52 (252)
T ss_pred EEECCCCCCHHHHHHHHHHHCC
T ss_conf 8888998648889999998526
No 348
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=83.83 E-value=0.77 Score=23.28 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=21.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99970788625789999999723300
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
+-+.|+.++|||||.+.|...|+...
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~~ 27 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNG 27 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 89989897789999999999984648
No 349
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=83.81 E-value=1.3 Score=21.82 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=19.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 379999707886257899999997
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
..+++++|+-..||||+++.+..+
T Consensus 29 ~~~~iiTGpN~sGKSt~lkti~l~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 828999899887539999999999
No 350
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=83.78 E-value=1.2 Score=22.14 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=33.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEE
Q ss_conf 999970788625789999999723300034426764201245555689889973898099
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~ 562 (789)
-.+++|+.|.|||||+++|..-+..|... ....+.++++ .....+..|.+.-
T Consensus 443 HtlI~GpTGsGKTvll~~l~~q~~ry~~~--~vf~FDkd~s------~~i~~~a~GG~y~ 494 (815)
T PRK13873 443 HTLVVGPTGAGKSVLLALMALQFRRYPGS--QVFAFDFGGS------IRAAALAMGGDWH 494 (815)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCC--CEEEEECCCC------HHHHHHHHCCEEE
T ss_conf 43897889998999999999998644898--4899978987------8999998299876
No 351
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=83.75 E-value=1.3 Score=21.89 Aligned_cols=27 Identities=37% Similarity=0.506 Sum_probs=24.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 799997078862578999999972330
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
..++++|+.|.||||++..+...++..
T Consensus 3 ~~ill~G~~GsGKTtl~~~la~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 789999999702999999999872668
No 352
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=83.75 E-value=0.88 Score=22.92 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=22.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4337999970788625789999999723
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
+.--++-+.|.-++|||||+++|..++.
T Consensus 286 ~~GEi~gi~G~nGsGKsTLl~~L~Gl~~ 313 (513)
T PRK13549 286 RRGEILGIAGLVGAGRTELVQCLFGAYP 313 (513)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6884899747988658999999838988
No 353
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=83.69 E-value=0.54 Score=24.34 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
+.--++-+.|+-++||||++++|..++-..
T Consensus 24 ~~GEi~~liG~nGaGKSTll~~l~G~~~p~ 53 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPPA 53 (182)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHCCCCCCC
T ss_conf 599699998889999263778766986788
No 354
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=83.68 E-value=1.9 Score=20.70 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEE-CCCCCHHHHHHHHHHHHC
Q ss_conf 99999999999759874337999970-788625789999999723
Q gi|254781225|r 483 MDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 483 ~~~l~~~~g~~l~g~~~~~~~~~~~G-~G~nGKSt~~~~l~~llG 526 (789)
+..|+++..+..-. .. .-++| +|.|||+|.-++|..+|.
T Consensus 575 ~~AL~~lA~~~r~~-~~----~~vIgITGSnGKTTTKeml~~iLs 614 (953)
T PRK11929 575 LAALGRMATAWRSS-FS----LPVIAITGSNGKTTTKEMIAAILA 614 (953)
T ss_pred HHHHHHHHHHHHHH-CC----CCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99999999999975-79----978999678850789999999998
No 355
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=83.59 E-value=2.6 Score=19.76 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=19.8
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 7433799997078862578999999
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIK 522 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~ 522 (789)
...+.-+.+.|-.+-|||||+|.|.
T Consensus 99 ~~~~i~v~ivG~PNVGKSSlIN~L~ 123 (157)
T cd01858 99 DKKQISVGFIGYPNVGKSSIINTLR 123 (157)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 5564699998258853368898872
No 356
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=83.54 E-value=0.8 Score=23.18 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=22.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999970788625789999999723300
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
++++.|+.+.||+|+++.|...+..+.
T Consensus 1 livi~GPSG~GK~tl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCE
T ss_conf 999999998899999999985198776
No 357
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=83.51 E-value=1.2 Score=22.11 Aligned_cols=54 Identities=30% Similarity=0.234 Sum_probs=34.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEE
Q ss_conf 99997078862578999999972330003442676420124555568988997389809999
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~ 564 (789)
-.+++|+.|+|||||+++|...+-.|... ....+.++++. ..+.+..|-+..-+
T Consensus 458 HtlIiGpTGsGKTvll~fl~aq~~ky~~~--~vf~FDKd~s~------~i~~~a~GG~y~~l 511 (818)
T PRK13830 458 HTLIFGPTGSGKSTLLALIAAQFRRYAGA--QIFAFDKGRSM------LPLTLAAGGDHYEI 511 (818)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCH------HHHHHHHCCEEEEE
T ss_conf 05898999998899999999998642798--38997488768------99999809925873
No 358
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=83.40 E-value=0.93 Score=22.74 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 74337999970788625789999999723300
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
.+.--++-+.|.-++||||++++|..++-...
T Consensus 307 v~~GEi~gi~G~nGsGKsTL~k~l~Gl~~p~~ 338 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338 (520)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 72896899987888878999999948878987
No 359
>TIGR01978 sufC FeS assembly ATPase SufC; InterPro: IPR010230 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry represents SufC, which acts as an ATPase in the SUF system. SufC belongs to the ATP-binding cassette transporter family (IPR003439 from INTERPRO) but is no longer thought to be part of a transporter. The complex is reported as cytosolic or associated with the membrane.; GO: 0005524 ATP binding, 0006810 transport.
Probab=83.28 E-value=1 Score=22.55 Aligned_cols=11 Identities=0% Similarity=0.036 Sum_probs=4.8
Q ss_pred HHHHHCCCCCC
Q ss_conf 99974035788
Q gi|254781225|r 250 ARRWSKQGSTY 260 (789)
Q Consensus 250 w~~wS~~~~~y 260 (789)
.++++.++-+.
T Consensus 136 ~d~~l~R~lNe 146 (248)
T TIGR01978 136 SDEFLNRSLNE 146 (248)
T ss_pred HHHHHCCCCCC
T ss_conf 38871177874
No 360
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=83.27 E-value=2.7 Score=19.67 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=12.7
Q ss_pred CCCCCHHHHHHHHHHHHCC
Q ss_conf 7886257899999997233
Q gi|254781225|r 509 VGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 509 ~G~nGKSt~~~~l~~llG~ 527 (789)
.|--|=..+-..|+..+-.
T Consensus 444 ~G~~Gv~~LN~~i~~~l~~ 462 (607)
T PRK10875 444 EGPFGVAGLNERIEQALHQ 462 (607)
T ss_pred CCCHHHHHHHHHHHHHHCC
T ss_conf 6843099999999999560
No 361
>KOG0729 consensus
Probab=83.27 E-value=2 Score=20.54 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=84.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 78888757947899999888799999999999999997598743379999707886257899999997233000344267
Q gi|254781225|r 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 (789)
Q Consensus 457 ~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~ 536 (789)
.+.|..---|..-.+-|.+++.-+ +..---++-.| ....+=+++||+.++||+.......+--+.-.+-..-..
T Consensus 173 DvTY~DvGGCKeqIEklREVVE~P-----lL~PErfv~LG-IdPPKGvllyGPPGtGKTL~ARAVANRTdAcFIRViGSE 246 (435)
T KOG0729 173 DVTYSDVGGCKEQIEKLREVVELP-----LLHPERFVNLG-IDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC-----CCCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEHHHH
T ss_conf 863034536699999999988432-----55888887527-899873378689998610899987456674587631189
Q ss_pred HHHHCCCCC---CCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECC----C-CCCEEEECCEEEEE
Q ss_conf 642012455---556898899738980999934677760131002454159858732104----7-86068714528999
Q gi|254781225|r 537 DIMQNRPPE---AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY----G-NTYSESPASFTPFI 608 (789)
Q Consensus 537 ~~~~~~~~~---~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~----~-~~~~~~~p~~~~~~ 608 (789)
+. ++.-.. --..-|++|+-+-+.++++.|.+. +..++|-.=.|||.-.-|-+- + +.| .-+-+.+++|
T Consensus 247 LV-QKYvGEGARMVRElFeMAr~KKACiiFFDEiDA---iGGaRFDDg~ggDNEVQRTMLEli~QLDGF-DpRGNIKVlm 321 (435)
T KOG0729 247 LV-QKYVGEGARMVRELFEMARTKKACIIFFDEIDA---IGGARFDDGAGGDNEVQRTMLELINQLDGF-DPRGNIKVLM 321 (435)
T ss_pred HH-HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---CCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCCEEEEE
T ss_conf 99-998624689999999985236527998410102---267203578887279999999999860377-8888758986
Q ss_pred ECCCCCCCCCCCCCEEE
Q ss_conf 73886342679841664
Q gi|254781225|r 609 VPNKHLFVRNPDDAWWR 625 (789)
Q Consensus 609 ~~N~~P~~~~~d~~~~r 625 (789)
+||..- .-|.|+.|
T Consensus 322 ATNRPd---tLDpALlR 335 (435)
T KOG0729 322 ATNRPD---TLDPALLR 335 (435)
T ss_pred ECCCCC---CCCHHHCC
T ss_conf 348988---76876628
No 362
>pfam00488 MutS_V MutS domain V. This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters.
Probab=83.26 E-value=1.6 Score=21.12 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=19.4
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 379999707886257899999997
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
..+++++|+-..||||++..+.-+
T Consensus 42 ~~~~iiTGpN~sGKSt~Lk~igl~ 65 (234)
T pfam00488 42 SRILLITGPNMGGKSTYLRQVALI 65 (234)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 169999788777619999999999
No 363
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=83.20 E-value=1.1 Score=22.15 Aligned_cols=26 Identities=38% Similarity=0.555 Sum_probs=22.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 99997078862578999999972330
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
++++.|.-|+||||+...|..-+|--
T Consensus 1 liiv~GvsGsGKSTia~~La~~lg~~ 26 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAP 26 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 98999189999999999999971995
No 364
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=83.17 E-value=2.7 Score=19.65 Aligned_cols=50 Identities=32% Similarity=0.388 Sum_probs=34.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 9999988879999999999999999759874337999970788625789999999723
Q gi|254781225|r 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 469 ~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
.++++.--.-+.+..+||+.+++.- +=++.-|..++||+|++|.+.....
T Consensus 149 l~dli~~gt~~~~~a~~L~~av~~r--------~NILisGGTGSGKTTlLNal~~~i~ 198 (355)
T COG4962 149 LLDLIIFGTMIRRAAKFLRRAVGIR--------CNILISGGTGSGKTTLLNALSGFID 198 (355)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHC--------EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 9999873895889999999998620--------1599967878879999999971579
No 365
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=83.00 E-value=1.1 Score=22.18 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 997078862578999999972330
Q gi|254781225|r 505 HIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 505 ~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
-+.|..++||||+.+.|...+++-
T Consensus 3 gIaG~S~SGKTTla~~L~~~l~~~ 26 (187)
T cd02024 3 GISGVTNSGKTTLAKLLQRILPNC 26 (187)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 996888875999999999987998
No 366
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.98 E-value=1.3 Score=21.85 Aligned_cols=10 Identities=0% Similarity=0.155 Sum_probs=4.0
Q ss_pred HHHHHHHHHC
Q ss_conf 8999998887
Q gi|254781225|r 468 EFLDLVSGYF 477 (789)
Q Consensus 468 ~~~~~l~~~~ 477 (789)
.|...|..++
T Consensus 530 ~y~~Aie~al 539 (1163)
T COG1196 530 KYETALEAAL 539 (1163)
T ss_pred HHHHHHHHHH
T ss_conf 7999999995
No 367
>PRK07952 DNA replication protein DnaC; Validated
Probab=82.88 E-value=2.8 Score=19.57 Aligned_cols=118 Identities=15% Similarity=0.137 Sum_probs=60.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCC--CCCCCC-HHHHHHCCCC-CCCCCCHH--HHHHCCCEEEEEECCCCCC--CC
Q ss_conf 799997078862578999999972330--003442-6764201245-55568988--9973898099993467776--01
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ--YVINAE-ASDIMQNRPP-EAGKANPS--LIRLMGSRIVIISETNEND--EI 573 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~--~~~~~~-~~~~~~~~~~-~~~~~~~~--la~l~g~r~~~~~E~~~~~--~~ 573 (789)
.-++++|+-|+|||.|...|.+-+=+. .+.-.. ..++..-+.. ..+..+.+ +..+....|.|++|..... ..
T Consensus 97 ~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~~lr~t~~~~~~~e~~~l~~l~~~dLLIiDdlG~e~~t~~ 176 (242)
T PRK07952 97 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSETSEEQLLNDLSNVDLLVIDEIGVQTESRY 176 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHH
T ss_conf 71799789999789999999999998799499977999999999998068756999999863189898730146658888
Q ss_pred CCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCC-CC-CCCCEEEEEE-----EEECC
Q ss_conf 3100245415985873210478606871452899973886342-67-9841664689-----99658
Q gi|254781225|r 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RN-PDDAWWRRYI-----VIPFD 633 (789)
Q Consensus 574 ~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~-~~-~d~~~~rR~~-----iipF~ 633 (789)
....|=+ -|..|....+|. ++.||..+.- .. -++.++.|+. .|+|+
T Consensus 177 ~~~~lf~-----iId~Ry~~~kp~---------IitTNl~~~eL~~~lGeR~~dRl~~~~~~~l~f~ 229 (242)
T PRK07952 177 EKVIINQ-----IVDRRSSSKRPT---------GMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFN 229 (242)
T ss_pred HHHHHHH-----HHHHHHHCCCCE---------EEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 9999999-----999999716988---------9981799999999970899999972798599606
No 368
>TIGR01166 cbiO cobalt ABC transporter, ATP-binding protein; InterPro: IPR005876 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. This superfamily includes two groups, one which catalyses the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drives both the process of uptake and efflux.; GO: 0006824 cobalt ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=82.87 E-value=1.4 Score=21.58 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=44.2
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCC
Q ss_conf 43379999707886257899999997233000-344267642012455556898899738980999934677
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~ 569 (789)
..-..+-+.|+-+.|||||+..+.-+|=.... ....-.-+.- .+-.|.+.+-+-..++++|+.
T Consensus 16 ~~G~~~aLlG~NGaGKsTLl~~LnG~LrP~~G~v~~dG~~l~Y--------srkgL~~~R~~V~~VfQdPDD 79 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLRPQSGKVLLDGEPLDY--------SRKGLLEVRQRVGLVFQDPDD 79 (190)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCEECCC--------CCHHHHHHCCEEEEEEECHHH
T ss_conf 0571689872899857899887436777975558767854035--------724467525030037626344
No 369
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=82.79 E-value=1.2 Score=21.99 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=23.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 999970788625789999999723300
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
..++.|+.|.|||||++++..-+..|.
T Consensus 438 hT~I~G~tGaGKTvLl~~lla~~~k~~ 464 (796)
T COG3451 438 HTLIIGPTGAGKTVLLSFLLAQALKYG 464 (796)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 749988988878999999999998745
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=82.71 E-value=1.2 Score=22.01 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=18.1
Q ss_pred CCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 43379999707886257899999
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLI 521 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l 521 (789)
..-.+.-++|+-++|||||++.+
T Consensus 19 ~~G~~~aIiG~sGsGKSTLl~~~ 41 (261)
T cd03271 19 PLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
T ss_conf 89999999879998699999999
No 371
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.70 E-value=1.8 Score=20.79 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=19.5
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 37999970788625789999999723
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
....+++|+-|.||+.+++.|.-+..
T Consensus 21 ~~~n~i~G~NGsGKTnlLEAI~~ls~ 46 (270)
T cd03242 21 PGVTVLVGENAQGKTNLLEAISLLAT 46 (270)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99489999998878999999999817
No 372
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=82.64 E-value=1 Score=22.44 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=24.6
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 4337999970788625789999999723300
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
....++-+.|..|+||||+++++..+.-.+.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~ 527 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
T ss_conf 7998899987999988999999836788888
No 373
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=82.61 E-value=1 Score=22.49 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=24.6
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 7433799997078862578999999972330
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.+.--.+-+.|+-++|||||+++|..+....
T Consensus 286 v~~GEi~gl~G~nGsGKsTL~~~l~Gl~~~~ 316 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRA 316 (510)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 7488189997688862889999981988888
No 374
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=82.55 E-value=0.89 Score=22.87 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=21.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 79999707886257899999997233
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
-.+-+.|+-|.|||||+++|...+-.
T Consensus 339 eriaIvG~NGsGKSTLlk~L~G~l~p 364 (638)
T PRK10636 339 SRIGLLGRNGAGKSTLIKLLAGELAP 364 (638)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 47999747871388999997288788
No 375
>PRK05541 adenylylsulfate kinase; Provisional
Probab=82.49 E-value=1.9 Score=20.63 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=24.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 433799997078862578999999972330
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.....++++|-.++||||+.+.+..-|-..
T Consensus 5 ~kg~viW~TGLsGSGKTTiA~~l~~~L~~~ 34 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLK 34 (176)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 886799978999998999999999999975
No 376
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=82.41 E-value=1.1 Score=22.34 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=22.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+.--++-+.|.-++||||++++|..+.-.
T Consensus 272 ~~GEivgl~G~nGsGKsTL~~~l~Gl~~~ 300 (491)
T PRK10982 272 HKGEILGIAGLVGAKRTDIVETLFGIREK 300 (491)
T ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 68968997789999788999998198678
No 377
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=82.38 E-value=1.1 Score=22.25 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=50.8
Q ss_pred CCCCCCEEEECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 05797176607937974388855898655010013788887579478999998887999999999999999975987433
Q gi|254781225|r 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501 (789)
Q Consensus 422 ld~~~~ll~~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~ 501 (789)
....++-|+-++|.|+++.=.+.|+..+.+. - | +.|- ...+=++.++. .-
T Consensus 307 ~~~~~m~LP~P~G~L~vE~v~~~PP~~~~Ws---q----------P--------ivPk-----~~l~gi~F~~~----aG 356 (556)
T TIGR01842 307 SRAEAMALPEPEGHLSVENVTIVPPGGKKWS---Q----------P--------IVPK-----PTLRGISFAIQ----AG 356 (556)
T ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCCCCCC---C----------C--------CCCH-----HHHCCCCEEEC----CC
T ss_conf 8875457889863688877651078631357---8----------9--------7761-----42278621563----77
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCHHHHHH
Q ss_conf 7999970788625789999999723300-03442676420
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQ 540 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~~~~~~ 540 (789)
-++-++|+.++|||||.++|--+.-... ..-.+...+.+
T Consensus 357 e~laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~q 396 (556)
T TIGR01842 357 EALAIIGPSGSGKSTLARILVGIWPPASGSVRLDGADLKQ 396 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHHC
T ss_conf 4588874786525889878872101356533640334402
No 378
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=82.35 E-value=1.1 Score=22.33 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=11.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 999970788625789999999723
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
++-+.|+-|.||||++++|..++-
T Consensus 33 i~gllG~NGAGKTTllk~l~Gl~~ 56 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989999989999999967977
No 379
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.26 E-value=2.9 Score=19.42 Aligned_cols=10 Identities=10% Similarity=-0.011 Sum_probs=4.0
Q ss_pred CCCCCCHHHH
Q ss_conf 8558986550
Q gi|254781225|r 442 QKVKPTKELY 451 (789)
Q Consensus 442 ~~~~~~~~~~ 451 (789)
+-.||+-+..
T Consensus 353 ~GlpHR~E~V 362 (501)
T PRK02006 353 RGEPHRVEVI 362 (501)
T ss_pred CCCCCCEEEE
T ss_conf 7876525899
No 380
>KOG0979 consensus
Probab=82.23 E-value=1.3 Score=21.73 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 88125678999876418997699678896
Q gi|254781225|r 73 KDEKTANTFKDTFEILHGTPIVRIGQKPK 101 (789)
Q Consensus 73 ~d~~~~~~~~~~~~~l~g~p~~~~g~~~~ 101 (789)
+++.+...+...++-.+|.+|-..|++-+
T Consensus 50 pNGSGKSSiVcAIcLglgG~Pk~lGRak~ 78 (1072)
T KOG0979 50 PNGSGKSSIVCAICLGLGGKPKLLGRAKK 78 (1072)
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCHHH
T ss_conf 89897048899999972797443143557
No 381
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=82.22 E-value=1.2 Score=22.13 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=12.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 799997078862578999999972
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
-|+.++|+.+.||||++..|..+.
T Consensus 31 E~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 689998788886899999986665
No 382
>KOG0738 consensus
Probab=82.21 E-value=3 Score=19.41 Aligned_cols=252 Identities=14% Similarity=0.154 Sum_probs=114.1
Q ss_pred HHCCEECCCCCCCCCCHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 5010013788887579478999998887-999999999999999975987433799997078862578999999972330
Q gi|254781225|r 450 LYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 450 ~~~t~~~~~~y~~~a~~p~~~~~l~~~~-~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
+.++...++.++.-+.-.+-.+.|.+.+ ---.+-+| +-|-.+.=+-+.++|+.++||+.+...+..=-|..
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~--------F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEF--------FKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred HHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHH--------HHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf 8860599867676316499999999887544424888--------74244653000556799974789999998861672
Q ss_pred CCCCCCHHHHHHCCCCCCC---CCCHHHHHHCCCEEEEEECCCC--CCCCC----C--CEEEEEECCCEEEEEECCCCCC
Q ss_conf 0034426764201245555---6898899738980999934677--76013----1--0024541598587321047860
Q gi|254781225|r 529 YVINAEASDIMQNRPPEAG---KANPSLIRLMGSRIVIISETNE--NDEIN----A--AKIKQMTGGDCMTARLNYGNTY 597 (789)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~---~~~~~la~l~g~r~~~~~E~~~--~~~~~----~--~~~K~ltggD~i~ar~~~~~~~ 597 (789)
.-...+..+.++=|+ .|. .--|+||+.+---.++++|.+. +++-+ + -++|+=. -|.-.++. ..+
T Consensus 273 FFNVSsstltSKwRG-eSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsEL---LvQmDG~~-~t~ 347 (491)
T KOG0738 273 FFNVSSSTLTSKWRG-ESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSEL---LVQMDGVQ-GTL 347 (491)
T ss_pred EEEECHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHH---HHHHHCCC-CCC
T ss_conf 787402456555325-2699999999999874885353356778872579865036788888899---99863344-444
Q ss_pred EEEECCEEEEEECCCCCCCCCCCCCEEEEE---EEEECCCCCC--------------CCCCCHHHHHC-CCC---HHHHH
Q ss_conf 687145289997388634267984166468---9996588788--------------87878334220-120---44799
Q gi|254781225|r 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRY---IVIPFDKPIA--------------NRDASFAQKLE-TKY---TLEAK 656 (789)
Q Consensus 598 ~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~---~iipF~~~~~--------------~~d~~~~~~~~-~~e---~~~i~ 656 (789)
+-.....+.-+||. | -|-|+|+.||+ +.||.+..-. +.+.++ +++. +-| ...|-
T Consensus 348 -e~~k~VmVLAATN~-P--WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~-~~lae~~eGySGaDI~ 422 (491)
T KOG0738 348 -ENSKVVMVLAATNF-P--WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNL-EDLAERSEGYSGADIT 422 (491)
T ss_pred -CCCEEEEEEECCCC-C--CCHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHCCCCHHHHH
T ss_conf -56516999843689-8--20579999987630331287878999999976235668887569-9999985688737799
Q ss_pred HHHHHH----HHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHEEECCCCEECHHHHHHHHHHHHHHCC
Q ss_conf 999999----9999987889887889999999999842638888754326268841117999999999998504
Q gi|254781225|r 657 KWFLKG----VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726 (789)
Q Consensus 657 ~w~l~g----~~~~~~~g~~~~~p~~v~~a~~~y~~~~D~v~~fi~e~ce~~~~~~~~~~~l~~~y~~~~~~~~ 726 (789)
+-|=+. .++.+ .|+ .|..++....|--..-=....|=+-.-.+.+. +.. .....|..|+.+.|
T Consensus 423 nvCreAsm~~mRR~i-~g~---~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS--vs~-~d~~k~ekW~~efG 489 (491)
T KOG0738 423 NVCREASMMAMRRKI-AGL---TPREIRQLAKEEPKMPVTNEDFEEALRKVRPS--VSA-ADLEKYEKWMDEFG 489 (491)
T ss_pred HHHHHHHHHHHHHHH-HCC---CCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC--CCH-HHHHHHHHHHHHHC
T ss_conf 999999999999997-247---91776443231434565156599999970867--788-89999999998705
No 383
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=82.19 E-value=1.4 Score=21.62 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=21.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 433799997078862578999999972
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
..-..+-+.|+.|.||||++++|....
T Consensus 374 ~~Ge~vaIVG~SGsGKSTl~~LL~g~~ 400 (588)
T PRK11174 374 PAGQRVALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 499789998999864999999998728
No 384
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=82.08 E-value=2.3 Score=20.12 Aligned_cols=59 Identities=25% Similarity=0.240 Sum_probs=35.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 999970788625789999999723300034426764201245555689889973898099993467
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~ 568 (789)
-+=+.|..++||||+-..|..++.......-....+. +..+-++-.++..-=+++.||-
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~-------~~~~~~mrplR~~mQvVFQDPy 373 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDID-------GLSRKEMRPLRRRMQVVFQDPY 373 (534)
T ss_pred EEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCCC-------CCCHHHHHHHHHHCEEEEECCC
T ss_conf 6777705889811599999852476863897881166-------6485662035552269971787
No 385
>KOG0055 consensus
Probab=82.07 E-value=1.5 Score=21.36 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=17.2
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 337999970788625789999999723
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
.-+-+-+.|+.|+||||.+.+|+...-
T Consensus 1015 ~GqTvALVG~SGsGKSTvI~LLeRfYd 1041 (1228)
T KOG0055 1015 AGQTVALVGPSGSGKSTVISLLERFYD 1041 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 998899988998879989999998438
No 386
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=82.06 E-value=1 Score=22.45 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 799997078862578999999972330
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
-.+-+.|+-|.|||||+++|..++-..
T Consensus 346 e~ialvG~NGsGKSTLlk~l~G~l~p~ 372 (632)
T PRK11147 346 DKIALIGPNGCGKTTLLKLMLGQLQAD 372 (632)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 779998898842779999860666899
No 387
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=81.98 E-value=1.2 Score=22.12 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 79999707886257899999997233
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
-.+-+.|+-|.|||||+++|..++-.
T Consensus 351 e~iaivG~NGsGKSTLlk~l~G~~~p 376 (556)
T PRK11819 351 GIVGIIGPNGAGKSTLFKMITGQEQP 376 (556)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 24789889877588999998386568
No 388
>CHL00181 cbbX CbbX; Provisional
Probab=81.92 E-value=3 Score=19.34 Aligned_cols=102 Identities=22% Similarity=0.200 Sum_probs=53.1
Q ss_pred CHHHHHHHHHH-HCCCHHHHHHHHHHHHHHH-------CCCCCC--CEEEEEEECCCCCHHHHHHHHHHHHCCCCC----
Q ss_conf 94789999988-8799999999999999997-------598743--379999707886257899999997233000----
Q gi|254781225|r 465 PSQEFLDLVSG-YFESEEVMDYFTRCVGMAL-------LGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV---- 530 (789)
Q Consensus 465 ~~p~~~~~l~~-~~~d~e~~~~l~~~~g~~l-------~g~~~~--~~~~~~~G~G~nGKSt~~~~l~~llG~~~~---- 530 (789)
.-+..++-|++ ..|=+++.+.+.+++..+- .|.... -.-+++.|+.|+||+|...++..++-.-.+
T Consensus 13 ~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~Gl~~~~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g 92 (287)
T CHL00181 13 QIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRKNLGLVSSSPGLHMSFTGSPGTGKTTVALKMADILYRLGYIKKG 92 (287)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 49999999988646969999999999999999999998799988876538887899867999999999999986995589
Q ss_pred --CCCC-HHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECC
Q ss_conf --3442-676420124555568988997389809999346
Q gi|254781225|r 531 --INAE-ASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 (789)
Q Consensus 531 --~~~~-~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~ 567 (789)
...+ ..+..+.-+.+....+..+.+..|. ..+++|.
T Consensus 93 ~vve~~r~dLvg~yvG~Ta~kt~~~i~~a~GG-VLfIDEA 131 (287)
T CHL00181 93 HLITVTRDDLVGQYIGHTAPKTKEVLKKAMGG-VLFIDEA 131 (287)
T ss_pred EEEEECHHHHCCCCCCCCHHHHHHHHHHCCCC-EEEEECH
T ss_conf 58995358841635352169999999964598-7998244
No 389
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=81.78 E-value=1.3 Score=21.79 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=4.9
Q ss_pred HHCCCCCCCHHH
Q ss_conf 740357889789
Q gi|254781225|r 253 WSKQGSTYDEEN 264 (789)
Q Consensus 253 wS~~~~~y~~~~ 264 (789)
|+....+|.-++
T Consensus 146 W~LaPaTFSGGE 157 (235)
T COG4778 146 WSLAPATFSGGE 157 (235)
T ss_pred HCCCCCCCCCCH
T ss_conf 537986547730
No 390
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=81.78 E-value=2.1 Score=20.36 Aligned_cols=55 Identities=22% Similarity=0.224 Sum_probs=37.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEEC
Q ss_conf 9999707886257899999997233000344267642012455556898899738980999934
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E 566 (789)
-.++.|+.++|||||++.|..-+-.|. +....+..+++. ....+..|.+...+.+
T Consensus 448 HtlI~G~TGsGKTtl~~fL~aq~~ky~---~~~f~fDkd~~~------~i~~~a~GG~Y~~l~~ 502 (800)
T PRK13898 448 HTLIIGPTGAGKTVLMNFLCAQAMKFS---PRMFFFDKDRGA------EIFIRALNGVYTVIEP 502 (800)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHC---CEEEEEECCCCH------HHHHHHHCCEEEECCC
T ss_conf 569989999989999999999987548---879999799986------9999982988874379
No 391
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=81.72 E-value=3.1 Score=19.30 Aligned_cols=95 Identities=17% Similarity=0.249 Sum_probs=62.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCC-CCEEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCCHHHHHHCCCCCCCCCC
Q ss_conf 988879999999999999999759874-337999970788625789999999723300-034426764201245555689
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQNRPPEAGKAN 550 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~-~~~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~~~~~~~~~~~~~~~~~ 550 (789)
|.++.|-+++++-||-++-.+=...-. .| ++|+||.|=||+|+.++|.+=||..- +++.|...-.++- -
T Consensus 3 L~eFiGQ~~vk~~L~l~I~AAk~R~e~LDH--~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kPgDl-------a 73 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDH--LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDL-------A 73 (305)
T ss_pred CHHCCCCHHHHHHHHHHHHHHHHCCCCCCC--EEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHH-------H
T ss_conf 011058288999999999999824897341--6631756874678999999983893267406755475789-------9
Q ss_pred HHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf 88997389809999346777601310
Q gi|254781225|r 551 PSLIRLMGSRIVIISETNENDEINAA 576 (789)
Q Consensus 551 ~~la~l~g~r~~~~~E~~~~~~~~~~ 576 (789)
--|..|.-+=..+++|...=.+.-|.
T Consensus 74 aiLt~L~~gDVLFIDEIHRL~p~~EE 99 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPAIEE 99 (305)
T ss_pred HHHHHCCCCCEEECCHHHHCCHHHHH
T ss_conf 99970568963101256504833453
No 392
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=81.55 E-value=0.89 Score=22.87 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=44.1
Q ss_pred CCCCHHHCCCCCCE-EEECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCCHHHHHH-----HHHHHCCCHHHHHHHHH
Q ss_conf 12320220579717-6607937974388855898655010013788887579478999-----99888799999999999
Q gi|254781225|r 415 FSITSDLLDSSSRF-LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-----LVSGYFESEEVMDYFTR 488 (789)
Q Consensus 415 ~~~~~~~ld~~~~l-l~~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~-----~l~~~~~d~e~~~~l~~ 488 (789)
+.+.+.-|.||-.. |-+.-==+|++ -.++|+.|=+-.-.-..+| -|..+=-.+++..-|.+
T Consensus 173 LnIAEKRLPQDGRI~Lrv~Gr~~DiR-------------VSt~Pt~fGERvVMRLLDK~~~~l~L~~LGm~~~~l~~~~~ 239 (495)
T TIGR02533 173 LNIAEKRLPQDGRISLRVAGRDIDIR-------------VSTVPTSFGERVVMRLLDKDAVRLDLEALGMSPELLSSLER 239 (495)
T ss_pred CCHHHCCCCCCCCEEEEECCEEEEEE-------------EEECCCCCCCEEEHHHHCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 77232178998726666737446678-------------85305899710000011204777758864888889999999
Q ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHH
Q ss_conf 99999759874337999970788625789999
Q gi|254781225|r 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 (789)
Q Consensus 489 ~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~ 520 (789)
++. +-+=.+..+||.|+||||.+-.
T Consensus 240 li~-------rpHGIiLVTGPTGSGKtTTLYa 264 (495)
T TIGR02533 240 LIK-------RPHGIILVTGPTGSGKTTTLYA 264 (495)
T ss_pred HHH-------CCCCEEEECCCCCCCHHHHHHH
T ss_conf 971-------8896188417789852588999
No 393
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=81.55 E-value=1.3 Score=21.68 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=4.2
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999999759
Q gi|254781225|r 486 FTRCVGMALLG 496 (789)
Q Consensus 486 l~~~~g~~l~g 496 (789)
+.+.+.-||.|
T Consensus 248 ~~e~f~e~Lng 258 (261)
T COG4088 248 AEEVFRECLNG 258 (261)
T ss_pred HHHHHHHHHCC
T ss_conf 99999998565
No 394
>PRK13948 shikimate kinase; Provisional
Probab=81.52 E-value=1.8 Score=20.87 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=27.4
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 74337999970788625789999999723300
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
++.+.+++|+|--++||||+-..|...||-..
T Consensus 7 p~~~~~IvLIG~mGsGKStiGk~LA~~l~~~f 38 (182)
T PRK13948 7 PRPATFVALAGFMGTGKSRIGWELSRALALHF 38 (182)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 99998189889999988999999999969598
No 395
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=81.46 E-value=3.1 Score=19.23 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=5.5
Q ss_pred EEEECCCCCHHHHHHHH
Q ss_conf 99707886257899999
Q gi|254781225|r 505 HIRGVGGSGKSTLMNLI 521 (789)
Q Consensus 505 ~~~G~G~nGKSt~~~~l 521 (789)
+..++.+...-.+.|++
T Consensus 347 iAr~tpGfsGAdL~nl~ 363 (596)
T COG0465 347 IARGTPGFSGADLANLL 363 (596)
T ss_pred HHHHCCCCCCCHHHHHH
T ss_conf 86437785630676556
No 396
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=81.42 E-value=1.3 Score=21.79 Aligned_cols=55 Identities=25% Similarity=0.283 Sum_probs=33.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEE
Q ss_conf 9997078862578999999972330003-442676420124555568988997389809999
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVI-NAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~~-~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~ 564 (789)
.+++|+.++|||||++.|...+..|... ......+.++++. ..+.+..|.....+
T Consensus 429 t~I~G~TGsGKTtll~fL~aq~~ky~~~~~~~~~~fDkd~s~------~i~~~a~GG~y~~i 484 (789)
T PRK13853 429 TAIFGPIGRGKTTLMTFILAMLEQSMVDRAGAVVFFDKDRGG------ELLVRATGGTYLAL 484 (789)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH------HHHHHHHCCEEEEC
T ss_conf 488789999889999999999997422357708999588638------99999829877612
No 397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=81.37 E-value=2.6 Score=19.80 Aligned_cols=144 Identities=13% Similarity=0.179 Sum_probs=72.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHH----HHCCCCCCCC
Q ss_conf 988879999999999999999759874337999970788625789999999723300034426764----2012455556
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI----MQNRPPEAGK 548 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~----~~~~~~~~~~ 548 (789)
++++.|-+-++..|+-.+- .+ +-.-.+++.|+-|.||+|..+++.+.| |+. .+...= ..-..-+ .+
T Consensus 13 F~d~~GQ~~iv~tL~NAi~---~~--ri~HAYLF~GpRGtGKTS~ARIfAKaL---NC~-~~~~~PCn~C~~C~~i~-~g 82 (363)
T TIGR02397 13 FEDVIGQEHIVKTLKNAIK---NG--RIAHAYLFSGPRGTGKTSIARIFAKAL---NCQ-GPDGEPCNECESCKEIN-SG 82 (363)
T ss_pred CCCCCCCHHHHHHHHHHHH---HC--CCCCEEEECCCCCCCHHHHHHHHHHHH---CCC-CCCCCCCCCCCHHHHHH-CC
T ss_conf 1102351799999999997---18--966234502859976355899999986---588-78778777750227765-28
Q ss_pred CCHHHHHHCCCEEEEEECCCC---CCCC--CCCEEE--------EEECCCEEEEEECCCCCCEEEECCEEE-EEECCCCC
Q ss_conf 898899738980999934677---7601--310024--------541598587321047860687145289-99738863
Q gi|254781225|r 549 ANPSLIRLMGSRIVIISETNE---NDEI--NAAKIK--------QMTGGDCMTARLNYGNTYSESPASFTP-FIVPNKHL 614 (789)
Q Consensus 549 ~~~~la~l~g~r~~~~~E~~~---~~~~--~~~~~K--------~ltggD~i~ar~~~~~~~~~~~p~~~~-~~~~N~~P 614 (789)
.+.|+.++.++-=+-++|..+ .-.. ..++.| .||. ....| + =|. .|-+|.|.. ||+|-++=
T Consensus 83 ~~~DviEiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~-~AFNA--L-LKT-LEEPP~hV~FIlATTE~~ 157 (363)
T TIGR02397 83 SSLDVIEIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSK-SAFNA--L-LKT-LEEPPEHVVFILATTEPH 157 (363)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCH-HHHHH--H-HHH-HCCCCCCEEEEEECCCHH
T ss_conf 986668864865687889999987303687554433588732302865-68999--8-765-227987628887348711
Q ss_pred CCCCCCCCEEEEEEEEECCC
Q ss_conf 42679841664689996588
Q gi|254781225|r 615 FVRNPDDAWWRRYIVIPFDK 634 (789)
Q Consensus 615 ~~~~~d~~~~rR~~iipF~~ 634 (789)
+++.+ |--|---..|.+
T Consensus 158 KiP~T---IlSRCQrF~Fk~ 174 (363)
T TIGR02397 158 KIPAT---ILSRCQRFDFKR 174 (363)
T ss_pred HCCCC---CEEECEEECCCC
T ss_conf 20554---021000312678
No 398
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=81.32 E-value=1.7 Score=21.04 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 999707886257899999997233
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+++.|+.++||||....|..-+|=
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~~ 25 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL 25 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 899899999879999999999798
No 399
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=81.24 E-value=1.2 Score=21.90 Aligned_cols=12 Identities=0% Similarity=-0.003 Sum_probs=7.0
Q ss_pred HHHHHHHHHHCC
Q ss_conf 789999988879
Q gi|254781225|r 467 QEFLDLVSGYFE 478 (789)
Q Consensus 467 p~~~~~l~~~~~ 478 (789)
|.-.+|+...+.
T Consensus 235 ~~tk~li~~~~~ 246 (343)
T PRK11153 235 PLAQKFIQSTLH 246 (343)
T ss_pred HHHHHHCCCCCC
T ss_conf 799997088675
No 400
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=81.12 E-value=1.7 Score=20.97 Aligned_cols=30 Identities=33% Similarity=0.452 Sum_probs=23.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 337999970788625789999999723300
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
....+-+.|+.|+||||++++|..++-.+.
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~ 383 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTS 383 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 898788855888857899999986158888
No 401
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.98 E-value=1.4 Score=21.63 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=17.2
Q ss_pred EEEECCCCCCCC--CCCCCCCCCCCHHHHHHHHHC-CEEEEEC
Q ss_conf 977356778787--756545656898999742007-8899923
Q gi|254781225|r 20 LIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKLPAC-GFGFVCG 59 (789)
Q Consensus 20 viPi~pg~KrP~--~~~~w~~~~~~~~~i~~~~~~-giGi~~G 59 (789)
+-||.||+=|-. ..=+|.++.+ ..||.+ +=+++||
T Consensus 7 L~~i~~~~FRL~~iqliNWGTF~T-----~~~~~T~~G~LvTG 44 (1104)
T COG4913 7 LDPIHPGQFRLSRIQLINWGTFHT-----VDIPVTREGILVTG 44 (1104)
T ss_pred CCCCCCCCEEEEEEEEEECCCCCE-----EEEEEECCCEEEEC
T ss_conf 777789861466778850244312-----46667516457746
No 402
>PRK06696 uridine kinase; Validated
Probab=80.81 E-value=3.3 Score=19.09 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=23.8
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 337999970788625789999999723300
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
....+=+-|..++|||||.+-|...|+...
T Consensus 25 rpl~VgIdG~~gSGKTTlA~~La~~L~~~G 54 (227)
T PRK06696 25 RPLRVAIDGITASGKTTFANELAEEIKKRG 54 (227)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 868999778998787999999999997469
No 403
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=80.80 E-value=0.93 Score=22.75 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=27.0
Q ss_pred CCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECC--CCCC
Q ss_conf 310024541598587321047860687145289997388634267984166468999658--8788
Q gi|254781225|r 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIA 637 (789)
Q Consensus 574 ~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~--~~~~ 637 (789)
+...+--+-=|+.+++..+.++.- -. .-|+-.| ..+...|+-.--+|.||+ ..+.
T Consensus 365 ~s~~~~~~~fg~~f~v~~~~k~~~--~~---~~w~~~~----~~~ge~gwis~~~v~~~~~~~~i~ 421 (549)
T PRK13545 365 SSKRLAIANFGDIFTISDSNKNEK--KD---VEWIQIT----LSNGEIGWISTKFIEPFKSNNNII 421 (549)
T ss_pred CCCEEEEECCCCEEEEECCCCCCC--CC---CEEEEEE----ECCCCCCEEEEEEEEEECCCCCHH
T ss_conf 755158862797799805664311--58---6059998----248863302101566414686101
No 404
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=80.79 E-value=3.3 Score=19.08 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=36.9
Q ss_pred HHHHCCCHHHHHHHHHHHHHHH-------CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 9888799999999999999997-------59874337999970788625789999999723
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMAL-------LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l-------~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
++++.|-+.+++.|+..+...= +...+---.+++.|+-|.||+++...+...|-
T Consensus 4 f~~ivGQe~v~~~L~~A~~~~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~ 64 (395)
T PRK07940 4 WDRLVGQDAVVAELRAAARAARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQ 64 (395)
T ss_pred CHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 0131592999999999998363434433334687660376368998788999999999966
No 405
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=80.70 E-value=3.3 Score=19.07 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=24.0
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99999999975987433799997078862578999999972
Q gi|254781225|r 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 485 ~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
...+++..++ +.+..-..+=++|+.+.|||||++-+...+
T Consensus 34 ~~~~ll~~l~-~~~g~a~~iGiTG~pG~GKStli~~l~~~~ 73 (325)
T PRK09435 34 LAQELLDALL-PHTGNALRIGITGVPGVGKSTFIEALGMHL 73 (325)
T ss_pred HHHHHHHHHH-HCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999999863-017982599742799986889999999999
No 406
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=80.53 E-value=1.4 Score=21.55 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=18.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHH
Q ss_conf 7999970788625789999999
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKY 523 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ 523 (789)
.-++++|+++.|||||++-+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~ 27 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVG 27 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999988999999964
No 407
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein; InterPro: IPR013455 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Several bacterial species use the enzymes xylose isomerase and xylulokinase for xylose utilisation. This entry represents the ATP-binding cassette (ABC) subunit of the known, or predicted, high-affinity xylose ABC transporter used for xylose import. The genes encoding these proteins, which closely resemble other sugar transport ABC transporter genes, are typically found near xylose utilisation enzymes and regulatory proteins. .
Probab=80.52 E-value=1.2 Score=22.02 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=38.2
Q ss_pred CCCCCEEEEEEECCCC-CHHHHHHHHHHHHCCCCCCCCCHHHHHH-CCCCCCCCCCHHHHHHC------C-CEEEEEECC
Q ss_conf 8743379999707886-2578999999972330003442676420-12455556898899738------9-809999346
Q gi|254781225|r 497 GNKAQRFIHIRGVGGS-GKSTLMNLIKYAFGNQYVINAEASDIMQ-NRPPEAGKANPSLIRLM------G-SRIVIISET 567 (789)
Q Consensus 497 ~~~~~~~~~~~G~G~n-GKSt~~~~l~~llG~~~~~~~~~~~~~~-~~~~~~~~~~~~la~l~------g-~r~~~~~E~ 567 (789)
.+....+-|--=+|+| =|.++...|. ..+....++. .|+-+- +|..|+.+|. | +-.++.||.
T Consensus 394 kt~~P~LpI~~LSGGNQQKA~Lak~Ll--------~~P~~LILDEPTRG~Dv-GAKyEIYkL~~~La~~G~a~iv~SSEL 464 (501)
T TIGR02633 394 KTASPFLPIGRLSGGNQQKAVLAKMLL--------LNPRVLILDEPTRGVDV-GAKYEIYKLINQLAQEGVAIIVVSSEL 464 (501)
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHH--------CCCCEEEEECCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 322787542236773057999999874--------39948997478886103-640789999999984795899983431
Q ss_pred CCCCCCCCCEEEEEECCCEEEEEECC
Q ss_conf 77760131002454159858732104
Q gi|254781225|r 568 NENDEINAAKIKQMTGGDCMTARLNY 593 (789)
Q Consensus 568 ~~~~~~~~~~~K~ltggD~i~ar~~~ 593 (789)
.+---++. ++ -+.+...+.+.+.+
T Consensus 465 ~EVLG~sD-RV-LV~~eG~l~~~l~N 488 (501)
T TIGR02633 465 AEVLGLSD-RV-LVIGEGKLKADLVN 488 (501)
T ss_pred HHHCCCCC-EE-EEEECCEEEEEEEC
T ss_conf 00305522-37-88736778854203
No 408
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=80.46 E-value=1.9 Score=20.74 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 878899999999998426388887543
Q gi|254781225|r 674 DIPEVCLKAKEEERQGTDTYQAWIDDC 700 (789)
Q Consensus 674 ~~p~~v~~a~~~y~~~~D~v~~fi~e~ 700 (789)
+.|++|+.-.+.|++...||-.|-..+
T Consensus 175 D~~evv~~RL~~Y~~~t~Pli~yY~~~ 201 (232)
T TIGR01351 175 DTEEVVKKRLEVYKEQTEPLIDYYRKK 201 (232)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 988999999999888520089999846
No 409
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=80.33 E-value=1.1 Score=22.18 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 488889999999986
Q gi|254781225|r 223 NGSHDEWIPVVMAVH 237 (789)
Q Consensus 223 ~~dyd~W~~vg~al~ 237 (789)
.|+-...+.+|.||=
T Consensus 133 SGGEkQRVAIGRALL 147 (361)
T TIGR02142 133 SGGEKQRVAIGRALL 147 (361)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 784047788998874
No 410
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=80.30 E-value=1.5 Score=21.39 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHH----C---CEEEEECCCCCCEEEEEEECCCC------HHHHHHHHHHHHCCCC---CEEEECCC
Q ss_conf 689899974200----7---88999234779879999646881------2567899987641899---76996788
Q gi|254781225|r 40 LLSSEKIDKLPA----C---GFGFVCGVGEQPLYAFDIDSKDE------KTANTFKDTFEILHGT---PIVRIGQK 99 (789)
Q Consensus 40 ~~~~~~i~~~~~----~---giGi~~G~~s~glv~iDiD~~d~------~~~~~~~~~~~~l~g~---p~~~~g~~ 99 (789)
.+|.++++.|.. + -|-+=. +.=|+||.=++-- -....+..+++++.+. |.+++|++
T Consensus 6 gltA~~Lr~FfvhC~r~~vSDI~LqG----G~~i~V~r~GR~~~~s~fpL~~~~l~~l~D~lFg~ei~~~v~sg~~ 77 (374)
T TIGR02525 6 GLTADTLREFFVHCERHEVSDIHLQG----GSPIVVERHGRKVRASSFPLEDSELERLVDELFGPEIKPTVKSGRP 77 (374)
T ss_pred CCCHHHHHHHHHHHCCCCCCCEEECC----CCEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88988999886611168634035217----6855774446610134477850579998766507320010247875
No 411
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=80.24 E-value=1.3 Score=21.78 Aligned_cols=21 Identities=48% Similarity=0.700 Sum_probs=17.7
Q ss_pred EEECCCCCHHHHHHHHHHHHC
Q ss_conf 970788625789999999723
Q gi|254781225|r 506 IRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 506 ~~G~G~nGKSt~~~~l~~llG 526 (789)
++|+.+.|||||++-+...+-
T Consensus 4 itG~pGaGKStLi~~l~~~~~ 24 (148)
T cd03114 4 ITGVPGAGKSTLIDALITALR 24 (148)
T ss_pred ECCCCCCCHHHHHHHHHHHHH
T ss_conf 258997878999999999999
No 412
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=80.22 E-value=1.9 Score=20.72 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=76.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC-C--------CCCHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf 9997078862578999999972330003442676420124555-5--------689889973898099993467776013
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA-G--------KANPSLIRLMGSRIVIISETNENDEIN 574 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~-~--------~~~~~la~l~g~r~~~~~E~~~~~~~~ 574 (789)
+.|+||.|+||+-+..+|.+.|-=-.+.+-.+++++...-.+. . .+..+ .....|-.++++|.++=.+.+
T Consensus 155 ILLiGPTGSGKTLLAqTLA~~L~VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~D-V~kA~kGIiYIDEIDKIaRkS 233 (452)
T TIGR00382 155 ILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYD-VEKAQKGIIYIDEIDKIARKS 233 (452)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCC-HHHHCCCEEEEECCCCHHHHC
T ss_conf 2454688852689999999873887421111102006642422889999998741455-245278508984223101215
Q ss_pred CC---------------EEEEEECCCEEEE----EECC-CCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEE--E-EE
Q ss_conf 10---------------0245415985873----2104-78606871452899973886342679841664689--9-96
Q gi|254781225|r 575 AA---------------KIKQMTGGDCMTA----RLNY-GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI--V-IP 631 (789)
Q Consensus 575 ~~---------------~~K~ltggD~i~a----r~~~-~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~--i-ip 631 (789)
+. +||-+=|. -..+ =+|| .+.|++..-+-.||+++= .|.|-+.=+-+|+- + |=
T Consensus 234 EN~SITRDVSGEGVQQALLKi~EGT-vA~vPPqGGRKHP~~~~iqiDTs~ILFICGG---AF~GL~~iI~~R~~~~~~iG 309 (452)
T TIGR00382 234 ENPSITRDVSGEGVQQALLKIIEGT-VANVPPQGGRKHPQQEFIQIDTSNILFICGG---AFVGLEKIIKKRTEKKSSIG 309 (452)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHCC-EEEECCCCCCCCCCCCEEEECCCCEEEEECC---HHHHHHHHHHHHHCCCCCCC
T ss_conf 7780112217554999999876032-3431754488688657688647640011054---34448999988745553335
Q ss_pred CCCCCC
Q ss_conf 588788
Q gi|254781225|r 632 FDKPIA 637 (789)
Q Consensus 632 F~~~~~ 637 (789)
|.+.-.
T Consensus 310 F~~~~~ 315 (452)
T TIGR00382 310 FGAEVK 315 (452)
T ss_pred CCCCHH
T ss_conf 455210
No 413
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=80.18 E-value=2.9 Score=19.50 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9999999999999975987433799997078862578999999972
Q gi|254781225|r 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 480 ~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
+++++++.+... .+. =+.+.|..+.|||||+|.|..-.
T Consensus 114 ~~L~~~i~~~~~------~~~--~vyvvG~~NvGKSTLiN~Ll~~~ 151 (190)
T cd01855 114 EELINAIKKLAK------KGG--DVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred HHHHHHHHHHHC------CCC--CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 999999999746------698--57998058754679999986302
No 414
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=80.06 E-value=1.7 Score=21.06 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=18.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9999707886257899999997
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~l 524 (789)
.++++|+-..||||+++.+.-+
T Consensus 1 v~iiTGpN~sGKSt~lk~i~l~ 22 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLI 22 (185)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
T ss_conf 9899799988489999999999
No 415
>pfam10236 DAP3 Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=80.04 E-value=3.5 Score=18.92 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=9.2
Q ss_pred CCCCCCHHHHHHHHHHHCCC
Q ss_conf 16468999999999762001
Q gi|254781225|r 161 DTPLLSEEDVEYLFKFFQEI 180 (789)
Q Consensus 161 ~~P~i~~~~~~~l~~~~~~~ 180 (789)
+.|......++.+.+.....
T Consensus 81 dqP~~a~~~L~~~~~~N~~~ 100 (274)
T pfam10236 81 DQPMYAAALLQRILKANEEV 100 (274)
T ss_pred ECHHHHHHHHHHHHHHHHHH
T ss_conf 57899999999999986999
No 416
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=80.02 E-value=1.4 Score=21.58 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=24.4
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 7433799997078862578999999972330
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
.+.--++-+.|.-++|||||+++|..++-..
T Consensus 276 v~~GEivgivG~nGsGKSTL~k~L~Gl~~p~ 306 (501)
T PRK11288 276 VRRGEIVGFFGLVGAGRSELMKLLYGATRRT 306 (501)
T ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCCCCC
T ss_conf 7088399975688864879999843874887
No 417
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=79.98 E-value=1.5 Score=21.28 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=21.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 997078862578999999972330003
Q gi|254781225|r 505 HIRGVGGSGKSTLMNLIKYAFGNQYVI 531 (789)
Q Consensus 505 ~~~G~G~nGKSt~~~~l~~llG~~~~~ 531 (789)
-..|+.|.||||+.+.++.+||...+.
T Consensus 3 aVtGsSGAGtsTv~r~f~~IF~re~v~ 29 (277)
T cd02029 3 AVTGSSGAGTTTVKRAFEHIFAREGIH 29 (277)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 993388884787999999987205885
No 418
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=79.85 E-value=1.7 Score=21.08 Aligned_cols=11 Identities=64% Similarity=1.035 Sum_probs=3.5
Q ss_pred ECCCCCHHHHH
Q ss_conf 07886257899
Q gi|254781225|r 508 GVGGSGKSTLM 518 (789)
Q Consensus 508 G~G~nGKSt~~ 518 (789)
|+-+.||||++
T Consensus 34 GPNGAGKSTlL 44 (259)
T COG4559 34 GPNGAGKSTLL 44 (259)
T ss_pred CCCCCCHHHHH
T ss_conf 88986588899
No 419
>PRK02496 adk adenylate kinase; Provisional
Probab=79.81 E-value=2.4 Score=20.03 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=27.6
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 999987889887889999999999842638888754
Q gi|254781225|r 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699 (789)
Q Consensus 664 ~~~~~~g~~~~~p~~v~~a~~~y~~~~D~v~~fi~e 699 (789)
.|....|..-..++++..-.+.|.+...++-.|..+
T Consensus 123 ~Rl~~R~R~DD~~e~i~~Rl~~y~~~t~pvi~~y~~ 158 (185)
T PRK02496 123 ERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRD 158 (185)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998746767898899999999999999999999984
No 420
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=79.81 E-value=2.1 Score=20.38 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=14.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 9999707886257899999997233
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..+.-|.|+.||||+.--|..+||+
T Consensus 4 vAV~sGKGGtGKTTva~~la~~l~~ 28 (284)
T COG1149 4 VAVASGKGGTGKTTVAANLAVLLGD 28 (284)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9996368877702289999998366
No 421
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=79.79 E-value=1.3 Score=21.80 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=22.8
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 37999970788625789999999723300
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
-..+-++|+.|+||||++++|..++-...
T Consensus 491 Ge~vaIvG~sGsGKSTL~kll~Gl~~p~~ 519 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTE 519 (694)
T ss_pred CCEEEEEECCCCCHHHHHHHHCCCCCCCC
T ss_conf 97899980589878899998556758998
No 422
>KOG1051 consensus
Probab=79.71 E-value=3.6 Score=18.86 Aligned_cols=140 Identities=13% Similarity=0.163 Sum_probs=86.2
Q ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEEECCCCCHHHHHHHHHHH-HCCCC-CCCCCHHHHHH---
Q ss_conf 9999988-879999999999999999759874--3379999707886257899999997-23300-03442676420---
Q gi|254781225|r 469 FLDLVSG-YFESEEVMDYFTRCVGMALLGGNK--AQRFIHIRGVGGSGKSTLMNLIKYA-FGNQY-VINAEASDIMQ--- 540 (789)
Q Consensus 469 ~~~~l~~-~~~d~e~~~~l~~~~g~~l~g~~~--~~~~~~~~G~G~nGKSt~~~~l~~l-lG~~~-~~~~~~~~~~~--- 540 (789)
..+-|.+ |.+-.+.+.-+-+.+--|=.|..+ .-..|++.|+-+-||+-+...+... ||+.. ...++.+.+.+
T Consensus 556 L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051 556 LEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHH
T ss_conf 99999754466377899999999843203578888858999788841389999999999728864268961455555653
Q ss_pred -------CCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCC
Q ss_conf -------124555568988997389809999346777601310024541598587321047860687145289997388
Q gi|254781225|r 541 -------NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 (789)
Q Consensus 541 -------~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~ 612 (789)
-++.+.++.-.+-.+-+--..+.+.|.++-....-..|+++.-...+ ..-++.. +.|+.. .+||.+|-
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVvLfdeIEkAh~~v~n~llq~lD~Grl--tDs~Gr~-Vd~kN~-I~IMTsn~ 710 (898)
T KOG1051 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRL--TDSHGRE-VDFKNA-IFIMTSNV 710 (898)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCC--CCCCCCE-EECCCE-EEEEECCC
T ss_conf 048995554630577888997169965999830222288899999999862740--0588867-504645-99994263
No 423
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=79.64 E-value=3.6 Score=18.84 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=11.5
Q ss_pred CCCCCCHHHHHHHHHHHCCC
Q ss_conf 16468999999999762001
Q gi|254781225|r 161 DTPLLSEEDVEYLFKFFQEI 180 (789)
Q Consensus 161 ~~P~i~~~~~~~l~~~~~~~ 180 (789)
+.-.++..-..+|++.++++
T Consensus 127 Evhmls~~a~nallKtlEeP 146 (541)
T PRK05563 127 EVHMLSQGAVNAFLKTLEEP 146 (541)
T ss_pred CCCCCCHHHHHHHHHHHHCC
T ss_conf 72338999999999998548
No 424
>PRK03846 adenylylsulfate kinase; Provisional
Probab=79.61 E-value=2.6 Score=19.73 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=24.4
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 43379999707886257899999997233
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.....++++|-.++||||+.+.+...|-+
T Consensus 22 ~kg~viWlTGLSGSGKTTlA~~L~~~L~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 99869998799999889999999999997
No 425
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=79.57 E-value=1.1 Score=22.31 Aligned_cols=21 Identities=48% Similarity=0.681 Sum_probs=10.3
Q ss_pred EEEECCCCCHHHHHHHHHHHH
Q ss_conf 997078862578999999972
Q gi|254781225|r 505 HIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 505 ~~~G~G~nGKSt~~~~l~~ll 525 (789)
=++|.-++||||++++|..++
T Consensus 57 GiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 57 GIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred EEECCCCCCHHHHHHHHHCCC
T ss_conf 898789985899999995871
No 426
>KOG0061 consensus
Probab=79.49 E-value=1.5 Score=21.41 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHCCC-----------CCHHHHHHHHHH
Q ss_conf 99999999862167-----------815689999997
Q gi|254781225|r 228 EWIPVVMAVHHETR-----------GSSKGKEIARRW 253 (789)
Q Consensus 228 ~W~~vg~al~~~~~-----------~~~~~l~lw~~w 253 (789)
.-..+..+|++... .+.+.+.++|+-
T Consensus 205 sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l 241 (613)
T KOG0061 205 SALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKL 241 (613)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 6899999999998679989999768728999999899
No 427
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=79.43 E-value=2.2 Score=20.22 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=45.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 79999707886257899999997233000344267642012455556898899738980999934677760131002454
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~l 581 (789)
..+-++|.-++||||+.++++. +|= .+...+...- .--...+..-..++..+|.-+.- ++..++-..|.+.
T Consensus 3 ~iIglTG~igsGKStva~~~~~-~G~-~vidaD~v~r--~~~~~~~~~~~~i~~~fG~~i~~-----~dg~~~r~~L~~~ 73 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE-LGF-PVIDADDVAR--EVVEPGGEALQEIAERFGLEILD-----EDGGLDRRKLREK 73 (201)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCC-EEEECCHHHH--HHHHCCCHHHHHHHHHCCCCCCC-----CCCHHHHHHHHHH
T ss_conf 4999957887788999999997-799-3998869999--98845635789999984997656-----6510589999999
Q ss_pred ECCCEEE
Q ss_conf 1598587
Q gi|254781225|r 582 TGGDCMT 588 (789)
Q Consensus 582 tggD~i~ 588 (789)
.+.|+..
T Consensus 74 vf~~~~~ 80 (201)
T COG0237 74 VFNDPEA 80 (201)
T ss_pred HCCCHHH
T ss_conf 7389999
No 428
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.42 E-value=1.3 Score=21.86 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=6.0
Q ss_pred EEEEEECCCEEEEE
Q ss_conf 02454159858732
Q gi|254781225|r 577 KIKQMTGGDCMTAR 590 (789)
Q Consensus 577 ~~K~ltggD~i~ar 590 (789)
.||+|.|-|+-.+|
T Consensus 447 ~Fk~L~~~~~~~~~ 460 (468)
T PRK04690 447 HFAQLAGFDPAAIS 460 (468)
T ss_pred HHHHHHCCCHHHHH
T ss_conf 99998780877785
No 429
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=79.36 E-value=1.6 Score=21.16 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=17.4
Q ss_pred CCCCCCCEEEEEEECCCCCHHHH-HHHHHHHHC
Q ss_conf 59874337999970788625789-999999723
Q gi|254781225|r 495 LGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFG 526 (789)
Q Consensus 495 ~g~~~~~~~~~~~G~G~nGKSt~-~~~l~~llG 526 (789)
.-+++-++++++.-|.+.|=+.+ +.+|..+-.
T Consensus 129 ~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~ 161 (373)
T COG5019 129 FKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK 161 (373)
T ss_pred CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf 446824899998468988787888999999853
No 430
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=79.35 E-value=2.6 Score=19.82 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=22.2
Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 759874337999970788625789999999723
Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
+.+.+-.--.+=++|+++.|||||++.+-..|=
T Consensus 44 l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~ 76 (323)
T COG1703 44 LYPRTGNAHVIGITGVPGAGKSTLIEALGRELR 76 (323)
T ss_pred HHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 731179983787317998866889999999999
No 431
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=79.22 E-value=2.1 Score=20.39 Aligned_cols=29 Identities=45% Similarity=0.764 Sum_probs=25.7
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 37999970788625789999999723300
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
+.|-..+|+-++|||-+++.|+-+||..+
T Consensus 22 ~~~t~IvGpNGsGKSNi~DAi~~vlGe~s 50 (247)
T cd03275 22 DRFTCIIGPNGSGKSNLMDAISFVLGEKS 50 (247)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCH
T ss_conf 98379989987765888999999965662
No 432
>KOG0018 consensus
Probab=79.20 E-value=1.8 Score=20.82 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=26.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEE
Q ss_conf 99970788625789999999723300034426764201245555689889973898099993
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~ 565 (789)
.|.+-+-..+++...-+=..-+|.. +-+|+..+..+ ..+.-+-.+.|+|+++-.
T Consensus 533 aIiVdte~ta~~CI~ylKeqR~~~~--TFlPld~i~v~------~~~e~lr~~~g~rlv~Dv 586 (1141)
T KOG0018 533 AIIVDTEATARDCIQYLKEQRLEPM--TFLPLDSIRVK------PVNEKLRELGGVRLVIDV 586 (1141)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCC--CCCCHHHHHCC------CCCCCCCCCCCEEEEEEE
T ss_conf 2786327679999999998445874--23420666357------600012576780799873
No 433
>KOG0730 consensus
Probab=79.18 E-value=1.7 Score=20.93 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=66.3
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC---CCCHHHHHHCCCEEEEEECCCC--CCC
Q ss_conf 74337999970788625789999999723300034426764201245555---6898899738980999934677--760
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSRIVIISETNE--NDE 572 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~---~~~~~la~l~g~r~~~~~E~~~--~~~ 572 (789)
....+=+++||+++-||+++...+.+--|-...+..-..+++.--+ .|. ..-|..|+..---+++..|.+. +.+
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG-eSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R 543 (693)
T KOG0730 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG-ESERAIREVFRKARQVAPCIIFFDEIDALAGSR 543 (693)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHHHCC-CHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCC
T ss_conf 7887547777899862478999986463587264157899877518-258999999999862698377446666666304
Q ss_pred CCCCEEEEEECCCEEEEEECC-CCCCEEEECCEEEEEECCCCCCCCCCCCCEEE-----EEEEEECC
Q ss_conf 131002454159858732104-78606871452899973886342679841664-----68999658
Q gi|254781225|r 573 INAAKIKQMTGGDCMTARLNY-GNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-----RYIVIPFD 633 (789)
Q Consensus 573 ~~~~~~K~ltggD~i~ar~~~-~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~r-----R~~iipF~ 633 (789)
-..+. .-.|.+-..-+. -+.+ +-.-+..++-+|| .|.. -|.|+-| |++.||-+
T Consensus 544 ~g~~~----~v~~RVlsqLLtEmDG~-e~~k~V~ViAATN-Rpd~--ID~ALlRPGRlD~iiyVplP 602 (693)
T KOG0730 544 GGSSS----GVTDRVLSQLLTEMDGL-EALKNVLVIAATN-RPDM--IDPALLRPGRLDRIIYVPLP 602 (693)
T ss_pred CCCCC----CHHHHHHHHHHHHCCCC-CCCCCEEEEECCC-CHHH--CCHHHCCCCCCCEEEEECCC
T ss_conf 78755----14899999999870041-0147089995058-8101--26977598653305751583
No 434
>PRK00889 adenylylsulfate kinase; Provisional
Probab=79.14 E-value=2.6 Score=19.77 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=23.5
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 3799997078862578999999972330
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
-..++++|-.++||||+.+.+..-|-..
T Consensus 4 g~viWltGlsgSGKTTia~~l~~~L~~~ 31 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTISHALAEKLRAR 31 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 8899988989999999999999999986
No 435
>PRK08233 hypothetical protein; Provisional
Probab=79.11 E-value=2.8 Score=19.55 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=22.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 799997078862578999999972330003
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~~~ 531 (789)
..+-.-|..++||||+.+.|..-++...+.
T Consensus 4 ~IIgIaGgSgSGKTtla~~l~~~l~~~~~~ 33 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKAL 33 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 899996888678999999999974677589
No 436
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=78.90 E-value=2.4 Score=20.05 Aligned_cols=24 Identities=42% Similarity=0.509 Sum_probs=18.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 433799997078862578999999
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIK 522 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~ 522 (789)
..-.++.+.|+-++|||||++.+.
T Consensus 19 ~~Ge~~~iiG~nGsGKSTLl~~~~ 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 899899999999998999999888
No 437
>PRK13409 putative ATPase RIL; Provisional
Probab=78.64 E-value=1.6 Score=21.26 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 3379999707886257899999997233
Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
.--.+-+.|+-|.|||||+++|..++-.
T Consensus 364 ~GEiigIvG~NGaGKTTLlKiLaG~lkP 391 (590)
T PRK13409 364 KGEVIGIVGPNGIGKTTFVKLLAGVLKP 391 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 4748999888888789999998288778
No 438
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=78.62 E-value=2.2 Score=20.28 Aligned_cols=13 Identities=54% Similarity=0.984 Sum_probs=4.4
Q ss_pred ECCCCCHHHHHHH
Q ss_conf 0788625789999
Q gi|254781225|r 508 GVGGSGKSTLMNL 520 (789)
Q Consensus 508 G~G~nGKSt~~~~ 520 (789)
|+-++||||++++
T Consensus 64 G~NGsGKTTLL~l 76 (257)
T COG1119 64 GPNGAGKTTLLSL 76 (257)
T ss_pred CCCCCCHHHHHHH
T ss_conf 8898778999999
No 439
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=78.51 E-value=2 Score=20.49 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 999707886257899999997233
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+.+-|.=|.||||+++.|...+|-
T Consensus 2 I~iEG~iGsGKSTl~~~L~~~~~~ 25 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGY 25 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 899888888899999999996699
No 440
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=78.44 E-value=3.9 Score=18.60 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 988879999999999999999759874337999970788625789999999
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789)
|++.--.++.++.+.+++. ..+=++++.|+.++||||++..+-.
T Consensus 59 L~~LG~~~~~~~~l~~~~~-------~~~GlilitGptGSGKtTtl~a~l~ 102 (264)
T cd01129 59 LEKLGLKPENLEIFRKLLE-------KPHGIILVTGPTGSGKTTTLYSALS 102 (264)
T ss_pred HHHHCCCHHHHHHHHHHHH-------CCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 8795799999999999970-------8998899978999977999999998
No 441
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=78.42 E-value=3.2 Score=19.15 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=25.4
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 379999707886257899999997233000
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789)
..+-+++|+-++|||+++..|.-.||..+.
T Consensus 21 p~lN~IiG~NGsGKSsIl~AI~lgLGgk~~ 50 (198)
T cd03276 21 PRVNFIVGNNGSGKSAILTALTIGLGGKAS 50 (198)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 982899889999889999999986388813
No 442
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=78.38 E-value=1.9 Score=20.71 Aligned_cols=70 Identities=23% Similarity=0.377 Sum_probs=45.0
Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 75987433799997078862578999999972330003442676420124555568988997389809999346777601
Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 (789)
Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~ 573 (789)
|-|+...-...-+||+|++||+++.=++. + . |.-.||..++++ ++ |. +
T Consensus 5 LgGGvE~G~iTQiYGp~G~GKTn~c~~~a-~-----------~-----------------a~~~Gk~v~YiD-TE-GG-L 52 (223)
T TIGR02237 5 LGGGVERGIITQIYGPPGSGKTNICLILA-V-----------N-----------------AARQGKKVVYID-TE-GG-L 52 (223)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHH-H-----------H-----------------HHHCCCCEEEEE-CC-CC-C
T ss_conf 05851203588987589986789999999-9-----------9-----------------986189589996-28-98-3
Q ss_pred CCCEEEEEECCCEEEEEECCCC
Q ss_conf 3100245415985873210478
Q gi|254781225|r 574 NAAKIKQMTGGDCMTARLNYGN 595 (789)
Q Consensus 574 ~~~~~K~ltggD~i~ar~~~~~ 595 (789)
+..+||+|.+.+.+.-+....+
T Consensus 53 S~ER~~q~~~~~~~D~e~~~~~ 74 (223)
T TIGR02237 53 SPERFKQIAEDRALDPERVLSN 74 (223)
T ss_pred HHHHHHHHHHCCCCCHHHHHCC
T ss_conf 2899999863058898888415
No 443
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=78.32 E-value=1.4 Score=21.57 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=31.0
Q ss_pred HHCCCCC-EEEECCCCCEEEEEEECCC---CC---C---CCCCCCCCCCCEEEECCCCEE-EECC
Q ss_conf 6418997-6996788965999950731---02---4---454444576753485268438-8047
Q gi|254781225|r 86 EILHGTP-IVRIGQKPKILIPFRMNKE---GI---K---KKKTTESTQGHLDILGCGQYF-VAYN 139 (789)
Q Consensus 86 ~~l~g~p-~~~~g~~~~~~~~yr~~~~---~~---~---~~~~~~~~~~~iEi~~~G~q~-V~~g 139 (789)
.+..+.| ++|+-|.++.-|+|-+..- .. + .+..-+-.+..++-=|+|=.. .+|+
T Consensus 67 ~~~l~~PfIaHV~K~~K~pHYYVvy~~~kn~l~IaDPDpTvg~TK~sK~~F~~EWTGi~i~i~p~ 131 (710)
T TIGR01193 67 DKNLPLPFIAHVIKEGKLPHYYVVYGVTKNSLLIADPDPTVGITKISKEDFEEEWTGIAIFIAPT 131 (710)
T ss_pred HCCCCCCEEEEEEECCCCCCEEEEEEEECCEEEEECCCCCCCCEEECHHHHCCCCCEEEEEEECC
T ss_conf 10799976999980785212378973333667882688697621123788403264057776378
No 444
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117 The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=78.31 E-value=4 Score=18.58 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=81.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf 99707886257899999997233000344267642012455556898899738980999934677760131002454159
Q gi|254781225|r 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 (789)
Q Consensus 505 ~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltgg 584 (789)
.++|..|.|||+|++.+.... + -.|. .|.+=|...+- .+|..+.||
T Consensus 493 ~~~g~sG~GKSf~~Q~~~~~~------------L-----------------~~G~-kv~viDvG~Sy----~KLC~~lgG 538 (900)
T TIGR02746 493 AVVGGSGAGKSFFMQELIVSV------------L-----------------SRGG-KVWVIDVGRSY----KKLCEMLGG 538 (900)
T ss_pred EEECCCCCCHHHHHHHHHHHH------------H-----------------HCCC-EEEEEEECCCH----HHHHHHHCC
T ss_conf 997288987168798999998------------5-----------------1798-48999607884----888765187
Q ss_pred CEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCC-CCCCCHHHHHC-CCCHHHHHH----H
Q ss_conf 85873210478606871452899973886342679841664689996588788-87878334220-120447999----9
Q gi|254781225|r 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDASFAQKLE-TKYTLEAKK----W 658 (789)
Q Consensus 585 D~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~-~~d~~~~~~~~-~~e~~~i~~----w 658 (789)
+.|..+.- ..+.+.|- + |+- |... |.-++.|+.... +-+-.-.+.+. .....|.++ =
T Consensus 539 ~Yie~~~e---~~i~LNPF-T------HL~-i~~A------~~~~~~~~~~~v~~i~Geqv~~~~~i~~~ia~MAGlDl~ 601 (900)
T TIGR02746 539 TYIEFSPE---STICLNPF-T------HLD-IEEA------RFDIIDFDGNNVTEIDGEQVDEIDQITALIALMAGLDLS 601 (900)
T ss_pred CEECCCCC---CCCCCCCC-C------CCC-CCCC------CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 12104667---76323874-4------466-0003------332267363467756740288999999999988446668
Q ss_pred HHHHHHHHHH------CCCCCCCCHHHHHHHHHHHH--HCCHHHHHHHHH-EEE-CCCCE---ECHHHHHHHHHHHHHHC
Q ss_conf 9999999998------78898878899999999998--426388887543-262-68841---11799999999999850
Q gi|254781225|r 659 FLKGVKAYIS------KGLDVDIPEVCLKAKEEERQ--GTDTYQAWIDDC-CDI-GENLW---EESHSLAKSYSEYREQE 725 (789)
Q Consensus 659 ~l~g~~~~~~------~g~~~~~p~~v~~a~~~y~~--~~D~v~~fi~e~-ce~-~~~~~---~~~~~l~~~y~~~~~~~ 725 (789)
.-.++-..++ .- .-++|+++-.+|.. ..|.|..++.+. +|. +.+.. ....+|...=.+||. .
T Consensus 602 P~~~l~~~q~lmaryCs~----l~~AI~~~W~~~g~~a~~tdV~~~L~~~~~e~~~~~~DGir~r~~~l~~~L~~Yt~-~ 676 (900)
T TIGR02746 602 PEGGLSDEQELMARYCSL----LEEAILAAWKEKGNEATITDVADALEQLRLEEEDSENDGIRPRIKDLGKLLNPYTS-N 676 (900)
T ss_pred CCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-C
T ss_conf 455678888999999999----99999999997122488489999998521331345688601689999987326424-8
Q ss_pred CCCCC
Q ss_conf 46675
Q gi|254781225|r 726 LNYDR 730 (789)
Q Consensus 726 ~~~~~ 730 (789)
|.|++
T Consensus 677 G~YG~ 681 (900)
T TIGR02746 677 GVYGR 681 (900)
T ss_pred CCCEE
T ss_conf 71201
No 445
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=78.31 E-value=1.8 Score=20.78 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=17.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 999707886257899999997233
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+.+.|..+-|||||+|.| +|.
T Consensus 4 VaivGrpNvGKSTLlN~L---~g~ 24 (143)
T pfam10662 4 IMLIGRSGCGKTTLTQAL---NGE 24 (143)
T ss_pred EEEECCCCCCHHHHHHHH---CCC
T ss_conf 999899999999999997---599
No 446
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=78.31 E-value=4 Score=18.58 Aligned_cols=202 Identities=18% Similarity=0.218 Sum_probs=105.8
Q ss_pred HHCCEECCCCCCCCCCHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 5010013788887579478999998887-----99999999999999997598743379999707886257899999997
Q gi|254781225|r 450 LYITKSTGTPFVEGEPSQEFLDLVSGYF-----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 450 ~~~t~~~~~~y~~~a~~p~~~~~l~~~~-----~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789)
.|+-+.+..+|........=++-..+++ |=+++.+-+.++++--..-.....-.+-|+||.|-||+.+.+-|...
T Consensus 294 nYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a 373 (782)
T COG0466 294 NYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA 373 (782)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 99999982887655421322999998744355671168999999999998614678857999789988701189999999
Q ss_pred HCCCCCC-CCCHHHHHHCCCCCCCCCCHHHHHHCCCE-----------------------EEEEECCCCCCCCCCCEEEE
Q ss_conf 2330003-44267642012455556898899738980-----------------------99993467776013100245
Q gi|254781225|r 525 FGNQYVI-NAEASDIMQNRPPEAGKANPSLIRLMGSR-----------------------IVIISETNENDEINAAKIKQ 580 (789)
Q Consensus 525 lG~~~~~-~~~~~~~~~~~~~~~~~~~~~la~l~g~r-----------------------~~~~~E~~~~~~~~~~~~K~ 580 (789)
+|..++- ++ |+.+ +-|.++|-| +...+|.++ ++.
T Consensus 374 l~RkfvR~sL-------------GGvr-DEAEIRGHRRTYIGaMPGrIiQ~mkka~~~NPv~LLDEIDK---m~s----- 431 (782)
T COG0466 374 LGRKFVRISL-------------GGVR-DEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDK---MGS----- 431 (782)
T ss_pred HCCCEEEEEC-------------CCCC-CHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECHHH---CCC-----
T ss_conf 5897799954-------------7654-27775355312335687289999998677687478640333---167-----
Q ss_pred EECCCEEEE---------EECCCCCCEE--EECCEEEEEE-CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHC
Q ss_conf 415985873---------2104786068--7145289997-388634267984166468999658878887878334220
Q gi|254781225|r 581 MTGGDCMTA---------RLNYGNTYSE--SPASFTPFIV-PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648 (789)
Q Consensus 581 ltggD~i~a---------r~~~~~~~~~--~~p~~~~~~~-~N~~P~~~~~d~~~~rR~~iipF~~~~~~~d~~~~~~~~ 648 (789)
=--||+-+| ...|.+.+.+ |...-.+|++ +|.+-.|+ ..+..||-+|....-..+
T Consensus 432 s~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP---~PLlDRMEiI~lsgYt~~---------- 498 (782)
T COG0466 432 SFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIP---APLLDRMEVIRLSGYTED---------- 498 (782)
T ss_pred CCCCCHHHHHHHHCCHHHCCCHHHCCCCCCCCHHHEEEEEECCCCCCCC---HHHHCCEEEEEECCCCHH----------
T ss_conf 7778868888862697656761222016766443258886037513298---678430305642688869----------
Q ss_pred CCCHHHHH-HHHHHHHHHHHHCCCCC---C-CCHHHHHHHHHHHHHC
Q ss_conf 12044799-99999999999878898---8-7889999999999842
Q gi|254781225|r 649 TKYTLEAK-KWFLKGVKAYISKGLDV---D-IPEVCLKAKEEERQGT 690 (789)
Q Consensus 649 ~~e~~~i~-~w~l~g~~~~~~~g~~~---~-~p~~v~~a~~~y~~~~ 690 (789)
|+..|. ++++ .+...++||+. . ..+++....+.|-+|+
T Consensus 499 --EKl~IAk~~Li--Pk~~~~~gL~~~el~i~d~ai~~iI~~YTREA 541 (782)
T COG0466 499 --EKLEIAKRHLI--PKQLKEHGLKKGELTITDEAIKDIIRYYTREA 541 (782)
T ss_pred --HHHHHHHHHCC--HHHHHHCCCCCCCEEECHHHHHHHHHHHHHHH
T ss_conf --99999998445--68999759982335565899999999876762
No 447
>TIGR00634 recN DNA repair protein RecN; InterPro: IPR004604 DNA repair protein RecN is thought to be DNA damage inducible and involved in recombinational processes. The N-terminal region of most of the bacterial RecN proteins sequenced to date contains an ATP/GTP binding domain within an SMC-like motif. SMC-like domains are involved in chromosomal scaffolding and segregation. It is possible that the function of RecN in homologous recombination is either structural or enzymatic or both. RecN may be involved in the proper positioning of the recombining segments of DNA, ensuring normal recombination. The observation that inactivation of this gene leads to a decreased transformation efficiency, as well as increased sensitivity to DNA-damaging agents, may be due to some defect in chromosomal partitioning or positioning during these recombination-dependent processes . The protein may function presynaptically to process double-stranded breaks to produce 3 single-stranded DNA intermediates during recombination. ; GO: 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination.
Probab=78.26 E-value=1.6 Score=21.22 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=69.8
Q ss_pred CCCCCCCCCHHHC----CCCCCEEEECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHH
Q ss_conf 1000012320220----579717660793797438885589865501001378888757947899999888799999999
Q gi|254781225|r 410 EAGSIFSITSDLL----DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY 485 (789)
Q Consensus 410 ~~~~~~~~~~~~l----d~~~~ll~~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~ 485 (789)
.+.|.+.+..+.- ..+|--+...||-.-=- +..=--.=+++|+-.++-+.-|-| ++=---|+-++
T Consensus 406 ~a~F~v~~~~~~~~~~~~~~~~a~~L~~g~~~r~-~~~G~D~V~F~fs~n~G~~~~PLa----------k~ASGGELSRv 474 (605)
T TIGR00634 406 KAEFTVELKTSLPSRNDEAPSVALALVSGAKARA-GAYGADQVEFLFSANTGEPVKPLA----------KVASGGELSRV 474 (605)
T ss_pred CEEEEEEEEECCCCCCCCCCCEEEEECCCCEEEC-CCCCCCEEEEEEECCCCCCCCCHH----------HHCCCCHHHHH
T ss_conf 1378998852353222357740566247850202-656743157864137878987535----------44366169999
Q ss_pred HHHHHHHHHCCC--CCCCEEE---EEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCE
Q ss_conf 999999997598--7433799---99707886257899999997233000344267642012455556898899738980
Q gi|254781225|r 486 FTRCVGMALLGG--NKAQRFI---HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560 (789)
Q Consensus 486 l~~~~g~~l~g~--~~~~~~~---~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r 560 (789)
+. .+-.+|.-. ..-+-++ |=.|.||--=....+.|..|=-..-+.. ++ |.|.+|..-.+.
T Consensus 475 ~L-AL~~~ls~~~~~~~~TliFDEvDvGvsG~~A~~ia~~L~~LS~~~QV~c-----vT---------Hlp~vAA~AD~h 539 (605)
T TIGR00634 475 ML-ALKVVLSSSDPAAVTTLIFDEVDVGVSGKTAQAIAKKLAQLSERKQVLC-----VT---------HLPQVAAHADAH 539 (605)
T ss_pred HH-HHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCEEE-----EC---------CCHHHHHHCCCC
T ss_conf 99-9998542346567871276316417646899999999999853095899-----81---------837989724881
Q ss_pred EEEEECCC-------CCCCCC-----CCEEEEEECC-CEEE
Q ss_conf 99993467-------776013-----1002454159-8587
Q gi|254781225|r 561 IVIISETN-------ENDEIN-----AAKIKQMTGG-DCMT 588 (789)
Q Consensus 561 ~~~~~E~~-------~~~~~~-----~~~~K~ltgg-D~i~ 588 (789)
|.+-.+.. .+-.++ ...++.|++. |.+.
T Consensus 540 ~~v~K~~~neniadPtnPqldeD~~T~~~v~~L~~~G~rV~ 580 (605)
T TIGR00634 540 LKVEKELLNENIADPTNPQLDEDGRTATRVRPLSSEGERVA 580 (605)
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCEEECHHCCCCHHH
T ss_conf 46775420011467788766787886200220000263689
No 448
>PTZ00088 adenylate kinase 1; Provisional
Probab=78.22 E-value=2.4 Score=20.04 Aligned_cols=28 Identities=7% Similarity=0.166 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHCCHHHHHHH-HHE
Q ss_conf 8788999999999984263888875-432
Q gi|254781225|r 674 DIPEVCLKAKEEERQGTDTYQAWID-DCC 701 (789)
Q Consensus 674 ~~p~~v~~a~~~y~~~~D~v~~fi~-e~c 701 (789)
..|++|+.-.+.|.+++-+|-.|.. +-|
T Consensus 172 D~~evI~~RL~~Y~~~T~PlidyYk~~k~ 200 (225)
T PTZ00088 172 DEEDIIAHRLDSYESDNIHIINFFKNEKC 200 (225)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999972189999981698
No 449
>KOG0652 consensus
Probab=78.19 E-value=4 Score=18.56 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=65.6
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC--CCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf 743379999707886257899999997233000--344267642012455556898899738980999934677760131
Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV--INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 (789)
Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~--~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~ 575 (789)
.+..+=+.+||+.+.||+.+...+..--....- +.+.+..+--..++..-.--|.||.-+--.++++.|.+. +.+
T Consensus 202 i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDA---IGt 278 (424)
T KOG0652 202 IRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDA---IGT 278 (424)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEECHHH---HCC
T ss_conf 88997227657999757799999987401068873264777665334188999999875334983899730023---233
Q ss_pred CEEEEEECCCEEEEEEC----C-CCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE---EEEECCCC
Q ss_conf 00245415985873210----4-7860687145289997388634267984166468---99965887
Q gi|254781225|r 576 AKIKQMTGGDCMTARLN----Y-GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY---IVIPFDKP 635 (789)
Q Consensus 576 ~~~K~ltggD~i~ar~~----~-~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~---~iipF~~~ 635 (789)
.++-+=..||.-.-|-+ + -+.|+ -.-..+++-+||..- --|.|+.|-= +-|+|+++
T Consensus 279 KRfDSek~GDREVQRTMLELLNQLDGFs-s~~~vKviAATNRvD---iLDPALlRSGRLDRKIEfP~P 342 (424)
T KOG0652 279 KRFDSEKAGDREVQRTMLELLNQLDGFS-SDDRVKVIAATNRVD---ILDPALLRSGRLDRKIEFPHP 342 (424)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCCEEEEEECCCCC---CCCHHHHHCCCCCCCCCCCCC
T ss_conf 4365312343899999999998604899-756267885216434---348888644664444348899
No 450
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=78.19 E-value=2.2 Score=20.32 Aligned_cols=24 Identities=42% Similarity=0.588 Sum_probs=20.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 999707886257899999997233
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
+.+.|+-++||||+.+.++..|+.
T Consensus 2 I~I~G~~gsGKsT~a~~l~~~l~~ 25 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGG 25 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 788368888725899999999589
No 451
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=78.18 E-value=1.9 Score=20.74 Aligned_cols=16 Identities=50% Similarity=0.733 Sum_probs=6.5
Q ss_pred EEEECCCCCHHHHHHH
Q ss_conf 9970788625789999
Q gi|254781225|r 505 HIRGVGGSGKSTLMNL 520 (789)
Q Consensus 505 ~~~G~G~nGKSt~~~~ 520 (789)
++.|+.+-|||||+|.
T Consensus 39 v~~G~SGVGKSTLiN~ 54 (161)
T pfam03193 39 VLAGQSGVGKSTLLNA 54 (161)
T ss_pred EEECCCCCCHHHHHHH
T ss_conf 9988999889999988
No 452
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=78.17 E-value=1.7 Score=21.00 Aligned_cols=23 Identities=13% Similarity=0.214 Sum_probs=11.8
Q ss_pred HHHCCCCCCCCCHHHHHH-HHHHH
Q ss_conf 210122111488889999-99998
Q gi|254781225|r 214 LSCFGEEFYNGSHDEWIP-VVMAV 236 (789)
Q Consensus 214 l~~~~~~~~~~dyd~W~~-vg~al 236 (789)
....+.++.++|+-.|+. ++-++
T Consensus 45 KMs~GiPL~DdDR~pWL~~l~~~~ 68 (175)
T TIGR01313 45 KMSRGIPLNDDDRWPWLKNLADAL 68 (175)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 731788887012043799999999
No 453
>KOG2203 consensus
Probab=78.14 E-value=3 Score=19.37 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=9.8
Q ss_pred CEEEEEEECCCC
Q ss_conf 879999646881
Q gi|254781225|r 64 PLYAFDIDSKDE 75 (789)
Q Consensus 64 glv~iDiD~~d~ 75 (789)
-+++.|+.+.|+
T Consensus 89 ~i~vmDvEGTDG 100 (772)
T KOG2203 89 CILVMDVEGTDG 100 (772)
T ss_pred CEEEEECCCCCC
T ss_conf 169996456875
No 454
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=78.07 E-value=1.9 Score=20.71 Aligned_cols=18 Identities=50% Similarity=0.756 Sum_probs=6.1
Q ss_pred EEECCCCCHHHHHHHHHH
Q ss_conf 970788625789999999
Q gi|254781225|r 506 IRGVGGSGKSTLMNLIKY 523 (789)
Q Consensus 506 ~~G~G~nGKSt~~~~l~~ 523 (789)
+.|+.+.||+|++|++..
T Consensus 36 ~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 36 VLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EECCCCCCHHHHHHHHHC
T ss_conf 976888657889999862
No 455
>PRK09862 putative ATP-dependent protease; Provisional
Probab=77.83 E-value=3.7 Score=18.73 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=76.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCCCH-------------HHH
Q ss_conf 9888799999999999999997598743379999707886257899999997233000-34426-------------764
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEA-------------SDI 538 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~~~-------------~~~ 538 (789)
+.++.|.+... +.+-.+..|.. -++++|+-+.|||.+.+-+..+|.+-.. ..+.. ..+
T Consensus 190 ~~dv~Gq~~ak----raleIAAAGgH----nlLl~GpPG~GKTMlA~rlp~ILPpLt~~e~lEv~~I~Svag~~~~~~~~ 261 (506)
T PRK09862 190 LSDVVGQEQGK----RGLEITAAGGH----NLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQW 261 (506)
T ss_pred HHHHCCCHHHH----HHHHHHHCCCC----CEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 56536979999----99999744688----65987699945989997751238998989999999999871898777754
Q ss_pred HHCCCC-------------CCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEE
Q ss_conf 201245-------------5556898899738980999934677760131002454159858732104786068714528
Q gi|254781225|r 539 MQNRPP-------------EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 (789)
Q Consensus 539 ~~~~~~-------------~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~ 605 (789)
...-+. .+..++|.-..|.+.-+.+.+|..+-.+---..|.+=.-...|+.-+..+ .++|+-.|.
T Consensus 262 ~~rPfR~PHHs~S~~aliGGG~~~~PGEISLAH~GVLFLDElpEF~r~vLe~LRqPLE~g~I~IsRa~~--~~~~PA~F~ 339 (506)
T PRK09862 262 RQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRA--KITYPARFQ 339 (506)
T ss_pred CCCCEECCCCCCCHHHHHCCCCCCCCCCEEECCCCEEEECCHHCCCHHHHHHHHHHHCCCEEEEEECCC--EEEECCHHH
T ss_conf 668503788765476663799999997222135757884550006888999877622477599996686--798615331
Q ss_pred EEEECCCCCCC
Q ss_conf 99973886342
Q gi|254781225|r 606 PFIVPNKHLFV 616 (789)
Q Consensus 606 ~~~~~N~~P~~ 616 (789)
|+.++|-=|-=
T Consensus 340 LVaAmNPCPCG 350 (506)
T PRK09862 340 LVAAMNPSPTG 350 (506)
T ss_pred HEHHCCCCCCC
T ss_conf 11103788888
No 456
>KOG2028 consensus
Probab=77.76 E-value=4.1 Score=18.48 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHH----CCCCCCCCCCHHH-HHHHHHHCCCCCCCC
Q ss_conf 179999999999985----0466755545256-899998635423331
Q gi|254781225|r 710 ESHSLAKSYSEYREQ----ELNYDRKRISTRT-VTLNLKQKGFIGGIK 752 (789)
Q Consensus 710 ~~~~l~~~y~~~~~~----~~~~~~~~~s~~~-~~~~l~~~g~~~~~~ 752 (789)
++-++|.+|..-... .+....-|+--|+ =+.-++++||-.|.|
T Consensus 469 KSievYra~~~vka~ls~~~~~~~~vPlHlRNAPTkLMkeLGY~KgYk 516 (554)
T KOG2028 469 KSIEVYRAYNAVKACLSNHQGPLPEVPLHLRNAPTKLMKELGYGKGYK 516 (554)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHCCCCCCC
T ss_conf 303999999999999743257888887303027378999837687755
No 457
>PRK00131 aroK shikimate kinase; Reviewed
Probab=77.74 E-value=2.5 Score=19.84 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=24.4
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 37999970788625789999999723300
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
..-+++.|.-++||||+...|...||-..
T Consensus 4 ~~nI~liG~~GsGKTtvgk~LA~~L~~~f 32 (175)
T PRK00131 4 GPNIVLIGMMGAGKSTIGRLLAKRLGYEF 32 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 98089888999998999999999959690
No 458
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=77.67 E-value=2 Score=20.59 Aligned_cols=26 Identities=42% Similarity=0.584 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 99997078862578999999972330
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
-+-++|+-+.|||||+++|...++..
T Consensus 350 rIaiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 350 RIAIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 89998999877899999985213567
No 459
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=77.64 E-value=1.7 Score=21.07 Aligned_cols=11 Identities=9% Similarity=0.486 Sum_probs=6.2
Q ss_pred CCCEEEEEECC
Q ss_conf 89809999346
Q gi|254781225|r 557 MGSRIVIISET 567 (789)
Q Consensus 557 ~g~r~~~~~E~ 567 (789)
.|++..+..-.
T Consensus 308 ~Ga~VMl~~Ni 318 (418)
T pfam05970 308 VGVPVMLLRNL 318 (418)
T ss_pred CCCEEEEEEEC
T ss_conf 79859999722
No 460
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=77.48 E-value=4.2 Score=18.42 Aligned_cols=53 Identities=17% Similarity=0.355 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
Q ss_conf 999999999999997598743379999707886257899999997233000344267642012455
Q gi|254781225|r 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 (789)
Q Consensus 480 ~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~ 545 (789)
...+.++.+.+. +.++++.|..|+||+-+++.|... | ..++++.-++..||..
T Consensus 125 KayR~~v~~~l~---------~~~~vl~G~TG~GKT~lL~~L~~~-G---~~viDLEglA~HRGS~ 177 (333)
T PRK11784 125 KAYRRFVIDTLE---------EPLVVLGGMTGSGKTRLLQALANA-G---AQVLDLEGLANHRGSS 177 (333)
T ss_pred HHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHHHC-C---CCEECHHHHHHCCCCC
T ss_conf 999999999854---------685998678887789999999975-9---9743389886325642
No 461
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=77.47 E-value=2.6 Score=19.81 Aligned_cols=57 Identities=25% Similarity=0.404 Sum_probs=34.1
Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 37999970788625789999999723300034426764201245555689889973898099993467
Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 (789)
Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~ 568 (789)
.+.+++.|+.+.||+|+.+.|..-..+....+.+- ++ |.+..| ...|+-..++++..
T Consensus 2 ~r~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~--TT--R~~r~g-------E~~G~dY~Fvs~~~ 58 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSH--TT--RPPRPG-------EVNGVDYHFVSREE 58 (184)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEE--EC--CCCCCC-------CCCCCEEEEEEHHH
T ss_conf 97799999999999999999986396450577876--72--799889-------99996369971799
No 462
>PRK00279 adk adenylate kinase; Reviewed
Probab=77.45 E-value=2.6 Score=19.75 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 878899999999998426388887543
Q gi|254781225|r 674 DIPEVCLKAKEEERQGTDTYQAWIDDC 700 (789)
Q Consensus 674 ~~p~~v~~a~~~y~~~~D~v~~fi~e~ 700 (789)
..++++..-.+.|+.+..+|-.|..+.
T Consensus 163 D~~e~i~~Rl~~y~~~t~pvi~~y~~~ 189 (215)
T PRK00279 163 DNEETVRKRLEVYHKQTAPLIDYYKKK 189 (215)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 869999999999999888999999817
No 463
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=77.41 E-value=1.9 Score=20.64 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=22.5
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4337999970788625789999999723
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
.....+=+.|..|.||||++.+|..+.-
T Consensus 1193 ~~GqkVaiVGrSGsGKSTii~lL~Rfyd 1220 (1467)
T PTZ00265 1193 DSKKTTAIVGETGSGKSTFMNLLLRFYD 1220 (1467)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7998899989999839999999997763
No 464
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=77.35 E-value=2.5 Score=19.90 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=20.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 9997078862578999999972330
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
++++|.-+.||||++.-+...|-+.
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~ 26 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSE 26 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 8997899988999999999999867
No 465
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=77.24 E-value=3.2 Score=19.18 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 79999707886257899999997233
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
..++++|-.++||||+.+.+..-|-.
T Consensus 3 ~viW~TGLsGsGKTTlA~~l~~~L~~ 28 (157)
T pfam01583 3 CTVWFTGLSGSGKSTIANALERKLFA 28 (157)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 89998898999999999999999997
No 466
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=77.24 E-value=2.2 Score=20.26 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=11.4
Q ss_pred EEEECCCCEEEECCCCCCCCC
Q ss_conf 348526843880477688887
Q gi|254781225|r 126 LDILGCGQYFVAYNIHPKTKK 146 (789)
Q Consensus 126 iEi~~~G~q~V~~gshp~Tg~ 146 (789)
++|.. |.-||++|-. .+|+
T Consensus 49 l~v~~-GeIfViMGLS-GSGK 67 (386)
T COG4175 49 LDVEE-GEIFVIMGLS-GSGK 67 (386)
T ss_pred EEECC-CEEEEEEECC-CCCH
T ss_conf 45458-7089999358-7878
No 467
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.13 E-value=1.5 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=7.7
Q ss_pred CCCCCHHHHHHHHHHHHC
Q ss_conf 788625789999999723
Q gi|254781225|r 509 VGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 509 ~G~nGKSt~~~~l~~llG 526 (789)
+|.|||||...++.++|.
T Consensus 95 TGTNGKsTtt~li~~iL~ 112 (401)
T PRK03815 95 SGTNGKTTTTQMLTHLLE 112 (401)
T ss_pred ECCCCHHHHHHHHHHHHH
T ss_conf 847777899999999998
No 468
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=76.99 E-value=4.3 Score=18.33 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=14.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 1646899999999976200124
Q gi|254781225|r 161 DTPLLSEEDVEYLFKFFQEITV 182 (789)
Q Consensus 161 ~~P~i~~~~~~~l~~~~~~~~~ 182 (789)
++=.++..-..++++.++++-+
T Consensus 125 Eah~Lt~~A~NALLKTLEEPP~ 146 (523)
T PRK08451 125 EVHMLTKEAFNALLKTLEEPPS 146 (523)
T ss_pred CCCCCCHHHHHHHHHHCCCCCC
T ss_conf 6030489999999997038987
No 469
>COG1159 Era GTPase [General function prediction only]
Probab=76.86 E-value=2.4 Score=20.06 Aligned_cols=17 Identities=53% Similarity=0.753 Sum_probs=6.9
Q ss_pred EEEEEECCCCCHHHHHH
Q ss_conf 99997078862578999
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMN 519 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~ 519 (789)
|+-+.|..+.|||||+|
T Consensus 8 fVaIiGrPNvGKSTLlN 24 (298)
T COG1159 8 FVAIIGRPNVGKSTLLN 24 (298)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99998699876899998
No 470
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=76.74 E-value=2.8 Score=19.56 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 9997078862578999999972
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ll 525 (789)
+++.|..+.|||||...|.+.+
T Consensus 3 v~i~G~~~sGKttl~~~L~~~~ 24 (122)
T pfam03205 3 VLVVGPKDSGKTTLIRKLLNYL 24 (122)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999489998999999999999
No 471
>KOG1969 consensus
Probab=76.57 E-value=2.8 Score=19.58 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=0.0
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 87433799997078862578999999972330003442676
Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 (789)
Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~ 537 (789)
....|++++|.|+.|-||+|+..+|.+=-| |.+.-...+.
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqaG-YsVvEINASD 361 (877)
T KOG1969 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQAG-YSVVEINASD 361 (877)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEECCCC
T ss_conf 798400687536887872479999998628-5488732555
No 472
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I; InterPro: IPR011775 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll . This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. It is also found in certain archaea not known to make chlorins.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0006779 porphyrin biosynthetic process.
Probab=76.43 E-value=2.6 Score=19.78 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf 999707886257899999997233
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGN 527 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~ 527 (789)
++..|.-|+||||.+..|..||..
T Consensus 28 VmvmGdRGTgKSTavRALAalLP~ 51 (340)
T TIGR02030 28 VMVMGDRGTGKSTAVRALAALLPE 51 (340)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 888677898356899999974994
No 473
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.42 E-value=2.5 Score=19.88 Aligned_cols=20 Identities=50% Similarity=0.519 Sum_probs=0.0
Q ss_pred EEEEEECCCCCHHHHHHHHH
Q ss_conf 99997078862578999999
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789)
...+.||-++||||+..+|.
T Consensus 32 vhaiMGPNGsGKSTLa~~i~ 51 (251)
T COG0396 32 VHAIMGPNGSGKSTLAYTIM 51 (251)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998899878899999972
No 474
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=76.41 E-value=3.7 Score=18.80 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=0.0
Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 75987433799997078862578999999972
Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
+...+..-.-+=++|+.+.|||||++.+...+
T Consensus 22 ~~~~~g~a~~iGiTG~PGaGKStli~~l~~~~ 53 (267)
T pfam03308 22 LMPLTGRAHRVGITGVPGAGKSTLIEALGMEL 53 (267)
T ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87435995599876899887999999999999
No 475
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=76.39 E-value=2.2 Score=20.25 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 799997078862578999999972330
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789)
....+.|+.|.||||++++|...+-.+
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~~~~~ 374 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGFLAPT 374 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 679998899997899999984757777
No 476
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=76.37 E-value=1.5 Score=21.35 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=0.0
Q ss_pred EEECCCCCHHHHHHHHHHH---HCCCCCCCCCHHH
Q ss_conf 9707886257899999997---2330003442676
Q gi|254781225|r 506 IRGVGGSGKSTLMNLIKYA---FGNQYVINAEASD 537 (789)
Q Consensus 506 ~~G~G~nGKSt~~~~l~~l---lG~~~~~~~~~~~ 537 (789)
|+|=.+.|||||++.|++. +.+|-=+++.+.+
T Consensus 163 LvGfPNAGKSTLLs~~S~AkPKiAdYPFTTL~P~L 197 (296)
T TIGR02729 163 LVGFPNAGKSTLLSAISNAKPKIADYPFTTLEPNL 197 (296)
T ss_pred EECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCE
T ss_conf 03578874688888876278822387874565311
No 477
>PRK04040 adenylate kinase; Provisional
Probab=76.36 E-value=3.9 Score=18.61 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHC-CCCCCCCCHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 7999970788625789999999723-300034426764201245555689889973
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQNRPPEAGKANPSLIRL 556 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG-~~~~~~~~~~~~~~~~~~~~~~~~~~la~l 556 (789)
+.++++|..|.||||+++.+...+. +|-+.+-...++..-.....-..+.+|-.|
T Consensus 3 k~VvvtGiPGvGKTTv~~~~~~~l~~~~~~vn~G~~M~e~A~~~glv~~RDemRkL 58 (189)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL 58 (189)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 18999758988789999999997235875986779999999981773477887479
No 478
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=76.34 E-value=3.3 Score=19.11 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=0.0
Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 7598743379999707886257899999
Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 (789)
Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l 521 (789)
++.....--|+-+.|..+.|||||+|.|
T Consensus 1 ~~~~~~ksG~VaivG~PNvGKSTL~N~l 28 (296)
T PRK00089 1 MSPEKFKSGFVAIVGRPNVGKSTLLNAL 28 (296)
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 9988983799999989998889999999
No 479
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=76.31 E-value=2 Score=20.54 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=0.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99997078862578999999972
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
++-+.|+-|.||||++..+..++
T Consensus 31 ~~aiiG~SGsGKStl~k~llgll 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999878999999995799
No 480
>KOG3347 consensus
Probab=76.30 E-value=2.6 Score=19.82 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 99970788625789999999723
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG 526 (789)
++++|+.|.|||||..-|...+|
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347 10 ILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 79867999880259999999739
No 481
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=76.25 E-value=2.8 Score=19.56 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=0.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9999707886257899999997
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYA 524 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~l 524 (789)
.+-++|+.++|||||+.-|.-+
T Consensus 34 VisIIGsSGSGKSTfLRCiN~L 55 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFL 55 (256)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999658998626899999863
No 482
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=76.22 E-value=1.3 Score=21.79 Aligned_cols=17 Identities=41% Similarity=0.780 Sum_probs=0.0
Q ss_pred EEECCCCCHHHHHHHHH
Q ss_conf 97078862578999999
Q gi|254781225|r 506 IRGVGGSGKSTLMNLIK 522 (789)
Q Consensus 506 ~~G~G~nGKSt~~~~l~ 522 (789)
|.|+.|.||||++.+|.
T Consensus 1 LLGpSGcGKTTlLrlLA 17 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLA 17 (331)
T ss_pred CCCCCCCCHHHHHHHHH
T ss_conf 97888874799999983
No 483
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=76.18 E-value=3.4 Score=18.98 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEE-CCCCCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 99999999999999759874337999970-788625789999999723300034426
Q gi|254781225|r 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEA 535 (789)
Q Consensus 480 ~e~~~~l~~~~g~~l~g~~~~~~~~~~~G-~G~nGKSt~~~~l~~llG~~~~~~~~~ 535 (789)
++.+..++++..|..-..... ++| +|.|||+|.-+++..+|..........
T Consensus 81 ~d~~~al~~la~~~~~~~~~~-----vIgITGSnGKTTtk~~i~~iL~~~g~~~~t~ 132 (452)
T PRK10773 81 KDTRLAFGQLAAWVRQQVPAR-----VVALTGSSGKTSVKEMTAAILSQCGNTLYTA 132 (452)
T ss_pred CCHHHHHHHHHHHHHHCCCCC-----EEEEEECCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999875159975-----8999916996259999999999728841245
No 484
>PRK13946 shikimate kinase; Provisional
Probab=76.14 E-value=3 Score=19.35 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 99970788625789999999723
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG 526 (789)
++|+|--+.||||+-..|...||
T Consensus 23 IvLIG~mGsGKStvGk~LA~~L~ 45 (195)
T PRK13946 23 VVLVGLMGAGKSTVGRRLATMLG 45 (195)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89989999988999999999979
No 485
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.13 E-value=2.8 Score=19.55 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=0.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999707886257899999997233000344
Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 (789)
Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~ 533 (789)
|-+++|..|.|||.+++.|.-++|..+.++.
T Consensus 24 ltVlTGETGAGKSIiidAl~lllG~ra~~~~ 54 (557)
T COG0497 24 LTVLTGETGAGKSIIIDALGLLLGGRADASL 54 (557)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCH
T ss_conf 5686568887566799899997278778112
No 486
>KOG0991 consensus
Probab=76.10 E-value=4.5 Score=18.18 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHH-HHHHHHHHCCCCCCCCCHHHHHHCCC
Q ss_conf 988879999999999999999759874337999970788625789-99999972330003442676420124
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRP 543 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~-~~~l~~llG~~~~~~~~~~~~~~~~~ 543 (789)
|.+|+|+++.++.++-+.---=.++ +++.|+.+.||+|- +-+.+.+||+.+.-.+-...-+..|+
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~------liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG 91 (333)
T KOG0991 26 LQDIVGNEDTVERLSVIAKEGNMPN------LIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG 91 (333)
T ss_pred HHHHHCCHHHHHHHHHHHHCCCCCC------EEEECCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
T ss_conf 9882177989999999997289986------67527999861648999999983806665763205765546
No 487
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.99 E-value=1.8 Score=20.84 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 78862578999999972
Q gi|254781225|r 509 VGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 509 ~G~nGKSt~~~~l~~ll 525 (789)
+|.|||||...+|.++|
T Consensus 129 TGTnGKTTTtsli~~iL 145 (476)
T PRK00141 129 TGTNGKTTTTAMLAAMM 145 (476)
T ss_pred ECCCCHHHHHHHHHHHH
T ss_conf 68996798999999999
No 488
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=75.99 E-value=4.6 Score=18.16 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 98887999999999999999975987433799997078862578999999972
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
+.++.|-+.++..|+..+. ..+..-.++++|+-|.||.|+...+...|
T Consensus 15 F~eIIGQe~iv~~L~nAI~-----~~RiaHAYLFsGPrGvGKTTlArifAkaL 62 (613)
T PRK05896 15 FKQIIGQELIKKILVNAIL-----NNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (613)
T ss_pred HHHHCCCHHHHHHHHHHHH-----CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6552382999999999998-----49976227755899848899999999996
No 489
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=75.90 E-value=2.3 Score=20.08 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCHHHHHHHH
Q ss_conf 79999707886257899999
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLI 521 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l 521 (789)
+..++.|+.|-|||||+|.|
T Consensus 162 k~~v~~G~SGvGKSSLiN~L 181 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINAL 181 (287)
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 88999889988889999874
No 490
>PRK08727 hypothetical protein; Validated
Probab=75.87 E-value=4.6 Score=18.14 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred HCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 01001378888757947899999888799999999999999997598743379999707886257899999997233000
Q gi|254781225|r 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789)
Q Consensus 451 ~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789)
+...+++.+...... +.|+.|+ .+.......++...- ....-+++++|+.|+|||-++..+++.......
T Consensus 1 m~~~QLpL~l~~~~~-~tfdnFi---~~~n~~~a~l~~~~~------~~~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~~ 70 (233)
T PRK08727 1 MSVPQLPLALRAPSD-QRFDSYI---AAPDGLLAQLQALAA------GQSSDWLYLSGPAGTGKTHLALSLCAAAEQAGR 70 (233)
T ss_pred CCCCCCCCCCCCCCC-CCHHHCC---CCCHHHHHHHHHHHC------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 980104788999972-2421206---785599999998743------888898999899999889999999999982799
Q ss_pred CCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf 34426764201245555689889973898099993467
Q gi|254781225|r 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 (789)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~ 568 (789)
...-..+-.... .....+..+...-++++.+.+
T Consensus 71 ~~~yl~l~~~~~-----~~~~~l~~le~~~ll~iDDid 103 (233)
T PRK08727 71 SSAYLPLQAAAG-----RLRDALEALEGRSLVALDGVD 103 (233)
T ss_pred CEEEEEHHHHHH-----HHHHHHHHHCCCCEEEEECCH
T ss_conf 728844788532-----025677531038978985501
No 491
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=75.78 E-value=3.2 Score=19.17 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=0.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 4337999970788625789999999723
Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789)
..++-++|+|.-+.||||+...|...||
T Consensus 2 ~~kknI~LiG~mGsGKstvgk~LA~~l~ 29 (172)
T PRK05057 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9888289889999988999999999969
No 492
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=75.64 E-value=3.2 Score=19.21 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 99970788625789999999723
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFG 526 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG 526 (789)
++|+|--+.||||+...+...+|
T Consensus 2 I~LiG~~G~GKstigk~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999979
No 493
>pfam00350 Dynamin_N Dynamin family.
Probab=75.58 E-value=2 Score=20.60 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHH
Q ss_conf 999707886257899999
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLI 521 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l 521 (789)
+.+.|.-++|||+|+|.|
T Consensus 1 ivvvG~~ssGKSSliNAL 18 (168)
T pfam00350 1 IAVVGDQSAGKSSVLNAL 18 (168)
T ss_pred CEEECCCCCCHHHHHHHH
T ss_conf 989917889899999999
No 494
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=75.49 E-value=3.7 Score=18.78 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 799997078862578999999972
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
++++++|..++||||+.+.|+..|
T Consensus 444 ~~iw~tGlsgsGKstiA~~le~~L 467 (613)
T PRK05506 444 ATVWFTGLSGSGKSTIANLVERRL 467 (613)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699997789897479999999999
No 495
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=75.39 E-value=2.7 Score=19.72 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHH
Q ss_conf 9997078862578999999
Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789)
Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789)
+.+.|..+.|||||+|.|.
T Consensus 4 ValvG~pN~GKStL~N~l~ 22 (157)
T cd04164 4 VVIVGKPNVGKSSLLNALA 22 (157)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998899998999999996
No 496
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=75.34 E-value=2.4 Score=20.02 Aligned_cols=20 Identities=45% Similarity=0.688 Sum_probs=0.0
Q ss_pred EEECCCCCHHHHHHHHHHHH
Q ss_conf 97078862578999999972
Q gi|254781225|r 506 IRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 506 ~~G~G~nGKSt~~~~l~~ll 525 (789)
++|..|-|||||++-+...|
T Consensus 43 ~TG~PGaGKSTl~~~l~~~l 62 (333)
T TIGR00750 43 ITGVPGAGKSTLVEKLIMEL 62 (333)
T ss_pred EECCCCCCHHHHHHHHHHHH
T ss_conf 64688885777999998999
No 497
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.27 E-value=1.8 Score=20.77 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 78862578999999972
Q gi|254781225|r 509 VGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 509 ~G~nGKSt~~~~l~~ll 525 (789)
+|.|||||...+|.++|
T Consensus 115 TGTnGKTTTt~ll~~iL 131 (459)
T PRK02705 115 TGTNGKTTVTHLLAHIL 131 (459)
T ss_pred ECCCCCHHHHHHHHHHH
T ss_conf 17897278999999999
No 498
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=75.21 E-value=2.5 Score=19.86 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCHHHHHHHH
Q ss_conf 79999707886257899999
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLI 521 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l 521 (789)
+-.++.|+.+-|||||+|.|
T Consensus 195 kT~vl~G~SGVGKSTLiN~L 214 (353)
T PRK01889 195 KTVALLGSSGVGKSTLVNAL 214 (353)
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 78999778886699999875
No 499
>PRK06547 hypothetical protein; Provisional
Probab=75.20 E-value=3.9 Score=18.60 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 799997078862578999999972330003442
Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 (789)
Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~ 534 (789)
.++-+=|++++|||||.+-|...+..-.+...+
T Consensus 16 ~iVaIDG~sGaGKTTLA~~La~~~~~~~vvHmD 48 (184)
T PRK06547 16 ITVLIDGRSGSGKTTLAGELAACWEGSQLVHLD 48 (184)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 999986899888899999999745798289705
No 500
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.20 E-value=2 Score=20.58 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 78862578999999972
Q gi|254781225|r 509 VGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 509 ~G~nGKSt~~~~l~~ll 525 (789)
+|.|||||...+|.++|
T Consensus 120 TGTnGKTTTtsli~~iL 136 (457)
T PRK01390 120 TGTNGKSTTTALIAHLL 136 (457)
T ss_pred ECCCCHHHHHHHHHHHH
T ss_conf 28996498999999999
Done!