HHsearch alignment for GI: 254781225 and conserved domain: pfam08706

>pfam08706 D5_N D5 N terminal like. This domain is found in D5 proteins of DNA viruses and bacteriophage P4 DNA primases phages.
Probab=99.86  E-value=1.2e-20  Score=154.87  Aligned_cols=143  Identities=19%  Similarity=0.192  Sum_probs=94.3

Q ss_pred             HHHHHCCCEEEEEEECCEEEEECCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             99870898399996178146860880577413122013445899999999999998654101230148899875687776
Q gi|254781225|r  315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ  394 (789)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~wy~~~~~~~~~~~g~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (789)
T Consensus         3 ~~~~~~~~~l~y~~~~~~W~~--------~~g~~W~~d~~~-~v~~~~~~~~~~~~~~~~~------~~-~~~~~~---~   63 (145)
T pfam08706         3 RLADRYGKDLRYVPGTGGWYV--------WDGKRWEEDSKK-AIRELADKLLRLILEEAEA------AK-ELRKFA---K   63 (145)
T ss_pred             HHHHHHCCEEEEECCCCCEEE--------ECCCEEEECCHH-HHHHHHHHHHHHHHHHHHH------HH-HHHHHH---H
T ss_conf             899983993899778792899--------789894168588-9999999999999999999------99-999999---9


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHH
Q ss_conf             20002679999874110000123202205797176607937974388855898655010013788887579478999998
Q gi|254781225|r  395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS  474 (789)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~ll~~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~  474 (789)
T Consensus        64 ~~~~~~~i~~~~~~~~~~--~~~~~~~~D~~p~ll~~~NGv~DL~tg~l~~h~p~~~~T~~~~v~y~p~a~~p~~~~fL~  141 (145)
T pfam08706        64 RSRSKSGVKNVLREAKAM--LDVTLDELDADPYLLNFPNGVLDLRTGELRPHDPEDRLTKITPVDYDPDADCPLWKQFLE  141 (145)
T ss_pred             HHCCHHHHHHHHHHHHHH--CCCCHHHHCCCCCEECCCCEEEECCCCCCCCCCHHHHEEECCCCCCCCCCCCHHHHHHHH
T ss_conf             850677899999984042--367988946997873799858989899578899778154425878898998878999999


Q ss_pred             HHCC
Q ss_conf             8879
Q gi|254781225|r  475 GYFE  478 (789)
Q Consensus       475 ~~~~  478 (789)
T Consensus       142 ~i~~  145 (145)
T pfam08706       142 DIFG  145 (145)
T ss_pred             HHHC
T ss_conf             9739