HHsearch alignment for GI: 254781225 and conserved domain: pfam08706
>pfam08706 D5_N D5 N terminal like. This domain is found in D5 proteins of DNA viruses and bacteriophage P4 DNA primases phages.
Probab=99.86 E-value=1.2e-20 Score=154.87 Aligned_cols=143 Identities=19% Similarity=0.192 Sum_probs=94.3
Q ss_pred HHHHHCCCEEEEEEECCEEEEECCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99870898399996178146860880577413122013445899999999999998654101230148899875687776
Q gi|254781225|r 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 (789)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~wy~~~~~~~~~~~g~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (789)
T Consensus 3 ~~~~~~~~~l~y~~~~~~W~~--------~~g~~W~~d~~~-~v~~~~~~~~~~~~~~~~~------~~-~~~~~~---~ 63 (145)
T pfam08706 3 RLADRYGKDLRYVPGTGGWYV--------WDGKRWEEDSKK-AIRELADKLLRLILEEAEA------AK-ELRKFA---K 63 (145)
T ss_pred HHHHHHCCEEEEECCCCCEEE--------ECCCEEEECCHH-HHHHHHHHHHHHHHHHHHH------HH-HHHHHH---H
T ss_conf 899983993899778792899--------789894168588-9999999999999999999------99-999999---9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCEEEECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHH
Q ss_conf 20002679999874110000123202205797176607937974388855898655010013788887579478999998
Q gi|254781225|r 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 (789)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~ll~~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~ 474 (789)
T Consensus 64 ~~~~~~~i~~~~~~~~~~--~~~~~~~~D~~p~ll~~~NGv~DL~tg~l~~h~p~~~~T~~~~v~y~p~a~~p~~~~fL~ 141 (145)
T pfam08706 64 RSRSKSGVKNVLREAKAM--LDVTLDELDADPYLLNFPNGVLDLRTGELRPHDPEDRLTKITPVDYDPDADCPLWKQFLE 141 (145)
T ss_pred HHCCHHHHHHHHHHHHHH--CCCCHHHHCCCCCEECCCCEEEECCCCCCCCCCHHHHEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 850677899999984042--367988946997873799858989899578899778154425878898998878999999
Q ss_pred HHCC
Q ss_conf 8879
Q gi|254781225|r 475 GYFE 478 (789)
Q Consensus 475 ~~~~ 478 (789)
T Consensus 142 ~i~~ 145 (145)
T pfam08706 142 DIFG 145 (145)
T ss_pred HHHC
T ss_conf 9739