HHsearch results for GI: 254781225 and protein with PDBid: 1d2n_A
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.86 E-value=0.2 Score=25.78 Aligned_cols=87 Identities=13% Similarity=0.019 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC---CCCCHHHHHHCC
Q ss_conf 99999999999975987433799997078862578999999972330003442676420124555---568988997389
Q gi|254781225|r 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA---GKANPSLIRLMG 558 (789)
Q Consensus 482 ~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~---~~~~~~la~l~g 558 (789)
+.+.++.++-.+-.+......-++++|+.|+|||++...|...+|-..+.......+.+..+... -..-++.|+-..
T Consensus 45 i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~~iA~~~~~~~i~i~~~~~~~g~~~~~~~~~i~~~F~~A~~~~ 124 (272)
T 1d2n_A 45 VLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQ 124 (272)
T ss_dssp HHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999860689998369988979998999999999997999066504522110143289999999999987517
Q ss_pred CEEEEEECCC
Q ss_conf 8099993467
Q gi|254781225|r 559 SRIVIISETN 568 (789)
Q Consensus 559 ~r~~~~~E~~ 568 (789)
--+++++|.+
T Consensus 125 p~Il~iDEid 134 (272)
T 1d2n_A 125 LSCVVVDDIE 134 (272)
T ss_dssp EEEEEECCHH
T ss_pred CCEEEEEHHH
T ss_conf 8378862686