HHsearch results for GI: 254781225 and protein with PDBid: 1fnn_A
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.18 E-value=0.0022 Score=38.71 Aligned_cols=255 Identities=13% Similarity=0.086 Sum_probs=116.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC---CCC------CHH-HHHH---CCC-
Q ss_conf 99999999999999997598743379999707886257899999997233000---344------267-6420---124-
Q gi|254781225|r 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV---INA------EAS-DIMQ---NRP- 543 (789)
Q Consensus 478 ~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~---~~~------~~~-~~~~---~~~- 543 (789)
+-++-++.+..++.-.+.........++++|+.|.||+++.+.+..-+.+... ... +.. .+.. ..+
T Consensus 21 ~Re~e~~~l~~~l~~~~~~~~~~~~~~li~GppGtGKT~~ar~la~~l~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~ 100 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNI 100 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHCCCHHHHHHHHHHHHCC
T ss_conf 76999999999999998667988881799889999699999999998531258976985531116589999888887233
Q ss_pred --CCCCCCCH--------HHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCC
Q ss_conf --55556898--------89973898099993467776013100245415985873210478606871452899973886
Q gi|254781225|r 544 --PEAGKANP--------SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 (789)
Q Consensus 544 --~~~~~~~~--------~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~ 613 (789)
...+.... .+....+..+.+..|.+.-.......+-.+ . ............++..+|..
T Consensus 101 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lde~~~l~~~~~~~~~~~----------~-~~~~~~~~~~~~~I~~~~~~ 169 (389)
T 1fnn_A 101 PFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRL----------G-QEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHH----------T-TCHHHHSSCCEEEEEEESST
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH----------H-HHHHHCCCCCEEEEEECCCC
T ss_conf 323246516689999999986416654331058877668888889999----------9-87652157717999926764
Q ss_pred CCCCCCCCCEEEEE--EEEECCCCCCCC--------------CCCHHHHH----C---C-----CCHHHHHHHHHHHHH-
Q ss_conf 34267984166468--999658878887--------------87833422----0---1-----204479999999999-
Q gi|254781225|r 614 LFVRNPDDAWWRRY--IVIPFDKPIANR--------------DASFAQKL----E---T-----KYTLEAKKWFLKGVK- 664 (789)
Q Consensus 614 P~~~~~d~~~~rR~--~iipF~~~~~~~--------------d~~~~~~~----~---~-----~e~~~i~~w~l~g~~- 664 (789)
......+..+.+|+ ..+.|...-.++ ...+.+.. . . ....|-..+++.-+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~i~~~p~~~~~l~~Il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~Gd~R~ai~ll~~ 249 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred CHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 22220252233025774002799999999999999998734456778889999999989875002358999999999999
Q ss_pred ---HHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH--------------HHEEECCCCEECHHHHHHHHHHHHHHCCC
Q ss_conf ---9998788988788999999999984263888875--------------43262688411179999999999985046
Q gi|254781225|r 665 ---AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------------DCCDIGENLWEESHSLAKSYSEYREQELN 727 (789)
Q Consensus 665 ---~~~~~g~~~~~p~~v~~a~~~y~~~~D~v~~fi~--------------e~ce~~~~~~~~~~~l~~~y~~~~~~~~~ 727 (789)
.....+.....++.|..+.++... +.+...+. .+........+...++|+.|...|+..+
T Consensus 250 a~~~a~~~~~~~i~~~~v~~a~~~~~~--~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~y~~l~~~~~- 326 (389)
T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLF--GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYG- 326 (389)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSC--CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHC--CCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCC-
T ss_conf 999998618787899999999999975--61789986399989999999999987378875109999999999999819-
Q ss_pred CCCCCCCHHHHHHHHHH---CCCC
Q ss_conf 67555452568999986---3542
Q gi|254781225|r 728 YDRKRISTRTVTLNLKQ---KGFI 748 (789)
Q Consensus 728 ~~~~~~s~~~~~~~l~~---~g~~ 748 (789)
..+.+.+.|...|.+ .|+.
T Consensus 327 --~~~~~~~~~~~~l~~L~~~gli 348 (389)
T 1fnn_A 327 --ERPRVHSQLWSYLNDLREKGIV 348 (389)
T ss_dssp --CCCCCHHHHHHHHHHHHHTTSS
T ss_pred --CCCCCHHHHHHHHHHHHHCCCC
T ss_conf --9987699999999999977981