HHsearch results for GI: 254781225 and protein with PDBid: 1in4_A
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.90 E-value=0.00085 Score=41.51 Aligned_cols=154 Identities=15% Similarity=0.214 Sum_probs=81.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCH
Q ss_conf 99888799999999999999997598743379999707886257899999997233000344267642012455556898
Q gi|254781225|r 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 (789)
Q Consensus 472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (789)
.|+++.|.+.++.-+..++-.........+ .++|+|+.|.||+|+..+|.+.++........ ..... .+....
T Consensus 23 ~l~dvvGQ~~~~~~l~~~i~~~~~~~~~~~-~lLf~GPPGtGKTTlA~iiA~~~~~~~~~~s~-~~~~~-----~~d~~~ 95 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLD-HVLLAGPPGLGKTTLAHIIASELQTNIHVTSG-PVLVK-----QGDMAA 95 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCC-CEEEESSTTSSHHHHHHHHHHHHTCCEEEEET-TTCCS-----HHHHHH
T ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCC-----HHHHHH
T ss_conf 788834959999999999998884388888-17988969988999999999831887445678-53212-----678999
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCC-CEEEEEECC--CEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE-
Q ss_conf 899738980999934677760131-002454159--8587321047860687145289997388634267984166468-
Q gi|254781225|r 552 SLIRLMGSRIVIISETNENDEINA-AKIKQMTGG--DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY- 627 (789)
Q Consensus 552 ~la~l~g~r~~~~~E~~~~~~~~~-~~~K~ltgg--D~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~- 627 (789)
.+.......+++++|...-.+... ..+..+-.+ |.+.+..-..+.+....+.+.++.+||..+.+. .++..|+
T Consensus 96 ~~~~~~~~~ilfIDEihr~~k~~qd~ll~~~E~~~i~~l~g~~~~~~~~~~~~~~~~~i~att~~~~~~---~~l~sR~~ 172 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS---SPLRSRFG 172 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSC---HHHHTTCS
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHCEEEEEEECCCCCCCCEECCCCCEEEEEECCCCCCCC---HHHHHHHE
T ss_conf 988640253023445865436688751010002069988526744554004777557997426754363---77776600
Q ss_pred EEEECCCC
Q ss_conf 99965887
Q gi|254781225|r 628 IVIPFDKP 635 (789)
Q Consensus 628 ~iipF~~~ 635 (789)
.++.|+..
T Consensus 173 ~~~~~~~~ 180 (334)
T 1in4_A 173 IILELDFY 180 (334)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
T ss_conf 26521678