HHsearch results for GI: 254781225 and protein with PDBid: 1iqp_A

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.30  E-value=0.074  Score=28.62  Aligned_cols=140  Identities=12%  Similarity=0.083  Sum_probs=69.4

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC----CCCCCHHHHHHCCCCCCCCC
Q ss_conf             88879999999999999999759874337999970788625789999999723300----03442676420124555568
Q gi|254781225|r  474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY----VINAEASDIMQNRPPEAGKA  549 (789)
Q Consensus       474 ~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~----~~~~~~~~~~~~~~~~~~~~  549 (789)
                      +++.|.++.++.|+.++-.   +...   .++++|+-|.||+|+..++..-++...    ....................
T Consensus        25 ~dlig~~~~~~~L~~~~~~---~~~p---~lll~Gp~G~GKTtla~~lak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (327)
T 1iqp_A           25 DDIVGQEHIVKRLKHYVKT---GSMP---HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVK   98 (327)
T ss_dssp             TTCCSCHHHHHHHHHHHHH---TCCC---EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHC---CCCC---EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHH
T ss_conf             9923969999999999977---9998---698789899999999999999976401477711344545566489999999


Q ss_pred             CHHHH---HHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf             98899---738980999934677760131002454159858732104786068714528999738863426798416646
Q gi|254781225|r  550 NPSLI---RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR  626 (789)
Q Consensus       550 ~~~la---~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR  626 (789)
                      .+...   .-...+++++.|.+....-....++               +...++.-...+++.||+...+.   ..+-+|
T Consensus        99 ~~~~~~~~~~~~~~viiide~~~~~~~~~~~Ll---------------~~le~~~~~~~~i~~~~~~~~i~---~~l~sr  160 (327)
T 1iqp_A           99 EFARTKPIGGASFKIIFLDEADALTQDAQQALR---------------RTMEMFSSNVRFILSCNYSSKII---EPIQSR  160 (327)
T ss_dssp             HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHH---------------HHHHHTTTTEEEEEEESCGGGSC---HHHHHT
T ss_pred             HHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHH---------------HHHHCCCCCEEEEECCCCHHHCC---HHHHCH
T ss_conf             998631236887269998676646576899999---------------98850577514552368631163---678462


Q ss_pred             EEEEECCCCCC
Q ss_conf             89996588788
Q gi|254781225|r  627 YIVIPFDKPIA  637 (789)
Q Consensus       627 ~~iipF~~~~~  637 (789)
                      ..+|.|+..-+
T Consensus       161 ~~~i~~~~~~~  171 (327)
T 1iqp_A          161 CAIFRFRPLRD  171 (327)
T ss_dssp             EEEEECCCCCH
T ss_pred             HHCCCCCCCCH
T ss_conf             32021256777