HHsearch results for GI: 254781225 and protein with PDBid: 1jr3_A
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.88 E-value=0.16 Score=26.46 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=71.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH-CCCCCCCCC------HHHHHHCCCC-
Q ss_conf 98887999999999999999975987433799997078862578999999972-330003442------6764201245-
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-GNQYVINAE------ASDIMQNRPP- 544 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll-G~~~~~~~~------~~~~~~~~~~- 544 (789)
++++.|.++.++.|..++.. .+....++++|+-|.||+|+...+...+ ++......+ -..+..+...
T Consensus 15 ~~d~ig~~~~~~~l~~~~~~-----~~~~h~~L~~Gp~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d 89 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSL-----GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 89 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHH-----TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSS
T ss_pred HHHCCCHHHHHHHHHHHHHC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 99805969999999999976-----9977147657999988999999999986787788767676535899997589971
Q ss_pred --------C--CCCCCHHHH-----HHC-CCEEEEEECCCCCCCCCC-CEEEEEECCCEEEEEECCCCCCEEEECCEEEE
Q ss_conf --------5--556898899-----738-980999934677760131-00245415985873210478606871452899
Q gi|254781225|r 545 --------E--AGKANPSLI-----RLM-GSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 (789)
Q Consensus 545 --------~--~~~~~~~la-----~l~-g~r~~~~~E~~~~~~~~~-~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~ 607 (789)
. ....+.-+. ... +.+++++.|.+.-..-.. +.+|.| .+..+...++
T Consensus 90 ~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiide~d~l~~~a~n~Llk~l----------------Eep~~~~~~i 153 (373)
T 1jr3_A 90 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL----------------EEPPEHVKFL 153 (373)
T ss_dssp CEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHH----------------HSCCSSEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH----------------HCCCCCEEEE
T ss_conf 798522102889999999999854665799769998683638999999999998----------------5788673898
Q ss_pred EECCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf 9738863426798416646899965887
Q gi|254781225|r 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 (789)
Q Consensus 608 ~~~N~~P~~~~~d~~~~rR~~iipF~~~ 635 (789)
++||..-.+ ...+-.|...|.|...
T Consensus 154 l~t~~~~~~---~~ti~SRc~~i~~~~~ 178 (373)
T 1jr3_A 154 LATTDPQKL---PVTILSRCLQFHLKAL 178 (373)
T ss_dssp EEESCGGGS---CHHHHTTSEEEECCCC
T ss_pred EECCCHHHC---HHHHHHHHHHCCCCCC
T ss_conf 844875654---2899965431011346