HHsearch results for GI: 254781225 and protein with PDBid: 1svm_A
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.43 E-value=0.0026 Score=38.31 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=76.8
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 99999888799999999999999997598743379999707886257899999997233000344267642012455556
Q gi|254781225|r 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 (789)
Q Consensus 469 ~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~ 548 (789)
...||...+++-+.+. .+++-+.+.|. ..+..++++||.|.|||+|...|.+.+|.... +.+.+.. .
T Consensus 140 ~v~~l~~~~~~~~~~~--~~~l~~~~~~~-~~~~~iL~~GPPGtGKT~lA~alA~~l~~~~i-~in~s~~---------~ 206 (377)
T 1svm_A 140 GVAWLHCLLPKMDSVV--YDFLKCMVYNI-PKKRYWLFKGPIDSGKTTLAAALLELCGGKAL-NVNLPLD---------R 206 (377)
T ss_dssp HHHHHTTTSTTHHHHH--HHHHHHHHHCC-TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEE-CCSSCTT---------T
T ss_pred HHHHHHHCCCCCCHHH--HHHHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE-EEECHHH---------H
T ss_conf 9999985156724899--99999998489-86445999899999889999999998599889-9977003---------1
Q ss_pred CCHHHHHHCCCEEEEEECCCCC----------CCCCC--CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCC
Q ss_conf 8988997389809999346777----------60131--00245415985873210478606871452899973886342
Q gi|254781225|r 549 ANPSLIRLMGSRIVIISETNEN----------DEINA--AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 (789)
Q Consensus 549 ~~~~la~l~g~r~~~~~E~~~~----------~~~~~--~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~ 616 (789)
..+.+..+.++...++.+.... -.+++ .....+-|+.......++.... ..... -++++||+.-
T Consensus 207 s~f~l~~~~~~~~~~~dd~~~~~~~~~~~~~~i~iDEiD~l~~~~dg~~~~~ld~k~~~~~-~~~~~-piI~TtN~~~-- 282 (377)
T 1svm_A 207 LNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKR-TQIFP-PGIVTMNEYS-- 282 (377)
T ss_dssp HHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCE-EECCC-CEEEEECSCC--
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCCCCHHCCCCHH-HCCCC-CEEEECCCCC--
T ss_conf 0888751420212036888876664157898067640864200014860001001123501-11566-6378517444--
Q ss_pred CCCCCCEEEEEEEEEC
Q ss_conf 6798416646899965
Q gi|254781225|r 617 RNPDDAWWRRYIVIPF 632 (789)
Q Consensus 617 ~~~d~~~~rR~~iipF 632 (789)
+..-...||..++-|
T Consensus 283 -~~~~~~~R~~~~~i~ 297 (377)
T 1svm_A 283 -VPKTLQARFVKQIDF 297 (377)
T ss_dssp -CCHHHHTTEEEEEEC
T ss_pred -CCCCCCCCCEEEEEC
T ss_conf -642014775122205