HHsearch results for GI: 254781225 and protein with PDBid: 1tue_A
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.69 E-value=3.5e-17 Score=130.35 Aligned_cols=159 Identities=12% Similarity=0.117 Sum_probs=121.7
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 87579478999998887999999999999999975987433799997078862578999999972330003442676420
Q gi|254781225|r 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 (789)
Q Consensus 461 ~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~ 540 (789)
+.+.....+.+||.- ..-+.+.|+ ..+...|.|..+ +.+++++|++++|||+|...|.+.++....+..
T Consensus 22 ~~~g~w~~i~~~l~~--q~v~~~~fl-~~l~~~l~g~PK-knci~~~GPp~TGKS~fa~sL~~~l~G~vis~~------- 90 (212)
T 1tue_A 22 DEGGDWRPIVQFLRY--QQIEFITFL-GALKSFLKGTPK-KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFV------- 90 (212)
T ss_dssp CSCCCSHHHHHHHHH--TTCCHHHHH-HHHHHHHHTCTT-CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCC-------
T ss_pred CCCCCHHHHHHHHHH--CCCCHHHHH-HHHHHHHCCCCC-CEEEEEECCCCCCHHHHHHHHHHHHCCEEEECC-------
T ss_conf 788878999999987--785399999-999999708986-228999889986689999999998568046315-------
Q ss_pred CCCCCCCCCCHHHHHHCCCEEEEEECCCCC--CCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCC
Q ss_conf 124555568988997389809999346777--601310024541598587321047860687145289997388634267
Q gi|254781225|r 541 NRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 (789)
Q Consensus 541 ~~~~~~~~~~~~la~l~g~r~~~~~E~~~~--~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~ 618 (789)
+ ...+|.|+.|.++++++.+|+... ..+ ...+|.++||++|.++.||+++. ++.+. .++++||+.|...+
T Consensus 91 ----N-~~S~F~Lq~l~~~ki~l~dD~t~~~~~~~-d~~lK~ll~G~~V~vd~Khk~~~-qi~~p-PliITsN~d~~~~d 162 (212)
T 1tue_A 91 ----N-STSHFWLEPLTDTKVAMLDDATTTCWTYF-DTYMRNALDGNPISIDRKHKPLI-QLKCP-PILLTTNIHPAKDN 162 (212)
T ss_dssp ----C-SSSCGGGGGGTTCSSEEEEEECHHHHHHH-HHHCHHHHHTCCEEEC----CCE-EECCC-CEEEEESSCTTSSS
T ss_pred ----C-CCCCCCCCCCCCCEEEEEECCCCCHHHHH-HHHHHHCCCCCEEEECCCCCCCE-EECCC-CEEEEECCCCCCCC
T ss_conf ----7-78886677667987999846664246778-99999703998166500259960-30279-88998188989675
Q ss_pred CCCCEEEEEEEEECCCCCCC
Q ss_conf 98416646899965887888
Q gi|254781225|r 619 PDDAWWRRYIVIPFDKPIAN 638 (789)
Q Consensus 619 ~d~~~~rR~~iipF~~~~~~ 638 (789)
.+.+++||+++++|+++||-
T Consensus 163 ~~~~L~sRi~~f~F~~~fP~ 182 (212)
T 1tue_A 163 RWPYLESRITVFEFPNAFPF 182 (212)
T ss_dssp SCHHHHTSCEEEECCSCCCB
T ss_pred CCHHHHHEEEEEECCCCCCC
T ss_conf 52426650799887994887