HHsearch results for GI: 254781225 and protein with PDBid: 1xwi_A

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.81  E-value=0.086  Score=28.19  Aligned_cols=96  Identities=23%  Similarity=0.221  Sum_probs=55.3

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHC------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf             8887999999999999999975------9874337999970788625789999999723300034426764201245555
Q gi|254781225|r  474 SGYFESEEVMDYFTRCVGMALL------GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG  547 (789)
Q Consensus       474 ~~~~~d~e~~~~l~~~~g~~l~------g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~  547 (789)
                      ++|.|-++..+-+.+.+-+.|.      +.....+-++++|+-|.|||++.+.+..-++......++...+.......+.
T Consensus        12 ~dI~Gl~~~k~~l~e~i~~pl~~~~~~~~~~~p~~gvLL~GPpGtGKT~la~aiA~e~~~~~~~~v~~~~l~s~~~g~~~   91 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE   91 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCH
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHH
T ss_conf             99457599999999999999739998727999998168889899988999999999705795799777997572330999


Q ss_pred             ---CCCHHHHHHCCCEEEEEECCCC
Q ss_conf             ---6898899738980999934677
Q gi|254781225|r  548 ---KANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       548 ---~~~~~la~l~g~r~~~~~E~~~  569 (789)
                         ..-++.|+.....++++.|.+.
T Consensus        92 ~~i~~~f~~a~~~~p~ii~ideid~  116 (322)
T 1xwi_A           92 KLVKNLFQLARENKPSIIFIDEIDS  116 (322)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEETTTG
T ss_pred             HHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf             9999999999863996687420355