HHsearch results for GI: 254781225 and protein with PDBid: 1xwi_A
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.81 E-value=0.086 Score=28.19 Aligned_cols=96 Identities=23% Similarity=0.221 Sum_probs=55.3
Q ss_pred HHHCCCHHHHHHHHHHHHHHHC------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 8887999999999999999975------9874337999970788625789999999723300034426764201245555
Q gi|254781225|r 474 SGYFESEEVMDYFTRCVGMALL------GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 (789)
Q Consensus 474 ~~~~~d~e~~~~l~~~~g~~l~------g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~ 547 (789)
++|.|-++..+-+.+.+-+.|. +.....+-++++|+-|.|||++.+.+..-++......++...+.......+.
T Consensus 12 ~dI~Gl~~~k~~l~e~i~~pl~~~~~~~~~~~p~~gvLL~GPpGtGKT~la~aiA~e~~~~~~~~v~~~~l~s~~~g~~~ 91 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE 91 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHH
T ss_conf 99457599999999999999739998727999998168889899988999999999705795799777997572330999
Q ss_pred ---CCCHHHHHHCCCEEEEEECCCC
Q ss_conf ---6898899738980999934677
Q gi|254781225|r 548 ---KANPSLIRLMGSRIVIISETNE 569 (789)
Q Consensus 548 ---~~~~~la~l~g~r~~~~~E~~~ 569 (789)
..-++.|+.....++++.|.+.
T Consensus 92 ~~i~~~f~~a~~~~p~ii~ideid~ 116 (322)
T 1xwi_A 92 KLVKNLFQLARENKPSIIFIDEIDS 116 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEETTTG
T ss_pred HHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 9999999999863996687420355