HHsearch results for GI: 254781225 and protein with PDBid: 2chg_A
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.39 E-value=0.0023 Score=38.63 Aligned_cols=133 Identities=11% Similarity=0.085 Sum_probs=70.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHH
Q ss_conf 98887999999999999999975987433799997078862578999999972330003442676420124555568988
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (789)
++++.|.+++++.|+.++- .+.. . .++++|+.|.||+|+..++..-++...... +...+.. +.....+
T Consensus 16 ~~diig~~~~~~~l~~~i~---~~~~-~--~~Ll~Gp~G~GKTtla~~iak~l~~~~~~~-~~~~~n~-----~~~~~~~ 83 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVE---RKNI-P--HLLFSGPPGTGKTATAIALARDLFGENWRD-NFIEMNA-----SDERGID 83 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHH---TTCC-C--CEEEECSTTSSHHHHHHHHHHHHHGGGGGG-GEEEEET-----TCTTCHH
T ss_pred HHHHCCHHHHHHHHHHHHH---CCCC-C--EEEEECCCCCCHHHHHHHHHHHHHCCCCCC-CCCEEEC-----CCCCCHH
T ss_conf 9992098999999999997---6999-8--598889999988999999999984355567-7132346-----7767699
Q ss_pred HH-------------HHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCC
Q ss_conf 99-------------73898099993467776013100245415985873210478606871452899973886342679
Q gi|254781225|r 553 LI-------------RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619 (789)
Q Consensus 553 la-------------~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~ 619 (789)
.. .-...+++++.|.+.-..-....|..+. .+..+...+++.+|+.- .-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~iiide~~~l~~~~q~~ll~~l---------------e~~~~~~~~i~~~~~~~---~l 145 (226)
T 2chg_A 84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTM---------------EMYSKSCRFILSCNYVS---RI 145 (226)
T ss_dssp HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHH---------------HHTTTTEEEEEEESCGG---GS
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHH---------------HHCCCCCEEEECCCCHH---HC
T ss_conf 9999999998601126986699995112016899999988876---------------42776544773679856---58
Q ss_pred CCCEEEEEEEEECCCC
Q ss_conf 8416646899965887
Q gi|254781225|r 620 DDAWWRRYIVIPFDKP 635 (789)
Q Consensus 620 d~~~~rR~~iipF~~~ 635 (789)
..++..|..+++|...
T Consensus 146 ~~~i~sr~~~i~~~~~ 161 (226)
T 2chg_A 146 IEPIQSRCAVFRFKPV 161 (226)
T ss_dssp CHHHHTTSEEEECCCC
T ss_pred CHHHHCHHHHHHHCCC
T ss_conf 1778653566543012