HHsearch results for GI: 254781225 and protein with PDBid: 2chg_A

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.39  E-value=0.0023  Score=38.63  Aligned_cols=133  Identities=11%  Similarity=0.085  Sum_probs=70.7

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHH
Q ss_conf             98887999999999999999975987433799997078862578999999972330003442676420124555568988
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS  552 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (789)
                      ++++.|.+++++.|+.++-   .+.. .  .++++|+.|.||+|+..++..-++...... +...+..     +.....+
T Consensus        16 ~~diig~~~~~~~l~~~i~---~~~~-~--~~Ll~Gp~G~GKTtla~~iak~l~~~~~~~-~~~~~n~-----~~~~~~~   83 (226)
T 2chg_A           16 LDEVVGQDEVIQRLKGYVE---RKNI-P--HLLFSGPPGTGKTATAIALARDLFGENWRD-NFIEMNA-----SDERGID   83 (226)
T ss_dssp             GGGCCSCHHHHHHHHHHHH---TTCC-C--CEEEECSTTSSHHHHHHHHHHHHHGGGGGG-GEEEEET-----TCTTCHH
T ss_pred             HHHHCCHHHHHHHHHHHHH---CCCC-C--EEEEECCCCCCHHHHHHHHHHHHHCCCCCC-CCCEEEC-----CCCCCHH
T ss_conf             9992098999999999997---6999-8--598889999988999999999984355567-7132346-----7767699


Q ss_pred             HH-------------HHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCC
Q ss_conf             99-------------73898099993467776013100245415985873210478606871452899973886342679
Q gi|254781225|r  553 LI-------------RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP  619 (789)
Q Consensus       553 la-------------~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~  619 (789)
                      ..             .-...+++++.|.+.-..-....|..+.               .+..+...+++.+|+.-   .-
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~iiide~~~l~~~~q~~ll~~l---------------e~~~~~~~~i~~~~~~~---~l  145 (226)
T 2chg_A           84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTM---------------EMYSKSCRFILSCNYVS---RI  145 (226)
T ss_dssp             HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHH---------------HHTTTTEEEEEEESCGG---GS
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHH---------------HHCCCCCEEEECCCCHH---HC
T ss_conf             9999999998601126986699995112016899999988876---------------42776544773679856---58


Q ss_pred             CCCEEEEEEEEECCCC
Q ss_conf             8416646899965887
Q gi|254781225|r  620 DDAWWRRYIVIPFDKP  635 (789)
Q Consensus       620 d~~~~rR~~iipF~~~  635 (789)
                      ..++..|..+++|...
T Consensus       146 ~~~i~sr~~~i~~~~~  161 (226)
T 2chg_A          146 IEPIQSRCAVFRFKPV  161 (226)
T ss_dssp             CHHHHTTSEEEECCCC
T ss_pred             CHHHHCHHHHHHHCCC
T ss_conf             1778653566543012