HHsearch results for GI: 254781225 and protein with PDBid: 2chq_A
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.01 E-value=0.067 Score=28.91 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=68.7
Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCHHHHHHCCCCCCCC-CCH
Q ss_conf 8887999999999999999975987433799997078862578999999972330003-44267642012455556-898
Q gi|254781225|r 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI-NAEASDIMQNRPPEAGK-ANP 551 (789)
Q Consensus 474 ~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~-~~~~~~~~~~~~~~~~~-~~~ 551 (789)
.++.|.++.++.|+.++- .+... + ++++|+.|.||+|+...+.+-++..... ......-...++..... ...
T Consensus 17 ~diig~~~~~~~l~~~i~---~~~~~-~--~L~~Gp~G~GKttla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVE---RKNIP-H--LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (319)
T ss_dssp GGSCSCHHHHHHHHTTTT---TTCCC-C--EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHH
T ss_pred HHHCCHHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 991395999999999997---79998-7--99889799999999999999734456787647753567776378999999
Q ss_pred HHHH---H--CCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 8997---3--8980999934677760131002454159858732104786068714528999738863426798416646
Q gi|254781225|r 552 SLIR---L--MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 (789)
Q Consensus 552 ~la~---l--~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR 626 (789)
..+. . ...+++++.|.+.-..-....+ .+...+......+++.||.... ....+-+|
T Consensus 91 ~~~~~~~~~~~~~~~iiide~d~l~~~~q~~l---------------l~~le~~~~~~~~i~~~~~~~~---~~~~i~sr 152 (319)
T 2chq_A 91 EFARTAPIGGAPFKIIFLDEADALTADAQAAL---------------RRTMEMYSKSCRFILSCNYVSR---IIEPIQSR 152 (319)
T ss_dssp HHHHSCCSSSCCCEEEEEETGGGSCHHHHHTT---------------GGGTSSSSSSEEEEEEESCGGG---SCHHHHTT
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHH---------------HHHHHCCCCCCEECCCCCCCCC---CCHHHHCC
T ss_conf 98874440699648999725331679999999---------------8776127865111025685012---64767473
Q ss_pred EEEEECCCCC
Q ss_conf 8999658878
Q gi|254781225|r 627 YIVIPFDKPI 636 (789)
Q Consensus 627 ~~iipF~~~~ 636 (789)
..++.|+..-
T Consensus 153 ~~~i~~~~~~ 162 (319)
T 2chq_A 153 CAVFRFKPVP 162 (319)
T ss_dssp CEEEECCCCC
T ss_pred HHEEECCCCC
T ss_conf 0133147899