HHsearch results for GI: 254781225 and protein with PDBid: 2v9p_A
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.59 E-value=2.3e-15 Score=118.32 Aligned_cols=176 Identities=14% Similarity=0.170 Sum_probs=122.8
Q ss_pred CCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 98655010013788887579478999998887999999999999999975987433799997078862578999999972
Q gi|254781225|r 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789)
Q Consensus 446 ~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789)
-+...+|...+..-.++ -....+.+||.- ..-+.+.++ .++-..|-|. ..+.+++++|++++|||+|...|...+
T Consensus 76 ms~s~~i~~r~~~~~~~-g~w~~Iv~fL~~--q~v~~i~fl-~~l~~~l~~~-PKknci~~~GPpnTGKS~fa~sL~~~l 150 (305)
T 2v9p_A 76 LSMPAYIKARCKLATGE-GSWKSILTFFNY--QNIELITFI-NALKLWLKGI-PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SCHHHHHHHHHHHCCSS-CCTHHHHHHHHH--TTCCHHHHH-HHHHHHHHTC-TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCC-CCHHHHHHHHHH--CCCCHHHHH-HHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59999999997505788-765999999983--796599999-9999997289-874179998999878899999999980
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCC--CCCCCCEEEEEECCCEEEEEECCCCCCEEEECC
Q ss_conf 330003442676420124555568988997389809999346777--601310024541598587321047860687145
Q gi|254781225|r 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 (789)
Q Consensus 526 G~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~--~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~ 603 (789)
|. .+.+. .. .+.+|+|..|.++++++..|+... ..+ ...+|.++||++|.++.||+++. ++++.
T Consensus 151 ~G-~vis~----~N-------~ks~F~L~~l~dkkv~l~dD~t~~~~~~~-d~~lK~~lgG~~V~id~Khk~~~-qi~~p 216 (305)
T 2v9p_A 151 GG-SVLSF----AN-------HKSHFWLASLADTRAALVDDATHACWRYF-DTYLRNALDGYPVSIDRKHKAAV-QIKAP 216 (305)
T ss_dssp TC-EEECG----GG-------TTSGGGGGGGTTCSCEEEEEECHHHHHHH-HHTTTGGGGTCCEECCCSSCCCC-EECCC
T ss_pred CC-CEEEE----CC-------CCCCCCCCCHHCCEEEEEECCCHHHHHHH-HHHHHHHCCCCEEEEECCCCCCC-CCCCC
T ss_conf 98-36850----68-------99976577321587999815660556778-99999713997477630047863-14689
Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf 28999738863426798416646899965887888787
Q gi|254781225|r 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641 (789)
Q Consensus 604 ~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~d~ 641 (789)
-++++||+.|...+...++++|+++++|+++||+.+.
T Consensus 217 -PlIITSN~di~~~d~~~yL~sR~~~f~F~~~~Pd~~g 253 (305)
T 2v9p_A 217 -PLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESG 253 (305)
T ss_dssp -CEEEEESSCSTTCGGGGGGTTTEEEEECCCCCCCC--
T ss_pred -CEEEECCCCCCCCCCCHHHHHEEEEEECCCCCCCCCC
T ss_conf -8899648998857551446642799777998988899