HHsearch results for GI: 254781225 and protein with PDBid: 3hu3_A
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: ATG; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B
Probab=93.38 E-value=0.15 Score=26.53 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=55.2
Q ss_pred HCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC--
Q ss_conf 879999999999999999759-------87433799997078862578999999972330003442676420124555--
Q gi|254781225|r 476 YFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA-- 546 (789)
Q Consensus 476 ~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~-- 546 (789)
+.|-++..+-+++++-+-|.. .....+-++++|+.|+|||++.+.+.+-+|-.........+++...+...
T Consensus 206 igGl~~~~~~l~e~v~lpl~~pe~~~~~g~~~p~gvLL~GPpGtGKT~laraiA~e~~~~~~~i~~~~~~s~~~~ese~~ 285 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 285 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHCCCCCHHHH
T ss_conf 24599999999999998710999997579988751688798998815999999998589813763035532236520689
Q ss_pred CCCCHHHHHHCCCEEEEEECCCC
Q ss_conf 56898899738980999934677
Q gi|254781225|r 547 GKANPSLIRLMGSRIVIISETNE 569 (789)
Q Consensus 547 ~~~~~~la~l~g~r~~~~~E~~~ 569 (789)
-..-++.|+....-++++.|.+.
T Consensus 286 lr~~F~~A~~~~p~Ii~iDeiD~ 308 (489)
T 3hu3_A 286 LRKAFEEAEKNAPAIIFIDELDA 308 (489)
T ss_dssp HHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHHHCCCCCCEEECHHH
T ss_conf 99999999870886100054233