HHsearch results for GI: 254781225 and protein with PDBid: 3m1m_A
>3m1m_A ORF904; primase, polymerase, plasmid, replication; 1.85A {Sulfolobus islandicus}
Probab=99.90 E-value=4.1e-24 Score=176.44 Aligned_cols=186 Identities=21% Similarity=0.286 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCC--CCCCCCCCCCCHHHHHHH----H-HCCEEEEECCCCCCEEEEEEECCCC
Q ss_conf 67888878999977985977356778787--756545656898999742----0-0788999234779879999646881
Q gi|254781225|r 3 VMQWKEQAKQAIHNGFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKL----P-ACGFGFVCGVGEQPLYAFDIDSKDE 75 (789)
Q Consensus 3 ~~~~~~~~~~~i~~G~~viPi~pg~KrP~--~~~~w~~~~~~~~~i~~~----~-~~giGi~~G~~s~glv~iDiD~~d~ 75 (789)
.+|| |.+|++.||+|||+.|++|+|+ .|.+|++.+++.++|++| | ++||||+||. +|+||||||..++
T Consensus 8 ~L~~---Al~Yae~G~sVfPL~Pg~K~P~ik~Wk~yq~~~pt~eEI~~Ww~~~P~a~NIGI~TG~--sGLVVLDiD~keg 82 (335)
T 3m1m_A 8 RIRY---AKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ--KGLVILDFESKEK 82 (335)
T ss_dssp HHHH---HHHHHHTTCCCEEECTTTSSBSSTTGGGGGTSCCCHHHHHHHHHHHHTTCEEEEESSG--GGEEEEEESCHHH
T ss_pred HHHH---HHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC--CCEEEEECCCCCC
T ss_conf 9999---9999987996886689998887778632046897999999999749875548997288--8889998978642
Q ss_pred HHHHHHHHHHHHC-CCCCEEEECCCCCEEEEEEECCCCCCCC--CCCCCCCCCEEEECCCCEEEECCCC-----------
Q ss_conf 2567899987641-8997699678896599995073102445--4444576753485268438804776-----------
Q gi|254781225|r 76 KTANTFKDTFEIL-HGTPIVRIGQKPKILIPFRMNKEGIKKK--KTTESTQGHLDILGCGQYFVAYNIH----------- 141 (789)
Q Consensus 76 ~~~~~~~~~~~~l-~g~p~~~~g~~~~~~~~yr~~~~~~~~~--~~~~~~~~~iEi~~~G~q~V~~gsh----------- 141 (789)
.........+..+ ..+..++++ .|+.|++|+.+..+..+. .+....++.+||++.|+|||+|||.
T Consensus 83 ~~~~~~~~~L~~li~~T~~VkTP-SGG~HLYfr~~e~Pp~k~~p~~~~~G~gviDirs~ggYVVaPGS~inh~~~~~~k~ 161 (335)
T 3m1m_A 83 LKAWIGESALEELCRKTLCTNTV-HGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKC 161 (335)
T ss_dssp HHHHHCHHHHHHHHHHSCEEECT-TSCEEEEEECSSCCSSCEEEEEEETTEEEEEEECTTCEEECTTCEEEGGGCCSTTC
T ss_pred HHHHHHHHHHHHCCCCCEEEECC-CCCEEEEEECCCCCHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCC
T ss_conf 24554345666317787699899-99189999789988232265422478742778548978988820204556666678
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88887457517765587221646899999999976200124345432345543222345
Q gi|254781225|r 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200 (789)
Q Consensus 142 p~Tg~~Y~w~~~~~~~~~~~~P~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (789)
|..|+.|+.|+.+.. + +-.|.+..+..+++++.+..+..++..+.. ++.|...
T Consensus 162 ~~~g~~~~~~~~~~~-~---~~~i~~~~l~~~l~~l~e~~k~~~i~~~~~--~~~~~~~ 214 (335)
T 3m1m_A 162 PWKEQNYTTCYTLYN-E---LKEISKVDLKSLLRFLAEKGKRLGITLSKT--AKEWLEG 214 (335)
T ss_dssp TTTTSSCEEECEESS-C---CCCCCBCCHHHHHHHHHHHHGGGTEEECHH--HHHHHCC
T ss_pred CCCCCCCCEEECCCC-C---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCH--HHHHHCC
T ss_conf 856877720201245-5---551566587889999998745416331600--5666357