Query gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 789 No_of_seqs 322 out of 861 Neff 8.2 Searched_HMMs 23785 Date Wed Jun 1 02:14:46 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781225.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1u0j_A DNA replication protein 99.9 6.1E-29 2.6E-33 208.5 0.5 216 431-671 40-262 (267) 2 3m1m_A ORF904; primase, polyme 99.9 4.1E-24 1.7E-28 176.4 9.0 186 3-200 8-214 (335) 3 1ro2_A Hypothetical protein OR 99.9 2E-23 8.3E-28 171.9 8.9 179 3-187 4-199 (216) 4 1tue_A Replication protein E1; 99.7 3.5E-17 1.5E-21 130.4 7.7 159 461-638 22-182 (212) 5 2v9p_A Replication protein E1; 99.6 2.3E-15 9.7E-20 118.3 7.4 176 446-641 76-253 (305) 6 1dp7_P MHC class II transcript 98.4 8.3E-07 3.5E-11 61.5 8.0 75 694-773 2-76 (76) 7 1svm_A Large T antigen; AAA+ f 97.4 0.0026 1.1E-07 38.3 11.3 146 469-632 140-297 (377) 8 3eie_A Vacuolar protein sortin 97.0 0.00045 1.9E-08 43.3 3.9 153 475-633 19-182 (322) 9 1in4_A RUVB, holliday junction 96.9 0.00085 3.6E-08 41.5 4.4 154 472-635 23-180 (334) 10 3b9p_A CG5977-PA, isoform A; A 96.8 0.00039 1.6E-08 43.7 2.0 155 474-634 21-188 (297) 11 3pfi_A Holliday junction ATP-d 96.7 0.0033 1.4E-07 37.6 6.1 154 472-635 27-184 (338) 12 1njg_A DNA polymerase III subu 96.6 0.0052 2.2E-07 36.3 6.5 138 473-634 22-184 (250) 13 2zan_A Vacuolar protein sortin 96.6 0.0018 7.5E-08 39.3 4.1 155 475-634 135-300 (444) 14 3cf0_A Transitional endoplasmi 96.4 0.017 7E-07 32.9 8.0 95 475-569 16-119 (301) 15 1hqc_A RUVB; extended AAA-ATPa 96.2 0.0025 1.1E-07 38.4 3.1 154 473-636 11-169 (324) 16 1fnn_A CDC6P, cell division co 96.2 0.0022 9.4E-08 38.7 2.7 255 478-748 21-348 (389) 17 3d8b_A Fidgetin-like protein 1 96.2 0.00092 3.8E-08 41.3 0.6 151 476-633 86-249 (357) 18 2p5t_B PEZT; postsegregational 95.9 0.021 8.9E-07 32.2 6.8 55 477-531 6-62 (253) 19 2qp9_X Vacuolar protein sortin 95.9 0.0035 1.5E-07 37.4 2.6 131 498-634 81-216 (355) 20 1gvn_B Zeta; postsegregational 95.6 0.039 1.6E-06 30.5 7.1 53 477-529 7-61 (287) 21 3h4m_A Proteasome-activating n 95.5 0.025 1.1E-06 31.7 5.9 152 476-634 19-187 (285) 22 2chg_A Replication factor C sm 95.4 0.0023 9.7E-08 38.6 0.1 133 473-635 16-161 (226) 23 1sxj_A Activator 1 95 kDa subu 95.4 0.031 1.3E-06 31.2 5.8 55 473-527 38-103 (516) 24 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.039 1.6E-06 30.5 6.1 94 475-569 7-109 (262) 25 1lv7_A FTSH; alpha/beta domain 95.2 0.018 7.6E-07 32.7 4.2 95 475-569 13-115 (257) 26 1sxj_E Activator 1 40 kDa subu 95.2 0.013 5.3E-07 33.7 3.4 48 473-525 13-60 (354) 27 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.086 3.6E-06 28.2 6.8 96 474-569 12-116 (322) 28 1ofh_A ATP-dependent HSL prote 94.7 0.021 8.9E-07 32.2 3.5 161 467-634 7-201 (310) 29 2r62_A Cell division protease 94.5 0.038 1.6E-06 30.5 4.3 70 500-569 43-114 (268) 30 1knq_A Gluconate kinase; ALFA/ 94.4 0.043 1.8E-06 30.2 4.4 34 497-530 4-37 (175) 31 1sxj_C Activator 1 40 kDa subu 94.4 0.046 1.9E-06 30.0 4.5 139 473-636 24-170 (340) 32 1iy2_A ATP-dependent metallopr 94.3 0.1 4.4E-06 27.6 6.2 107 456-569 35-143 (278) 33 2qt1_A Nicotinamide riboside k 94.1 0.041 1.7E-06 30.3 3.9 42 491-532 11-52 (207) 34 1rz3_A Hypothetical protein rb 94.0 0.14 5.9E-06 26.8 6.4 46 481-529 5-50 (201) 35 2r44_A Uncharacterized protein 94.0 0.14 5.7E-06 26.9 6.3 53 468-528 17-73 (331) 36 1odf_A YGR205W, hypothetical 3 94.0 0.19 8.1E-06 25.8 7.1 43 483-525 13-55 (290) 37 1qvr_A CLPB protein; coiled co 93.9 0.25 1.1E-05 25.1 10.7 141 468-612 551-710 (854) 38 1d2n_A N-ethylmaleimide-sensit 93.9 0.2 8.3E-06 25.8 7.0 87 482-568 45-134 (272) 39 1ye8_A Protein THEP1, hypothet 93.7 0.047 2E-06 29.9 3.5 26 504-529 3-28 (178) 40 1ixz_A ATP-dependent metallopr 93.6 0.16 6.9E-06 26.3 6.2 71 498-569 46-119 (254) 41 1sxj_B Activator 1 37 kDa subu 93.6 0.056 2.4E-06 29.4 3.8 140 473-636 20-167 (323) 42 3hu3_A Transitional endoplasmi 93.4 0.15 6.4E-06 26.5 5.7 94 476-569 206-308 (489) 43 1iqp_A RFCS; clamp loader, ext 93.3 0.074 3.1E-06 28.6 4.0 140 474-637 25-171 (327) 44 1ly1_A Polynucleotide kinase; 93.1 0.075 3.2E-06 28.6 3.8 32 501-532 2-33 (181) 45 3euj_A Chromosome partition pr 93.0 0.073 3.1E-06 28.7 3.7 14 75-88 39-52 (483) 46 3c8u_A Fructokinase; YP_612366 93.0 0.19 7.8E-06 26.0 5.7 43 485-528 7-49 (208) 47 1jr3_A DNA polymerase III subu 92.9 0.16 6.6E-06 26.5 5.2 139 473-635 15-178 (373) 48 3ch4_B Pmkase, phosphomevalona 92.7 0.11 4.4E-06 27.6 4.1 32 500-531 10-41 (202) 49 1qhx_A CPT, protein (chloramph 92.6 0.083 3.5E-06 28.3 3.4 29 501-529 3-31 (178) 50 2i3b_A HCR-ntpase, human cance 92.4 0.069 2.9E-06 28.8 2.8 27 502-528 2-28 (189) 51 2yvu_A Probable adenylyl-sulfa 92.3 0.078 3.3E-06 28.5 3.0 30 499-528 10-40 (186) 52 2bdt_A BH3686; alpha-beta prot 92.2 0.11 4.5E-06 27.5 3.6 28 501-528 2-29 (189) 53 1htw_A HI0065; nucleotide-bind 92.1 0.39 1.6E-05 23.8 6.4 64 477-540 8-72 (158) 54 1sq5_A Pantothenate kinase; P- 92.1 0.4 1.7E-05 23.7 6.4 28 500-527 79-106 (308) 55 3ohm_A Guanine nucleotide-bind 92.1 0.14 5.8E-06 26.8 4.0 17 510-526 302-318 (327) 56 3m6a_A ATP-dependent protease 92.0 0.46 1.9E-05 23.3 9.9 198 470-689 76-298 (543) 57 2chq_A Replication factor C sm 92.0 0.067 2.8E-06 28.9 2.4 139 474-636 17-162 (319) 58 1uj2_A Uridine-cytidine kinase 91.9 0.12 5.1E-06 27.2 3.6 28 501-528 22-49 (252) 59 2pcj_A ABC transporter, lipopr 91.8 0.066 2.8E-06 28.9 2.1 27 500-526 29-55 (224) 60 2jeo_A Uridine-cytidine kinase 91.7 0.2 8.3E-06 25.8 4.5 32 497-528 21-52 (245) 61 2rhm_A Putative kinase; ZP_007 91.7 0.19 7.9E-06 25.9 4.4 30 499-528 3-32 (193) 62 3bos_A Putative DNA replicatio 91.6 0.49 2.1E-05 23.1 6.4 88 468-569 26-115 (242) 63 2pez_A Bifunctional 3'-phospho 91.5 0.14 6E-06 26.7 3.6 29 502-530 6-34 (179) 64 2x8a_A Nuclear valosin-contain 91.4 0.17 7E-06 26.3 3.9 71 499-569 42-114 (274) 65 2oap_1 GSPE-2, type II secreti 91.3 0.22 9.4E-06 25.4 4.5 52 470-529 237-288 (511) 66 1ltq_A Polynucleotide kinase; 91.3 0.17 7.2E-06 26.2 3.8 25 478-509 189-213 (301) 67 1w36_D RECD, exodeoxyribonucle 91.3 0.28 1.2E-05 24.8 4.9 18 131-149 163-180 (608) 68 1w5s_A ORC2; CDC6, DNA replica 91.2 0.55 2.3E-05 22.8 6.4 260 478-746 27-363 (412) 69 2onk_A Molybdate/tungstate ABC 91.1 0.1 4.3E-06 27.7 2.5 25 503-527 26-50 (240) 70 1cip_A Protein (guanine nucleo 91.0 0.16 6.8E-06 26.4 3.5 16 511-526 329-344 (353) 71 1zp6_A Hypothetical protein AT 91.0 0.12 5.3E-06 27.1 2.9 30 501-530 9-38 (191) 72 1r6b_X CLPA protein; AAA+, N-t 90.9 0.59 2.5E-05 22.6 9.7 161 447-612 425-607 (758) 73 1sxj_D Activator 1 41 kDa subu 90.8 0.058 2.4E-06 29.3 1.0 140 473-636 36-193 (353) 74 3cm0_A Adenylate kinase; ATP-b 90.5 0.22 9.3E-06 25.5 3.8 31 501-531 4-34 (186) 75 1h65_A Chloroplast outer envel 90.4 0.35 1.5E-05 24.1 4.8 80 477-568 17-96 (270) 76 1nks_A Adenylate kinase; therm 90.4 0.24 9.9E-06 25.3 3.9 27 502-528 2-28 (194) 77 1kag_A SKI, shikimate kinase I 90.4 0.16 6.8E-06 26.4 3.0 29 501-529 4-32 (173) 78 2qby_B CDC6 homolog 3, cell di 90.2 0.59 2.5E-05 22.6 5.8 51 474-526 20-70 (384) 79 3kb2_A SPBC2 prophage-derived 90.2 0.23 9.7E-06 25.3 3.7 27 503-529 3-29 (173) 80 3kta_A Chromosome segregation 90.1 0.28 1.2E-05 24.7 4.1 29 501-529 26-54 (182) 81 1azs_C GS-alpha; complex (lyas 90.0 0.3 1.3E-05 24.6 4.1 16 511-526 370-385 (402) 82 1znw_A Guanylate kinase, GMP k 89.9 0.2 8.4E-06 25.8 3.2 32 499-530 18-49 (207) 83 1ypw_A Transitional endoplasmi 89.9 0.2 8.3E-06 25.8 3.1 72 498-569 508-581 (806) 84 1w1w_A Structural maintenance 89.8 0.26 1.1E-05 25.0 3.7 19 72-90 33-51 (430) 85 1g8p_A Magnesium-chelatase 38 89.7 0.12 5E-06 27.2 1.9 154 466-631 18-213 (350) 86 1e6c_A Shikimate kinase; phosp 89.7 0.22 9.4E-06 25.4 3.3 27 504-530 5-31 (173) 87 1l2t_A Hypothetical ABC transp 89.7 0.13 5.4E-06 27.0 2.0 22 503-524 33-54 (235) 88 3a4m_A L-seryl-tRNA(SEC) kinas 89.6 0.27 1.1E-05 24.9 3.6 25 502-526 5-29 (260) 89 1ukz_A Uridylate kinase; trans 89.5 0.36 1.5E-05 24.0 4.3 32 498-529 12-43 (203) 90 2gza_A Type IV secretion syste 89.5 0.47 2E-05 23.3 4.8 83 435-526 116-200 (361) 91 1zuh_A Shikimate kinase; alpha 89.5 0.24 1E-05 25.2 3.3 27 503-529 9-35 (168) 92 2bwj_A Adenylate kinase 5; pho 89.4 0.27 1.2E-05 24.8 3.6 29 501-529 12-40 (199) 93 2ocp_A DGK, deoxyguanosine kin 89.3 0.39 1.7E-05 23.8 4.3 30 501-530 2-31 (241) 94 1w78_A FOLC bifunctional prote 89.2 0.4 1.7E-05 23.8 4.2 23 502-524 325-348 (422) 95 1qf9_A UMP/CMP kinase, protein 89.2 0.36 1.5E-05 24.1 4.0 29 501-529 6-34 (194) 96 3be4_A Adenylate kinase; malar 89.1 0.34 1.4E-05 24.2 3.9 42 674-717 168-212 (217) 97 2iyv_A Shikimate kinase, SK; t 89.1 0.27 1.2E-05 24.8 3.4 26 503-528 4-29 (184) 98 1tev_A UMP-CMP kinase; ploop, 89.1 0.35 1.5E-05 24.1 3.9 29 501-529 3-31 (196) 99 2f1r_A Molybdopterin-guanine d 89.1 0.17 7.3E-06 26.1 2.3 29 501-529 2-30 (171) 100 1via_A Shikimate kinase; struc 89.0 0.23 9.6E-06 25.4 2.9 30 501-530 4-33 (175) 101 1yqt_A RNAse L inhibitor; ATP- 88.9 0.28 1.2E-05 24.8 3.3 30 498-527 309-338 (538) 102 2yz2_A Putative ABC transporte 88.9 0.16 6.7E-06 26.4 2.0 18 506-523 38-55 (266) 103 1lvg_A Guanylate kinase, GMP k 88.8 0.27 1.1E-05 24.9 3.2 30 501-530 4-33 (198) 104 1mv5_A LMRA, multidrug resista 88.7 0.23 9.6E-06 25.4 2.7 29 499-527 26-54 (243) 105 2c95_A Adenylate kinase 1; AP4 88.6 0.37 1.5E-05 24.0 3.8 31 499-529 7-37 (196) 106 3gd7_A Fusion complex of cysti 88.6 0.22 9.4E-06 25.4 2.6 20 432-451 220-240 (390) 107 3lw7_A Adenylate kinase relate 88.5 0.29 1.2E-05 24.7 3.1 23 502-524 2-24 (179) 108 2qag_A Septin-2, protein NEDD5 88.5 0.21 8.8E-06 25.6 2.4 25 501-528 37-61 (361) 109 2pt7_A CAG-ALFA; ATPase, prote 88.4 0.32 1.3E-05 24.4 3.3 38 480-525 158-195 (330) 110 2j41_A Guanylate kinase; GMP, 88.3 0.38 1.6E-05 23.9 3.7 31 499-529 4-34 (207) 111 2gks_A Bifunctional SAT/APS ki 88.2 0.95 4E-05 21.3 5.7 46 479-528 354-399 (546) 112 3a8t_A Adenylate isopentenyltr 88.2 0.28 1.2E-05 24.8 2.9 72 493-567 31-103 (339) 113 2it1_A 362AA long hypothetical 88.2 0.24 9.9E-06 25.3 2.5 10 131-140 28-37 (362) 114 2vli_A Antibiotic resistance p 88.2 0.25 1.1E-05 25.0 2.7 28 502-529 6-33 (183) 115 3iij_A Coilin-interacting nucl 88.2 0.34 1.4E-05 24.2 3.4 26 503-528 13-38 (180) 116 1sgw_A Putative ABC transporte 88.2 0.14 6.1E-06 26.7 1.4 27 501-527 35-61 (214) 117 2aka_B Dynamin-1; fusion prote 88.1 0.44 1.8E-05 23.5 3.8 42 482-523 7-48 (299) 118 3lnc_A Guanylate kinase, GMP k 88.0 0.17 7.3E-06 26.2 1.7 30 501-530 27-56 (231) 119 2vp4_A Deoxynucleoside kinase; 87.9 0.32 1.4E-05 24.4 3.1 32 498-529 17-48 (230) 120 2pt5_A Shikimate kinase, SK; a 87.8 0.37 1.5E-05 24.0 3.3 26 504-529 3-28 (168) 121 2rgx_A Adenylate kinase; trans 87.7 0.43 1.8E-05 23.6 3.6 28 503-530 2-29 (206) 122 3lxw_A GTPase IMAP family memb 87.7 0.29 1.2E-05 24.7 2.7 25 501-528 21-45 (247) 123 3dhw_C Methionine import ATP-b 87.6 0.22 9.5E-06 25.4 2.1 11 513-523 279-289 (343) 124 2qen_A Walker-type ATPase; unk 87.6 0.73 3.1E-05 22.0 4.7 44 475-526 13-56 (350) 125 1ii8_A RAD50 ABC-ATPase; MRE11 87.6 0.4 1.7E-05 23.7 3.4 27 501-527 23-49 (195) 126 2cbz_A Multidrug resistance-as 87.5 0.22 9.1E-06 25.5 2.0 24 502-525 32-55 (237) 127 3aez_A Pantothenate kinase; tr 87.5 0.57 2.4E-05 22.7 4.2 27 501-527 90-116 (312) 128 1kgd_A CASK, peripheral plasma 87.5 0.52 2.2E-05 23.0 3.9 30 499-528 3-32 (180) 129 2nq2_C Hypothetical ABC transp 87.5 0.22 9.4E-06 25.4 2.1 24 502-525 32-55 (253) 130 3gmt_A Adenylate kinase; ssgci 87.5 0.42 1.8E-05 23.6 3.5 30 499-528 6-35 (230) 131 2eyu_A Twitching motility prot 87.4 0.45 1.9E-05 23.4 3.5 28 500-527 24-51 (261) 132 2jaq_A Deoxyguanosine kinase; 87.3 0.47 2E-05 23.3 3.6 26 503-528 2-27 (205) 133 2cdn_A Adenylate kinase; phosp 87.2 0.42 1.8E-05 23.6 3.3 36 493-529 13-48 (201) 134 1kht_A Adenylate kinase; phosp 87.2 0.4 1.7E-05 23.8 3.2 27 502-528 4-30 (192) 135 2pjz_A Hypothetical protein ST 87.2 0.23 9.7E-06 25.3 2.0 23 503-525 32-54 (263) 136 3k1j_A LON protease, ATP-depen 87.1 0.7 2.9E-05 22.1 4.4 22 159-180 207-228 (604) 137 2qnr_A Septin-2, protein NEDD5 87.0 0.31 1.3E-05 24.5 2.6 20 503-522 20-39 (301) 138 2ccj_A DTMP kinase, thymidylat 87.0 0.54 2.3E-05 22.9 3.8 26 501-526 2-27 (205) 139 1yrb_A ATP(GTP)binding protein 86.8 0.6 2.5E-05 22.6 4.0 26 501-526 14-39 (262) 140 3a00_A Guanylate kinase, GMP k 86.8 0.43 1.8E-05 23.5 3.2 28 502-529 2-29 (186) 141 2bbs_A Cystic fibrosis transme 86.8 0.27 1.1E-05 24.9 2.1 11 508-518 71-81 (290) 142 3nh6_A ATP-binding cassette SU 86.8 0.19 8.2E-06 25.8 1.4 19 505-523 84-102 (306) 143 3e1s_A Exodeoxyribonuclease V, 86.8 0.83 3.5E-05 21.6 4.6 23 503-525 206-228 (574) 144 3ney_A 55 kDa erythrocyte memb 86.7 0.57 2.4E-05 22.7 3.8 29 501-529 19-47 (197) 145 2kjq_A DNAA-related protein; s 86.7 0.43 1.8E-05 23.6 3.1 59 499-569 34-94 (149) 146 3f8t_A Predicted ATPase involv 86.6 0.87 3.7E-05 21.5 4.7 134 469-613 205-349 (506) 147 2xtp_A GTPase IMAP family memb 86.5 0.39 1.6E-05 23.8 2.8 24 501-527 22-45 (260) 148 2pze_A Cystic fibrosis transme 86.5 0.27 1.1E-05 24.9 2.0 16 506-521 39-54 (229) 149 2w58_A DNAI, primosome compone 86.4 0.72 3E-05 22.1 4.1 68 501-568 54-125 (202) 150 2wwf_A Thymidilate kinase, put 86.3 0.64 2.7E-05 22.4 3.9 30 499-528 8-37 (212) 151 1uf9_A TT1252 protein; P-loop, 86.3 0.62 2.6E-05 22.5 3.8 29 497-526 4-32 (203) 152 4tmk_A Protein (thymidylate ki 86.2 0.55 2.3E-05 22.8 3.5 26 502-527 4-29 (213) 153 1e4v_A Adenylate kinase; trans 86.1 0.55 2.3E-05 22.8 3.5 24 504-527 3-26 (214) 154 2x2e_A Dynamin-1; nitration, h 86.1 0.41 1.7E-05 23.7 2.8 15 506-520 31-45 (341) 155 1y63_A LMAJ004144AAA protein; 86.1 0.58 2.4E-05 22.7 3.6 33 501-533 10-42 (184) 156 2plr_A DTMP kinase, probable t 85.8 0.66 2.8E-05 22.3 3.7 27 501-527 4-30 (213) 157 3b5x_A Lipid A export ATP-bind 85.8 0.33 1.4E-05 24.3 2.2 30 499-528 367-396 (582) 158 1zak_A Adenylate kinase; ATP:A 85.8 0.59 2.5E-05 22.6 3.5 27 503-529 7-33 (222) 159 1f2t_A RAD50 ABC-ATPase; DNA d 85.7 0.59 2.5E-05 22.6 3.4 27 501-527 23-49 (149) 160 3lxx_A GTPase IMAP family memb 85.6 0.47 2E-05 23.3 2.9 25 501-528 29-53 (239) 161 1ak2_A Adenylate kinase isoenz 85.5 0.58 2.5E-05 22.7 3.3 41 674-716 179-222 (233) 162 2qi9_C Vitamin B12 import ATP- 85.5 0.5 2.1E-05 23.1 3.0 27 499-525 24-50 (249) 163 1x6v_B Bifunctional 3'-phospho 85.4 0.66 2.8E-05 22.3 3.6 26 663-688 591-620 (630) 164 1m7g_A Adenylylsulfate kinase; 85.4 0.82 3.5E-05 21.7 4.1 28 499-526 23-50 (211) 165 3gee_A MNME, tRNA modification 85.2 0.76 3.2E-05 21.9 3.8 44 482-528 213-257 (476) 166 1ji0_A ABC transporter; ATP bi 85.1 0.35 1.5E-05 24.1 2.0 23 503-525 34-56 (240) 167 2ze6_A Isopentenyl transferase 85.1 0.81 3.4E-05 21.7 3.9 72 502-576 2-73 (253) 168 1a7j_A Phosphoribulokinase; tr 85.1 0.31 1.3E-05 24.4 1.8 28 503-530 7-34 (290) 169 1p9r_A General secretion pathw 85.1 0.52 2.2E-05 23.0 2.9 27 500-526 166-192 (418) 170 2pbr_A DTMP kinase, thymidylat 85.0 0.7 2.9E-05 22.1 3.5 24 503-526 2-25 (195) 171 3b60_A Lipid A export ATP-bind 85.0 0.44 1.8E-05 23.5 2.5 31 499-529 367-397 (582) 172 1aky_A Adenylate kinase; ATP:A 84.9 0.65 2.7E-05 22.4 3.3 41 674-716 168-211 (220) 173 3lv8_A DTMP kinase, thymidylat 84.9 0.71 3E-05 22.1 3.5 28 500-527 26-53 (236) 174 2qor_A Guanylate kinase; phosp 84.9 0.59 2.5E-05 22.6 3.1 27 503-529 14-40 (204) 175 3fb4_A Adenylate kinase; psych 84.8 0.67 2.8E-05 22.3 3.4 26 504-529 3-28 (216) 176 2h17_A ADP-ribosylation factor 84.7 0.65 2.7E-05 22.3 3.3 33 490-522 10-42 (181) 177 2h57_A ADP-ribosylation factor 84.6 0.55 2.3E-05 22.8 2.9 34 488-521 8-41 (190) 178 2v1u_A Cell division control p 84.4 0.6 2.5E-05 22.6 3.0 48 477-526 22-69 (387) 179 2woj_A ATPase GET3; tail-ancho 84.3 0.94 4E-05 21.3 4.0 13 516-528 326-338 (354) 180 1zd8_A GTP:AMP phosphotransfer 84.3 0.72 3E-05 22.0 3.4 41 675-718 165-208 (227) 181 2ged_A SR-beta, signal recogni 84.3 1.2 5.2E-05 20.5 4.5 21 503-523 50-70 (193) 182 2fna_A Conserved hypothetical 84.2 0.86 3.6E-05 21.5 3.7 43 475-527 14-56 (357) 183 1ka8_A Putative P4-specific DN 84.0 1.5 6.5E-05 19.9 5.7 80 689-773 1-91 (100) 184 3jvv_A Twitching mobility prot 84.0 0.83 3.5E-05 21.6 3.5 26 500-525 122-147 (356) 185 3ec2_A DNA replication protein 83.9 1.5 6.5E-05 19.8 8.1 70 500-569 37-111 (180) 186 2xb4_A Adenylate kinase; ATP-b 83.8 0.78 3.3E-05 21.8 3.3 25 504-528 3-27 (223) 187 2qpt_A EH domain-containing pr 83.7 0.69 2.9E-05 22.2 3.0 13 514-526 382-394 (550) 188 1z6g_A Guanylate kinase; struc 83.7 0.87 3.6E-05 21.5 3.6 26 504-529 26-51 (218) 189 2p67_A LAO/AO transport system 83.6 1.6 6.7E-05 19.8 6.7 44 481-525 37-80 (341) 190 3foz_A TRNA delta(2)-isopenten 83.5 0.65 2.8E-05 22.3 2.9 15 504-518 13-27 (316) 191 1s96_A Guanylate kinase, GMP k 83.4 0.76 3.2E-05 21.9 3.2 27 501-527 16-42 (219) 192 2ewv_A Twitching motility prot 83.3 0.93 3.9E-05 21.3 3.6 27 500-526 135-161 (372) 193 1m8p_A Sulfate adenylyltransfe 83.3 1.4 6E-05 20.1 4.5 58 466-527 359-422 (573) 194 2qby_A CDC6 homolog 1, cell di 83.1 0.63 2.6E-05 22.4 2.6 42 704-748 301-345 (386) 195 2qm8_A GTPase/ATPase; G protei 83.0 1.7 7.1E-05 19.6 6.5 44 481-525 36-79 (337) 196 1yj5_A 5' polynucleotide kinas 82.7 0.78 3.3E-05 21.8 3.0 26 498-523 222-247 (383) 197 2v54_A DTMP kinase, thymidylat 82.5 1 4.2E-05 21.1 3.5 29 501-529 4-32 (204) 198 1p5z_B DCK, deoxycytidine kina 82.3 0.5 2.1E-05 23.1 1.9 35 500-534 23-57 (263) 199 1nn5_A Similar to deoxythymidy 82.3 0.97 4.1E-05 21.2 3.3 29 500-528 8-36 (215) 200 1q3t_A Cytidylate kinase; nucl 82.2 0.85 3.6E-05 21.6 3.1 32 498-529 12-44 (236) 201 2z0h_A DTMP kinase, thymidylat 82.2 1.1 4.5E-05 20.9 3.5 23 503-525 2-24 (197) 202 3iby_A Ferrous iron transport 82.1 0.86 3.6E-05 21.5 3.0 20 504-523 4-23 (256) 203 1dek_A Deoxynucleoside monopho 82.0 1.2 5E-05 20.6 3.7 26 503-528 3-28 (241) 204 3tmk_A Thymidylate kinase; pho 81.9 1.1 4.7E-05 20.8 3.5 27 501-527 5-31 (216) 205 1jwy_B Dynamin A GTPase domain 81.8 0.84 3.5E-05 21.6 2.9 20 503-522 26-45 (315) 206 3crm_A TRNA delta(2)-isopenten 81.8 0.75 3.1E-05 21.9 2.6 23 503-525 7-29 (323) 207 3dl0_A Adenylate kinase; phosp 81.7 1 4.3E-05 21.1 3.3 27 504-530 3-29 (216) 208 3def_A T7I23.11 protein; chlor 81.6 1.9 7.9E-05 19.3 5.4 43 483-529 19-61 (262) 209 3bk7_A ABC transporter ATP-bin 81.6 0.7 3E-05 22.1 2.4 29 498-526 379-407 (607) 210 2grj_A Dephospho-COA kinase; T 81.3 1.4 6E-05 20.1 4.0 30 498-527 9-38 (192) 211 3ld9_A DTMP kinase, thymidylat 81.2 1.2 4.8E-05 20.7 3.4 27 501-527 21-47 (223) 212 2if2_A Dephospho-COA kinase; a 81.2 1.1 4.6E-05 20.8 3.3 22 504-526 4-25 (204) 213 2bbw_A Adenylate kinase 4, AK4 81.1 1.1 4.8E-05 20.7 3.3 43 675-720 185-230 (246) 214 2vhj_A Ntpase P4, P4; non- hyd 81.0 0.79 3.3E-05 21.8 2.5 71 499-569 121-193 (331) 215 2woo_A ATPase GET3; tail-ancho 80.9 1.2 5.1E-05 20.5 3.5 17 503-519 21-37 (329) 216 3iqw_A Tail-anchored protein t 80.7 1.2 5.2E-05 20.5 3.4 10 63-72 45-54 (334) 217 3nrs_A Dihydrofolate:folylpoly 80.0 2.1 9E-05 18.9 5.0 12 500-511 344-355 (437) 218 2r2a_A Uncharacterized protein 79.9 1.4 5.9E-05 20.1 3.5 29 499-527 3-31 (199) 219 2wsm_A Hydrogenase expression/ 79.8 1.4 5.8E-05 20.2 3.4 26 502-527 31-56 (221) 220 2cxx_A Probable GTP-binding pr 79.6 1.1 4.8E-05 20.7 3.0 19 504-522 4-22 (190) 221 1qhl_A Protein (cell division 79.6 0.29 1.2E-05 24.7 -0.1 26 503-528 29-54 (227) 222 2dyk_A GTP-binding protein; GT 79.4 1.2 5.2E-05 20.5 3.1 19 504-522 4-22 (161) 223 1nrj_B SR-beta, signal recogni 79.4 1.3 5.3E-05 20.4 3.1 23 500-522 11-33 (218) 224 3geh_A MNME, tRNA modification 79.3 1.1 4.5E-05 20.9 2.8 26 499-524 222-247 (462) 225 2fh5_B SR-beta, signal recogni 79.3 1.3 5.6E-05 20.3 3.2 25 499-523 5-29 (214) 226 1tq4_A IIGP1, interferon-induc 79.2 1.2 5.1E-05 20.5 3.0 23 501-523 69-91 (413) 227 1wb9_A DNA mismatch repair pro 78.9 1.7 7.3E-05 19.5 3.7 74 500-573 606-701 (800) 228 1g8f_A Sulfate adenylyltransfe 78.5 2.4 9.9E-05 18.6 4.8 56 467-526 359-420 (511) 229 2hf9_A Probable hydrogenase ni 78.5 1.4 6.1E-05 20.0 3.2 24 502-525 39-62 (226) 230 1svi_A GTP-binding protein YSX 78.4 1.3 5.5E-05 20.3 3.0 20 503-522 25-44 (195) 231 2wjg_A FEOB, ferrous iron tran 78.4 2 8.4E-05 19.1 3.9 23 500-522 6-28 (188) 232 3p32_A Probable GTPase RV1496/ 78.3 2.4 0.0001 18.6 6.5 58 467-525 30-103 (355) 233 3cr8_A Sulfate adenylyltranfer 78.3 2.4 0.0001 18.6 5.2 57 467-527 333-395 (552) 234 3io3_A DEHA2D07832P; chaperone 78.2 1.5 6.5E-05 19.9 3.3 17 502-518 19-35 (348) 235 2o8b_B DNA mismatch repair pro 78.1 1.9 7.8E-05 19.3 3.7 83 500-582 788-898 (1022) 236 2iw3_A Elongation factor 3A; a 77.9 1.6 6.9E-05 19.7 3.4 22 504-525 702-723 (986) 237 3a1s_A Iron(II) transport prot 77.9 1.4 5.7E-05 20.2 2.9 19 504-522 8-26 (258) 238 1u0l_A Probable GTPase ENGC; p 77.9 1.3 5.3E-05 20.4 2.8 21 502-522 170-190 (301) 239 3i8s_A Ferrous iron transport 77.4 1.5 6.2E-05 20.0 3.0 19 504-522 6-24 (274) 240 1ega_A Protein (GTP-binding pr 77.2 1.7 7.1E-05 19.6 3.2 17 504-520 11-27 (301) 241 1jjv_A Dephospho-COA kinase; P 77.1 1.6 6.9E-05 19.7 3.2 24 503-527 4-27 (206) 242 2o8b_A DNA mismatch repair pro 77.0 1.9 8E-05 19.2 3.5 25 500-524 661-685 (934) 243 1lw7_A Transcriptional regulat 77.0 2.6 0.00011 18.3 5.1 24 503-526 172-195 (365) 244 1gtv_A TMK, thymidylate kinase 76.9 1.1 4.8E-05 20.7 2.3 25 503-527 2-26 (214) 245 3hdt_A Putative kinase; struct 76.7 2.6 0.00011 18.3 4.1 28 500-527 13-40 (223) 246 1f5n_A Interferon-induced guan 76.7 1.8 7.5E-05 19.4 3.3 20 134-153 65-84 (592) 247 2dpx_A GTP-binding protein RAD 76.7 1.9 8.2E-05 19.2 3.4 24 498-521 3-27 (174) 248 1zd9_A ADP-ribosylation factor 76.6 2.2 9.2E-05 18.8 3.7 31 492-522 12-43 (188) 249 1ky3_A GTP-binding protein YPT 76.6 1.7 7.1E-05 19.6 3.1 20 504-523 11-30 (182) 250 1ihu_A Arsenical pump-driving 76.4 1.9 8.1E-05 19.2 3.4 29 499-527 325-353 (589) 251 1ewq_A DNA mismatch repair pro 76.0 2.1 8.8E-05 19.0 3.5 156 501-687 576-759 (765) 252 1z0f_A RAB14, member RAS oncog 76.0 2.4 0.0001 18.5 3.8 33 490-522 3-36 (179) 253 3g5u_A MCG1178, multidrug resi 76.0 0.88 3.7E-05 21.5 1.5 26 502-527 1060-1085(1284) 254 2o5v_A DNA replication and rep 75.6 2.8 0.00012 18.1 4.3 12 606-617 323-334 (359) 255 2yv5_A YJEQ protein; hydrolase 75.5 1.8 7.6E-05 19.4 3.0 23 502-527 166-188 (302) 256 3llu_A RAS-related GTP-binding 75.2 1.9 7.9E-05 19.3 3.0 19 504-522 23-41 (196) 257 3iev_A GTP-binding protein ERA 75.1 2 8.5E-05 19.1 3.2 20 503-522 12-31 (308) 258 3lx5_A Ferrous iron uptake tra 75.1 1.8 7.6E-05 19.4 2.9 19 504-522 6-24 (272) 259 2npi_A Protein CLP1; CLP1-PCF1 75.0 2.1 8.6E-05 19.0 3.2 11 555-565 395-405 (460) 260 2rcn_A Probable GTPase ENGC; Y 75.0 1.7 7E-05 19.6 2.7 21 502-522 216-236 (358) 261 1upt_A ARL1, ADP-ribosylation 74.7 2 8.5E-05 19.1 3.1 22 501-522 7-28 (171) 262 1nlf_A Regulatory protein REPA 74.7 2 8.5E-05 19.1 3.1 22 501-522 30-51 (279) 263 2qu8_A Putative nucleolar GTP- 74.4 1.8 7.5E-05 19.4 2.8 23 500-522 28-50 (228) 264 2gj8_A MNME, tRNA modification 74.4 2 8.5E-05 19.1 3.0 19 504-522 7-25 (172) 265 1m2o_B GTP binding, GTP-bindin 74.2 2.3 9.8E-05 18.6 3.3 24 500-523 22-45 (190) 266 2hxs_A RAB-26, RAS-related pro 74.2 2.7 0.00011 18.2 3.6 25 497-521 2-26 (178) 267 3h2y_A GTPase family protein; 73.8 3.1 0.00013 17.8 4.2 23 504-526 163-185 (368) 268 2c9o_A RUVB-like 1; hexameric 73.6 3.2 0.00013 17.8 6.1 25 502-526 64-88 (456) 269 2hyd_A ABC transporter homolog 73.5 0.72 3E-05 22.1 0.6 31 499-529 365-395 (578) 270 1cke_A CK, MSSA, protein (cyti 73.4 2.8 0.00012 18.1 3.6 28 503-530 7-34 (227) 271 1g16_A RAS-related protein SEC 73.0 2.5 0.0001 18.5 3.2 19 504-522 6-24 (170) 272 1oix_A RAS-related protein RAB 73.0 2.5 0.0001 18.5 3.2 20 504-523 32-51 (191) 273 2efe_B Small GTP-binding prote 72.8 3 0.00013 18.0 3.6 30 493-522 4-33 (181) 274 1ksh_A ARF-like protein 2; sma 72.7 2.1 8.8E-05 19.0 2.8 25 501-528 18-42 (186) 275 1fzq_A ADP-ribosylation factor 72.6 3.2 0.00013 17.8 3.7 23 499-521 14-36 (181) 276 2ga8_A Hypothetical 39.9 kDa p 72.1 3.4 0.00014 17.5 5.8 44 481-526 6-49 (359) 277 3k53_A Ferrous iron transport 71.8 2.6 0.00011 18.4 3.1 19 504-522 6-24 (271) 278 1f6b_A SAR1; gtpases, N-termin 71.8 3.1 0.00013 17.9 3.5 21 501-521 25-45 (198) 279 2wji_A Ferrous iron transport 71.7 2.4 0.0001 18.5 2.9 21 502-522 4-24 (165) 280 2h92_A Cytidylate kinase; ross 71.5 2 8.2E-05 19.2 2.4 26 504-529 6-31 (219) 281 1vg8_A RAS-related protein RAB 71.4 2.7 0.00011 18.3 3.1 20 504-523 11-30 (207) 282 1l8q_A Chromosomal replication 71.2 3.1 0.00013 17.9 3.3 112 504-628 40-157 (324) 283 2e87_A Hypothetical protein PH 71.2 2.4 1E-04 18.6 2.8 22 502-523 168-189 (357) 284 1xjc_A MOBB protein homolog; s 70.9 3.2 0.00014 17.7 3.4 26 502-527 5-30 (169) 285 2fn4_A P23, RAS-related protei 70.5 3.7 0.00016 17.3 4.2 25 499-523 7-31 (181) 286 1vht_A Dephospho-COA kinase; s 70.4 3.6 0.00015 17.4 3.5 24 502-526 5-28 (218) 287 1zj6_A ADP-ribosylation factor 70.3 3.8 0.00016 17.3 3.8 22 501-522 16-37 (187) 288 2bme_A RAB4A, RAS-related prot 70.1 3.1 0.00013 17.8 3.2 20 504-523 13-32 (186) 289 2qgz_A Helicase loader, putati 70.0 3.8 0.00016 17.2 8.2 82 488-569 139-225 (308) 290 3bc1_A RAS-related protein RAB 70.0 3.8 0.00016 17.2 4.0 22 501-522 11-32 (195) 291 2x77_A ADP-ribosylation factor 69.8 1.9 8E-05 19.2 2.0 27 494-521 16-42 (189) 292 3ec1_A YQEH GTPase; atnos1, at 69.6 3.1 0.00013 17.8 3.1 22 504-525 165-186 (369) 293 1z06_A RAS-related protein RAB 69.6 3.1 0.00013 17.8 3.1 20 503-522 22-41 (189) 294 1t9h_A YLOQ, probable GTPase E 69.5 1.3 5.6E-05 20.3 1.2 21 501-521 173-193 (307) 295 3eag_A UDP-N-acetylmuramate:L- 69.2 2 8.5E-05 19.1 2.1 21 507-527 111-132 (326) 296 2ehv_A Hypothetical protein PH 69.1 3.6 0.00015 17.4 3.3 31 494-524 23-54 (251) 297 2ce2_X GTPase HRAS; signaling 69.1 3.4 0.00014 17.6 3.2 20 504-523 6-25 (166) 298 1yzq_A Small GTP binding prote 69.1 3.6 0.00015 17.4 3.3 22 502-523 7-28 (170) 299 1jal_A YCHF protein; nucleotid 69.0 2.6 0.00011 18.3 2.6 10 482-491 269-278 (363) 300 1pui_A ENGB, probable GTP-bind 69.0 1.4 6.1E-05 20.0 1.3 20 502-521 27-46 (210) 301 2a5y_B CED-4; apoptosis; HET: 69.0 4 0.00017 17.1 6.5 44 477-523 131-174 (549) 302 2px0_A Flagellar biosynthesis 68.9 4 0.00017 17.1 5.0 46 479-524 78-128 (296) 303 1r8s_A ADP-ribosylation factor 68.4 3.4 0.00014 17.5 3.1 19 504-522 3-21 (164) 304 1r2q_A RAS-related protein RAB 68.4 4.1 0.00017 17.0 3.6 19 504-522 9-27 (170) 305 3iyt_A APAF-1, apoptotic prote 68.2 4.1 0.00017 17.0 5.1 10 63-72 186-195 (1263) 306 2b6h_A ADP-ribosylation factor 68.0 3.2 0.00013 17.8 2.9 19 503-521 31-49 (192) 307 2f6r_A COA synthase, bifunctio 67.9 4.2 0.00018 17.0 4.1 26 501-527 75-100 (281) 308 2oil_A CATX-8, RAS-related pro 67.8 3.5 0.00015 17.5 3.1 20 504-523 28-47 (193) 309 1xzp_A Probable tRNA modificat 67.7 2.1 8.8E-05 19.0 1.9 25 499-523 241-265 (482) 310 2ew1_A RAS-related protein RAB 67.4 3.9 0.00016 17.2 3.2 19 504-522 29-47 (201) 311 1p6x_A Thymidine kinase; P-loo 67.2 3.9 0.00016 17.2 3.2 22 65-86 7-28 (334) 312 2qtf_A Protein HFLX, GTP-bindi 67.2 3.4 0.00014 17.6 2.9 23 501-523 179-201 (364) 313 2f9l_A RAB11B, member RAS onco 67.1 3.7 0.00016 17.3 3.1 19 504-522 8-26 (199) 314 2www_A Methylmalonic aciduria 67.1 4.4 0.00018 16.9 7.2 30 498-527 71-101 (349) 315 2g6b_A RAS-related protein RAB 66.9 3.8 0.00016 17.2 3.1 19 504-522 13-31 (180) 316 2w0m_A SSO2452; RECA, SSPF, un 66.9 4.4 0.00019 16.8 3.5 28 494-521 16-43 (235) 317 3dz8_A RAS-related protein RAB 66.6 4.1 0.00017 17.0 3.2 18 504-521 26-43 (191) 318 1j6u_A UDP-N-acetylmuramate-al 66.6 2.4 0.0001 18.5 2.0 15 10-24 29-43 (469) 319 1ek0_A Protein (GTP-binding pr 66.5 4 0.00017 17.1 3.1 19 504-522 6-24 (170) 320 1z08_A RAS-related protein RAB 66.3 4 0.00017 17.1 3.1 19 504-522 9-27 (170) 321 1c1y_A RAS-related protein RAP 66.2 4 0.00017 17.1 3.1 19 504-522 6-24 (167) 322 2zej_A Dardarin, leucine-rich 66.2 3.4 0.00014 17.6 2.7 18 504-521 5-22 (184) 323 1g41_A Heat shock protein HSLU 66.0 4.6 0.00019 16.7 3.5 13 557-569 249-261 (444) 324 3o47_A ADP-ribosylation factor 65.9 2.9 0.00012 18.0 2.3 23 499-521 163-185 (329) 325 2dr3_A UPF0273 protein PH0284; 65.9 4.6 0.00019 16.7 3.6 32 494-525 16-48 (247) 326 1moz_A ARL1, ADP-ribosylation 65.7 2.6 0.00011 18.4 2.0 27 494-521 12-38 (183) 327 2p5s_A RAS and EF-hand domain 65.6 4.1 0.00017 17.0 3.1 20 503-522 30-49 (199) 328 3lvq_E ARF-GAP with SH3 domain 65.4 4.7 0.0002 16.6 3.7 28 495-522 316-343 (497) 329 1x3s_A RAS-related protein RAB 65.1 4.4 0.00018 16.8 3.1 20 504-523 18-37 (195) 330 3igf_A ALL4481 protein; two-do 64.7 3.4 0.00014 17.5 2.5 10 623-632 357-366 (374) 331 2am1_A SP protein, UDP-N-acety 64.7 2.3 9.7E-05 18.7 1.6 11 579-589 427-437 (454) 332 2erx_A GTP-binding protein DI- 64.7 4.1 0.00017 17.0 2.9 19 504-522 6-24 (172) 333 3f9v_A Minichromosome maintena 64.4 0.8 3.4E-05 21.7 -0.8 129 485-615 302-446 (595) 334 1z0j_A RAB-22, RAS-related pro 64.2 4.9 0.00021 16.5 3.8 23 500-522 5-27 (170) 335 2gco_A H9, RHO-related GTP-bin 64.1 4.9 0.00021 16.5 3.2 20 503-522 27-46 (201) 336 2gf9_A RAS-related protein RAB 64.0 4.7 0.0002 16.6 3.1 33 491-523 11-44 (189) 337 3cbq_A GTP-binding protein REM 63.7 3.3 0.00014 17.7 2.3 17 504-520 26-42 (195) 338 3fdi_A Uncharacterized protein 63.7 4.5 0.00019 16.7 3.0 28 500-527 4-32 (201) 339 2qmh_A HPR kinase/phosphorylas 63.6 4.8 0.0002 16.6 3.1 18 501-518 34-51 (205) 340 3gj0_A GTP-binding nuclear pro 63.6 4.6 0.00019 16.7 3.0 28 495-522 9-36 (221) 341 1u8z_A RAS-related protein RAL 63.5 4.9 0.00021 16.5 3.1 18 504-521 7-24 (168) 342 1of1_A Thymidine kinase; trans 63.4 2.9 0.00012 18.1 1.9 19 651-669 303-321 (376) 343 2wtz_A UDP-N-acetylmuramoyl-L- 63.0 5.2 0.00022 16.4 5.0 15 578-592 489-503 (535) 344 2f00_A UDP-N-acetylmuramate--L 62.9 3.2 0.00013 17.8 2.1 13 10-22 36-48 (491) 345 1n0w_A DNA repair protein RAD5 62.9 5.2 0.00022 16.3 3.4 29 494-522 17-45 (243) 346 3con_A GTPase NRAS; structural 62.9 5.1 0.00021 16.4 3.1 20 504-523 24-43 (190) 347 2g3y_A GTP-binding protein GEM 62.8 4.7 0.0002 16.6 2.9 19 504-522 40-58 (211) 348 2a9k_A RAS-related protein RAL 62.3 5.3 0.00022 16.3 3.1 19 504-522 21-39 (187) 349 3ihw_A Centg3; RAS, centaurin, 62.3 5.3 0.00022 16.3 3.1 21 502-522 21-41 (184) 350 3hn7_A UDP-N-acetylmuramate-L- 62.3 3.3 0.00014 17.7 2.0 15 10-24 36-50 (524) 351 2o52_A RAS-related protein RAB 62.2 5.2 0.00022 16.4 3.0 19 504-522 28-46 (200) 352 1e2k_A Thymidine kinase; trans 62.2 2.4 0.0001 18.5 1.4 19 651-669 258-276 (331) 353 2cvh_A DNA repair and recombin 62.0 5.4 0.00023 16.2 4.1 29 493-521 12-40 (220) 354 1np6_A Molybdopterin-guanine d 61.8 5.1 0.00021 16.4 3.0 26 502-527 7-32 (174) 355 1mky_A Probable GTP-binding pr 61.8 5 0.00021 16.4 2.9 22 502-523 181-202 (439) 356 3bwd_D RAC-like GTP-binding pr 61.5 5.5 0.00023 16.2 3.1 20 503-522 10-29 (182) 357 1osn_A Thymidine kinase, VZV-T 61.5 5.5 0.00023 16.2 3.4 21 65-85 12-32 (341) 358 3cpj_B GTP-binding protein YPT 61.1 5.6 0.00023 16.2 3.0 19 504-522 16-34 (223) 359 2j1l_A RHO-related GTP-binding 61.1 5.5 0.00023 16.2 3.0 21 501-521 34-54 (214) 360 1udx_A The GTP-binding protein 61.0 4 0.00017 17.1 2.3 15 126-140 104-119 (416) 361 2f7s_A C25KG, RAS-related prot 61.0 5.2 0.00022 16.4 2.9 21 502-522 26-46 (217) 362 3cnl_A YLQF, putative uncharac 60.9 5.6 0.00024 16.1 3.0 60 457-522 55-120 (262) 363 2il1_A RAB12; G-protein, GDP, 60.8 5 0.00021 16.4 2.8 19 503-521 28-46 (192) 364 3cph_A RAS-related protein SEC 60.4 5.7 0.00024 16.1 3.1 19 504-522 23-41 (213) 365 1lnz_A SPO0B-associated GTP-bi 60.3 3.7 0.00015 17.3 2.0 15 126-140 105-120 (342) 366 1zbd_A Rabphilin-3A; G protein 60.2 5.6 0.00024 16.1 2.9 18 504-521 11-28 (203) 367 2gk6_A Regulator of nonsense t 60.0 5.9 0.00025 16.0 5.2 13 660-672 484-496 (624) 368 1xtq_A GTP-binding protein RHE 59.9 5.9 0.00025 16.0 3.2 20 503-522 8-27 (177) 369 1e9r_A Conjugal transfer prote 59.5 5.1 0.00021 16.4 2.6 40 488-531 327-366 (437) 370 1m7b_A RND3/RHOE small GTP-bin 59.5 6 0.00025 16.0 3.7 22 501-522 7-28 (184) 371 2atx_A Small GTP binding prote 59.4 6 0.00025 15.9 3.2 19 504-522 21-39 (194) 372 1e8c_A UDP-N-acetylmuramoylala 59.3 6 0.00025 15.9 4.1 20 578-597 451-470 (498) 373 2bov_A RAla, RAS-related prote 59.2 6 0.00025 15.9 3.8 22 501-522 13-35 (206) 374 1gwn_A RHO-related GTP-binding 58.7 6.1 0.00026 15.9 3.7 21 501-521 28-48 (205) 375 2fu5_C RAS-related protein RAB 58.5 3.2 0.00013 17.8 1.4 19 504-522 11-29 (183) 376 2nzj_A GTP-binding protein REM 58.2 6.3 0.00026 15.8 2.9 18 504-521 7-24 (175) 377 3kkq_A RAS-related protein M-R 57.8 6.4 0.00027 15.8 3.1 21 503-523 20-40 (183) 378 1wms_A RAB-9, RAB9, RAS-relate 57.6 6.4 0.00027 15.7 3.1 19 504-522 10-28 (177) 379 2a5j_A RAS-related protein RAB 57.2 6.5 0.00027 15.7 3.1 19 504-522 24-42 (191) 380 2fv8_A H6, RHO-related GTP-bin 57.1 6.5 0.00027 15.7 3.2 20 503-522 27-46 (207) 381 2z4s_A Chromosomal replication 57.0 6.5 0.00028 15.7 3.3 113 503-628 132-253 (440) 382 2hup_A RAS-related protein RAB 56.9 6.6 0.00028 15.7 3.2 19 504-522 32-50 (201) 383 2fg5_A RAB-22B, RAS-related pr 56.8 6.6 0.00028 15.7 3.2 22 501-522 23-44 (192) 384 1kao_A RAP2A; GTP-binding prot 56.2 6.8 0.00028 15.6 3.1 19 504-522 6-24 (167) 385 2hjg_A GTP-binding protein ENG 56.0 6.8 0.00028 15.6 2.8 24 502-528 176-199 (436) 386 2atv_A RERG, RAS-like estrogen 55.9 6.8 0.00029 15.6 3.1 22 501-522 28-49 (196) 387 2afh_E Nitrogenase iron protei 55.9 6.8 0.00029 15.6 3.8 40 710-749 232-275 (289) 388 3bbp_A RAB-6, RAS-related prot 55.4 7 0.00029 15.5 3.0 32 491-522 3-37 (211) 389 2cjw_A GTP-binding protein GEM 54.9 7.1 0.0003 15.5 3.1 21 504-524 9-29 (192) 390 1z2a_A RAS-related protein RAB 54.8 7.1 0.0003 15.4 3.1 19 504-522 8-26 (168) 391 2q3h_A RAS homolog gene family 54.2 7.3 0.00031 15.4 2.9 20 502-521 21-40 (201) 392 3c5c_A RAS-like protein 12; GD 53.9 7.3 0.00031 15.4 3.6 23 501-523 21-43 (187) 393 2ph1_A Nucleotide-binding prot 53.7 7.4 0.00031 15.3 3.4 25 501-525 19-43 (262) 394 1mh1_A RAC1; GTP-binding, GTPa 53.4 7.5 0.00031 15.3 3.1 20 503-522 7-26 (186) 395 2rex_B RHO-related GTP-binding 52.3 7.8 0.00033 15.2 3.1 23 500-522 9-31 (197) 396 1a5t_A Delta prime, HOLB; zinc 52.1 7.8 0.00033 15.2 3.7 27 499-525 22-48 (334) 397 2gf0_A GTP-binding protein DI- 50.5 8.3 0.00035 15.0 4.0 21 502-522 9-29 (199) 398 2vf7_A UVRA2, excinuclease ABC 50.2 7.6 0.00032 15.3 2.3 18 502-519 524-541 (842) 399 2r6f_A Excinuclease ABC subuni 50.0 7.9 0.00033 15.1 2.3 19 501-519 650-668 (972) 400 1cr0_A DNA primase/helicase; R 49.8 8.5 0.00036 14.9 3.6 10 436-445 265-274 (296) 401 3oes_A GTPase rhebl1; small GT 49.5 8.6 0.00036 14.9 3.2 19 504-522 27-45 (201) 402 1puj_A YLQF, conserved hypothe 49.3 8.6 0.00036 14.9 4.1 25 498-522 117-141 (282) 403 2qy9_A Cell division protein F 48.3 9 0.00038 14.8 4.9 26 501-526 99-124 (309) 404 3clv_A RAB5 protein, putative; 48.1 9 0.00038 14.8 3.1 20 504-523 10-29 (208) 405 1cp2_A CP2, nitrogenase iron p 47.7 9.1 0.00038 14.7 3.8 21 506-526 6-26 (269) 406 3hws_A ATP-dependent CLP prote 46.0 9.7 0.00041 14.5 5.7 63 467-529 7-79 (363) 407 1c9k_A COBU, adenosylcobinamid 45.5 9.9 0.00042 14.5 2.5 19 503-521 1-19 (180) 408 2iwr_A Centaurin gamma 1; ANK 45.3 9.9 0.00042 14.5 2.7 21 501-521 7-27 (178) 409 1bif_A 6-phosphofructo-2-kinas 45.1 10 0.00042 14.5 3.6 11 516-526 394-404 (469) 410 3n70_A Transport activator; si 44.8 10 0.00042 14.4 4.7 46 475-524 2-47 (145) 411 2v1x_A ATP-dependent DNA helic 44.4 10 0.00043 14.4 3.6 11 485-495 392-402 (591) 412 2j0v_A RAC-like GTP-binding pr 43.6 11 0.00044 14.3 3.2 19 504-522 12-30 (212) 413 1byi_A Dethiobiotin synthase; 43.0 11 0.00045 14.2 3.9 22 504-525 4-26 (224) 414 2d59_A Hypothetical protein PH 40.7 12 0.00049 14.0 2.9 19 41-59 10-30 (144) 415 1tf7_A KAIC; homohexamer, hexa 40.4 12 0.00049 14.0 3.6 29 494-522 274-302 (525) 416 3ff4_A Uncharacterized protein 40.1 12 0.0005 14.0 2.3 16 11-26 25-40 (122) 417 2gno_A DNA polymerase III, gam 40.0 12 0.0005 13.9 5.3 130 479-634 2-140 (305) 418 3llm_A ATP-dependent RNA helic 39.8 12 0.00051 13.9 2.5 22 499-520 74-95 (235) 419 2i1q_A DNA repair and recombin 38.9 12 0.00052 13.8 3.6 24 495-518 92-115 (322) 420 1ls1_A Signal recognition part 38.8 12 0.00052 13.8 4.0 27 499-525 96-122 (295) 421 2wjy_A Regulator of nonsense t 37.5 13 0.00055 13.7 5.2 24 502-525 372-396 (800) 422 1oyw_A RECQ helicase, ATP-depe 37.0 13 0.00056 13.6 3.0 24 7-30 30-54 (523) 423 3l0i_B RAS-related protein RAB 36.9 6 0.00025 15.9 0.0 28 493-520 22-52 (199) 424 1g3q_A MIND ATPase, cell divis 36.5 14 0.00057 13.6 3.3 14 63-76 32-45 (237) 425 3cwq_A Para family chromosome 36.4 14 0.00057 13.6 3.7 24 503-526 3-26 (209) 426 3b9q_A Chloroplast SRP recepto 33.1 15 0.00064 13.2 6.8 26 501-526 100-125 (302) 427 3bs4_A Uncharacterized protein 32.8 15 0.00065 13.2 4.0 25 494-518 14-38 (260) 428 1pzn_A RAD51, DNA repair and r 32.7 15 0.00065 13.2 4.0 15 159-173 37-51 (349) 429 2og2_A Putative signal recogni 32.6 16 0.00065 13.2 6.8 25 501-525 157-181 (359) 430 2z43_A DNA repair and recombin 32.2 16 0.00066 13.1 3.7 29 493-521 99-127 (324) 431 3ea0_A ATPase, para family; al 31.7 16 0.00067 13.1 4.0 24 503-526 7-30 (245) 432 1v5w_A DMC1, meiotic recombina 31.6 16 0.00068 13.1 4.2 29 494-522 115-143 (343) 433 1q57_A DNA primase/helicase; d 31.1 16 0.00069 13.0 3.1 14 36-49 18-31 (503) 434 3co5_A Putative two-component 30.8 15 0.00064 13.2 1.3 43 476-523 6-49 (143) 435 1j8m_F SRP54, signal recogniti 30.1 17 0.00072 12.9 6.5 25 501-525 98-122 (297) 436 2ax3_A Hypothetical protein TM 29.4 16 0.00068 13.1 1.2 12 52-63 53-64 (502) 437 1wcv_1 SOJ, segregation protei 29.0 18 0.00075 12.8 2.4 26 501-526 7-32 (257) 438 2o8n_A APOA-I binding protein; 28.6 18 0.00076 12.8 1.4 17 501-517 80-96 (265) 439 3h20_A Replication protein B; 28.6 18 0.00076 12.7 8.9 103 6-111 7-114 (323) 440 2bjv_A PSP operon transcriptio 28.5 18 0.00076 12.7 5.4 197 471-687 3-221 (265) 441 1y81_A Conserved hypothetical 28.1 18 0.00078 12.7 2.9 13 165-177 77-89 (138) 442 3lda_A DNA repair protein RAD5 27.9 19 0.00078 12.7 3.4 24 496-519 173-196 (400) 443 1zu4_A FTSY; GTPase, signal re 27.3 19 0.0008 12.6 6.6 27 500-526 104-130 (320) 444 1r5b_A Eukaryotic peptide chai 26.2 20 0.00084 12.5 3.6 29 498-526 40-68 (467) 445 1vma_A Cell division protein F 26.1 20 0.00084 12.5 6.9 59 467-525 63-128 (306) 446 1jzt_A Hypothetical 27.5 kDa p 25.8 16 0.00069 13.0 0.7 15 499-513 57-71 (246) 447 3e70_C DPA, signal recognition 25.3 21 0.00087 12.4 6.8 48 478-525 95-153 (328) 448 3fkq_A NTRC-like two-domain pr 24.4 21 0.0009 12.3 3.9 30 496-525 139-168 (373) 449 2q6t_A DNAB replication FORK h 23.3 23 0.00095 12.1 3.8 30 494-523 193-222 (444) 450 3mca_A HBS1, elongation factor 23.2 23 0.00095 12.1 4.0 30 497-526 173-202 (592) 451 3b85_A Phosphate starvation-in 23.1 23 0.00095 12.1 3.7 33 487-524 12-44 (208) 452 3fgn_A Dethiobiotin synthetase 23.1 23 0.00096 12.1 3.9 24 502-525 27-51 (251) 453 2ffh_A Protein (FFH); SRP54, s 22.9 23 0.00096 12.1 6.7 46 480-525 72-122 (425) 454 2c78_A Elongation factor TU-A; 22.5 23 0.00098 12.0 3.7 30 497-526 7-36 (405) 455 1hyq_A MIND, cell division inh 22.5 23 0.00098 12.0 3.4 28 501-528 3-30 (263) 456 3end_A Light-independent proto 22.3 24 0.00099 12.0 3.5 24 501-525 42-65 (307) 457 1ojl_A Transcriptional regulat 20.5 26 0.0011 11.7 3.2 21 504-524 28-48 (304) 458 2p65_A Hypothetical protein PF 20.4 26 0.0011 11.7 3.5 47 473-525 21-67 (187) 459 1rj9_A FTSY, signal recognitio 20.4 26 0.0011 11.7 3.6 28 498-525 99-126 (304) 460 2v3c_C SRP54, signal recogniti 20.3 26 0.0011 11.7 5.8 46 480-525 71-123 (432) No 1 >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Probab=99.94 E-value=6.1e-29 Score=208.49 Aligned_cols=216 Identities=9% Similarity=0.026 Sum_probs=166.4 Q ss_pred ECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC Q ss_conf 07937974388855898655010013788887579478999998887999999999999999975987433799997078 Q gi|254781225|r 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 (789) Q Consensus 431 ~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G 510 (789) ++|++.+.+...++.+.+.+|++...+.... ..+.+.+||.- .+- + ..++..++...|.+.+..+.+++++|+| T Consensus 40 vk~~~~~~~~~~~~~~~~~~~i~~~~~~~d~---~~~~i~~~l~~-q~~-~-~~~~~~~l~~~l~~~~~k~n~~~l~Gp~ 113 (267) T 1u0j_A 40 IKAALDNAGKIMSLTKTAPDYLVGQQPVEDI---SSNRIYKILEL-NGY-D-PQYAASVFLGWATKKFGKRNTIWLFGPA 113 (267) T ss_dssp HHHHHHHHHHHHHHHCCHHHHHSCSSCCSCG---GGCHHHHHHHH-TTC-C-HHHHHHHHHHHHTTCSTTCCEEEEECST T ss_pred HHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC---CHHHHHHHHHH-CCC-C-HHHHHHHHHHHHCCCCCCCEEEEEECCC T ss_conf 9999999999998746999995535866777---61799999987-598-8-8999999999973799762699998899 Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEE Q ss_conf 86257899999997233000344267642012455556898899738980999934677760131002454159858732 Q gi|254781225|r 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 (789) Q Consensus 511 ~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar 590 (789) +||||+|+++|..++|.+++... .+.++.++.|.|+|+++.+|+..... ..+.+|+|+|||+|.++ T Consensus 114 ~tGKS~f~~~i~~~~g~~~~~~~-------------~~s~F~l~~l~~~~~~~~~e~~~~~~-~~~~~K~l~gGd~v~vd 179 (267) T 1u0j_A 114 TTGKTNIAEAIAHTVPFYGCVNW-------------TNENFPFNDCVDKMVIWWEEGKMTAK-VVESAKAILGGSKVRVD 179 (267) T ss_dssp TSSHHHHHHHHHHHSSCEEECCT-------------TCSSCTTGGGSSCSEEEECSCCEETT-THHHHHHHHTTCCEEC- T ss_pred CCCHHHHHHHHHHHHCCCEEECC-------------CCCCCCCCCCCCCEEEEEECCCCCHH-HHHHHHHHCCCCCEEEE T ss_conf 88789999999998273145247-------------78887666667987999958986222-89999987489936875 Q ss_pred ECCCCCCEEEECCEEEEEECCCCCCCCCC-------CCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH Q ss_conf 10478606871452899973886342679-------84166468999658878887878334220120447999999999 Q gi|254781225|r 591 LNYGNTYSESPASFTPFIVPNKHLFVRNP-------DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663 (789) Q Consensus 591 ~~~~~~~~~~~p~~~~~~~~N~~P~~~~~-------d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i~~w~l~g~ 663 (789) .||++++ +++|+.++++++|++|.+.+. +.|++||+++++|+++||.... .+...|..++++|+.+++ T Consensus 180 ~K~k~~~-~~~~~p~li~snndi~~~~~~~~~s~~~~~~l~~R~~~~~F~~~~p~~~~----~i~~~e~~~f~~W~~~~~ 254 (267) T 1u0j_A 180 QKCKSSA-QIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFG----KVTKQEVKDFFRWAKDHV 254 (267) T ss_dssp -----CC-EECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSC----CCCHHHHHHHHHHHHHTC T ss_pred ECCCCCE-EEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHEEEEECCCCCCCCCC----CCCHHHHHHHHHHHHHCC T ss_conf 1468873-84176089994897765568775531020454650799878982797668----768899999999998366 Q ss_pred HHHHHCCC Q ss_conf 99998788 Q gi|254781225|r 664 KAYISKGL 671 (789) Q Consensus 664 ~~~~~~g~ 671 (789) .++.++.. T Consensus 255 ~~~~~~~~ 262 (267) T 1u0j_A 255 VEVEHEFY 262 (267) T ss_dssp CCCCCCSB T ss_pred HHHHHHHC T ss_conf 14467640 No 2 >3m1m_A ORF904; primase, polymerase, plasmid, replication; 1.85A {Sulfolobus islandicus} Probab=99.90 E-value=4.1e-24 Score=176.44 Aligned_cols=186 Identities=21% Similarity=0.286 Sum_probs=126.8 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCC--CCCCCCCCCCCHHHHHHH----H-HCCEEEEECCCCCCEEEEEEECCCC Q ss_conf 67888878999977985977356778787--756545656898999742----0-0788999234779879999646881 Q gi|254781225|r 3 VMQWKEQAKQAIHNGFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKL----P-ACGFGFVCGVGEQPLYAFDIDSKDE 75 (789) Q Consensus 3 ~~~~~~~~~~~i~~G~~viPi~pg~KrP~--~~~~w~~~~~~~~~i~~~----~-~~giGi~~G~~s~glv~iDiD~~d~ 75 (789) .+|| |.+|++.||+|||+.|++|+|+ .|.+|++.+++.++|++| | ++||||+||. +|+||||||..++ T Consensus 8 ~L~~---Al~Yae~G~sVfPL~Pg~K~P~ik~Wk~yq~~~pt~eEI~~Ww~~~P~a~NIGI~TG~--sGLVVLDiD~keg 82 (335) T 3m1m_A 8 RIRY---AKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ--KGLVILDFESKEK 82 (335) T ss_dssp HHHH---HHHHHHTTCCCEEECTTTSSBSSTTGGGGGTSCCCHHHHHHHHHHHHTTCEEEEESSG--GGEEEEEESCHHH T ss_pred HHHH---HHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC--CCEEEEECCCCCC T ss_conf 9999---9999987996886689998887778632046897999999999749875548997288--8889998978642 Q ss_pred HHHHHHHHHHHHC-CCCCEEEECCCCCEEEEEEECCCCCCCC--CCCCCCCCCEEEECCCCEEEECCCC----------- Q ss_conf 2567899987641-8997699678896599995073102445--4444576753485268438804776----------- Q gi|254781225|r 76 KTANTFKDTFEIL-HGTPIVRIGQKPKILIPFRMNKEGIKKK--KTTESTQGHLDILGCGQYFVAYNIH----------- 141 (789) Q Consensus 76 ~~~~~~~~~~~~l-~g~p~~~~g~~~~~~~~yr~~~~~~~~~--~~~~~~~~~iEi~~~G~q~V~~gsh----------- 141 (789) .........+..+ ..+..++++ .|+.|++|+.+..+..+. .+....++.+||++.|+|||+|||. T Consensus 83 ~~~~~~~~~L~~li~~T~~VkTP-SGG~HLYfr~~e~Pp~k~~p~~~~~G~gviDirs~ggYVVaPGS~inh~~~~~~k~ 161 (335) T 3m1m_A 83 LKAWIGESALEELCRKTLCTNTV-HGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKC 161 (335) T ss_dssp HHHHHCHHHHHHHHHHSCEEECT-TSCEEEEEECSSCCSSCEEEEEEETTEEEEEEECTTCEEECTTCEEEGGGCCSTTC T ss_pred HHHHHHHHHHHHCCCCCEEEECC-CCCEEEEEECCCCCHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCC T ss_conf 24554345666317787699899-99189999789988232265422478742778548978988820204556666678 Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 88887457517765587221646899999999976200124345432345543222345 Q gi|254781225|r 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200 (789) Q Consensus 142 p~Tg~~Y~w~~~~~~~~~~~~P~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (789) |..|+.|+.|+.+.. + +-.|.+..+..+++++.+..+..++..+.. ++.|... T Consensus 162 ~~~g~~~~~~~~~~~-~---~~~i~~~~l~~~l~~l~e~~k~~~i~~~~~--~~~~~~~ 214 (335) T 3m1m_A 162 PWKEQNYTTCYTLYN-E---LKEISKVDLKSLLRFLAEKGKRLGITLSKT--AKEWLEG 214 (335) T ss_dssp TTTTSSCEEECEESS-C---CCCCCBCCHHHHHHHHHHHHGGGTEEECHH--HHHHHCC T ss_pred CCCCCCCCEEECCCC-C---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCH--HHHHHCC T ss_conf 856877720201245-5---551566587889999998745416331600--5666357 No 3 >1ro2_A Hypothetical protein ORF904; DNA polymerase, primase, replication, polymerization, evolution of nucleic acid polymerizing enzymes; 1.60A {Sulfolobus islandicus} SCOP: d.264.1.2 PDB: 1ro0_A 1rni_A Probab=99.89 E-value=2e-23 Score=171.90 Aligned_cols=179 Identities=18% Similarity=0.231 Sum_probs=116.7 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCC--CCCCCCCCCCCHHHHHHH----H-HCCEEEEECCCCCCEEEEEEECCCC Q ss_conf 67888878999977985977356778787--756545656898999742----0-0788999234779879999646881 Q gi|254781225|r 3 VMQWKEQAKQAIHNGFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKL----P-ACGFGFVCGVGEQPLYAFDIDSKDE 75 (789) Q Consensus 3 ~~~~~~~~~~~i~~G~~viPi~pg~KrP~--~~~~w~~~~~~~~~i~~~----~-~~giGi~~G~~s~glv~iDiD~~d~ 75 (789) .++| |.+|+++||+|||+.|++|+|. .|.+|+++.++.++|.+| | ++||||.||. +++|+||||.+++ T Consensus 4 ~l~~---A~~y~~~G~~V~Pl~p~~K~P~~~~W~~~~~~~~t~~ei~~w~~~~p~~~NiGI~tG~--sglvViDiD~~~~ 78 (216) T 1ro2_A 4 RIRY---AKWMLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ--KGMVIMDFESKEK 78 (216) T ss_dssp HHHH---HHHHHHTTCCCEEECTTTCSBSSTTGGGGGTSCCCHHHHHHHHHHHHHTCEEEEESSG--GGEEEEEESCHHH T ss_pred HHHH---HHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC--CCEEEEECCCCCH T ss_conf 9999---9999988997996689998578678743146899999999999859975559998178--8889997888520 Q ss_pred HHHHH-HHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCCCC--CCCCCCCCEEEECCCCEEEECCCC------CCCCC Q ss_conf 25678-9998764189976996788965999950731024454--444576753485268438804776------88887 Q gi|254781225|r 76 KTANT-FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK--TTESTQGHLDILGCGQYFVAYNIH------PKTKK 146 (789) Q Consensus 76 ~~~~~-~~~~~~~l~g~p~~~~g~~~~~~~~yr~~~~~~~~~~--~~~~~~~~iEi~~~G~q~V~~gsh------p~Tg~ 146 (789) ..... +....+.+..+..+++++. +.|++|+.+..+..+.. ......+.+||++.|+|||+|||. +.++. T Consensus 79 ~~~~~~~~~l~~~~~~T~~v~TpsG-G~HlYf~~~~~p~~~~~~~~~~~g~~~iDir~~ggYVVaPgS~i~h~~~~~~~~ 157 (216) T 1ro2_A 79 LKAWIGESALEELCRKTLCTNTVHG-GIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKC 157 (216) T ss_dssp HHHHHCHHHHHHHHHHSCEEECTTS-CEEEEEECSCCCSSCCCCSEESSSSEEEEEECTTCEEECTTCEEEGGGCCSTTC T ss_pred HHHHHHHHHHHHCCCCCEEEECCCC-EEEEEEECCCCCCCCCCCCEECCCCCEEEEEECCCEEEECCEECCCCCCCCCCC T ss_conf 6666555666620888669988998-589999778878554365332389844899716988995581035666787777 Q ss_pred CEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC Q ss_conf 457517765-58722164689999999997620012434543 Q gi|254781225|r 147 EYTWTTPPH-RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187 (789) Q Consensus 147 ~Y~w~~~~~-~~~~~~~P~i~~~~~~~l~~~~~~~~~~~~~~ 187 (789) +|+|..... .....+++.+.+..++.++.++..+.+..+.. T Consensus 158 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~ 199 (216) T 1ro2_A 158 PWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGIT 199 (216) T ss_dssp TTTTCSCEEECEESSSCCCCEECCHHHHHHHHHHHHGGGTCE T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 745787302566654334456104678899998766653763 No 4 >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Probab=99.69 E-value=3.5e-17 Score=130.35 Aligned_cols=159 Identities=12% Similarity=0.117 Sum_probs=121.7 Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 87579478999998887999999999999999975987433799997078862578999999972330003442676420 Q gi|254781225|r 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 (789) Q Consensus 461 ~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~ 540 (789) +.+.....+.+||.- ..-+.+.|+ ..+...|.|..+ +.+++++|++++|||+|...|.+.++....+.. T Consensus 22 ~~~g~w~~i~~~l~~--q~v~~~~fl-~~l~~~l~g~PK-knci~~~GPp~TGKS~fa~sL~~~l~G~vis~~------- 90 (212) T 1tue_A 22 DEGGDWRPIVQFLRY--QQIEFITFL-GALKSFLKGTPK-KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFV------- 90 (212) T ss_dssp CSCCCSHHHHHHHHH--TTCCHHHHH-HHHHHHHHTCTT-CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCC------- T ss_pred CCCCCHHHHHHHHHH--CCCCHHHHH-HHHHHHHCCCCC-CEEEEEECCCCCCHHHHHHHHHHHHCCEEEECC------- T ss_conf 788878999999987--785399999-999999708986-228999889986689999999998568046315------- Q ss_pred CCCCCCCCCCHHHHHHCCCEEEEEECCCCC--CCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCC Q ss_conf 124555568988997389809999346777--601310024541598587321047860687145289997388634267 Q gi|254781225|r 541 NRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 (789) Q Consensus 541 ~~~~~~~~~~~~la~l~g~r~~~~~E~~~~--~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~ 618 (789) + ...+|.|+.|.++++++.+|+... ..+ ...+|.++||++|.++.||+++. ++.+. .++++||+.|...+ T Consensus 91 ----N-~~S~F~Lq~l~~~ki~l~dD~t~~~~~~~-d~~lK~ll~G~~V~vd~Khk~~~-qi~~p-PliITsN~d~~~~d 162 (212) T 1tue_A 91 ----N-STSHFWLEPLTDTKVAMLDDATTTCWTYF-DTYMRNALDGNPISIDRKHKPLI-QLKCP-PILLTTNIHPAKDN 162 (212) T ss_dssp ----C-SSSCGGGGGGTTCSSEEEEEECHHHHHHH-HHHCHHHHHTCCEEEC----CCE-EECCC-CEEEEESSCTTSSS T ss_pred ----C-CCCCCCCCCCCCCEEEEEECCCCCHHHHH-HHHHHHCCCCCEEEECCCCCCCE-EECCC-CEEEEECCCCCCCC T ss_conf ----7-78886677667987999846664246778-99999703998166500259960-30279-88998188989675 Q ss_pred CCCCEEEEEEEEECCCCCCC Q ss_conf 98416646899965887888 Q gi|254781225|r 619 PDDAWWRRYIVIPFDKPIAN 638 (789) Q Consensus 619 ~d~~~~rR~~iipF~~~~~~ 638 (789) .+.+++||+++++|+++||- T Consensus 163 ~~~~L~sRi~~f~F~~~fP~ 182 (212) T 1tue_A 163 RWPYLESRITVFEFPNAFPF 182 (212) T ss_dssp SCHHHHTSCEEEECCSCCCB T ss_pred CCHHHHHEEEEEECCCCCCC T ss_conf 52426650799887994887 No 5 >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Probab=99.59 E-value=2.3e-15 Score=118.32 Aligned_cols=176 Identities=14% Similarity=0.170 Sum_probs=122.8 Q ss_pred CCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 98655010013788887579478999998887999999999999999975987433799997078862578999999972 Q gi|254781225|r 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 446 ~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) -+...+|...+..-.++ -....+.+||.- ..-+.+.++ .++-..|-|. ..+.+++++|++++|||+|...|...+ T Consensus 76 ms~s~~i~~r~~~~~~~-g~w~~Iv~fL~~--q~v~~i~fl-~~l~~~l~~~-PKknci~~~GPpnTGKS~fa~sL~~~l 150 (305) T 2v9p_A 76 LSMPAYIKARCKLATGE-GSWKSILTFFNY--QNIELITFI-NALKLWLKGI-PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305) T ss_dssp SCHHHHHHHHHHHCCSS-CCTHHHHHHHHH--TTCCHHHHH-HHHHHHHHTC-TTCSEEEEECSSSSSHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCC-CCHHHHHHHHHH--CCCCHHHHH-HHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHC T ss_conf 59999999997505788-765999999983--796599999-9999997289-874179998999878899999999980 Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCC--CCCCCCEEEEEECCCEEEEEECCCCCCEEEECC Q ss_conf 330003442676420124555568988997389809999346777--601310024541598587321047860687145 Q gi|254781225|r 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 (789) Q Consensus 526 G~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~--~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~ 603 (789) |. .+.+. .. .+.+|+|..|.++++++..|+... ..+ ...+|.++||++|.++.||+++. ++++. T Consensus 151 ~G-~vis~----~N-------~ks~F~L~~l~dkkv~l~dD~t~~~~~~~-d~~lK~~lgG~~V~id~Khk~~~-qi~~p 216 (305) T 2v9p_A 151 GG-SVLSF----AN-------HKSHFWLASLADTRAALVDDATHACWRYF-DTYLRNALDGYPVSIDRKHKAAV-QIKAP 216 (305) T ss_dssp TC-EEECG----GG-------TTSGGGGGGGTTCSCEEEEEECHHHHHHH-HHTTTGGGGTCCEECCCSSCCCC-EECCC T ss_pred CC-CEEEE----CC-------CCCCCCCCCHHCCEEEEEECCCHHHHHHH-HHHHHHHCCCCEEEEECCCCCCC-CCCCC T ss_conf 98-36850----68-------99976577321587999815660556778-99999713997477630047863-14689 Q ss_pred EEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC Q ss_conf 28999738863426798416646899965887888787 Q gi|254781225|r 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641 (789) Q Consensus 604 ~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~d~ 641 (789) -++++||+.|...+...++++|+++++|+++||+.+. T Consensus 217 -PlIITSN~di~~~d~~~yL~sR~~~f~F~~~~Pd~~g 253 (305) T 2v9p_A 217 -PLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESG 253 (305) T ss_dssp -CEEEEESSCSTTCGGGGGGTTTEEEEECCCCCCCC-- T ss_pred -CEEEECCCCCCCCCCCHHHHHEEEEEECCCCCCCCCC T ss_conf -8899648998857551446642799777998988899 No 6 >1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20 Probab=98.42 E-value=8.3e-07 Score=61.50 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=65.4 Q ss_pred HHHHHHHEEECCCCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEECC Q ss_conf 88875432626884111799999999999850466755545256899998635423331001025676520899798656 Q gi|254781225|r 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 (789) Q Consensus 694 ~~fi~e~ce~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~~Gi~Lk~ 773 (789) -+||.+.||.+++..++..+||+.|.+||+.++ .++++...|++.++.. | ++++..+...++.++..|.||+||. T Consensus 2 ~~WL~~~~e~~~~~svpr~~lY~~Y~~~C~~~~---~~~l~~a~Fgk~ir~v-F-P~v~~rRlg~rG~skyhY~Gi~lka 76 (76) T 1dp7_P 2 VQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQK---LEPVNAASFGKLIRSV-F-MGLRTRRLGTRGNSKYHYYGLRIKA 76 (76) T ss_dssp HHHHHHHEEEEEEEEEEHHHHHHHHHHHHHHTT---CCCCCHHHHHHHHHHH-S-TTCEEEEESSTTCCEEEEEEEEECC T ss_pred HHHHHHHCEECCCCEEEHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHH-C-CCCCEEECCCCCCCEEEEEEEEECC T ss_conf 557775548789965607999999999999859---9667777899999998-8-9973000698997548996069639 No 7 >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A Probab=97.43 E-value=0.0026 Score=38.31 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=76.8 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC Q ss_conf 99999888799999999999999997598743379999707886257899999997233000344267642012455556 Q gi|254781225|r 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 (789) Q Consensus 469 ~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~ 548 (789) ...||...+++-+.+. .+++-+.+.|. ..+..++++||.|.|||+|...|.+.+|.... +.+.+.. . T Consensus 140 ~v~~l~~~~~~~~~~~--~~~l~~~~~~~-~~~~~iL~~GPPGtGKT~lA~alA~~l~~~~i-~in~s~~---------~ 206 (377) T 1svm_A 140 GVAWLHCLLPKMDSVV--YDFLKCMVYNI-PKKRYWLFKGPIDSGKTTLAAALLELCGGKAL-NVNLPLD---------R 206 (377) T ss_dssp HHHHHTTTSTTHHHHH--HHHHHHHHHCC-TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEE-CCSSCTT---------T T ss_pred HHHHHHHCCCCCCHHH--HHHHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE-EEECHHH---------H T ss_conf 9999985156724899--99999998489-86445999899999889999999998599889-9977003---------1 Q ss_pred CCHHHHHHCCCEEEEEECCCCC----------CCCCC--CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCC Q ss_conf 8988997389809999346777----------60131--00245415985873210478606871452899973886342 Q gi|254781225|r 549 ANPSLIRLMGSRIVIISETNEN----------DEINA--AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 (789) Q Consensus 549 ~~~~la~l~g~r~~~~~E~~~~----------~~~~~--~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~ 616 (789) ..+.+..+.++...++.+.... -.+++ .....+-|+.......++.... ..... -++++||+.- T Consensus 207 s~f~l~~~~~~~~~~~dd~~~~~~~~~~~~~~i~iDEiD~l~~~~dg~~~~~ld~k~~~~~-~~~~~-piI~TtN~~~-- 282 (377) T 1svm_A 207 LNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKR-TQIFP-PGIVTMNEYS-- 282 (377) T ss_dssp HHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCE-EECCC-CEEEEECSCC-- T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCCCCHHCCCCHH-HCCCC-CEEEECCCCC-- T ss_conf 0888751420212036888876664157898067640864200014860001001123501-11566-6378517444-- Q ss_pred CCCCCCEEEEEEEEEC Q ss_conf 6798416646899965 Q gi|254781225|r 617 RNPDDAWWRRYIVIPF 632 (789) Q Consensus 617 ~~~d~~~~rR~~iipF 632 (789) +..-...||..++-| T Consensus 283 -~~~~~~~R~~~~~i~ 297 (377) T 1svm_A 283 -VPKTLQARFVKQIDF 297 (377) T ss_dssp -CCHHHHTTEEEEEEC T ss_pred -CCCCCCCCCEEEEEC T ss_conf -642014775122205 No 8 >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, membrane, nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Probab=97.03 E-value=0.00045 Score=43.34 Aligned_cols=153 Identities=14% Similarity=0.071 Sum_probs=77.5 Q ss_pred HHCCCHHHHHHHHHHHHHHHC------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC-- Q ss_conf 887999999999999999975------987433799997078862578999999972330003442676420124555-- Q gi|254781225|r 475 GYFESEEVMDYFTRCVGMALL------GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA-- 546 (789) Q Consensus 475 ~~~~d~e~~~~l~~~~g~~l~------g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~-- 546 (789) +|.|-++..+.+++.+-+-+. +.....+-++|+|+.|+|||++.+.+..-+|-.........+++...+... T Consensus 19 dI~G~~~~k~~l~e~i~~pl~~~~~~~~~~~~~~giLL~GPpGtGKT~la~aiA~e~~~~~~~i~~~~l~~~~~g~~e~~ 98 (322) T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKL 98 (322) T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHH T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCHHHHH T ss_conf 96399999999999999887598978369999971688797998789999999998589856756899876246299999 Q ss_pred CCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEE--CCCCCCEEEECCEEEEEECCCCCCCCCCCCCEE Q ss_conf 568988997389809999346777601310024541598587321--047860687145289997388634267984166 Q gi|254781225|r 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL--NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 (789) Q Consensus 547 ~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~--~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~ 624 (789) -..-+..|+...-.++++.|.+.--. .+-....+.+...... ..............++.+||++ ..-|.++. T Consensus 99 i~~~f~~a~~~~p~ii~iDeid~l~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivI~aTN~~---~~ld~al~ 172 (322) T 3eie_A 99 VKQLFAMARENKPSIIFIDQVDALTG---TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP---WQLDSAIR 172 (322) T ss_dssp HHHHHHHHHHTSSEEEEEECGGGGSC---C------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG---GGSCHHHH T ss_pred HHHHHHHHHHCCCCEEEECHHHHHCC---CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH---HHCCHHHH T ss_conf 99999999864996674120344305---5778888327999999999975113567874899727980---33589998 Q ss_pred EEEE-EEECC Q ss_conf 4689-99658 Q gi|254781225|r 625 RRYI-VIPFD 633 (789) Q Consensus 625 rR~~-iipF~ 633 (789) ||+- .|.|. T Consensus 173 rRfd~~i~i~ 182 (322) T 3eie_A 173 RRFERRIYIP 182 (322) T ss_dssp HHCCEEEECC T ss_pred HHHHEEEEEC T ss_conf 2503688608 No 9 >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Probab=96.90 E-value=0.00085 Score=41.51 Aligned_cols=154 Identities=15% Similarity=0.214 Sum_probs=81.7 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCH Q ss_conf 99888799999999999999997598743379999707886257899999997233000344267642012455556898 Q gi|254781225|r 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 (789) Q Consensus 472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (789) .|+++.|.+.++.-+..++-.........+ .++|+|+.|.||+|+..+|.+.++........ ..... .+.... T Consensus 23 ~l~dvvGQ~~~~~~l~~~i~~~~~~~~~~~-~lLf~GPPGtGKTTlA~iiA~~~~~~~~~~s~-~~~~~-----~~d~~~ 95 (334) T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLD-HVLLAGPPGLGKTTLAHIIASELQTNIHVTSG-PVLVK-----QGDMAA 95 (334) T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCC-CEEEESSTTSSHHHHHHHHHHHHTCCEEEEET-TTCCS-----HHHHHH T ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCC-----HHHHHH T ss_conf 788834959999999999998884388888-17988969988999999999831887445678-53212-----678999 Q ss_pred HHHHHCCCEEEEEECCCCCCCCCC-CEEEEEECC--CEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE- Q ss_conf 899738980999934677760131-002454159--8587321047860687145289997388634267984166468- Q gi|254781225|r 552 SLIRLMGSRIVIISETNENDEINA-AKIKQMTGG--DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY- 627 (789) Q Consensus 552 ~la~l~g~r~~~~~E~~~~~~~~~-~~~K~ltgg--D~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~- 627 (789) .+.......+++++|...-.+... ..+..+-.+ |.+.+..-..+.+....+.+.++.+||..+.+. .++..|+ T Consensus 96 ~~~~~~~~~ilfIDEihr~~k~~qd~ll~~~E~~~i~~l~g~~~~~~~~~~~~~~~~~i~att~~~~~~---~~l~sR~~ 172 (334) T 1in4_A 96 ILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS---SPLRSRFG 172 (334) T ss_dssp HHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSC---HHHHTTCS T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHCEEEEEEECCCCCCCCEECCCCCEEEEEECCCCCCCC---HHHHHHHE T ss_conf 988640253023445865436688751010002069988526744554004777557997426754363---77776600 Q ss_pred EEEECCCC Q ss_conf 99965887 Q gi|254781225|r 628 IVIPFDKP 635 (789) Q Consensus 628 ~iipF~~~ 635 (789) .++.|+.. T Consensus 173 ~~~~~~~~ 180 (334) T 1in4_A 173 IILELDFY 180 (334) T ss_dssp EEEECCCC T ss_pred EEEECCCC T ss_conf 26521678 No 10 >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Probab=96.80 E-value=0.00039 Score=43.74 Aligned_cols=155 Identities=13% Similarity=0.099 Sum_probs=78.6 Q ss_pred HHHCCCHHHHHHHHHHHHHHHCC------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC- Q ss_conf 88879999999999999999759------87433799997078862578999999972330003442676420124555- Q gi|254781225|r 474 SGYFESEEVMDYFTRCVGMALLG------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA- 546 (789) Q Consensus 474 ~~~~~d~e~~~~l~~~~g~~l~g------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~- 546 (789) +++.|-++..+-+.+.+-+.+.. .....+-++++|+.|+|||++.+.+..-+|-.........+.+...+... T Consensus 21 ~di~G~~~~k~~l~e~v~~~~~~~~~~~~~~~p~~giLL~GPpGtGKT~la~aiA~~~~~~~~~~~~~~l~~~~~g~~~~ 100 (297) T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEK 100 (297) T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHH T ss_pred HHHCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCHHHH T ss_conf 88638999999999999957509998934999982488889699749999999985229983225520120356777999 Q ss_pred -CCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCC-EEEEEEC--C-CCCCEEEECCEEEEEECCCCCCCCCCCC Q ss_conf -568988997389809999346777601310024541598-5873210--4-7860687145289997388634267984 Q gi|254781225|r 547 -GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLN--Y-GNTYSESPASFTPFIVPNKHLFVRNPDD 621 (789) Q Consensus 547 -~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD-~i~ar~~--~-~~~~~~~~p~~~~~~~~N~~P~~~~~d~ 621 (789) -..-++.|+.....++++.|.+.-..-.. ..-..++ .+..... . ......-.....++.+||++- .-|. T Consensus 101 ~~~~~~~~a~~~~p~il~iDeid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viviatTn~~~---~ld~ 174 (297) T 3b9p_A 101 LVRALFAVARHMQPSIIFIDEVDSLLSERS---SSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ---ELDE 174 (297) T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG---GBCH T ss_pred HHHHHHHHHHHCCCCEEEHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCH---HCCH T ss_conf 999999999973997321677777633467---8886154999999999876323577898089998379930---0278 Q ss_pred CEEEEE-EEEECCC Q ss_conf 166468-9996588 Q gi|254781225|r 622 AWWRRY-IVIPFDK 634 (789) Q Consensus 622 ~~~rR~-~iipF~~ 634 (789) |+.||+ ..|.|+. T Consensus 175 al~rRfd~~i~~~~ 188 (297) T 3b9p_A 175 AALRRFTKRVYVSL 188 (297) T ss_dssp HHHHHCCEEEECCC T ss_pred HHHCCCCEEEEECC T ss_conf 88674408987289 No 11 >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Probab=96.69 E-value=0.0033 Score=37.57 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=82.5 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCH Q ss_conf 99888799999999999999997598743379999707886257899999997233000344267642012455556898 Q gi|254781225|r 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 (789) Q Consensus 472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (789) -|+++.|.+.++.-+..++-....+....+ .++|+||.|.||+|+..+|.+.++........ ..... ...... T Consensus 27 ~l~dvVGQ~~~~~~l~~~i~~~~~~~~~~~-s~lf~GPPG~GKTTlA~iiA~~~~~~~~~~~a-~~~~~-----~~d~~~ 99 (338) T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLD-HILFSGPAGLGKTTLANIISYEMSANIKTTAA-PMIEK-----SGDLAA 99 (338) T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCC-CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG-GGCCS-----HHHHHH T ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCCC-----HHHHHH T ss_conf 889956929999978999999985388888-48988989987999999999841898555556-43331-----899999 Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCCE-EEEEECCC--EEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEE Q ss_conf 89973898099993467776013100-24541598--5873210478606871452899973886342679841664689 Q gi|254781225|r 552 SLIRLMGSRIVIISETNENDEINAAK-IKQMTGGD--CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 (789) Q Consensus 552 ~la~l~g~r~~~~~E~~~~~~~~~~~-~K~ltggD--~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~ 628 (789) .+.........+++|...-....... +..+-.+. .+.+..-....+....+.+.++++||+...+. .++..|+. T Consensus 100 ~~~~~~~~~ilfiDeih~~~~~~q~~ll~~ie~~~i~~i~~~~~~~~~~~~~~~~~~~i~a~~~~~~l~---~~l~sR~~ 176 (338) T 3pfi_A 100 ILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLS---NPLRDRFG 176 (338) T ss_dssp HHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSC---HHHHTTCS T ss_pred HHHCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEHHHHHHHHCCCCCCCCCEEEEEECCCHHHCC---HHHHHHHH T ss_conf 865134203676532320254320010034324367541010121023356875324443035365324---14431256 Q ss_pred -EEECCCC Q ss_conf -9965887 Q gi|254781225|r 629 -VIPFDKP 635 (789) Q Consensus 629 -iipF~~~ 635 (789) ++.|... T Consensus 177 ~~~~~~~~ 184 (338) T 3pfi_A 177 MQFRLEFY 184 (338) T ss_dssp EEEECCCC T ss_pred HHHHHHCC T ss_conf 76654014 No 12 >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Probab=96.58 E-value=0.0052 Score=36.28 Aligned_cols=138 Identities=16% Similarity=0.235 Sum_probs=75.1 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH-------HHHHHCCCC- Q ss_conf 988879999999999999999759874337999970788625789999999723300034426-------764201245- Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA-------SDIMQNRPP- 544 (789) Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~-------~~~~~~~~~- 544 (789) |+++.+.+++++.|+.++.. + +....++++|+-|.||+++..++...++......... ..+...... T Consensus 22 l~diig~~~~~~~L~~~i~~---~--~~~~~~L~~Gp~G~GKt~~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~d 96 (250) T 1njg_A 22 FADVVGQEHVLTALANGLSL---G--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 96 (250) T ss_dssp GGGCCSCHHHHHHHHHHHHH---T--CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSS T ss_pred HHHHCCHHHHHHHHHHHHHC---C--CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCE T ss_conf 99814939999999999986---9--976059878999987899999999984785567767666546899997489862 Q ss_pred -----CCCCCC-H---HHHH------H-CCCEEEEEECCCCCCCCCC-CEEEEEECCCEEEEEECCCCCCEEEECCEEEE Q ss_conf -----555689-8---8997------3-8980999934677760131-00245415985873210478606871452899 Q gi|254781225|r 545 -----EAGKAN-P---SLIR------L-MGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 (789) Q Consensus 545 -----~~~~~~-~---~la~------l-~g~r~~~~~E~~~~~~~~~-~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~ 607 (789) .++... . ++.. . -+.+++++.|.+.-..-.. +++|.| .+......++ T Consensus 97 ~~e~~~~~~~~i~~ir~l~~~~~~~~~~~~~kviiiDe~d~l~~~a~n~Llk~l----------------E~~~~~~~~I 160 (250) T 1njg_A 97 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL----------------EEPPEHVKFL 160 (250) T ss_dssp EEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHH----------------HSCCTTEEEE T ss_pred EEEECCHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH----------------HCCCCCCEEE T ss_conf 899610320789999999999974651589879999781539999999999998----------------6278871799 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEECCC Q ss_conf 973886342679841664689996588 Q gi|254781225|r 608 IVPNKHLFVRNPDDAWWRRYIVIPFDK 634 (789) Q Consensus 608 ~~~N~~P~~~~~d~~~~rR~~iipF~~ 634 (789) ++||+.+.+. .++-.|..+|.|.. T Consensus 161 l~t~~~~~l~---~ti~SRc~~i~~~~ 184 (250) T 1njg_A 161 LATTDPQKLP---VTILSRCLQFHLKA 184 (250) T ss_dssp EEESCGGGSC---HHHHTTSEEEECCC T ss_pred EECCCHHHHH---HHHHCCCCEEEEEC T ss_conf 9669845534---87856666323206 No 13 >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Probab=96.58 E-value=0.0018 Score=39.34 Aligned_cols=155 Identities=15% Similarity=0.062 Sum_probs=73.8 Q ss_pred HHCCCHHHHHHHHHHHHHHHC------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH-HHHHHCCC--CC Q ss_conf 887999999999999999975------9874337999970788625789999999723300034426-76420124--55 Q gi|254781225|r 475 GYFESEEVMDYFTRCVGMALL------GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA-SDIMQNRP--PE 545 (789) Q Consensus 475 ~~~~d~e~~~~l~~~~g~~l~------g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~-~~~~~~~~--~~ 545 (789) +|.|-+++.+.|++.+-+-|. +.....+-++|||+.|+|||++.+.|..-++......++. .+.....+ .. T Consensus 135 di~Gl~~~k~~l~e~v~~pl~~~~~~~~~~~p~rgiLL~GPPGtGKT~lakaiA~e~~~~~~~~v~~s~l~~~~~g~se~ 214 (444) T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEK 214 (444) T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCC T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHH T ss_conf 96599999999999999997499977489999971477798999789999999987216855987132123665156889 Q ss_pred CCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECC-CCCCEEEECCEEEEEECCCCCCCCCCCCCEE Q ss_conf 556898899738980999934677760131002454159858732104-7860687145289997388634267984166 Q gi|254781225|r 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY-GNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 (789) Q Consensus 546 ~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~-~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~ 624 (789) .-..-++.|+.....++++.|.+.-..-..+.-.. +...+....+. -+.+..-.....++.+||++ ..-|.++. T Consensus 215 ~i~~~f~~a~~~~p~ii~iDeid~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~vlvi~aTN~p---~~lD~Al~ 289 (444) T 2zan_A 215 LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE--AARRIKTEFLVQMQGVGVDNDGILVLGATNIP---WVLDSAIR 289 (444) T ss_dssp THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCG--GGHHHHHHHHTTTTCSSCCCSSCEEEEEESCG---GGSCHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC---CCCCHHHH T ss_conf 99999999997088531025555530366665430--47889999999986034678987898506997---66879898 Q ss_pred EEEE-EEECCC Q ss_conf 4689-996588 Q gi|254781225|r 625 RRYI-VIPFDK 634 (789) Q Consensus 625 rR~~-iipF~~ 634 (789) ||+- .|.|+. T Consensus 290 rRfd~~I~i~~ 300 (444) T 2zan_A 290 RRFEKRIYIPL 300 (444) T ss_dssp TTCCEEEECCC T ss_pred HHCCEEEEECC T ss_conf 13617988589 No 14 >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, acetylation, ATP-binding, cytoplasm, lipid-binding, nucleotide-binding; HET: ADP; 3.00A {Mus musculus} Probab=96.38 E-value=0.017 Score=32.90 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=54.4 Q ss_pred HHCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC- Q ss_conf 8879999999999999999759-------87433799997078862578999999972330003442676420124555- Q gi|254781225|r 475 GYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA- 546 (789) Q Consensus 475 ~~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~- 546 (789) +|.|-++..+.+++.+-+.|.. +....+-++++|+.|+|||++.+.+...+|-.........+.+...+... T Consensus 16 di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~gvLl~GppGtGKT~la~aia~~~~~~~~~i~~s~l~~~~~~~~~~ 95 (301) T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA 95 (301) T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTT T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCHHH T ss_conf 94786999999999999987499999867999886378879999988999999999949976998879951344650689 Q ss_pred -CCCCHHHHHHCCCEEEEEECCCC Q ss_conf -56898899738980999934677 Q gi|254781225|r 547 -GKANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 547 -~~~~~~la~l~g~r~~~~~E~~~ 569 (789) -..-++.|....-.++++.|.+. T Consensus 96 ~~~~~f~~a~~~~p~il~iDeid~ 119 (301) T 3cf0_A 96 NVREIFDKARQAAPCVLFFDELDS 119 (301) T ss_dssp HHHHHHHHHHHTCSEEEEECSTTH T ss_pred HHHHHHHHHHHCCCCEEEEECCCC T ss_conf 999999999973994797403554 No 15 >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Probab=96.22 E-value=0.0025 Score=38.36 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=78.6 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHH Q ss_conf 98887999999999999999975987433799997078862578999999972330003442676420124555568988 Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 (789) Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (789) |+++.|.+++.+.+..++-....+....+ -++++|+.|.||+|+..++.+.+|-............. +..... T Consensus 11 l~divGq~~~~~~l~~~l~~~~~~~~~~~-~iLl~GPpG~GKTtlA~~iA~~l~~~~~~~~~~~~~~~------~~~~~~ 83 (324) T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLE-HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP------GDLAAI 83 (324) T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCC-CCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH------HHHHHH T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC------HHHHHH T ss_conf 88837989999999999998873489998-59998979951999999999986889644568632411------068888 Q ss_pred HHHH-CCCEEEEEECCCCCCCCCCCEEEEEE---CCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE- Q ss_conf 9973-89809999346777601310024541---598587321047860687145289997388634267984166468- Q gi|254781225|r 553 LIRL-MGSRIVIISETNENDEINAAKIKQMT---GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY- 627 (789) Q Consensus 553 la~l-~g~r~~~~~E~~~~~~~~~~~~K~lt---ggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~- 627 (789) +... ..+..+...+...........+.... --|.+..............+.+.++++||+...+ +.++.||. T Consensus 84 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l---~~~l~~~~~ 160 (324) T 1hqc_A 84 LANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI---TAPLLSRFG 160 (324) T ss_dssp HTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSC---SCSTTTTCS T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCHHHC---CHHHHCCHH T ss_conf 87765215432215776643665530321000010047852686776445588750577631875542---244311122 Q ss_pred EEEECCCCC Q ss_conf 999658878 Q gi|254781225|r 628 IVIPFDKPI 636 (789) Q Consensus 628 ~iipF~~~~ 636 (789) ..+.|.... T Consensus 161 ~~~~~~~~~ 169 (324) T 1hqc_A 161 IVEHLEYYT 169 (324) T ss_dssp CEEECCCCC T ss_pred HHHHHCCCC T ss_conf 444415789 No 16 >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Probab=96.18 E-value=0.0022 Score=38.71 Aligned_cols=255 Identities=13% Similarity=0.086 Sum_probs=116.9 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC---CCC------CHH-HHHH---CCC- Q ss_conf 99999999999999997598743379999707886257899999997233000---344------267-6420---124- Q gi|254781225|r 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV---INA------EAS-DIMQ---NRP- 543 (789) Q Consensus 478 ~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~---~~~------~~~-~~~~---~~~- 543 (789) +-++-++.+..++.-.+.........++++|+.|.||+++.+.+..-+.+... ... +.. .+.. ..+ T Consensus 21 ~Re~e~~~l~~~l~~~~~~~~~~~~~~li~GppGtGKT~~ar~la~~l~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~ 100 (389) T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNI 100 (389) T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTC T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHCCCHHHHHHHHHHHHCC T ss_conf 76999999999999998667988881799889999699999999998531258976985531116589999888887233 Q ss_pred --CCCCCCCH--------HHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCC Q ss_conf --55556898--------89973898099993467776013100245415985873210478606871452899973886 Q gi|254781225|r 544 --PEAGKANP--------SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 (789) Q Consensus 544 --~~~~~~~~--------~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~ 613 (789) ...+.... .+....+..+.+..|.+.-.......+-.+ . ............++..+|.. T Consensus 101 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lde~~~l~~~~~~~~~~~----------~-~~~~~~~~~~~~~I~~~~~~ 169 (389) T 1fnn_A 101 PFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRL----------G-QEADKLGAFRIALVIVGHND 169 (389) T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHH----------T-TCHHHHSSCCEEEEEEESST T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH----------H-HHHHHCCCCCEEEEEECCCC T ss_conf 323246516689999999986416654331058877668888889999----------9-87652157717999926764 Q ss_pred CCCCCCCCCEEEEE--EEEECCCCCCCC--------------CCCHHHHH----C---C-----CCHHHHHHHHHHHHH- Q ss_conf 34267984166468--999658878887--------------87833422----0---1-----204479999999999- Q gi|254781225|r 614 LFVRNPDDAWWRRY--IVIPFDKPIANR--------------DASFAQKL----E---T-----KYTLEAKKWFLKGVK- 664 (789) Q Consensus 614 P~~~~~d~~~~rR~--~iipF~~~~~~~--------------d~~~~~~~----~---~-----~e~~~i~~w~l~g~~- 664 (789) ......+..+.+|+ ..+.|...-.++ ...+.+.. . . ....|-..+++.-+. T Consensus 170 ~~~~~~~~~~~~~~~~~~i~~~p~~~~~l~~Il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~Gd~R~ai~ll~~ 249 (389) T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 249 (389) T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH T ss_pred CHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 22220252233025774002799999999999999998734456778889999999989875002358999999999999 Q ss_pred ---HHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH--------------HHEEECCCCEECHHHHHHHHHHHHHHCCC Q ss_conf ---9998788988788999999999984263888875--------------43262688411179999999999985046 Q gi|254781225|r 665 ---AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------------DCCDIGENLWEESHSLAKSYSEYREQELN 727 (789) Q Consensus 665 ---~~~~~g~~~~~p~~v~~a~~~y~~~~D~v~~fi~--------------e~ce~~~~~~~~~~~l~~~y~~~~~~~~~ 727 (789) .....+.....++.|..+.++... +.+...+. .+........+...++|+.|...|+..+ T Consensus 250 a~~~a~~~~~~~i~~~~v~~a~~~~~~--~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~y~~l~~~~~- 326 (389) T 1fnn_A 250 SAYAAQQNGRKHIAPEDVRKSSKEVLF--GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYG- 326 (389) T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHSC--CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTT- T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHC--CCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCC- T ss_conf 999998618787899999999999975--61789986399989999999999987378875109999999999999819- Q ss_pred CCCCCCCHHHHHHHHHH---CCCC Q ss_conf 67555452568999986---3542 Q gi|254781225|r 728 YDRKRISTRTVTLNLKQ---KGFI 748 (789) Q Consensus 728 ~~~~~~s~~~~~~~l~~---~g~~ 748 (789) ..+.+.+.|...|.+ .|+. T Consensus 327 --~~~~~~~~~~~~l~~L~~~gli 348 (389) T 1fnn_A 327 --ERPRVHSQLWSYLNDLREKGIV 348 (389) T ss_dssp --CCCCCHHHHHHHHHHHHHTTSS T ss_pred --CCCCCHHHHHHHHHHHHHCCCC T ss_conf --9987699999999999977981 No 17 >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, alternative splicing, ATP-binding, hydrolase, magnesium; HET: ADP; 2.00A {Homo sapiens} Probab=96.16 E-value=0.00092 Score=41.28 Aligned_cols=151 Identities=15% Similarity=0.080 Sum_probs=71.8 Q ss_pred HCCCHHHHHHHHHHHHHHHCCC------CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC--CC Q ss_conf 8799999999999999997598------743379999707886257899999997233000344267642012455--55 Q gi|254781225|r 476 YFESEEVMDYFTRCVGMALLGG------NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE--AG 547 (789) Q Consensus 476 ~~~d~e~~~~l~~~~g~~l~g~------~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~--~~ 547 (789) |-|-++..+.|++.+-+-|... ....+=++|+|+-|+||+++.+.|..-+|-.........+.+...+.. .- T Consensus 86 I~Gl~~~k~~l~e~v~~pl~~p~~f~~~~~pp~GvLL~GPPGtGKT~lakaiA~e~g~~~~~i~~~~l~s~~~g~~e~~i 165 (357) T 3d8b_A 86 IAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMV 165 (357) T ss_dssp SCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHH T ss_pred HHCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCHHHHH T ss_conf 70899999999999999974999897469998458877979987999999998422898599406774023466069999 Q ss_pred CCCHHHHHHCCCEEEEEECCCCCCCCCC----CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCE Q ss_conf 6898899738980999934677760131----002454159858732104786068714528999738863426798416 Q gi|254781225|r 548 KANPSLIRLMGSRIVIISETNENDEINA----AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 (789) Q Consensus 548 ~~~~~la~l~g~r~~~~~E~~~~~~~~~----~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~ 623 (789) ..-+..|+....-++++.|.+.-..-.. .....+.. .+... +-... ..-.....++.+||++ ..-|.|+ T Consensus 166 r~lf~~a~~~~p~IifiDeid~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~-~~~~~~VivI~tTN~~---~~LD~Al 238 (357) T 3d8b_A 166 RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKT--EFLVQ-LDGAT-TSSEDRILVVGATNRP---QEIDEAA 238 (357) T ss_dssp HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHH--HHHHH-HHC-----CCCCEEEEEEESCG---GGBCHHH T ss_pred HHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCCCHHHHHH--HHHHH-HHHCC-CCCCCCEEEEEECCCC---CCCCHHH T ss_conf 9999998743982553112333202356546642266777--89999-86502-5789848998708996---6578877 Q ss_pred EEEE-EEEECC Q ss_conf 6468-999658 Q gi|254781225|r 624 WRRY-IVIPFD 633 (789) Q Consensus 624 ~rR~-~iipF~ 633 (789) .||+ ..|.|. T Consensus 239 ~Rrfd~~I~i~ 249 (357) T 3d8b_A 239 RRRLVKRLYIP 249 (357) T ss_dssp HTTCCEEEECC T ss_pred HCCCCCEEEEC T ss_conf 19763289956 No 18 >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Probab=95.95 E-value=0.021 Score=32.23 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=44.1 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 79999999999999999759874--33799997078862578999999972330003 Q gi|254781225|r 477 FESEEVMDYFTRCVGMALLGGNK--AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 (789) Q Consensus 477 ~~d~e~~~~l~~~~g~~l~g~~~--~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~ 531 (789) ++|+++.+.+.+.+-.+..|... ..+.++++|+.|+||||+...|..-++...+. T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ill~GpPGsGKTtlak~la~~~~~~~~~ 62 (253) T 2p5t_B 6 YTDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVI 62 (253) T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEE T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE T ss_conf 489999999999999998263256798799988999988899999999984897399 No 19 >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, endosome, nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Probab=95.90 E-value=0.0035 Score=37.44 Aligned_cols=131 Identities=15% Similarity=0.075 Sum_probs=65.2 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC--CCCCHHHHHHCCCEEEEEECCCCCCCCCC Q ss_conf 7433799997078862578999999972330003442676420124555--56898899738980999934677760131 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA--GKANPSLIRLMGSRIVIISETNENDEINA 575 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~--~~~~~~la~l~g~r~~~~~E~~~~~~~~~ 575 (789) ....+-++|+|+-|+|||++.+.|..-+|-.........+++..-+... -..-+..++...-.++++.|.+.--. T Consensus 81 ~~p~~giLL~GPpGtGKT~la~aiA~e~~~~~~~v~~~~l~s~~~g~~e~~l~~~f~~a~~~~p~il~iDeid~l~~--- 157 (355) T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG--- 157 (355) T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--- T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEECCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH--- T ss_conf 99996268879999988999999998608996130088861455538999999999999854990686310355553--- Q ss_pred CEEEEEECCCEEEEE-EC-CCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEE-EEECCC Q ss_conf 002454159858732-10-478606871452899973886342679841664689-996588 Q gi|254781225|r 576 AKIKQMTGGDCMTAR-LN-YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI-VIPFDK 634 (789) Q Consensus 576 ~~~K~ltggD~i~ar-~~-~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~-iipF~~ 634 (789) .......+.+..... .+ .-+..........++.+||++- .-|.++.||+- .|.|.. T Consensus 158 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivI~tTN~p~---~ld~al~rRfd~~i~i~~ 216 (355) T 2qp9_X 158 TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW---QLDSAIRRRFERRIYIPL 216 (355) T ss_dssp ------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG---GSCHHHHHTCCEEEECCC T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH---HCCHHHHCHHHEEEEECC T ss_conf 15777753169999999999862434578648996079803---258988572132876279 No 20 >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 Probab=95.63 E-value=0.039 Score=30.47 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=41.9 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 79999999999999999759874--337999970788625789999999723300 Q gi|254781225|r 477 FESEEVMDYFTRCVGMALLGGNK--AQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 477 ~~d~e~~~~l~~~~g~~l~g~~~--~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) |.|+++.+.+.+.+-..+.+... ..+.++++|+.|+|||++...+..-+|... T Consensus 7 ~~~~~~~~~l~~~l~~~~~~~~~~~~P~~ill~GppGsGKT~la~~la~~~~~~~ 61 (287) T 1gvn_B 7 FTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNV 61 (287) T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCC T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCE T ss_conf 7899999999999999864876789998999889897658999999999809990 No 21 >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Probab=95.54 E-value=0.025 Score=31.70 Aligned_cols=152 Identities=19% Similarity=0.188 Sum_probs=72.7 Q ss_pred HCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC-- Q ss_conf 879999999999999999759-------87433799997078862578999999972330003442676420124555-- Q gi|254781225|r 476 YFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA-- 546 (789) Q Consensus 476 ~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~-- 546 (789) |-|-++..+.+++.+.+.+.. +....+-++++|+.|+|||++...+..-+|-.........+.....+... T Consensus 19 i~G~~~~k~~l~e~i~~~l~~~~~~~~~g~~~p~giLL~GppGtGKT~la~~iA~~~~~~~~~i~~s~l~~~~~g~~~~~ 98 (285) T 3h4m_A 19 IGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASL 98 (285) T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHH T ss_pred HCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCHHHHH T ss_conf 42699999999999999850999998679998865788798999877999999998099868988899877501057999 Q ss_pred CCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEE----ECC-CCCCEEEECCEEEEEECCCCCCCCCCCC Q ss_conf 56898899738980999934677760131002454159858732----104-7860687145289997388634267984 Q gi|254781225|r 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNY-GNTYSESPASFTPFIVPNKHLFVRNPDD 621 (789) Q Consensus 547 ~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar----~~~-~~~~~~~~p~~~~~~~~N~~P~~~~~d~ 621 (789) -..-++.|+....-+++++|.+.-.. ..--...++|.-..+ .+. -+.+ .-.....++.+||+ | ..-|. T Consensus 99 l~~~f~~a~~~~P~Il~iDeid~l~~---~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~~~v~vIatTn~-~--~~id~ 171 (285) T 3h4m_A 99 VKDIFKLAKEKAPSIIFIDEIDAIAA---KRTDALTGGDREVQRTLMQLLAEMDGF-DARGDVKIIGATNR-P--DILDP 171 (285) T ss_dssp HHHHHHHHHHTCSEEEEEETTHHHHB---CCSSSCCGGGGHHHHHHHHHHHHHHTT-CSSSSEEEEEECSC-G--GGBCH T ss_pred HHHHHHHHHHCCCCEEEEHHHHHHHC---CCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCCEEEEECCCC-C--CCCCH T ss_conf 99999999970990898541000214---578999988778999999999975176-78899899980799-4--10698 Q ss_pred CEEE--EEE-EEECCC Q ss_conf 1664--689-996588 Q gi|254781225|r 622 AWWR--RYI-VIPFDK 634 (789) Q Consensus 622 ~~~r--R~~-iipF~~ 634 (789) ++.| |+- .|.|.. T Consensus 172 al~R~gRfd~~i~i~~ 187 (285) T 3h4m_A 172 AILRPGRFDRIIEVPA 187 (285) T ss_dssp HHHSTTSEEEEEECCC T ss_pred HHCCCCCCCCEEEECC T ss_conf 6748875661214569 No 22 >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Probab=95.39 E-value=0.0023 Score=38.63 Aligned_cols=133 Identities=11% Similarity=0.085 Sum_probs=70.7 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHH Q ss_conf 98887999999999999999975987433799997078862578999999972330003442676420124555568988 Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 (789) Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (789) ++++.|.+++++.|+.++- .+.. . .++++|+.|.||+|+..++..-++...... +...+.. +.....+ T Consensus 16 ~~diig~~~~~~~l~~~i~---~~~~-~--~~Ll~Gp~G~GKTtla~~iak~l~~~~~~~-~~~~~n~-----~~~~~~~ 83 (226) T 2chg_A 16 LDEVVGQDEVIQRLKGYVE---RKNI-P--HLLFSGPPGTGKTATAIALARDLFGENWRD-NFIEMNA-----SDERGID 83 (226) T ss_dssp GGGCCSCHHHHHHHHHHHH---TTCC-C--CEEEECSTTSSHHHHHHHHHHHHHGGGGGG-GEEEEET-----TCTTCHH T ss_pred HHHHCCHHHHHHHHHHHHH---CCCC-C--EEEEECCCCCCHHHHHHHHHHHHHCCCCCC-CCCEEEC-----CCCCCHH T ss_conf 9992098999999999997---6999-8--598889999988999999999984355567-7132346-----7767699 Q ss_pred HH-------------HHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCC Q ss_conf 99-------------73898099993467776013100245415985873210478606871452899973886342679 Q gi|254781225|r 553 LI-------------RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619 (789) Q Consensus 553 la-------------~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~ 619 (789) .. .-...+++++.|.+.-..-....|..+. .+..+...+++.+|+.- .- T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~iiide~~~l~~~~q~~ll~~l---------------e~~~~~~~~i~~~~~~~---~l 145 (226) T 2chg_A 84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTM---------------EMYSKSCRFILSCNYVS---RI 145 (226) T ss_dssp HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHH---------------HHTTTTEEEEEEESCGG---GS T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHH---------------HHCCCCCEEEECCCCHH---HC T ss_conf 9999999998601126986699995112016899999988876---------------42776544773679856---58 Q ss_pred CCCEEEEEEEEECCCC Q ss_conf 8416646899965887 Q gi|254781225|r 620 DDAWWRRYIVIPFDKP 635 (789) Q Consensus 620 d~~~~rR~~iipF~~~ 635 (789) ..++..|..+++|... T Consensus 146 ~~~i~sr~~~i~~~~~ 161 (226) T 2chg_A 146 IEPIQSRCAVFRFKPV 161 (226) T ss_dssp CHHHHTTSEEEECCCC T ss_pred CHHHHCHHHHHHHCCC T ss_conf 1778653566543012 No 23 >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Probab=95.36 E-value=0.031 Score=31.15 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=38.9 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHC---------C--CCCCCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 98887999999999999999975---------9--8743379999707886257899999997233 Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALL---------G--GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~---------g--~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ++++.|+++.++-|+.|+..-.. + .......++++|+.|.||+|+..+|.+-+|- T Consensus 38 l~dliGn~~~i~~L~~wL~~w~~~~~~~~~~~~~~~~~~~~~lLL~GPpG~GKTTla~~lAkelg~ 103 (516) T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516) T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCC T ss_conf 999539799999999999850320222221001245888877999899970399999999998199 No 24 >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Probab=95.26 E-value=0.039 Score=30.47 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=52.7 Q ss_pred HHCCCHHHHHHHHHHHHHHHCCC------CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHC-CCCCCC Q ss_conf 88799999999999999997598------74337999970788625789999999723300034426764201-245555 Q gi|254781225|r 475 GYFESEEVMDYFTRCVGMALLGG------NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN-RPPEAG 547 (789) Q Consensus 475 ~~~~d~e~~~~l~~~~g~~l~g~------~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~-~~~~~~ 547 (789) ++.|-++..+-+++++.+...+. ....+-++++|+.|+|||++...|..-+|-.... ++...+... .+.... T Consensus 7 di~G~~~~k~~l~~~v~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~la~aia~~~~~~~~~-v~~~~l~~~~~g~~~~ 85 (262) T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLA-MAGAEFVEVIGGLGAA 85 (262) T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE-EETTTTSSSSTTHHHH T ss_pred HHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEE-EEHHHHCCCCCCHHHH T ss_conf 972799999999999999869999997599999726886899898647999997335986699-8879952676770199 Q ss_pred --CCCHHHHHHCCCEEEEEECCCC Q ss_conf --6898899738980999934677 Q gi|254781225|r 548 --KANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 548 --~~~~~la~l~g~r~~~~~E~~~ 569 (789) ..-++.|+...--++++.|.+. T Consensus 86 ~l~~~F~~A~~~~p~Il~iDeid~ 109 (262) T 2qz4_A 86 RVRSLFKEARARAPCIVYIDEIDA 109 (262) T ss_dssp HHHHHHHHHHHTCSEEEEEECC-- T ss_pred HHHHHHHHHHHCCCEEEEECCCHH T ss_conf 999999999970998998434302 No 25 >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Probab=95.21 E-value=0.018 Score=32.69 Aligned_cols=95 Identities=14% Similarity=0.068 Sum_probs=51.7 Q ss_pred HHCCCHHHHHHHHHHHHHHHCCC------CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC Q ss_conf 88799999999999999997598------743379999707886257899999997233000344267642012455556 Q gi|254781225|r 475 GYFESEEVMDYFTRCVGMALLGG------NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 (789) Q Consensus 475 ~~~~d~e~~~~l~~~~g~~l~g~------~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~ 548 (789) ++.|-+++.+.+.+++.+...+. .+..+-++++|+.|.|||++...|..-+|-.........+.+.-.+.+... T Consensus 13 Di~G~~~~k~~l~e~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~aia~e~~~~~~~v~~~~l~~~~~g~~~~~ 92 (257) T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASR 92 (257) T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHH T ss_pred HHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCHHHHH T ss_conf 95456999999999999987999999759999974675689998877999999987199769998578306124276999 Q ss_pred --CCHHHHHHCCCEEEEEECCCC Q ss_conf --898899738980999934677 Q gi|254781225|r 549 --ANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 549 --~~~~la~l~g~r~~~~~E~~~ 569 (789) .-+..|....--++++.|.+. T Consensus 93 l~~~f~~a~~~~P~Il~iDeid~ 115 (257) T 1lv7_A 93 VRDMFEQAKKAAPCIIFIDEIDA 115 (257) T ss_dssp HHHHHHHHHTTCSEEEEETTHHH T ss_pred HHHHHHHHHHCCCEEEEEECHHH T ss_conf 99999999975998999977566 No 26 >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Probab=95.17 E-value=0.013 Score=33.71 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=32.1 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 98887999999999999999975987433799997078862578999999972 Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ++++.+.+++++.++.++. .+.. .+ .++++|+.|.||+|+...+.+-+ T Consensus 13 ~~diig~~~~~~~L~~~i~---~~~~-~~-~lLl~Gp~G~GKTt~a~~la~~l 60 (354) T 1sxj_E 13 LNALSHNEELTNFLKSLSD---QPRD-LP-HLLLYGPNGTGKKTRCMALLESI 60 (354) T ss_dssp GGGCCSCHHHHHHHHTTTT---CTTC-CC-CEEEECSTTSSHHHHHHTHHHHH T ss_pred HHHCCCCHHHHHHHHHHHH---CCCC-CC-EEEEECCCCCCHHHHHHHHHHHH T ss_conf 9982594999999999997---7998-77-59888979998999999999986 No 27 >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Probab=94.81 E-value=0.086 Score=28.19 Aligned_cols=96 Identities=23% Similarity=0.221 Sum_probs=55.3 Q ss_pred HHHCCCHHHHHHHHHHHHHHHC------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC Q ss_conf 8887999999999999999975------9874337999970788625789999999723300034426764201245555 Q gi|254781225|r 474 SGYFESEEVMDYFTRCVGMALL------GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 (789) Q Consensus 474 ~~~~~d~e~~~~l~~~~g~~l~------g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~ 547 (789) ++|.|-++..+-+.+.+-+.|. +.....+-++++|+-|.|||++.+.+..-++......++...+.......+. T Consensus 12 ~dI~Gl~~~k~~l~e~i~~pl~~~~~~~~~~~p~~gvLL~GPpGtGKT~la~aiA~e~~~~~~~~v~~~~l~s~~~g~~~ 91 (322) T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE 91 (322) T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCH T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHH T ss_conf 99457599999999999999739998727999998168889899988999999999705795799777997572330999 Q ss_pred ---CCCHHHHHHCCCEEEEEECCCC Q ss_conf ---6898899738980999934677 Q gi|254781225|r 548 ---KANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 548 ---~~~~~la~l~g~r~~~~~E~~~ 569 (789) ..-++.|+.....++++.|.+. T Consensus 92 ~~i~~~f~~a~~~~p~ii~ideid~ 116 (322) T 1xwi_A 92 KLVKNLFQLARENKPSIIFIDEIDS 116 (322) T ss_dssp HHHHHHHHHHHHTSSEEEEEETTTG T ss_pred HHHHHHHHHHHHCCCCEEEECCHHH T ss_conf 9999999999863996687420355 No 28 >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Probab=94.73 E-value=0.021 Score=32.24 Aligned_cols=161 Identities=11% Similarity=0.104 Sum_probs=78.3 Q ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHH--HHCCCC---C---CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHH Q ss_conf 789999988-87999999999999999--975987---4---33799997078862578999999972330003442676 Q gi|254781225|r 467 QEFLDLVSG-YFESEEVMDYFTRCVGM--ALLGGN---K---AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 (789) Q Consensus 467 p~~~~~l~~-~~~d~e~~~~l~~~~g~--~l~g~~---~---~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~ 537 (789) ..+.+.|++ ++|-++.++-+...+-. ...+.. + ..+=++|+||.|.||+.+.+.|...++..... .+... T Consensus 7 ~ei~~~L~~~ViGQd~A~~~l~~~v~~~~~r~~~~~~~~~~~~p~giLl~GPpG~GKT~lAkalA~~l~~~~~~-~~~s~ 85 (310) T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATK 85 (310) T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE-EEGGG T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHH-CCCCC T ss_conf 99999865602495999999999999899873457877677898669998999988889999998874321220-35532 Q ss_pred HHH-CC-CCCCCCCC--------HHHHHHCCCEEEEEECCCCCCCCC---------CCE---EEEEECCCEEEEEECCCC Q ss_conf 420-12-45555689--------889973898099993467776013---------100---245415985873210478 Q gi|254781225|r 538 IMQ-NR-PPEAGKAN--------PSLIRLMGSRIVIISETNENDEIN---------AAK---IKQMTGGDCMTARLNYGN 595 (789) Q Consensus 538 ~~~-~~-~~~~~~~~--------~~la~l~g~r~~~~~E~~~~~~~~---------~~~---~K~ltggD~i~ar~~~~~ 595 (789) +.. .. ...++.+- ..+++..-..+++++|.++-..-. ++. +-.++-|..+ ..++ T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Iif~DEIdk~~~~~~~~~~~~~~~~v~~~LL~~~dg~~~--~~~~-- 161 (310) T 1ofh_A 86 FTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV--STKH-- 161 (310) T ss_dssp GSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE--EETT-- T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEE--ECCC-- T ss_conf 110001212555202111233126543245774588605855374557886232455799874288609988--5588-- Q ss_pred CCEEEECCEEEEEECCCCC--CCCCCCCCEEEEE-EEEECCC Q ss_conf 6068714528999738863--4267984166468-9996588 Q gi|254781225|r 596 TYSESPASFTPFIVPNKHL--FVRNPDDAWWRRY-IVIPFDK 634 (789) Q Consensus 596 ~~~~~~p~~~~~~~~N~~P--~~~~~d~~~~rR~-~iipF~~ 634 (789) . ....+..++++++..- .-.+.+.++.+|+ .+|.|+. T Consensus 162 ~--~i~~sni~fi~~~a~~~~~~~~~~Pel~~R~d~ii~~~~ 201 (310) T 1ofh_A 162 G--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 201 (310) T ss_dssp E--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCC T ss_pred E--EEECCCEEEECCCCHHHCCCCCCCHHHHCCCEEEEECCC T ss_conf 0--897573168715622104823388567477748997478 No 29 >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell cycle, hydrolase, membrane metal-binding, metalloprotease; 3.30A {Helicobacter pylori} PDB: 2r65_A* Probab=94.49 E-value=0.038 Score=30.54 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=43.5 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC--CCCCHHHHHHCCCEEEEEECCCC Q ss_conf 33799997078862578999999972330003442676420124555--56898899738980999934677 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA--GKANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~--~~~~~~la~l~g~r~~~~~E~~~ 569 (789) ...-++++|+.|.|||++...|..-+|-..+......+.+.-.+.+. =..-+..|+....-++++.|.+. T Consensus 43 ~~~gvLl~GppGtGKT~la~aia~e~~~~~~~i~~s~l~~~~~g~~~~~l~~~f~~A~~~~p~il~iDeid~ 114 (268) T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDA 114 (268) T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGG T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECHHH T ss_conf 987468768999980079999999749987998858941604536499999999999972991899871776 No 30 >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Probab=94.37 E-value=0.043 Score=30.18 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=28.0 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 8743379999707886257899999997233000 Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) .++.+.++++.|+.|+||||+.+.|...+|-... T Consensus 4 ~~~~~~i~~l~G~~GsGKST~a~~La~~l~~~~~ 37 (175) T 1knq_A 4 TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175) T ss_dssp CCTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEE T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC T ss_conf 8999818999879999989999999999698834 No 31 >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Probab=94.35 E-value=0.046 Score=29.98 Aligned_cols=139 Identities=12% Similarity=0.122 Sum_probs=72.7 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHH-HHCCCCCCCCCC- Q ss_conf 988879999999999999999759874337999970788625789999999723300034426764-201245555689- Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI-MQNRPPEAGKAN- 550 (789) Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~-~~~~~~~~~~~~- 550 (789) ++++.|.++++..|+.++- .+... + ++++|+.|.||+|+...+.+.++...........- ...++-...... T Consensus 24 ~~divg~~~~~~~l~~~i~---~~~~~-~--lLl~GppG~GKTtla~~la~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 97 (340) T 1sxj_C 24 LDEVYGQNEVITTVRKFVD---EGKLP-H--LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQI 97 (340) T ss_dssp GGGCCSCHHHHHHHHHHHH---TTCCC-C--EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHH T ss_pred HHHHCCCHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHH T ss_conf 9990594999999999997---79998-6--9888959999999999999986246677634662343347725898888 Q ss_pred HHHHH-----HCCCEEEEEECCCCCCCCCCC-EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEE Q ss_conf 88997-----389809999346777601310-024541598587321047860687145289997388634267984166 Q gi|254781225|r 551 PSLIR-----LMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 (789) Q Consensus 551 ~~la~-----l~g~r~~~~~E~~~~~~~~~~-~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~ 624 (789) ...+. -.+.+++++.|.+.-..-... .+|.|. ++.....++++||+.-.+ ..++. T Consensus 98 ~~~~~~~~~~~~~~kviiiDe~d~l~~~~qn~Ll~~le----------------~~~~~~~~il~~n~~~~i---~~~l~ 158 (340) T 1sxj_C 98 KDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIE----------------RYTKNTRFCVLANYAHKL---TPALL 158 (340) T ss_dssp HHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHH----------------HTTTTEEEEEEESCGGGS---CHHHH T ss_pred HHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHH----------------HCCCCEEEEECCCCHHHH---HHHHH T ss_conf 88777665145774899995532413777999999998----------------557652664314706552---68775 Q ss_pred EEEEEEECCCCC Q ss_conf 468999658878 Q gi|254781225|r 625 RRYIVIPFDKPI 636 (789) Q Consensus 625 rR~~iipF~~~~ 636 (789) +|..++.|...- T Consensus 159 sr~~~~~~~~~~ 170 (340) T 1sxj_C 159 SQCTRFRFQPLP 170 (340) T ss_dssp TTSEEEECCCCC T ss_pred HHHHHHHCCCCC T ss_conf 345510137898 No 32 >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Probab=94.29 E-value=0.1 Score=27.64 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=58.8 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH Q ss_conf 37888875794789999988879999999999999999759874337999970788625789999999723300034426 Q gi|254781225|r 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 (789) Q Consensus 456 ~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~ 535 (789) ..+.|+.-.-.....+-|.+ ++.+++.---|.-.| ....+-++++|+.|+|||++.+.|..-+|-........ T Consensus 35 P~v~~~Di~G~~~~k~~l~e------~i~~l~~~~~~~~~g-~~~~rgiLL~GPpGtGKT~la~aiA~e~~~~~~~i~~s 107 (278) T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE------IVEFLKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 107 (278) T ss_dssp CCCCGGGSSSCHHHHHHHHH------HHHHHHCHHHHHHTT-CCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH T ss_pred CCCCHHHHCCHHHHHHHHHH------HHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEHH T ss_conf 89989997169999999999------999855999998679-99888468768744586489999999749976998869 Q ss_pred HHHHHCCCCCC--CCCCHHHHHHCCCEEEEEECCCC Q ss_conf 76420124555--56898899738980999934677 Q gi|254781225|r 536 SDIMQNRPPEA--GKANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 536 ~~~~~~~~~~~--~~~~~~la~l~g~r~~~~~E~~~ 569 (789) .+++.--+.+. =..-++.|+...--++++.|.+. T Consensus 108 ~l~s~~~gese~~l~~~F~~A~~~~P~Il~iDEiD~ 143 (278) T 1iy2_A 108 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 143 (278) T ss_dssp HHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHH T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHH T ss_conf 964334308999999999999976997999977166 No 33 >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Probab=94.11 E-value=0.041 Score=30.31 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=32.3 Q ss_pred HHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 999759874337999970788625789999999723300034 Q gi|254781225|r 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 (789) Q Consensus 491 g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~ 532 (789) ...|++......++.+.|+-|+||||+.+.|...||...+.. T Consensus 11 ~~~~~~~~~k~~iI~I~G~~GSGKTTla~~L~~~l~~~~vi~ 52 (207) T 2qt1_A 11 SSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207) T ss_dssp ---CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE T ss_pred CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE T ss_conf 233646899839999989898859999999999859984998 No 34 >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Probab=93.99 E-value=0.14 Score=26.78 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 9999999999999759874337999970788625789999999723300 Q gi|254781225|r 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 481 e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) +.++++.+-+ +.-.......+-+.|+.|+||||+.+.|...++..+ T Consensus 5 ~~~~~~~~~~---~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~ 50 (201) T 1rz3_A 5 DRIDFLCKTI---LAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQG 50 (201) T ss_dssp HHHHHHHHHH---HTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHH---HHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC T ss_conf 9999999999---705679988999889898899999999999835247 No 35 >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Probab=93.98 E-value=0.14 Score=26.87 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=35.7 Q ss_pred HHHHHHHH----HCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 89999988----87999999999999999975987433799997078862578999999972330 Q gi|254781225|r 468 EFLDLVSG----YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 468 ~~~~~l~~----~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) .+.+.+++ |+|-+++++-+.-. .+.|. -++++|+-|.||||+.+.+..+++-. T Consensus 17 ~~~~~~~~l~~~IvGq~~~~~~ll~a---l~~~~-----~vLl~GppGtGKT~lar~la~~~~~~ 73 (331) T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIG---ICTGG-----HILLEGVPGLAKTLSVNTLAKTMDLD 73 (331) T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHH---HHHTC-----CEEEESCCCHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHCCCEECCHHHHHHHHHH---HHCCC-----CEEEECCCCCHHHHHHHHHHHHCCCC T ss_conf 99999998544223769999999999---97699-----58998999852999999999755766 No 36 >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Probab=93.97 E-value=0.19 Score=25.85 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 9999999999975987433799997078862578999999972 Q gi|254781225|r 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 483 ~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) .+++.+++--.....++...++-+.|+-|+||||+...|...| T Consensus 13 ~~~~~~~~~~~~~~~~~~P~iIgiaG~~GSGKSTla~~l~~~l 55 (290) T 1odf_A 13 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290) T ss_dssp HHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 9999999999734589999899967898788999999999999 No 37 >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Probab=93.90 E-value=0.25 Score=25.10 Aligned_cols=141 Identities=14% Similarity=0.169 Sum_probs=92.4 Q ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHHCCCC---CCCEEEEEEECCCCCHHHHHHHHHHH-HCCCC-CCCCCHHHHHHC Q ss_conf 899999888-7999999999999999975987---43379999707886257899999997-23300-034426764201 Q gi|254781225|r 468 EFLDLVSGY-FESEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYA-FGNQY-VINAEASDIMQN 541 (789) Q Consensus 468 ~~~~~l~~~-~~d~e~~~~l~~~~g~~l~g~~---~~~~~~~~~G~G~nGKSt~~~~l~~l-lG~~~-~~~~~~~~~~~~ 541 (789) ...+.|.+- ++-++.+.-+-+.+--|-.|-+ +.-..|++.|+-+-||+-+...|..+ ||+.. ....+.+.+... T Consensus 551 ~L~~~L~~rV~gQ~eAI~~Ia~aI~~~raGl~~~~kP~gsfLF~GPtGvGKtelAkaLA~~lFGs~~~lIr~Dmsey~~~ 630 (854) T 1qvr_A 551 RLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630 (854) T ss_dssp SHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHHCCC T ss_conf 89999973306828999999999999961799999986589986688732799999999995289751699503674465 Q ss_pred C------CC-------CCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEE Q ss_conf 2------45-------5556898899738980999934677760131002454159858732104786068714528999 Q gi|254781225|r 542 R------PP-------EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 (789) Q Consensus 542 ~------~~-------~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~ 608 (789) . |. ..|+--.+-.+-..-.++.+.|.++-..---..|+++.....++ .-+++. +.|.. ..+|| T Consensus 631 ~svsrLiG~ppgyvGy~egG~LteaVr~~P~sVvLlDEIEKAh~~V~~~llq~ld~GrLt--Ds~Gr~-v~f~n-~IIIm 706 (854) T 1qvr_A 631 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLT--DSHGRT-VDFRN-TVIIL 706 (854) T ss_dssp GGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEEC--CSSSCC-EECTT-EEEEE T ss_pred CCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHCCHHHHHHHHHHCCCCCEE--CCCCCE-EECCC-EEEEE T ss_conf 302210279998777056871899998389849997237642899999998752578305--899988-84652-39999 Q ss_pred ECCC Q ss_conf 7388 Q gi|254781225|r 609 VPNK 612 (789) Q Consensus 609 ~~N~ 612 (789) .||- T Consensus 707 TSN~ 710 (854) T 1qvr_A 707 TSNL 710 (854) T ss_dssp ECCT T ss_pred ECCC T ss_conf 6650 No 38 >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Probab=93.86 E-value=0.2 Score=25.78 Aligned_cols=87 Identities=13% Similarity=0.019 Sum_probs=47.8 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC---CCCCHHHHHHCC Q ss_conf 99999999999975987433799997078862578999999972330003442676420124555---568988997389 Q gi|254781225|r 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA---GKANPSLIRLMG 558 (789) Q Consensus 482 ~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~---~~~~~~la~l~g 558 (789) +.+.++.++-.+-.+......-++++|+.|+|||++...|...+|-..+.......+.+..+... -..-++.|+-.. T Consensus 45 i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~~iA~~~~~~~i~i~~~~~~~g~~~~~~~~~i~~~F~~A~~~~ 124 (272) T 1d2n_A 45 VLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQ 124 (272) T ss_dssp HHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSS T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHEECCCHHHHHHHHHHHHHHHHCC T ss_conf 99999999999860689998369988979998999999999997999066504522110143289999999999987517 Q ss_pred CEEEEEECCC Q ss_conf 8099993467 Q gi|254781225|r 559 SRIVIISETN 568 (789) Q Consensus 559 ~r~~~~~E~~ 568 (789) --+++++|.+ T Consensus 125 p~Il~iDEid 134 (272) T 1d2n_A 125 LSCVVVDDIE 134 (272) T ss_dssp EEEEEECCHH T ss_pred CCEEEEEHHH T ss_conf 8378862686 No 39 >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Probab=93.70 E-value=0.047 Score=29.91 Aligned_cols=26 Identities=38% Similarity=0.515 Sum_probs=22.2 Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 99970788625789999999723300 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) ++++|+.|.|||||+++|..+++... T Consensus 3 i~i~G~~GsGKTTLlk~ia~~l~~~~ 28 (178) T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRA 28 (178) T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGE T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC T ss_conf 99999999709999999997418787 No 40 >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Probab=93.64 E-value=0.16 Score=26.32 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=41.7 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC---CCCHHHHHHCCCEEEEEECCCC Q ss_conf 74337999970788625789999999723300034426764201245555---6898899738980999934677 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~---~~~~~la~l~g~r~~~~~E~~~ 569 (789) .+..+-++++|+-|.|||++.+.|.+-+|-.... .+...+..+....+. ..-++.|+...--++++.|.+. T Consensus 46 ~~~p~giLl~GppGtGKT~la~aia~e~~~~~~~-i~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~il~iDeid~ 119 (254) T 1ixz_A 46 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT-ASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA 119 (254) T ss_dssp CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHH T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEE-EEHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHH T ss_conf 9988657877787656279999999763997699-8869963534428999999999999976997999977155 No 41 >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Probab=93.57 E-value=0.056 Score=29.41 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=68.2 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC-CCHHHHHHCCCCCCC-CCC Q ss_conf 988879999999999999999759874337999970788625789999999723300034-426764201245555-689 Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN-AEASDIMQNRPPEAG-KAN 550 (789) Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~-~~~~~~~~~~~~~~~-~~~ 550 (789) ++++.|.++.++.|+.++- .+... + ++++|+.|.||+|+..++.+-++..+... .........++...- ..- T Consensus 20 ~~diig~~~~~~~L~~~i~---~~~~p-~--lLl~GP~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 93 (323) T 1sxj_B 20 LSDIVGNKETIDRLQQIAK---DGNMP-H--MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQI 93 (323) T ss_dssp GGGCCSCTHHHHHHHHHHH---SCCCC-C--EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHH T ss_pred HHHHCCCHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH T ss_conf 9993095999999999997---79999-7--9888959998999999999986699777763244110015749999999 Q ss_pred HHHHH------HCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEE Q ss_conf 88997------389809999346777601310024541598587321047860687145289997388634267984166 Q gi|254781225|r 551 PSLIR------LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 (789) Q Consensus 551 ~~la~------l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~ 624 (789) .+.+. -...+++++.|.+.-..-.... + .....+.......++.||+.-.+ ...+. T Consensus 94 ~~~~~~~~~~~~~~~kiiiide~d~~~~~~q~~--------------l-~~~~e~~~~~~~~i~~~~~~~~i---~~~i~ 155 (323) T 1sxj_B 94 KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQA--------------L-RRTMELYSNSTRFAFACNQSNKI---IEPLQ 155 (323) T ss_dssp HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHT--------------T-HHHHHHTTTTEEEEEEESCGGGS---CHHHH T ss_pred HHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHH--------------H-HHHCCCCCCCEEEEEECCCCCCC---CHHHH T ss_conf 987652023667764899984111111002214--------------5-54013565321344303640213---46777 Q ss_pred EEEEEEECCCCC Q ss_conf 468999658878 Q gi|254781225|r 625 RRYIVIPFDKPI 636 (789) Q Consensus 625 rR~~iipF~~~~ 636 (789) .|...+.|...- T Consensus 156 sRc~~i~~~~~~ 167 (323) T 1sxj_B 156 SQCAILRYSKLS 167 (323) T ss_dssp TTSEEEECCCCC T ss_pred HHHHHHHHCCCC T ss_conf 667676623687 No 42 >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: ATG; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Probab=93.38 E-value=0.15 Score=26.53 Aligned_cols=94 Identities=15% Similarity=0.138 Sum_probs=55.2 Q ss_pred HCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC-- Q ss_conf 879999999999999999759-------87433799997078862578999999972330003442676420124555-- Q gi|254781225|r 476 YFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA-- 546 (789) Q Consensus 476 ~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~-- 546 (789) +.|-++..+-+++++-+-|.. .....+-++++|+.|+|||++.+.+.+-+|-.........+++...+... T Consensus 206 igGl~~~~~~l~e~v~lpl~~pe~~~~~g~~~p~gvLL~GPpGtGKT~laraiA~e~~~~~~~i~~~~~~s~~~~ese~~ 285 (489) T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 285 (489) T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHCCCCCHHHH T ss_conf 24599999999999998710999997579988751688798998815999999998589813763035532236520689 Q ss_pred CCCCHHHHHHCCCEEEEEECCCC Q ss_conf 56898899738980999934677 Q gi|254781225|r 547 GKANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 547 ~~~~~~la~l~g~r~~~~~E~~~ 569 (789) -..-++.|+....-++++.|.+. T Consensus 286 lr~~F~~A~~~~p~Ii~iDeiD~ 308 (489) T 3hu3_A 286 LRKAFEEAEKNAPAIIFIDELDA 308 (489) T ss_dssp HHHHHHHHHHTCSEEEEEESHHH T ss_pred HHHHHHHHHHCCCCCCEEECHHH T ss_conf 99999999870886100054233 No 43 >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Probab=93.30 E-value=0.074 Score=28.62 Aligned_cols=140 Identities=12% Similarity=0.083 Sum_probs=69.4 Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC----CCCCCHHHHHHCCCCCCCCC Q ss_conf 88879999999999999999759874337999970788625789999999723300----03442676420124555568 Q gi|254781225|r 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY----VINAEASDIMQNRPPEAGKA 549 (789) Q Consensus 474 ~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~----~~~~~~~~~~~~~~~~~~~~ 549 (789) +++.|.++.++.|+.++-. +... .++++|+-|.||+|+..++..-++... .................... T Consensus 25 ~dlig~~~~~~~L~~~~~~---~~~p---~lll~Gp~G~GKTtla~~lak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (327) T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT---GSMP---HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVK 98 (327) T ss_dssp TTCCSCHHHHHHHHHHHHH---TCCC---EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHH T ss_pred HHHCCCHHHHHHHHHHHHC---CCCC---EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHH T ss_conf 9923969999999999977---9998---698789899999999999999976401477711344545566489999999 Q ss_pred CHHHH---HHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEE Q ss_conf 98899---738980999934677760131002454159858732104786068714528999738863426798416646 Q gi|254781225|r 550 NPSLI---RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 (789) Q Consensus 550 ~~~la---~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR 626 (789) .+... .-...+++++.|.+....-....++ +...++.-...+++.||+...+. ..+-+| T Consensus 99 ~~~~~~~~~~~~~~viiide~~~~~~~~~~~Ll---------------~~le~~~~~~~~i~~~~~~~~i~---~~l~sr 160 (327) T 1iqp_A 99 EFARTKPIGGASFKIIFLDEADALTQDAQQALR---------------RTMEMFSSNVRFILSCNYSSKII---EPIQSR 160 (327) T ss_dssp HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHH---------------HHHHHTTTTEEEEEEESCGGGSC---HHHHHT T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHH---------------HHHHCCCCCEEEEECCCCHHHCC---HHHHCH T ss_conf 998631236887269998676646576899999---------------98850577514552368631163---678462 Q ss_pred EEEEECCCCCC Q ss_conf 89996588788 Q gi|254781225|r 627 YIVIPFDKPIA 637 (789) Q Consensus 627 ~~iipF~~~~~ 637 (789) ..+|.|+..-+ T Consensus 161 ~~~i~~~~~~~ 171 (327) T 1iqp_A 161 CAIFRFRPLRD 171 (327) T ss_dssp EEEEECCCCCH T ss_pred HHCCCCCCCCH T ss_conf 32021256777 No 44 >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Probab=93.11 E-value=0.075 Score=28.55 Aligned_cols=32 Identities=34% Similarity=0.330 Sum_probs=23.9 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 37999970788625789999999723300034 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~ 532 (789) ++++++.|+.|+||||+.+.|..-++.+...+ T Consensus 2 k~iI~i~G~pGsGKSTla~~L~~~~~~~~~i~ 33 (181) T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181) T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEEC T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEC T ss_conf 88999989999998999999998589989981 No 45 >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* Probab=93.05 E-value=0.073 Score=28.66 Aligned_cols=14 Identities=14% Similarity=-0.021 Sum_probs=5.6 Q ss_pred CHHHHHHHHHHHHC Q ss_conf 12567899987641 Q gi|254781225|r 75 EKTANTFKDTFEIL 88 (789) Q Consensus 75 ~~~~~~~~~~~~~l 88 (789) +.+...+.+.+.-. T Consensus 39 GsGKStildAI~~~ 52 (483) T 3euj_A 39 GAGKSTTMAGFVTA 52 (483) T ss_dssp TSSHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHH T ss_conf 72299999999999 No 46 >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Probab=93.04 E-value=0.19 Score=25.95 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=29.8 Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 99999999975987433799997078862578999999972330 Q gi|254781225|r 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 485 ~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) .+|.++-.+ .+......++-+.|+.++||||+.+.|...|+.. T Consensus 7 ~~~~~~~~~-~~~~~~~~iIgI~G~~gSGKSTla~~L~~~l~~~ 49 (208) T 3c8u_A 7 LCQGVLERL-DPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208) T ss_dssp HHHHHHHHS-CTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHT T ss_pred HHHHHHHHH-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC T ss_conf 999999975-0349996899988989899999999999997342 No 47 >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Probab=92.88 E-value=0.16 Score=26.46 Aligned_cols=139 Identities=13% Similarity=0.169 Sum_probs=71.1 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH-CCCCCCCCC------HHHHHHCCCC- Q ss_conf 98887999999999999999975987433799997078862578999999972-330003442------6764201245- Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-GNQYVINAE------ASDIMQNRPP- 544 (789) Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll-G~~~~~~~~------~~~~~~~~~~- 544 (789) ++++.|.++.++.|..++.. .+....++++|+-|.||+|+...+...+ ++......+ -..+..+... T Consensus 15 ~~d~ig~~~~~~~l~~~~~~-----~~~~h~~L~~Gp~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d 89 (373) T 1jr3_A 15 FADVVGQEHVLTALANGLSL-----GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 89 (373) T ss_dssp TTTSCSCHHHHHHHHHHHHH-----TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSS T ss_pred HHHCCCHHHHHHHHHHHHHC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC T ss_conf 99805969999999999976-----9977147657999988999999999986787788767676535899997589971 Q ss_pred --------C--CCCCCHHHH-----HHC-CCEEEEEECCCCCCCCCC-CEEEEEECCCEEEEEECCCCCCEEEECCEEEE Q ss_conf --------5--556898899-----738-980999934677760131-00245415985873210478606871452899 Q gi|254781225|r 545 --------E--AGKANPSLI-----RLM-GSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 (789) Q Consensus 545 --------~--~~~~~~~la-----~l~-g~r~~~~~E~~~~~~~~~-~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~ 607 (789) . ....+.-+. ... +.+++++.|.+.-..-.. +.+|.| .+..+...++ T Consensus 90 ~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiide~d~l~~~a~n~Llk~l----------------Eep~~~~~~i 153 (373) T 1jr3_A 90 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL----------------EEPPEHVKFL 153 (373) T ss_dssp CEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHH----------------HSCCSSEEEE T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH----------------HCCCCCEEEE T ss_conf 798522102889999999999854665799769998683638999999999998----------------5788673898 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEECCCC Q ss_conf 9738863426798416646899965887 Q gi|254781225|r 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 (789) Q Consensus 608 ~~~N~~P~~~~~d~~~~rR~~iipF~~~ 635 (789) ++||..-.+ ...+-.|...|.|... T Consensus 154 l~t~~~~~~---~~ti~SRc~~i~~~~~ 178 (373) T 1jr3_A 154 LATTDPQKL---PVTILSRCLQFHLKAL 178 (373) T ss_dssp EEESCGGGS---CHHHHTTSEEEECCCC T ss_pred EECCCHHHC---HHHHHHHHHHCCCCCC T ss_conf 844875654---2899965431011346 No 48 >3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens} Probab=92.74 E-value=0.11 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=26.1 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 33799997078862578999999972330003 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~ 531 (789) .+..+.++|+.|+||||+.++|...+|...+. T Consensus 10 pk~II~ItG~~GSGKsTva~~L~e~~~~~~~~ 41 (202) T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCA 41 (202) T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEE T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCEE T ss_conf 83899988979999999999999972998469 No 49 >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Probab=92.61 E-value=0.083 Score=28.29 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=25.7 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 37999970788625789999999723300 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) ++++++.|+-|+||||+.+.|...+|... T Consensus 3 ~~iI~l~G~~GsGKsTvA~~La~~l~~~~ 31 (178) T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPW 31 (178) T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCE T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 73999989999998999999999848997 No 50 >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 Probab=92.37 E-value=0.069 Score=28.81 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.5 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 799997078862578999999972330 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) +-++++|+.|.||||++++|..++... T Consensus 2 khi~I~G~~GsGKTTL~~~l~~~l~~~ 28 (189) T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189) T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCC T ss_conf 899998999822999999998661699 No 51 >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1} Probab=92.34 E-value=0.078 Score=28.45 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=23.1 Q ss_pred CCC-EEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 433-799997078862578999999972330 Q gi|254781225|r 499 KAQ-RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 499 ~~~-~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) -++ ..++++|..|+||||+.+.|...|+.. T Consensus 10 ~~kg~iI~itG~~GSGKSTlAk~La~~L~~~ 40 (186) T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186) T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC T ss_conf 5899599989999999999999999998423 No 52 >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} SCOP: c.37.1.25 Probab=92.23 E-value=0.11 Score=27.55 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.6 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 3799997078862578999999972330 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) .+++++.|+-|+||||+.+.|+.-+|.. T Consensus 2 ~klIii~G~~GsGKTTla~~La~~l~~~ 29 (189) T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNS 29 (189) T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSE T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC T ss_conf 9589998999989899999999980998 No 53 >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A Probab=92.11 E-value=0.39 Score=23.84 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=44.2 Q ss_pred CCCHHHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 79999999999999999759-87433799997078862578999999972330003442676420 Q gi|254781225|r 477 FESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 (789) Q Consensus 477 ~~d~e~~~~l~~~~g~~l~g-~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~ 540 (789) .+|++-..-+-+-++-.|.. ..+...++.|.|.=|.||+||..-+.+-+|-....++|+..+.+ T Consensus 8 l~~e~~t~~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtf~r~i~~~lg~~~~V~SPTF~l~~ 72 (158) T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVE 72 (158) T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEE T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEH T ss_conf 90999999999999999875168998499998898688999999999982766667898334100 No 54 >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Probab=92.08 E-value=0.4 Score=23.74 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.3 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 3379999707886257899999997233 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ...++-+.|+.++|||||.++|+.+|+. T Consensus 79 ~P~IIGIaG~sgsGKSTla~~L~~lL~~ 106 (308) T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSR 106 (308) T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTT T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 9689999899988799999999999710 No 55 >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Probab=92.07 E-value=0.14 Score=26.83 Aligned_cols=17 Identities=0% Similarity=-0.117 Sum_probs=8.0 Q ss_pred CCCCHHHHHHHHHHHHC Q ss_conf 88625789999999723 Q gi|254781225|r 510 GGSGKSTLMNLIKYAFG 526 (789) Q Consensus 510 G~nGKSt~~~~l~~llG 526 (789) ..|=+.||-.+...++. T Consensus 302 t~~~~~vf~~v~d~I~~ 318 (327) T 3ohm_A 302 TENIRFVFAAVKDTILQ 318 (327) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHH T ss_conf 68999999999999999 No 56 >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, cytoplasm, hydrolase, nucleotide-B protease, serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Probab=92.02 E-value=0.46 Score=23.33 Aligned_cols=198 Identities=17% Similarity=0.196 Sum_probs=98.5 Q ss_pred HHHHHH-HCCCHHHHHHHHHHHH-HHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCC----CHHHHHHCC Q ss_conf 999988-8799999999999999-997598743379999707886257899999997233000-344----267642012 Q gi|254781225|r 470 LDLVSG-YFESEEVMDYFTRCVG-MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INA----EASDIMQNR 542 (789) Q Consensus 470 ~~~l~~-~~~d~e~~~~l~~~~g-~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~----~~~~~~~~~ 542 (789) .+-|++ .+|=+++.+.+.++++ ..|.+..+-+ .+.++|+.+-||+++...+...+|.... .+. +...+.+.+ T Consensus 76 ~~~Ld~~hyGl~~vKerIle~lav~~l~~~~~~~-il~l~GPPGvGKTs~ar~ia~~l~~~f~~islgG~~d~~~lrGh~ 154 (543) T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGP-ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154 (543) T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSC-EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------- T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC T ss_conf 9887876437389999999999999864667778-178862876346799998887608981698566455321347887 Q ss_pred CCCCCCCC-H---HHHHHC-CCEEEEEECCCCCCCC-----CCCEEEEEECCCEEEEEECCCCCCE--EEECCE-EEEEE Q ss_conf 45555689-8---899738-9809999346777601-----3100245415985873210478606--871452-89997 Q gi|254781225|r 543 PPEAGKAN-P---SLIRLM-GSRIVIISETNENDEI-----NAAKIKQMTGGDCMTARLNYGNTYS--ESPASF-TPFIV 609 (789) Q Consensus 543 ~~~~~~~~-~---~la~l~-g~r~~~~~E~~~~~~~-----~~~~~K~ltggD~i~ar~~~~~~~~--~~~p~~-~~~~~ 609 (789) ..-.|+.. . .+.+.. .-.+.+.+|.++-..- ..+++ .++ |+-+. ..|.+.+. .|.-.. ..++. T Consensus 155 ~ty~Gs~pg~I~q~l~~~~~~nPVi~lDEIdK~~~~~~gd~~~aLL-~vL--Dp~qn-~~f~D~y~~~~~dls~vlfi~T 230 (543) T 3m6a_A 155 RTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAML-EVL--DPEQN-SSFSDHYIEETFDLSKVLFIAT 230 (543) T ss_dssp ---------CHHHHHHTTCSSSEEEEEEESSSCC---------CCG-GGT--CTTTT-TBCCCSSSCCCCBCSSCEEEEE T ss_pred CCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHH-HHC--CCCCC-CCCCCCCCCCCCCCCCEEEEEE T ss_conf 7756886507999998628888436227555557687888888755-540--76567-6664643368988471799973 Q ss_pred CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHH-HHHHHHHHHHHHHCCCC---CCCCH-HHHHHHH Q ss_conf 3886342679841664689996588788878783342201204479-99999999999987889---88788-9999999 Q gi|254781225|r 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA-KKWFLKGVKAYISKGLD---VDIPE-VCLKAKE 684 (789) Q Consensus 610 ~N~~P~~~~~d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i-~~w~l~g~~~~~~~g~~---~~~p~-~v~~a~~ 684 (789) +|.+. .-+.++..|+.+|+|..... .|+..| .++++. +...++|++ +..++ ++....+ T Consensus 231 aN~~~---~I~~~L~dR~evI~~~~yt~------------~Ek~~Ia~~~LlP--k~~~~~gl~~~~i~i~d~~l~~II~ 293 (543) T 3m6a_A 231 ANNLA---TIPGPLRDRMEIINIAGYTE------------IEKLEIVKDHLLP--KQIKEHGLKKSNLQLRDQAILDIIR 293 (543) T ss_dssp CSSTT---TSCHHHHHHEEEEECCCCCH------------HHHHHHHHHTHHH--HHHHHTTCCGGGCEECHHHHHHHHH T ss_pred CCCCC---CCCHHHHCCCEEEECCCCCH------------HHHHHHHHHHCCH--HHHHHHCCCCCCCCCCHHHHHHHHH T ss_conf 69832---17855750745770698777------------7888889862179--9999848565567555899999999 Q ss_pred HHHHH Q ss_conf 99984 Q gi|254781225|r 685 EERQG 689 (789) Q Consensus 685 ~y~~~ 689 (789) .|-.+ T Consensus 294 ~YTrE 298 (543) T 3m6a_A 294 YYTRE 298 (543) T ss_dssp HHCCC T ss_pred HHCCC T ss_conf 85566 No 57 >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Probab=92.01 E-value=0.067 Score=28.91 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=68.7 Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCHHHHHHCCCCCCCC-CCH Q ss_conf 8887999999999999999975987433799997078862578999999972330003-44267642012455556-898 Q gi|254781225|r 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI-NAEASDIMQNRPPEAGK-ANP 551 (789) Q Consensus 474 ~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~-~~~~~~~~~~~~~~~~~-~~~ 551 (789) .++.|.++.++.|+.++- .+... + ++++|+.|.||+|+...+.+-++..... ......-...++..... ... T Consensus 17 ~diig~~~~~~~l~~~i~---~~~~~-~--~L~~Gp~G~GKttla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (319) T 2chq_A 17 DEVVGQDEVIQRLKGYVE---RKNIP-H--LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (319) T ss_dssp GGSCSCHHHHHHHHTTTT---TTCCC-C--EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHH T ss_pred HHHCCHHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH T ss_conf 991395999999999997---79998-7--99889799999999999999734456787647753567776378999999 Q ss_pred HHHH---H--CCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEE Q ss_conf 8997---3--8980999934677760131002454159858732104786068714528999738863426798416646 Q gi|254781225|r 552 SLIR---L--MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 (789) Q Consensus 552 ~la~---l--~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR 626 (789) ..+. . ...+++++.|.+.-..-....+ .+...+......+++.||.... ....+-+| T Consensus 91 ~~~~~~~~~~~~~~~iiide~d~l~~~~q~~l---------------l~~le~~~~~~~~i~~~~~~~~---~~~~i~sr 152 (319) T 2chq_A 91 EFARTAPIGGAPFKIIFLDEADALTADAQAAL---------------RRTMEMYSKSCRFILSCNYVSR---IIEPIQSR 152 (319) T ss_dssp HHHHSCCSSSCCCEEEEEETGGGSCHHHHHTT---------------GGGTSSSSSSEEEEEEESCGGG---SCHHHHTT T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHH---------------HHHHHCCCCCCEECCCCCCCCC---CCHHHHCC T ss_conf 98874440699648999725331679999999---------------8776127865111025685012---64767473 Q ss_pred EEEEECCCCC Q ss_conf 8999658878 Q gi|254781225|r 627 YIVIPFDKPI 636 (789) Q Consensus 627 ~~iipF~~~~ 636 (789) ..++.|+..- T Consensus 153 ~~~i~~~~~~ 162 (319) T 2chq_A 153 CAVFRFKPVP 162 (319) T ss_dssp CEEEECCCCC T ss_pred HHEEECCCCC T ss_conf 0133147899 No 58 >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Probab=91.93 E-value=0.12 Score=27.21 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=23.1 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 3799997078862578999999972330 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) ...+-+.|+.++|||||.+.|...||.. T Consensus 22 P~IIgItG~~gSGKSTla~~L~~~l~~~ 49 (252) T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252) T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCC T ss_conf 1899988989885999999999996612 No 59 >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A Probab=91.77 E-value=0.066 Score=28.93 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=18.6 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 337999970788625789999999723 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) ..-++.++|+.|+||||++++|..+.- T Consensus 29 ~Ge~~~iiGpsGsGKSTLl~~i~gl~~ 55 (224) T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224) T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC T ss_conf 998999999999849999999971789 No 60 >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Probab=91.72 E-value=0.2 Score=25.77 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=25.5 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 87433799997078862578999999972330 Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) .......+-+.|+.++||||+.+.|...||.. T Consensus 21 ~~~kP~IIgI~G~~gSGKSTla~~L~~~l~~~ 52 (245) T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245) T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC T ss_conf 89995899988989888999999999985615 No 61 >2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl} Probab=91.68 E-value=0.19 Score=25.93 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=25.4 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 433799997078862578999999972330 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) ....++++.|+-++||||+.+.|...+|-. T Consensus 3 ~~p~~I~i~G~~GsGKTTla~~La~~~~~~ 32 (193) T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLP 32 (193) T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCC T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCC T ss_conf 899899998689999799999999996993 No 62 >3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B} Probab=91.56 E-value=0.49 Score=23.13 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=46.2 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC--CCCHHHHHHCCCCC Q ss_conf 8999998887999999999999999975987433799997078862578999999972330003--44267642012455 Q gi|254781225|r 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI--NAEASDIMQNRPPE 545 (789) Q Consensus 468 ~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~--~~~~~~~~~~~~~~ 545 (789) .|+.|+.. -++++.+..++.++- +.. ...+++||+.|.|||.++..+.+-+...... ..+...... T Consensus 26 tfdnF~~~-~~N~~a~~~l~~~~~----~~~--~~~l~l~Gp~GsGKThL~~ai~~~~~~~~~~~~~~~~~~~~~----- 93 (242) T 3bos_A 26 TFTSYYPA-AGNDELIGALKSAAS----GDG--VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS----- 93 (242) T ss_dssp STTTSCC---CCHHHHHHHHHHHH----TCS--CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG----- T ss_pred CHHCCCCC-CCHHHHHHHHHHHHH----CCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----- T ss_conf 46501415-759999999998873----899--885988899999899999999998542113444448888764----- Q ss_pred CCCCCHHHHHHCCCEEEEEECCCC Q ss_conf 556898899738980999934677 Q gi|254781225|r 546 AGKANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 546 ~~~~~~~la~l~g~r~~~~~E~~~ 569 (789) .....+..+....++++.|.+. T Consensus 94 --~~~~~~~~~~~~~~l~iDdi~~ 115 (242) T 3bos_A 94 --ISTALLEGLEQFDLICIDDVDA 115 (242) T ss_dssp --SCGGGGTTGGGSSEEEEETGGG T ss_pred --HHHHHHHHHHHCCCCEEHHHHH T ss_conf --1899999987458712301776 No 63 >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* Probab=91.49 E-value=0.14 Score=26.73 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=24.6 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 79999707886257899999997233000 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) +.++++|..|+||||+.+.|...|+.... T Consensus 6 ~~I~l~G~~GsGKSTia~~La~~L~~~~~ 34 (179) T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGI 34 (179) T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC T ss_conf 79998899998999999999999744588 No 64 >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Probab=91.44 E-value=0.17 Score=26.27 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=42.8 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC--CCCCCHHHHHHCCCEEEEEECCCC Q ss_conf 43379999707886257899999997233000344267642012455--556898899738980999934677 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE--AGKANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~--~~~~~~~la~l~g~r~~~~~E~~~ 569 (789) ...+-++++|+-|.|||++.+.+..-+|-.........+.+...+.. .-..-++.|+-...-++++.|.+. T Consensus 42 ~~~~giLL~GppGtGKT~la~aia~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~f~~a~~~~p~il~~d~~~~ 114 (274) T 2x8a_A 42 VTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDA 114 (274) T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTT T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCHH T ss_conf 9887268878999886289999999827871897647833403661679999999987762995898501033 No 65 >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1 Probab=91.34 E-value=0.22 Score=25.41 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=37.4 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 999988879999999999999999759874337999970788625789999999723300 Q gi|254781225|r 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 470 ~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) .+++..=+-++++..|++.++- ....+++.|+.++||||+++.+...+.... T Consensus 237 ~dLv~~G~~~~~~~~~l~~~v~--------~~~~ili~G~tgSGKTT~L~all~~i~~~~ 288 (511) T 2oap_1 237 IDLIEKGTVPSGVLAYLWLAIE--------HKFSAIVVGETASGKTTTLNAIMMFIPPDA 288 (511) T ss_dssp HHHHHTTSSCHHHHHHHHHHHH--------TTCCEEEEESTTSSHHHHHHHHGGGSCTTC T ss_pred HHHHHCCCCHHHHHHHHHHHHH--------CCCEEEEECCCCCCHHHHHHHHHHHHHHCC T ss_conf 9997658982999999999986--------695599989998988999999999645405 No 66 >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Probab=91.29 E-value=0.17 Score=26.21 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=10.6 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC Q ss_conf 99999999999999997598743379999707 Q gi|254781225|r 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 (789) Q Consensus 478 ~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~ 509 (789) |...+++.++.+.. .-..++++.|- T Consensus 189 p~~~vi~~~~~~~~-------~G~~Ii~~sgR 213 (301) T 1ltq_A 189 INPMVVELSKMYAL-------MGYQIVVVSGR 213 (301) T ss_dssp BCHHHHHHHHHHHH-------TTCEEEEEECS T ss_pred CCHHHHHHHHHHHH-------CCCEEEEEECC T ss_conf 76789999999985-------79869999377 No 67 >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Probab=91.26 E-value=0.28 Score=24.82 Aligned_cols=18 Identities=28% Similarity=0.147 Sum_probs=10.8 Q ss_pred CCCEEEECCCCCCCCCCEE Q ss_conf 6843880477688887457 Q gi|254781225|r 131 CGQYFVAYNIHPKTKKEYT 149 (789) Q Consensus 131 ~G~q~V~~gshp~Tg~~Y~ 149 (789) ..+.+++.| .|+|||.++ T Consensus 163 ~~~~~lI~G-gpGTGKTtt 180 (608) T 1w36_D 163 TRRISVISG-GPGTGKTTT 180 (608) T ss_dssp TBSEEEEEC-CTTSTHHHH T ss_pred CCCEEEEEE-CCCCHHHHH T ss_conf 099089993-899729999 No 68 >1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* Probab=91.23 E-value=0.55 Score=22.83 Aligned_cols=260 Identities=13% Similarity=0.085 Sum_probs=112.5 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEE--EEECCCCCHHHHHHHHHHHHCCCC--------C-----CCC-C-HHH--- Q ss_conf 9999999999999999759874337999--970788625789999999723300--------0-----344-2-676--- Q gi|254781225|r 478 ESEEVMDYFTRCVGMALLGGNKAQRFIH--IRGVGGSGKSTLMNLIKYAFGNQY--------V-----INA-E-ASD--- 537 (789) Q Consensus 478 ~d~e~~~~l~~~~g~~l~g~~~~~~~~~--~~G~G~nGKSt~~~~l~~llG~~~--------~-----~~~-~-~~~--- 537 (789) -|.++.+....+....+.|.......++ ++|+.|.|||++.+.+...+.... . ... + ... T Consensus 27 Re~ei~~l~~~~~~~~~~g~~~~~~~~i~~i~GppGTGKT~~~~~v~~~l~~~~~~~~~~i~~v~in~~~~~t~~~~~~~ 106 (412) T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSL 106 (412) T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHH T ss_conf 69999999999999997499999823898466899988999999999999864355568704999324136759999998 Q ss_pred -HHH--CCCCCCCCCCHHHH-------HHCCC-EEEEEECCCCCCCCC---CCEEEEEECCCEEEEEECCCCCCEEEECC Q ss_conf -420--12455556898899-------73898-099993467776013---10024541598587321047860687145 Q gi|254781225|r 538 -IMQ--NRPPEAGKANPSLI-------RLMGS-RIVIISETNENDEIN---AAKIKQMTGGDCMTARLNYGNTYSESPAS 603 (789) Q Consensus 538 -~~~--~~~~~~~~~~~~la-------~l~g~-r~~~~~E~~~~~~~~---~~~~K~ltggD~i~ar~~~~~~~~~~~p~ 603 (789) +.+ ...+..|.+..++. .-.+. .+++++|.+.=.... ...+-.++ .+.... .+. ..... T Consensus 107 i~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~viilDEiD~L~~~~~~~~~~l~~L~-----~~~e~l-~~~-~~~~~ 179 (412) T 1w5s_A 107 IVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLL-----RVHEEI-PSR-DGVNR 179 (412) T ss_dssp HHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHH-----THHHHS-CCT-TSCCB T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCHHHHHHHH-----HHHHHC-CCC-CCCCC T ss_conf 72002554786673189999999999986068754899730023024442056888999-----998741-021-25662 Q ss_pred EEEEEECCCCCCCCCCCC---CEEEE-EEEEECCCCCCC--------------CCCCHHHH-------HCCCCH--HHHH Q ss_conf 289997388634267984---16646-899965887888--------------78783342-------201204--4799 Q gi|254781225|r 604 FTPFIVPNKHLFVRNPDD---AWWRR-YIVIPFDKPIAN--------------RDASFAQK-------LETKYT--LEAK 656 (789) Q Consensus 604 ~~~~~~~N~~P~~~~~d~---~~~rR-~~iipF~~~~~~--------------~d~~~~~~-------~~~~e~--~~i~ 656 (789) ..+++.+|.+......+. .+-.| -..|.|+.-=.+ .+..+.+. ....+. .|.. T Consensus 180 ~~~I~i~n~~~~~~~l~~~~~~~~sr~~~~i~F~pY~~~el~~IL~~R~~~~~~~~~~~~~al~~ia~~~~~~~~~~Gd~ 259 (412) T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSA 259 (412) T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCH T ss_pred EEEEEECCCHHHHHHHHHHCCCHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCH T ss_conf 26887247657888888636420012663675699999999999999999734466789899999999987633789999 Q ss_pred HHHHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHC---CHHH-------HHHHHHEE--ECCCCEECHHHHHHHHHH Q ss_conf 99999999----99987889887889999999999842---6388-------88754326--268841117999999999 Q gi|254781225|r 657 KWFLKGVK----AYISKGLDVDIPEVCLKAKEEERQGT---DTYQ-------AWIDDCCD--IGENLWEESHSLAKSYSE 720 (789) Q Consensus 657 ~w~l~g~~----~~~~~g~~~~~p~~v~~a~~~y~~~~---D~v~-------~fi~e~ce--~~~~~~~~~~~l~~~y~~ 720 (789) .-++.-|. ....+|-.....+.|..|.++..... +.+. ..+...+. ..........++|+.|.. T Consensus 260 R~ai~ll~~A~~~A~~~~~~~It~~~v~~A~~~~~~~~~~~~~~~~l~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~y~~ 339 (412) T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYED 339 (412) T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHH T ss_conf 99999999999999980899849999999999976521157887249998999999999986469974009999999999 Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 99850466755545256899998635 Q gi|254781225|r 721 YREQELNYDRKRISTRTVTLNLKQKG 746 (789) Q Consensus 721 ~~~~~~~~~~~~~s~~~~~~~l~~~g 746 (789) .|.+.. +.++++.+.|..-|.++. T Consensus 340 ~~~~~~--~~~~~~~~~~~~~l~~Le 363 (412) T 1w5s_A 340 ASLTMY--NVKPRGYTQYHIYLKHLT 363 (412) T ss_dssp HHHHHS--CCCCCCHHHHHHHHHHHH T ss_pred HHHHHC--CCCCCCHHHHHHHHHHHH T ss_conf 998753--788742989999999999 No 69 >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Probab=91.10 E-value=0.1 Score=27.66 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=19.6 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 9999707886257899999997233 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ++.+.|+-|+||||++++|..++.. T Consensus 26 ~~~iiGpsGsGKSTllr~i~Gl~~p 50 (240) T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP 50 (240) T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 9999979998199999999729999 No 70 >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 2pz3_A* 2pz2_A* 1as0_A* 1as2_A* 1as3_A* 1gil_A* ... Probab=91.02 E-value=0.16 Score=26.36 Aligned_cols=16 Identities=0% Similarity=-0.130 Sum_probs=7.3 Q ss_pred CCCHHHHHHHHHHHHC Q ss_conf 8625789999999723 Q gi|254781225|r 511 GSGKSTLMNLIKYAFG 526 (789) Q Consensus 511 ~nGKSt~~~~l~~llG 526 (789) .|=+.||-.+-..++- T Consensus 329 ~~~~~vf~~v~d~Il~ 344 (353) T 1cip_A 329 KNVQFVFDAVTDVIIK 344 (353) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 8999999999999999 No 71 >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Probab=91.01 E-value=0.12 Score=27.10 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=25.5 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 379999707886257899999997233000 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) ..++++.|+.|+||||+.+.|...+|-..+ T Consensus 9 G~iI~i~G~~GsGKTT~a~~La~~lg~~~~ 38 (191) T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKV 38 (191) T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEE T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEE T ss_conf 818999899999889999999999699989 No 72 >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Probab=90.92 E-value=0.59 Score=22.60 Aligned_cols=161 Identities=14% Similarity=0.169 Sum_probs=92.4 Q ss_pred CHHHHCCEECCCCCCCCCC-----HHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCC---CCCEEEEEEECCCCCHHHH Q ss_conf 8655010013788887579-----4789999988-87999999999999999975987---4337999970788625789 Q gi|254781225|r 447 TKELYITKSTGTPFVEGEP-----SQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTL 517 (789) Q Consensus 447 ~~~~~~t~~~~~~y~~~a~-----~p~~~~~l~~-~~~d~e~~~~l~~~~g~~l~g~~---~~~~~~~~~G~G~nGKSt~ 517 (789) +-+..+...++++-..-.. --...+.|.+ ++|-++.++-+-+.+--+-.|-. +.-.-|++.||.|.||+-+ T Consensus 425 d~~~v~~~~tgip~~~l~~~~~~~l~~l~~~l~~~viGQ~~Ai~~v~~~i~~~~agl~~~~rP~~s~Lf~GPtGvGKTel 504 (758) T 1r6b_X 425 DIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEV 504 (758) T ss_dssp HHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHH T ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHH T ss_conf 69999999958985101222689999889999857128688999999999999728899888652278867887568999 Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHCC--CCCCCCC-----------CHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECC Q ss_conf 9999997233000344267642012--4555568-----------98899738980999934677760131002454159 Q gi|254781225|r 518 MNLIKYAFGNQYVINAEASDIMQNR--PPEAGKA-----------NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 (789) Q Consensus 518 ~~~l~~llG~~~~~~~~~~~~~~~~--~~~~~~~-----------~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltgg 584 (789) ...|...++..- ...+.+.+++.- ..-.|.+ -.+..+-..-.++.++|.++-..---..|-++..+ T Consensus 505 Ak~LA~~l~~~l-ir~Dmsey~e~~svs~LiGappgyvG~~~gg~Lt~~vr~~p~sVvllDEiEKAh~~V~~~lLqild~ 583 (758) T 1r6b_X 505 TVQLSKALGIEL-LRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDN 583 (758) T ss_dssp HHHHHHHHTCEE-EEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCE-EEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 999999723665-9831422356217888718997654534688300877627566554455543546788776766067 Q ss_pred CEEEEEECCCCCCEEEECCEEEEEECCC Q ss_conf 8587321047860687145289997388 Q gi|254781225|r 585 DCMTARLNYGNTYSESPASFTPFIVPNK 612 (789) Q Consensus 585 D~i~ar~~~~~~~~~~~p~~~~~~~~N~ 612 (789) ..++-.. ++. +.|..+ .++|.||- T Consensus 584 G~ltd~~--Gr~-vdf~n~-iiI~TSNi 607 (758) T 1r6b_X 584 GTLTDNN--GRK-ADFRNV-VLVMTTNA 607 (758) T ss_dssp SEEEETT--TEE-EECTTE-EEEEEECS T ss_pred CCCCCCC--CCC-CCCCCC-EEEECCCH T ss_conf 6120799--955-147562-79863312 No 73 >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Probab=90.76 E-value=0.058 Score=29.31 Aligned_cols=140 Identities=11% Similarity=0.079 Sum_probs=68.3 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC----------CCCCC-HHH---- Q ss_conf 988879999999999999999759874337999970788625789999999723300----------03442-676---- Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY----------VINAE-ASD---- 537 (789) Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~----------~~~~~-~~~---- 537 (789) ++++.|.++.++.|+.++- .....+ ++++|+-|.||+|+..++.+-++... .+... ... T Consensus 36 ~~divg~~~~~~~L~~~i~----~~~~~~--lLl~Gp~G~GKTt~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (353) T 1sxj_D 36 LDEVTAQDHAVTVLKKTLK----SANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREK 109 (353) T ss_dssp TTTCCSCCTTHHHHHHHTT----CTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTH T ss_pred HHHHCCCHHHHHHHHHHHH----CCCCCE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHH T ss_conf 9991396999999999997----699875--9988959998999999999844787544544012110134573077889 Q ss_pred HHH-CCCCCCCCCCHHHH--HHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCC Q ss_conf 420-12455556898899--738980999934677760131002454159858732104786068714528999738863 Q gi|254781225|r 538 IMQ-NRPPEAGKANPSLI--RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 (789) Q Consensus 538 ~~~-~~~~~~~~~~~~la--~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P 614 (789) +.. .+..........+- .....+++++.|.+.-..-....+ . +...+......++++||+.- T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~kviiiDe~d~l~~~~~~~l--------------~-~~~e~~~~~~~~i~~~~~~~ 174 (353) T 1sxj_D 110 VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSAL--------------R-RTMETYSGVTRFCLICNYVT 174 (353) T ss_dssp HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHH--------------H-HHHHHTTTTEEEEEEESCGG T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHH--------------H-HHCCCCCCCCEEEECCCCCC T ss_conf 99998774422356676504667725999967030689999998--------------7-52036874322322147621 Q ss_pred CCCCCCCCEEEEEEEEECCCCC Q ss_conf 4267984166468999658878 Q gi|254781225|r 615 FVRNPDDAWWRRYIVIPFDKPI 636 (789) Q Consensus 615 ~~~~~d~~~~rR~~iipF~~~~ 636 (789) .+ ...+-+|..+|.|+..- T Consensus 175 ~i---~~~i~sr~~~i~f~~~~ 193 (353) T 1sxj_D 175 RI---IDPLASQCSKFRFKALD 193 (353) T ss_dssp GS---CHHHHHHSEEEECCCCC T ss_pred CC---CHHHHCCCHHHHCCCCC T ss_conf 06---73652220122026788 No 74 >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Probab=90.53 E-value=0.22 Score=25.46 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=25.8 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 3799997078862578999999972330003 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~ 531 (789) -+++++.|+-|+||||...+|..-+|-...+ T Consensus 4 ~k~Ivl~G~PGSGK~T~a~~Lae~~g~~~is 34 (186) T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186) T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCEEEC T ss_conf 8889998899998799999999986990763 No 75 >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Probab=90.43 E-value=0.35 Score=24.12 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=41.2 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHH Q ss_conf 79999999999999999759874337999970788625789999999723300034426764201245555689889973 Q gi|254781225|r 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 (789) Q Consensus 477 ~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l 556 (789) +|+.. ..-+++.++-. ......+.=+++.|..+.|||+++|.| +|.......+....+.... ...... T Consensus 17 ~p~~~-~~~~~~~l~~l-~~~~~~~l~I~lvG~tg~GKSSliN~l---lg~~~~~v~~~~~~T~~~~-------~~~~~~ 84 (270) T 1h65_A 17 FAPAT-QTKLLELLGNL-KQEDVNSLTILVMGKGGVGKSSTVNSI---IGERVVSISPFQSEGPRPV-------MVSRSR 84 (270) T ss_dssp SCHHH-HHHHHHHHHHH-HHTTCCEEEEEEEESTTSSHHHHHHHH---HTSCCSCCCSSSCCCSSCE-------EEEEEE T ss_pred CHHHH-HHHHHHHHHHH-HHCCCCCEEEEEECCCCCCHHHHHHHH---HCCCEEEEECCCCCEEEEE-------EEEEEE T ss_conf 44999-99999999998-745788508999898996399999998---3997668705798425589-------999998 Q ss_pred CCCEEEEEECCC Q ss_conf 898099993467 Q gi|254781225|r 557 MGSRIVIISETN 568 (789) Q Consensus 557 ~g~r~~~~~E~~ 568 (789) .|.++.+++-|. T Consensus 85 ~g~~i~vIDTPG 96 (270) T 1h65_A 85 AGFTLNIIDTPG 96 (270) T ss_dssp TTEEEEEEECCC T ss_pred CCEEEEEEECCC T ss_conf 997899986777 No 76 >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Probab=90.43 E-value=0.24 Score=25.26 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.8 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 799997078862578999999972330 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) +++++.|+-|+||||+.+.|...|+.. T Consensus 2 kiivi~G~~GsGKsT~~~~L~~~l~~~ 28 (194) T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194) T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC T ss_conf 299998999979899999999999875 No 77 >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Probab=90.40 E-value=0.16 Score=26.37 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=24.2 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 37999970788625789999999723300 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) .+-+++.|+.|.||||+.++|..-||-.. T Consensus 4 ~k~Iil~G~~GsGKSTv~k~La~~lg~~~ 32 (173) T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF 32 (173) T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEE T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 88399989999988999999999949986 No 78 >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Probab=90.24 E-value=0.59 Score=22.61 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=35.3 Q ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 88879999999999999999759874337999970788625789999999723 Q gi|254781225|r 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 474 ~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) +++.+-++.++-+-..+-.++.+.... .++++|+.|.||+|+...+.+-+. T Consensus 20 ~~~~~re~~~~~l~~~l~~~i~~~~~~--~~li~GppG~GKTtlar~v~~~L~ 70 (384) T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKF--SNLFLGLTGTGKTFVSKYIFNEIE 70 (384) T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCC--EEEEEECTTSSHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHH T ss_conf 347986999999999999997099986--089987998829999999999987 No 79 >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Probab=90.18 E-value=0.23 Score=25.34 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.7 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 999970788625789999999723300 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) ++++.|+-|+||||+...|..-||-.. T Consensus 3 iI~i~G~~GsGKSTva~~La~~L~~~~ 29 (173) T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPI 29 (173) T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCE T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 999978999999999999999969780 No 80 >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* Probab=90.13 E-value=0.28 Score=24.72 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=25.4 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 37999970788625789999999723300 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) +-+.+++|+-|+|||++++.|..+|+..+ T Consensus 26 ~g~~~I~G~NGsGKSsildAi~~~l~g~~ 54 (182) T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLGGLS 54 (182) T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTTCCC T ss_pred CCCEEEECCCCCCCHHHHHHHHHHCCCCC T ss_conf 99579999999972147677786416420 No 81 >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* Probab=89.98 E-value=0.3 Score=24.56 Aligned_cols=16 Identities=0% Similarity=-0.172 Sum_probs=8.1 Q ss_pred CCCHHHHHHHHHHHHC Q ss_conf 8625789999999723 Q gi|254781225|r 511 GSGKSTLMNLIKYAFG 526 (789) Q Consensus 511 ~nGKSt~~~~l~~llG 526 (789) .|=+.+|-.+-..++. T Consensus 370 ~~i~~vf~~V~d~Il~ 385 (402) T 1azs_C 370 ENIRRVFNDCRDIIQR 385 (402) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 8999999999999999 No 82 >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Probab=89.95 E-value=0.2 Score=25.75 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=26.3 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 43379999707886257899999997233000 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) ...+++++.|+.+.||||+.+.|..-++.... T Consensus 18 ~~gkiivi~GpsGsGK~Tl~~~L~~~~~~~~~ 49 (207) T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIPNLHF 49 (207) T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHSTTCEE T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEE T ss_conf 79808999898988999999999966899717 No 83 >1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A* Probab=89.88 E-value=0.2 Score=25.77 Aligned_cols=72 Identities=11% Similarity=0.071 Sum_probs=42.8 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC--CCCCHHHHHHCCCEEEEEECCCC Q ss_conf 7433799997078862578999999972330003442676420124555--56898899738980999934677 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA--GKANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~--~~~~~~la~l~g~r~~~~~E~~~ 569 (789) .....-+++||+.++||+.+...+..-+|-.........++....+.+. -..-|+.|+...--+++++|.+. T Consensus 508 ~~~~~giLl~GPpGtGKT~la~a~A~e~~~~fi~v~~~~l~~~~vGese~~ir~~F~~Ar~~~p~iifiDEids 581 (806) T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806) T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHH T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHH T ss_conf 98886078767999962289999988747926999652652311036999999999999855996132013556 No 84 >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, ABC ATPase, dimer, kleisin, mitosis, cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Probab=89.78 E-value=0.26 Score=24.98 Aligned_cols=19 Identities=11% Similarity=0.272 Sum_probs=7.7 Q ss_pred CCCCHHHHHHHHHHHHCCC Q ss_conf 6881256789998764189 Q gi|254781225|r 72 SKDEKTANTFKDTFEILHG 90 (789) Q Consensus 72 ~~d~~~~~~~~~~~~~l~g 90 (789) +..+.+...+.+.+.=..| T Consensus 33 G~NGsGKS~ileAi~~~lg 51 (430) T 1w1w_A 33 GPNGSGKSNMMDAISFVLG 51 (430) T ss_dssp CSTTSSHHHHHHHHHHHTT T ss_pred CCCCCCHHHHHHHHHHHHC T ss_conf 9999988999999999967 No 85 >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 Probab=89.73 E-value=0.12 Score=27.22 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=79.9 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC------CCC----- Q ss_conf 478999998887999999999999999975987433799997078862578999999972330003------442----- Q gi|254781225|r 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI------NAE----- 534 (789) Q Consensus 466 ~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~------~~~----- 534 (789) +|.+. +.+|.|-++++.=+. ++.+..|.. -+++.|+-|.||||+.+.+..+|++.... ... T Consensus 18 ~~~~~--f~~ivGq~~~kraL~--laa~~~~~h----hvLl~G~PG~GKT~lar~la~lLP~~~~~e~~~~~~~~~~~~~ 89 (350) T 1g8p_A 18 RPVFP--FSAIVGQEDMKLALL--LTAVDPGIG----GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIP 89 (350) T ss_dssp CCCCC--GGGSCSCHHHHHHHH--HHHHCGGGC----CEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSC T ss_pred CCCCC--HHHCCCCHHHHHHHH--HHHHCCCCC----EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCC T ss_conf 89999--766169499999999--987356997----1899899985799999999875787115405764677522260 Q ss_pred --------------------------HHHHHHC---C--CCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEC Q ss_conf --------------------------6764201---2--45555689889973898099993467776013100245415 Q gi|254781225|r 535 --------------------------ASDIMQN---R--PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 (789) Q Consensus 535 --------------------------~~~~~~~---~--~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltg 583 (789) ..++..- . ........+....+....+++++|.++-..-.-+.|-+... T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~G~~d~~~~~~~G~~~~~~G~l~~Ah~gvl~lDEi~~~~~~~~~aLle~me 169 (350) T 1g8p_A 90 DWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQ 169 (350) T ss_dssp TTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHH T ss_pred HHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHC T ss_conf 23301234433478863325777876545475102213027862242145330148752245565530889999986641 Q ss_pred CCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEE Q ss_conf 985873210478606871452899973886342679841664689996 Q gi|254781225|r 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 (789) Q Consensus 584 gD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iip 631 (789) ...++..+- +.. +.+...|.++.++|-.| ..-..++..|+.+.- T Consensus 170 e~~v~i~r~-g~~-~~~P~~~~liaa~Np~~--~~l~~~llDRf~~~i 213 (350) T 1g8p_A 170 SGENVVERD-GLS-IRHPARFVLVGSGNPEE--GDLRPQLLDRFGLSV 213 (350) T ss_dssp HSEEEECCT-TCC-EEEECCEEEEEEECSCS--CCCCHHHHTTCSEEE T ss_pred CCCEEECCC-CCE-ECCCCCEEEEECCCCCC--CCCCHHHHHHCCCEE T ss_conf 686675688-726-54787669983256777--768845650315256 No 86 >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Probab=89.72 E-value=0.22 Score=25.41 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=22.9 Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 999707886257899999997233000 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) ++++|+.|.||||+.++|..-||-..+ T Consensus 5 Ivl~G~~GsGKSTv~~~LA~~lg~~~i 31 (173) T 1e6c_A 5 IFMVGARGCGMTTVGRELARALGYEFV 31 (173) T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEE T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE T ss_conf 999889999889999999999699979 No 87 >1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A* Probab=89.71 E-value=0.13 Score=27.04 Aligned_cols=22 Identities=50% Similarity=0.819 Sum_probs=9.8 Q ss_pred EEEEEECCCCCHHHHHHHHHHH Q ss_conf 9999707886257899999997 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYA 524 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~l 524 (789) ++.+.|+.|+||||++++|..+ T Consensus 33 ~~~ivG~SGsGKSTLl~~i~gl 54 (235) T 1l2t_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235) T ss_dssp EEEEECSTTSSHHHHHHHHTTS T ss_pred EEEEECCCCCCHHHHHHHHHHC T ss_conf 9999889999899999999807 No 88 >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3add_A* 3adc_A* 3adb_A* Probab=89.56 E-value=0.27 Score=24.92 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=14.7 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 7999970788625789999999723 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) +++++.|..|+||||+.+.|...++ T Consensus 5 ~LIil~G~PGSGKST~A~~L~~~l~ 29 (260) T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260) T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 8999889999988999999999998 No 89 >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Probab=89.54 E-value=0.36 Score=24.02 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=26.2 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 74337999970788625789999999723300 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) ......+++.|+.|+||||....|..-+|-.. T Consensus 12 ~~~~~iI~i~G~pGSGKsT~ak~La~~~g~~~ 43 (203) T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVH 43 (203) T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEE T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 99983899989999987999999999959926 No 90 >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330} Probab=89.51 E-value=0.47 Score=23.28 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=42.3 Q ss_pred EEECCCCCCCCCCHHHHCCEECCCCC-CCCC-CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC Q ss_conf 79743888558986550100137888-8757-947899999888799999999999999997598743379999707886 Q gi|254781225|r 435 ILDLETGQKVKPTKELYITKSTGTPF-VEGE-PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 (789) Q Consensus 435 v~dl~t~~~~~~~~~~~~t~~~~~~y-~~~a-~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~n 512 (789) .+-++.......+.++++..-+-... .+.. -.|.-...+ +.....++..||+.++- + .+-+++.|+.++ T Consensus 116 ~i~IRk~~~~~~tl~~lv~~G~~~~~~~~~~~~~~~~~~l~-~~~~~~e~~~~L~~~v~----~----~~nili~G~tgS 186 (361) T 2gza_A 116 SVTIRKPSFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELL-ALKEAGDYMSFLRRAVQ----L----ERVIVVAGETGS 186 (361) T ss_dssp EEEEECCCCCCCCHHHHHHTTTTSCCCCSCSCCCHHHHHHH-HHHHHTCHHHHHHHHHH----T----TCCEEEEESSSS T ss_pred EEEEECCCCCHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHH----C----CCCEEEECCCCC T ss_conf 89982576530001557653862011101233581467765-20104899999999997----3----985999899999 Q ss_pred CHHHHHHHHHHHHC Q ss_conf 25789999999723 Q gi|254781225|r 513 GKSTLMNLIKYAFG 526 (789) Q Consensus 513 GKSt~~~~l~~llG 526 (789) ||||+++.|...+. T Consensus 187 GKTTll~al~~~ip 200 (361) T 2gza_A 187 GKTTLMKALMQEIP 200 (361) T ss_dssp CHHHHHHHHHTTSC T ss_pred CHHHHHHHHHHHHH T ss_conf 78999999986211 No 91 >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* 3hr7_A Probab=89.47 E-value=0.24 Score=25.21 Aligned_cols=27 Identities=30% Similarity=0.376 Sum_probs=23.0 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 999970788625789999999723300 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) -++++|..|+||||+.+.|...||=.+ T Consensus 9 ~IiliG~~GsGKSTvak~La~~lg~~~ 35 (168) T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEV 35 (168) T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCE T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 599989999989999999999969987 No 92 >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Probab=89.42 E-value=0.27 Score=24.84 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=24.4 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 37999970788625789999999723300 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) -+.+++.|+.|+||||....|..-+|-.. T Consensus 12 ~kiI~l~G~pGSGKsT~a~~La~~~~~~~ 40 (199) T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTH 40 (199) T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEE T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCEE T ss_conf 86899989999998999999999869906 No 93 >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 Probab=89.30 E-value=0.39 Score=23.79 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=25.3 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 379999707886257899999997233000 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) .+|+.+-|.-|+||||+++.|..-|....+ T Consensus 2 pkfI~iEG~~GsGKST~~~~L~~~l~~~~i 31 (241) T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241) T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCC T ss_conf 808999899988499999999999831598 No 94 >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Probab=89.19 E-value=0.4 Score=23.77 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=9.4 Q ss_pred EEEEEEEC-CCCCHHHHHHHHHHH Q ss_conf 79999707-886257899999997 Q gi|254781225|r 502 RFIHIRGV-GGSGKSTLMNLIKYA 524 (789) Q Consensus 502 ~~~~~~G~-G~nGKSt~~~~l~~l 524 (789) ..++++|. ++....-++..+... T Consensus 325 ~ii~i~G~~~dkd~~~~~~~~~~~ 348 (422) T 1w78_A 325 RVLAVIGMLHDKDIAGTLAWLKSV 348 (422) T ss_dssp CEEEEECCBTTSCHHHHHHHHHTT T ss_pred CEEEECCCCCCCCHHHHHHHHHHH T ss_conf 537821555786899999998865 No 95 >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Probab=89.17 E-value=0.36 Score=24.07 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=24.2 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 37999970788625789999999723300 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) ...+++.|+.|+||||+...|..-+|-.. T Consensus 6 p~iI~i~G~pGsGKsTia~~Lae~~~~~~ 34 (194) T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVH 34 (194) T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEE T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 94899989999988999999999969945 No 96 >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Probab=89.15 E-value=0.34 Score=24.18 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=28.9 Q ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHH---HEEECCCCEECHHHHHHH Q ss_conf 87889999999999842638888754---326268841117999999 Q gi|254781225|r 674 DIPEVCLKAKEEERQGTDTYQAWIDD---CCDIGENLWEESHSLAKS 717 (789) Q Consensus 674 ~~p~~v~~a~~~y~~~~D~v~~fi~e---~ce~~~~~~~~~~~l~~~ 717 (789) ..++.++.-.+.|.++..+|..|..+ +++++.+. +..++++. T Consensus 168 d~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~Id~~~--~i~eV~~~ 212 (217) T 3be4_A 168 DNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKL--PPKEVTEQ 212 (217) T ss_dssp GSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTS--CHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CHHHHHHH T ss_conf 8899999999999999999999999669889998999--99999999 No 97 >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Probab=89.10 E-value=0.27 Score=24.83 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=22.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 99997078862578999999972330 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) .++++|..|.||||+..+|...||-. T Consensus 4 ~Iil~G~~GsGKSTiak~La~~L~~~ 29 (184) T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184) T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC T ss_conf 89998799998899999999996989 No 98 >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Probab=89.07 E-value=0.35 Score=24.15 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=24.3 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 37999970788625789999999723300 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) ..++++.|+.++||||....|..-+|-.. T Consensus 3 ~~~I~i~G~pGsGKsT~a~~Lae~~g~~~ 31 (196) T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH 31 (196) T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 73899989999998999999999859966 No 99 >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Probab=89.06 E-value=0.17 Score=26.14 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=23.6 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 37999970788625789999999723300 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) +..+-+.|+-++|||||++.|..++-..+ T Consensus 2 ~~Ii~ivG~nGsGKTTLl~~l~g~l~~~~ 30 (171) T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERG 30 (171) T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTT T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCC T ss_conf 85999985999889999999971027799 No 100 >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Probab=88.98 E-value=0.23 Score=25.37 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=24.5 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 379999707886257899999997233000 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) .+-++++|..|.||||+...|...||-..+ T Consensus 4 ~k~Iil~G~~GsGKtTi~k~La~~l~~~~i 33 (175) T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175) T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEE T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEE T ss_conf 984999868999899999999999599979 No 101 >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Probab=88.87 E-value=0.28 Score=24.76 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=22.9 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 743379999707886257899999997233 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) .+.--.+-+.|+-++||||++++|..++-. T Consensus 309 i~~Ge~v~i~G~nGsGKsTLlk~l~G~~~p 338 (538) T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538) T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCC T ss_pred ECCCCEEEEECCCCCCCCHHHHHHHCCCCC T ss_conf 758988999747887431589998288789 No 102 >2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8} Probab=88.87 E-value=0.16 Score=26.38 Aligned_cols=18 Identities=44% Similarity=0.706 Sum_probs=6.3 Q ss_pred EEECCCCCHHHHHHHHHH Q ss_conf 970788625789999999 Q gi|254781225|r 506 IRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 506 ~~G~G~nGKSt~~~~l~~ 523 (789) +.|+-|+||||++++|.. T Consensus 38 iiG~nGaGKSTLlk~i~G 55 (266) T 2yz2_A 38 VAGNTGSGKSTLLQIVAG 55 (266) T ss_dssp EECSTTSSHHHHHHHHTT T ss_pred EECCCCCCHHHHHHHHHC T ss_conf 989999999999999965 No 103 >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Probab=88.78 E-value=0.27 Score=24.86 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=25.1 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 379999707886257899999997233000 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) .+.+++.|+.+.||||+.+.|..-++.... T Consensus 4 pr~Ivi~GpsGsGK~Tl~~~L~~~~~~~~~ 33 (198) T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFG 33 (198) T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEE T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEE T ss_conf 738999999999999999999985897706 No 104 >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Probab=88.66 E-value=0.23 Score=25.36 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=19.9 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 43379999707886257899999997233 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ....++.+.|+.++||||++++|..++-. T Consensus 26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p 54 (243) T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQP 54 (243) T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCC T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 59999999999987399999999678768 No 105 >2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Probab=88.64 E-value=0.37 Score=23.99 Aligned_cols=31 Identities=32% Similarity=0.398 Sum_probs=25.9 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 4337999970788625789999999723300 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) +...++++.|+-|+||||....|..-+|--. T Consensus 7 kk~~iI~i~G~pGSGKsT~a~~La~~~g~~~ 37 (196) T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTH 37 (196) T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEE T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 7786899989999987999999999879954 No 106 >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Probab=88.61 E-value=0.22 Score=25.43 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=8.5 Q ss_pred CCCEEECCCCCCCC-CCHHHH Q ss_conf 79379743888558-986550 Q gi|254781225|r 432 QDGILDLETGQKVK-PTKELY 451 (789) Q Consensus 432 ~NGv~dl~t~~~~~-~~~~~~ 451 (789) .+-|+-|+.|++.. .+|++. T Consensus 220 aDrI~vl~~G~I~~~Gtp~el 240 (390) T 3gd7_A 220 CDQFLVIEENKVRQYDSILEL 240 (390) T ss_dssp CSEEEEEETTEEEEESSHHHH T ss_pred CCEEEEEECCEEEEECCHHHH T ss_conf 999999989989998689999 No 107 >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Probab=88.49 E-value=0.29 Score=24.70 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=20.2 Q ss_pred EEEEEEECCCCCHHHHHHHHHHH Q ss_conf 79999707886257899999997 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYA 524 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~l 524 (789) ++++++|+-|+||||+.++|... T Consensus 2 kiI~l~G~~GSGKsTva~~L~~~ 24 (179) T 3lw7_A 2 KVILITGMPGSGKSEFAKLLKER 24 (179) T ss_dssp CEEEEECCTTSCHHHHHHHHHHT T ss_pred EEEEEECCCCCCHHHHHHHHHHC T ss_conf 79999899998899999999987 No 108 >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Probab=88.46 E-value=0.21 Score=25.62 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=18.0 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 3799997078862578999999972330 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) +.-+++.|.-++|||||+|.| +|.. T Consensus 37 ~~nIlVvG~tgsGKSTlIN~L---lg~~ 61 (361) T 2qag_A 37 EFTLMVVGESGLGKSTLINSL---FLTD 61 (361) T ss_dssp EECEEECCCTTSCHHHHHHHH---TTCC T ss_pred CEEEEEECCCCCCHHHHHHHH---HCCC T ss_conf 429999889979399999998---6887 No 109 >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A Probab=88.37 E-value=0.32 Score=24.41 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=25.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 9999999999999975987433799997078862578999999972 Q gi|254781225|r 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 480 ~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ++...|++.++-. .+-+++.|+.++|||||++.|...+ T Consensus 158 ~~~~~~l~~~v~~--------~~nilI~G~tgSGKTTll~al~~~i 195 (330) T 2pt7_A 158 EQAISAIKDGIAI--------GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330) T ss_dssp HHHHHHHHHHHHH--------TCCEEEEESTTSCHHHHHHHGGGGS T ss_pred HHHHHHHHHHHHH--------CCCEEEEEECCCCHHHHHHHHHHHC T ss_conf 9999999999982--------8958999607999899999997321 No 110 >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Probab=88.28 E-value=0.38 Score=23.87 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=24.9 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 4337999970788625789999999723300 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) +.-+++++.|+.+.||+|+.+.|...+.... T Consensus 4 ~~g~iivi~GpsGsGK~tl~~~L~~~~~~~~ 34 (207) T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSY 34 (207) T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCE T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCCCC T ss_conf 8872999999999999999999984597451 No 111 >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Probab=88.21 E-value=0.95 Score=21.26 Aligned_cols=46 Identities=17% Similarity=0.310 Sum_probs=32.5 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 99999999999999975987433799997078862578999999972330 Q gi|254781225|r 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 479 d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) -+|+.+.|.+ ..-........++++|-.++||||+.+.+...+-+. T Consensus 354 rpeV~~~L~~----~~ppr~~~~~~iw~tGlsgsGKtTia~~l~~~l~~~ 399 (546) T 2gks_A 354 RPEVAEILAE----TYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQAR 399 (546) T ss_dssp CHHHHHHHHH----HSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHH----HCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC T ss_conf 8899999998----552014773599984688980769999999998625 No 112 >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Probab=88.20 E-value=0.28 Score=24.76 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=49.2 Q ss_pred HHCC-CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECC Q ss_conf 9759-87433799997078862578999999972330003442676420124555568988997389809999346 Q gi|254781225|r 493 ALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 (789) Q Consensus 493 ~l~g-~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~ 567 (789) +|.+ .++.++++++.|+.++|||.+.--|..-++.. +.+.+..++- ++...|.+.|....+.+.+--.++-. T Consensus 31 ~~~~~~~~k~kvI~I~GpTasGKT~lAi~LA~~l~~e-IIsaDS~QvY--k~ldIgTaKpt~~e~~~vpHhLid~v 103 (339) T 3a8t_A 31 SLRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHFPLE-VINSDKMQVY--KGLDITTNKISVPDRGGVPHHLLGEV 103 (339) T ss_dssp -------CCCEEEEEECSTTSSHHHHHHHHHTTSCEE-EEECCSSTTB--SSCTTTTTCCCSGGGTTCCEESSSCB T ss_pred EEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCE-EEECCCHHHC--CCCCEEECCCCHHHHCCCCEEEEEEE T ss_conf 7443545788679998988428999999999987997-9952306426--99974889999999838997999899 No 113 >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Probab=88.20 E-value=0.24 Score=25.27 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.8 Q ss_pred CCCEEEECCC Q ss_conf 6843880477 Q gi|254781225|r 131 CGQYFVAYNI 140 (789) Q Consensus 131 ~G~q~V~~gs 140 (789) .|..+++-|. T Consensus 28 ~Ge~~~llGp 37 (362) T 2it1_A 28 DGEFMALLGP 37 (362) T ss_dssp TTCEEEEECC T ss_pred CCCEEEEECC T ss_conf 9989999999 No 114 >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Probab=88.19 E-value=0.25 Score=25.04 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.9 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 7999970788625789999999723300 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) .++++.|+-|.||||+.+.|...||... T Consensus 6 ~iI~i~G~sGsGKSTva~~La~~l~~~~ 33 (183) T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSF 33 (183) T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCE T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 0899999988349999999999839997 No 115 >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Probab=88.18 E-value=0.34 Score=24.17 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=22.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 99997078862578999999972330 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) -++++|+.|.||||+...|..-+|-. T Consensus 13 nI~i~G~pG~GKTTiak~La~~l~~~ 38 (180) T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLK 38 (180) T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCE T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC T ss_conf 57998999988899999999996998 No 116 >1sgw_A Putative ABC transporter; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.12 Probab=88.18 E-value=0.14 Score=26.68 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=20.3 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 379999707886257899999997233 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) -.++-+.|+-|+|||||+++|..++-. T Consensus 35 Gei~~liG~NGsGKSTLl~~l~g~~~p 61 (214) T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKP 61 (214) T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCC T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 979999999998399999999666678 No 117 >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* Probab=88.06 E-value=0.44 Score=23.49 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=23.3 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH Q ss_conf 999999999999759874337999970788625789999999 Q gi|254781225|r 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 482 ~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) ++.-+|..++-......-.---+++.|.-++|||||+|.|.. T Consensus 7 ~~~~l~d~l~~~g~~~~~~~P~IvVvG~~s~GKSsliNallg 48 (299) T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG 48 (299) T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHT T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHC T ss_conf 999999999964778888888799987999979999999968 No 118 >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Probab=87.96 E-value=0.17 Score=26.15 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=24.6 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 379999707886257899999997233000 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) -+++++.|+.++||||+.+.|..-..+... T Consensus 27 G~iivi~GPSGsGK~tl~~~L~~~~~~~~~ 56 (231) T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKNNIV 56 (231) T ss_dssp CCEEEEECSCC----CHHHHHHC----CEE T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEE T ss_conf 849999898998999999999962977767 No 119 >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* Probab=87.86 E-value=0.32 Score=24.37 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=23.9 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 74337999970788625789999999723300 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) .+.+.++.+-|.-|+||||+.+.|..-+++.. T Consensus 17 ~~~p~~I~IeG~~GsGKST~~~~L~~~l~~~~ 48 (230) T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDIC 48 (230) T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGGTTTEE T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCE T ss_conf 89863999889998768999999998658966 No 120 >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus VF5} Probab=87.75 E-value=0.37 Score=23.98 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.7 Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 99970788625789999999723300 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) +++.|..+.||||+...|..-||-.. T Consensus 3 I~l~G~~GsGKSTvg~~La~~Lg~~f 28 (168) T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPF 28 (168) T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCE T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 99989999988999999999959998 No 121 >2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Probab=87.68 E-value=0.43 Score=23.56 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=23.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 9999707886257899999997233000 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) .+++.|+.|+||||....|..-+|-..+ T Consensus 2 ~I~i~GppGSGKsT~a~~La~~~g~~~i 29 (206) T 2rgx_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206) T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEE T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEE T ss_conf 8999899999879999999999799168 No 122 >3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} Probab=87.68 E-value=0.29 Score=24.69 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=19.4 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 3799997078862578999999972330 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) +.=+++.|..+.|||||+|.| +|.. T Consensus 21 ~~rI~liG~tg~GKStl~N~l---~g~~ 45 (247) T 3lxw_A 21 TRRLILVGRTGAGKSATGNSI---LGQR 45 (247) T ss_dssp EEEEEEESSTTSSHHHHHHHH---HTSC T ss_pred CCEEEEECCCCCCHHHHHHHH---HCCC T ss_conf 878999999998299999999---6997 No 123 >3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13 Probab=87.61 E-value=0.22 Score=25.40 Aligned_cols=11 Identities=9% Similarity=0.036 Sum_probs=4.8 Q ss_pred CHHHHHHHHHH Q ss_conf 25789999999 Q gi|254781225|r 513 GKSTLMNLIKY 523 (789) Q Consensus 513 GKSt~~~~l~~ 523 (789) ....+.++++. T Consensus 279 ~~~~~~~~~r~ 289 (343) T 3dhw_C 279 DAPLLSETARR 289 (343) T ss_dssp SCCHHHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 75079999998 No 124 >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Probab=87.59 E-value=0.73 Score=22.00 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=28.8 Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 8879999999999999999759874337999970788625789999999723 Q gi|254781225|r 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 475 ~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) .++|-++.++.+.+.+- ...+++++|++|-|||+++.-+..-+. T Consensus 13 ~fvGRe~el~~L~~~l~--------~~~~v~i~G~~GiGKTsL~~~~~~~~~ 56 (350) T 2qen_A 13 DIFDREEESRKLEESLE--------NYPLTLLLGIRRVGKSSLLRAFLNERP 56 (350) T ss_dssp GSCSCHHHHHHHHHHHH--------HCSEEEEECCTTSSHHHHHHHHHHHSS T ss_pred CCCCHHHHHHHHHHHHH--------CCCEEEEECCCCCCHHHHHHHHHHHCC T ss_conf 47896999999999984--------599799984999978999999998567 No 125 >1ii8_A RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} SCOP: c.37.1.12 Probab=87.56 E-value=0.4 Score=23.71 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.0 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 379999707886257899999997233 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) .-+.+++|+-+.||||+++.|..+|+. T Consensus 23 ~gl~~i~G~NGsGKStil~Ai~~~L~g 49 (195) T 1ii8_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (195) T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT T ss_pred CCEEEEECCCCCCCCCHHHHHHHHCCC T ss_conf 980899888999820087746776048 No 126 >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Probab=87.54 E-value=0.22 Score=25.52 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=12.1 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 799997078862578999999972 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) .++.+.|+.|+|||||+++|..++ T Consensus 32 e~vaIvG~sGsGKSTLl~ll~gl~ 55 (237) T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237) T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS T ss_pred CEEEEECCCCCCHHHHHHHHHCCC T ss_conf 899999999998999999996567 No 127 >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* Probab=87.51 E-value=0.57 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.2 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 379999707886257899999997233 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ..++-+.|+.++|||||.+.|+.+|+. T Consensus 90 PfIIGIaG~sgSGKST~a~~L~~lL~~ 116 (312) T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312) T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 889998898987899999999999853 No 128 >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Probab=87.50 E-value=0.52 Score=23.01 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=24.6 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 433799997078862578999999972330 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) .-.+.+++.|+.+.||+|+++.|..-+.+. T Consensus 3 ~m~k~ivi~GpSG~GK~tl~~~L~~~~~~~ 32 (180) T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR 32 (180) T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC T ss_conf 887669999999899899999999729767 No 129 >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Probab=87.46 E-value=0.22 Score=25.41 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=13.6 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 799997078862578999999972 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) -++-+.|+-|.||||++++|..++ T Consensus 32 e~~~i~G~nGsGKSTLlk~i~Gl~ 55 (253) T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253) T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS T ss_pred CEEEEECCCCCCHHHHHHHHHCCC T ss_conf 899998899996999999995688 No 130 >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Probab=87.45 E-value=0.42 Score=23.59 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=24.1 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 433799997078862578999999972330 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) ..+.-+++.|+.|+||||....|..-+|=. T Consensus 6 ~~~m~I~i~GppGsGK~T~a~~la~~~~~~ 35 (230) T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKEKFGIP 35 (230) T ss_dssp ---CEEEEECCTTSCHHHHHHHHHHHHTCC T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCE T ss_conf 676079998999998799999999997993 No 131 >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Probab=87.36 E-value=0.45 Score=23.43 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=22.6 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 3379999707886257899999997233 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) .+-++++.|+.++||||+++.+...+.. T Consensus 24 ~~GlilisG~tGSGKTT~l~all~~i~~ 51 (261) T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261) T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC T ss_conf 8988999899996399999999984264 No 132 >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Probab=87.27 E-value=0.47 Score=23.30 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=20.6 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 99997078862578999999972330 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) .+.+.|+-|+||||+.++|..-||.. T Consensus 2 ~I~IeG~~GsGKST~~k~L~~~l~~~ 27 (205) T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYE 27 (205) T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCE T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC T ss_conf 89998889878999999999984996 No 133 >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Probab=87.25 E-value=0.42 Score=23.62 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=26.1 Q ss_pred HHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 9759874337999970788625789999999723300 Q gi|254781225|r 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 493 ~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) -|.+.... .-+++.|+-|+||||...+|..-+|-.. T Consensus 13 ~~~p~~~~-m~I~i~G~pGsGKsT~a~~Lak~l~~~~ 48 (201) T 2cdn_A 13 GLVPRGSH-MRVLLLGPPGAGKGTQAVKLAEKLGIPQ 48 (201) T ss_dssp ---CCCSC-CEEEEECCTTSSHHHHHHHHHHHHTCCE T ss_pred CCCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 78999997-4799989999998999999999979927 No 134 >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Probab=87.24 E-value=0.4 Score=23.75 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.6 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 799997078862578999999972330 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) +++++.|+-|+||||+.+.|...++.. T Consensus 4 ~iI~i~G~~GsGKTT~~~~L~~~l~~~ 30 (192) T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192) T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC T ss_conf 889998999959899999999998765 No 135 >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Probab=87.23 E-value=0.23 Score=25.33 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=14.6 Q ss_pred EEEEEECCCCCHHHHHHHHHHHH Q ss_conf 99997078862578999999972 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ++.+.|+-|.||||++++|..++ T Consensus 32 ~v~liGpNGaGKSTLlk~i~Gl~ 54 (263) T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263) T ss_dssp EEEEECCTTSSHHHHHHHHTTSS T ss_pred EEEEECCCCCHHHHHHHHHHCCC T ss_conf 99999899984999999996598 No 136 >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Probab=87.09 E-value=0.7 Score=22.12 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=14.6 Q ss_pred CCCCCCCCHHHHHHHHHHHCCC Q ss_conf 2216468999999999762001 Q gi|254781225|r 159 VEDTPLLSEEDVEYLFKFFQEI 180 (789) Q Consensus 159 ~~~~P~i~~~~~~~l~~~~~~~ 180 (789) ++++++++....+.+...+... T Consensus 207 LDel~~L~~~~~~~Ll~~Le~~ 228 (604) T 3k1j_A 207 IDEIATLSLKMQQSLLTAMQEK 228 (604) T ss_dssp ETTGGGSCHHHHHHHHHHHHHS T ss_pred EECHHHCCHHHHHHHHHHHHHC T ss_conf 8213333877899999999718 No 137 >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, cell cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Probab=87.02 E-value=0.31 Score=24.50 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=16.1 Q ss_pred EEEEEECCCCCHHHHHHHHH Q ss_conf 99997078862578999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789) -+++.|..+.|||||+|.|. T Consensus 20 nIlVvG~~g~GKSTliN~L~ 39 (301) T 2qnr_A 20 TLMVVGESGLGKSTLINSLF 39 (301) T ss_dssp EEEEEEETTSSHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHH T ss_conf 99998799791999999986 No 138 >2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* Probab=87.00 E-value=0.54 Score=22.86 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=21.8 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 37999970788625789999999723 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) .+|+.+-|+-|+||||.++.|..-|. T Consensus 2 ~~fI~ieG~dGsGKsT~~~~L~~~L~ 27 (205) T 2ccj_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205) T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 96899989988709999999999996 No 139 >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Probab=86.85 E-value=0.6 Score=22.59 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=14.9 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 37999970788625789999999723 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) +..+++.|+-++|||||++-|..-++ T Consensus 14 ~~vi~v~G~~GaGKTTLl~~Ll~~~~ 39 (262) T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262) T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHH T ss_conf 88899991899809999999999873 No 140 >3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A Probab=86.82 E-value=0.43 Score=23.50 Aligned_cols=28 Identities=36% Similarity=0.576 Sum_probs=22.9 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 7999970788625789999999723300 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) +.+++.|+.|.||||+++.|..-+.... T Consensus 2 r~Ivl~GpsGsGK~Tl~~~L~~~~~~~~ 29 (186) T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186) T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCE T ss_conf 7799989999998999999997488775 No 141 >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Probab=86.78 E-value=0.27 Score=24.90 Aligned_cols=11 Identities=45% Similarity=0.963 Sum_probs=3.4 Q ss_pred ECCCCCHHHHH Q ss_conf 07886257899 Q gi|254781225|r 508 GVGGSGKSTLM 518 (789) Q Consensus 508 G~G~nGKSt~~ 518 (789) |+-|.||||++ T Consensus 71 G~sGsGKSTLl 81 (290) T 2bbs_A 71 GSTGAGKTSLL 81 (290) T ss_dssp ESTTSSHHHHH T ss_pred CCCCCHHHHHH T ss_conf 99997599999 No 142 >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Probab=86.78 E-value=0.19 Score=25.82 Aligned_cols=19 Identities=37% Similarity=0.614 Sum_probs=6.7 Q ss_pred EEEECCCCCHHHHHHHHHH Q ss_conf 9970788625789999999 Q gi|254781225|r 505 HIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 505 ~~~G~G~nGKSt~~~~l~~ 523 (789) .+.|+-|+||||++++|.. T Consensus 84 aIvG~sGsGKSTLl~ll~g 102 (306) T 3nh6_A 84 ALVGPSGAGKSTILRLLFR 102 (306) T ss_dssp EEESSSCHHHHHHHHHHTT T ss_pred EEECCCCCHHHHHHHHHHC T ss_conf 9999999869999999965 No 143 >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Probab=86.75 E-value=0.83 Score=21.65 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=11.3 Q ss_pred EEEEEECCCCCHHHHHHHHHHHH Q ss_conf 99997078862578999999972 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~ll 525 (789) +.++.|++|+||||++..|..++ T Consensus 206 ~~~i~G~aGTGKTt~l~~i~~~~ 228 (574) T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLA 228 (574) T ss_dssp EEEEECCTTSCHHHHHHHHHHHH T ss_pred EEEEECCCCCHHHHHHHHHHHHH T ss_conf 89998998600999999999999 No 144 >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Probab=86.72 E-value=0.57 Score=22.74 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=23.6 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 37999970788625789999999723300 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) ++.+++.|+.+.||||+++.|..-+.+.. T Consensus 19 ~r~Ivl~GpSG~GK~tl~~~L~~~~~~~~ 47 (197) T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKF 47 (197) T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTE T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCE T ss_conf 96799999899999999999997296566 No 145 >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Probab=86.66 E-value=0.43 Score=23.56 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=34.9 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC--CHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCC Q ss_conf 43379999707886257899999997233000344--267642012455556898899738980999934677 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA--EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~--~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~ 569 (789) ..+.+++++|+.++|||-++..+..-+........ +.... ..+..+....++++.+.+. T Consensus 34 ~~~~~l~L~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~d~l~iDDi~~ 94 (149) T 2kjq_A 34 KHGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM------------PLTDAAFEAEYLAVDQVEK 94 (149) T ss_dssp CCCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS------------CCCGGGGGCSEEEEESTTC T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHH------------HHHHHHHCCCCHHHHHHHH T ss_conf 788859998999998899999999999808991899735453------------2588876024134456887 No 146 >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Probab=86.57 E-value=0.87 Score=21.50 Aligned_cols=134 Identities=10% Similarity=0.048 Sum_probs=70.0 Q ss_pred HHHHHHHH---CCCHHHHHHHHHHHHHHHCCCC---CCCEEEEEEECCCCCHHHHHHHHHHHHCC--CCC-CCCCHHHHH Q ss_conf 99999888---7999999999999999975987---43379999707886257899999997233--000-344267642 Q gi|254781225|r 469 FLDLVSGY---FESEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAFGN--QYV-INAEASDIM 539 (789) Q Consensus 469 ~~~~l~~~---~~d~e~~~~l~~~~g~~l~g~~---~~~~~~~~~G~G~nGKSt~~~~l~~llG~--~~~-~~~~~~~~~ 539 (789) +..+...+ +|-+. +.+.+-..|.|.+ +...-+.+.|.-+.|||.|++.+..+... |.. ...+..-++ T Consensus 205 ~~~l~~siaPI~G~e~----vK~ailL~L~gg~~k~rg~ihiLLvGDPGtgKSqLlk~v~~laPR~v~tsG~~sS~aGLT 280 (506) T 3f8t_A 205 LTTFARAIAPLPGAEE----VGKMLALQLFSCVGKNSERLHVLLAGYPVVCSEILHHVLDHLAPRGVYVDLRRTELTDLT 280 (506) T ss_dssp HHHHHHHHCCSTTCHH----HHHHHHHHHTTCCSSGGGCCCEEEESCHHHHHHHHHHHHHHTCSSEEEEEGGGCCHHHHS T ss_pred HHHHHHHHCCCCCCHH----HHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC T ss_conf 9999997587668778----999999984189777778536999789964687999999874862111355445345662 Q ss_pred HC-CCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCC-EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCC Q ss_conf 01-24555568988997389809999346777601310-0245415985873210478606871452899973886 Q gi|254781225|r 540 QN-RPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 (789) Q Consensus 540 ~~-~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~-~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~ 613 (789) .. .......-.+....|...-.+.++|.++-....-+ +.-.|.. ..|+..+ .+..-.+.++.++|-. T Consensus 281 a~v~~d~~~~leaGaLvLAd~GI~cIDE~dkm~~~d~saL~EAMEq-qtVsIak------~tl~aR~sVlAAaNP~ 349 (506) T 3f8t_A 281 AVLKEDRGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDK-GTVTVDG------IALNARCAVLAAINPG 349 (506) T ss_dssp EEEEESSSEEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHH-SEEEETT------EEEECCCEEEEEECCC T ss_pred EEEECCCCCEEECCEEECCCCCEEEEECHHHCCHHHHHHHHHHHHC-CEEEEEE------EECCCCCEEEEEECCC T ss_conf 1452167630326703316788689801464498899999999872-9278745------4025651368886664 No 147 >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Probab=86.49 E-value=0.39 Score=23.81 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=19.7 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 379999707886257899999997233 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) +.=+++.|..+.|||||+|.| +|. T Consensus 22 e~~I~l~G~tg~GKSsl~N~l---~g~ 45 (260) T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSI---LRK 45 (260) T ss_dssp CEEEEEEECTTSCHHHHHHHH---HTS T ss_pred CCEEEEECCCCCCHHHHHHHH---HCC T ss_conf 838999918998399999999---799 No 148 >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Probab=86.46 E-value=0.27 Score=24.87 Aligned_cols=16 Identities=38% Similarity=0.810 Sum_probs=5.5 Q ss_pred EEECCCCCHHHHHHHH Q ss_conf 9707886257899999 Q gi|254781225|r 506 IRGVGGSGKSTLMNLI 521 (789) Q Consensus 506 ~~G~G~nGKSt~~~~l 521 (789) +.|+-+.||||++++| T Consensus 39 ivG~sGsGKSTLl~ll 54 (229) T 2pze_A 39 VAGSTGAGKTSLLMMI 54 (229) T ss_dssp EECCTTSSHHHHHHHH T ss_pred EECCCCCHHHHHHHHH T ss_conf 9999988399999999 No 149 >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Probab=86.36 E-value=0.72 Score=22.06 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=37.9 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC--CCCCCHH-HHHHCC-CCCCCCCCHHHHHHCCCEEEEEECCC Q ss_conf 37999970788625789999999723300--0344267-642012-45555689889973898099993467 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY--VINAEAS-DIMQNR-PPEAGKANPSLIRLMGSRIVIISETN 568 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~--~~~~~~~-~~~~~~-~~~~~~~~~~la~l~g~r~~~~~E~~ 568 (789) .+=++++|+.|+|||.++..|.+-+-... +.-.+.. ++..-+ ....+....-+-.+...-+++++|.. T Consensus 54 ~~gl~l~G~~GtGKT~La~ai~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~d~LiiDdlg 125 (202) T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLG 125 (202) T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHSSEEEEEEEC T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEECCHH T ss_conf 874899899989789999999999753488289974566899999998611044321355147733761121 No 150 >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Probab=86.34 E-value=0.64 Score=22.39 Aligned_cols=30 Identities=37% Similarity=0.473 Sum_probs=24.0 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 433799997078862578999999972330 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) +.-+|+.+.|.-|+||||+.+.|...|... T Consensus 8 ~kg~~I~ieG~dGsGKtT~~~~L~e~L~~~ 37 (212) T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212) T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHT T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC T ss_conf 688599998998889999999999999877 No 151 >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Probab=86.29 E-value=0.62 Score=22.49 Aligned_cols=29 Identities=41% Similarity=0.551 Sum_probs=22.8 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 874337999970788625789999999723 Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) ..+....+-++|.-|+||||+.+.++. +| T Consensus 4 ~~k~P~iIgItG~~GSGKsTva~~l~~-~g 32 (203) T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRS-WG 32 (203) T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHH-TT T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH-CC T ss_conf 888848999989987769999999998-79 No 152 >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Probab=86.21 E-value=0.55 Score=22.82 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=21.4 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 79999707886257899999997233 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) +|+.+-|.-|+||||+.+.|...|.. T Consensus 4 ~~I~ieG~dGsGKsT~~~~L~~~L~~ 29 (213) T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ 29 (213) T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 18998899998899999999999997 No 153 >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Probab=86.15 E-value=0.55 Score=22.82 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.1 Q ss_pred EEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 999707886257899999997233 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) +++.|+.++||||+...|..-+|= T Consensus 3 I~i~GpPGSGK~T~a~~La~~~~~ 26 (214) T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGI 26 (214) T ss_dssp EEEEESTTSSHHHHHHHHHHHHCC T ss_pred EEEECCCCCCHHHHHHHHHHHHCC T ss_conf 999899999879999999999798 No 154 >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* Probab=86.10 E-value=0.41 Score=23.69 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=5.6 Q ss_pred EEECCCCCHHHHHHH Q ss_conf 970788625789999 Q gi|254781225|r 506 IRGVGGSGKSTLMNL 520 (789) Q Consensus 506 ~~G~G~nGKSt~~~~ 520 (789) +.|.-++|||||+|. T Consensus 31 VvG~~ssGKSTlINa 45 (341) T 2x2e_A 31 VVGGQSAGKSSVLEN 45 (341) T ss_dssp EECBTTSSHHHHHHT T ss_pred EECCCCCCHHHHHHH T ss_conf 984899979999999 No 155 >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} SCOP: c.37.1.1 Probab=86.08 E-value=0.58 Score=22.68 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=26.5 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC Q ss_conf 379999707886257899999997233000344 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~ 533 (789) ...+++.|+-|.||||+.+.|..-++.+..... T Consensus 10 g~~Ivi~G~~GsGKTTiak~La~~l~~~~~~~~ 42 (184) T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184) T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCEECH T ss_conf 976999879999889999999998689955324 No 156 >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str} Probab=85.82 E-value=0.66 Score=22.29 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=22.5 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 379999707886257899999997233 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) -+|+.+-|+-|+||||+.++|...+.. T Consensus 4 g~~I~ieG~dGsGKsT~~~~L~~~l~~ 30 (213) T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213) T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 718999899887299999999999971 No 157 >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Probab=85.79 E-value=0.33 Score=24.32 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=24.0 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 433799997078862578999999972330 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) .......++|+-|.||||++++|..++-.+ T Consensus 367 ~~g~~i~ivG~sGsGKSTLl~lL~g~~~p~ 396 (582) T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVD 396 (582) T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCC T ss_conf 899889997799856889999761787899 No 158 >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Probab=85.77 E-value=0.59 Score=22.63 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=22.6 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 999970788625789999999723300 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) -+++.|+.|+||||....|..-+|-.. T Consensus 7 ~I~i~GppGSGKsT~a~~La~~~~~~~ 33 (222) T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQLAH 33 (222) T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCCEE T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEE T ss_conf 899989999987999999999979978 No 159 >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* Probab=85.69 E-value=0.59 Score=22.64 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=22.7 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 379999707886257899999997233 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) .-+.+++|+-+.||||+++.|..+|.. T Consensus 23 ~~~~vi~G~Ng~GKStil~Ai~~~l~~ 49 (149) T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (149) T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHC T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHC T ss_conf 983999999999743799999998607 No 160 >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Probab=85.63 E-value=0.47 Score=23.26 Aligned_cols=25 Identities=40% Similarity=0.474 Sum_probs=19.9 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 3799997078862578999999972330 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) +.=++++|..+.||||++|.| +|.. T Consensus 29 ~lrI~liG~~g~GKSSl~N~L---~g~~ 53 (239) T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSI---LGRK 53 (239) T ss_dssp EEEEEEECCTTSSHHHHHHHH---HTSC T ss_pred CCEEEEECCCCCCHHHHHHHH---HCCC T ss_conf 748999899998399999999---5998 No 161 >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Probab=85.51 E-value=0.58 Score=22.66 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=27.8 Q ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHH---HEEECCCCEECHHHHHH Q ss_conf 87889999999999842638888754---32626884111799999 Q gi|254781225|r 674 DIPEVCLKAKEEERQGTDTYQAWIDD---CCDIGENLWEESHSLAK 716 (789) Q Consensus 674 ~~p~~v~~a~~~y~~~~D~v~~fi~e---~ce~~~~~~~~~~~l~~ 716 (789) ..++.++.-.+.|+.+..++..|..+ +.+++.+ .+..++++ T Consensus 179 d~~e~i~kRl~~y~~~~~pl~~~y~~~~~~~~Id~~--~sideV~~ 222 (233) T 1ak2_A 179 DNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDAS--QTPDVVFA 222 (233) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETT--SCHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC--CCHHHHHH T ss_conf 879999999999999999999999966988999899--99999999 No 162 >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* Probab=85.51 E-value=0.5 Score=23.11 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=21.2 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 433799997078862578999999972 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ..-.++-+.|+-|+|||||+++|..+. T Consensus 24 ~~Gei~~iiGpNGaGKSTLl~~l~Gl~ 50 (249) T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249) T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC T ss_conf 589899999899981999999994787 No 163 >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Probab=85.43 E-value=0.66 Score=22.28 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=15.1 Q ss_pred HHHHHHCCCCC----CCCHHHHHHHHHHHH Q ss_conf 99999878898----878899999999998 Q gi|254781225|r 663 VKAYISKGLDV----DIPEVCLKAKEEERQ 688 (789) Q Consensus 663 ~~~~~~~g~~~----~~p~~v~~a~~~y~~ 688 (789) ++..+++|..+ ..|+++....+-|+. T Consensus 591 lR~~L~~G~~pP~~f~rpeVa~iL~~~y~~ 620 (630) T 1x6v_B 591 MRKLAREGQKPPEGFMAPKAWTVLTEYYKS 620 (630) T ss_dssp HHHHHHTTCCCCTTSSCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 999997859999550878999999999987 No 164 >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* Probab=85.43 E-value=0.82 Score=21.66 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=23.6 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 4337999970788625789999999723 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) ....+++++|..|+||||+.+.|...|. T Consensus 23 ~kg~vIwltGlsGSGKTTiA~~L~~~L~ 50 (211) T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211) T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 9987999989999988999999999999 No 165 >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Probab=85.20 E-value=0.76 Score=21.90 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 9999999999997598-7433799997078862578999999972330 Q gi|254781225|r 482 VMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 482 ~~~~l~~~~g~~l~g~-~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) ++.-+.+++...-.|. .++..-+.+.|..+.|||||+|.| +|.. T Consensus 213 i~~~l~~ll~~~~~g~~l~~G~~VaIvG~PNvGKSSL~N~L---~g~~ 257 (476) T 3gee_A 213 LRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTL---LGQE 257 (476) T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHHHHC---C--- T ss_pred HHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCCHHHHHHHH---HCCC T ss_conf 99999999987751345325977999899884277999998---3766 No 166 >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Probab=85.12 E-value=0.35 Score=24.15 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=10.1 Q ss_pred EEEEEECCCCCHHHHHHHHHHHH Q ss_conf 99997078862578999999972 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ++-+.|+-++||||++++|..++ T Consensus 34 i~~liGpNGaGKSTll~~i~Gl~ 56 (240) T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240) T ss_dssp EEEEECSTTSSHHHHHHHHTTSS T ss_pred EEEEECCCCCCHHHHHHHHHCCC T ss_conf 99999999984999999997797 No 167 >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Probab=85.12 E-value=0.81 Score=21.70 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=48.8 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCC Q ss_conf 799997078862578999999972330003442676420124555568988997389809999346777601310 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~ 576 (789) +++++.|+.++|||-+.--|..-+|.. +.+.+..++-+ +...+.+.|....+.+..--.++..+..+..+.+ T Consensus 2 ~l~~I~GpTasGKS~lAi~LA~~~~~e-IIs~DS~QvY~--~l~IgTakp~~~e~~~v~H~li~~~~~~~~~s~~ 73 (253) T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWP-VVALDRVQCCP--QIATGSGRPLESELQSTRRIYLDSRPLTEGILDA 73 (253) T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCC-EEECCSGGGCG--GGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCH T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCE-EEECCHHHHCC--CCCEEECCCCHHHHCHHCEEEECCCCCCCCCCHH T ss_conf 699997987527899999999986994-99613474259--9986778999789630020101355866356699 No 168 >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Probab=85.11 E-value=0.31 Score=24.44 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.8 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 9999707886257899999997233000 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) .+-+.|+.|+||||+.+.|..+|+...+ T Consensus 7 IIgItG~SGSGKTTva~~L~~il~~~~v 34 (290) T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGV 34 (290) T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTC T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC T ss_conf 8999899978099999999998534699 No 169 >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Probab=85.08 E-value=0.52 Score=22.96 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=18.5 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 337999970788625789999999723 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) .+-++++.|+.++||||++..+..-+- T Consensus 166 ~~GlilisGpTGSGKSTTl~a~l~~i~ 192 (418) T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418) T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC T ss_conf 897799967998864178999987750 No 170 >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5} Probab=84.98 E-value=0.7 Score=22.12 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=19.0 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 999970788625789999999723 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG 526 (789) |+.+.|.-|+||||+.+.|..-|. T Consensus 2 ~I~ieG~~GsGKsT~~~~L~~~L~ 25 (195) T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195) T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHH T ss_conf 899988998989999999999998 No 171 >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Probab=84.97 E-value=0.44 Score=23.47 Aligned_cols=31 Identities=32% Similarity=0.434 Sum_probs=24.5 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 4337999970788625789999999723300 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) +....+.++|+-|.||||++++|..++-.+. T Consensus 367 ~~G~~~~ivG~sGsGKSTLlkll~g~~~p~~ 397 (582) T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDE 397 (582) T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCSE T ss_pred CCCCEEEEECCCCCCHHHHHHHHCCCCCCCC T ss_conf 6998999989999849999999807874898 No 172 >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Probab=84.93 E-value=0.65 Score=22.36 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=28.5 Q ss_pred CCCHHHHHHHHHHHHHCCHHHHHHHH---HEEECCCCEECHHHHHH Q ss_conf 87889999999999842638888754---32626884111799999 Q gi|254781225|r 674 DIPEVCLKAKEEERQGTDTYQAWIDD---CCDIGENLWEESHSLAK 716 (789) Q Consensus 674 ~~p~~v~~a~~~y~~~~D~v~~fi~e---~ce~~~~~~~~~~~l~~ 716 (789) ..++.++.-.+.|++...+|..|.++ +.+++.+. +..++++ T Consensus 168 D~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~Id~~~--~~~eV~~ 211 (220) T 1aky_A 168 DNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQ--PPATVWA 211 (220) T ss_dssp CSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTS--CHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CHHHHHH T ss_conf 9899999999999999999999998579889998999--9999999 No 173 >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Probab=84.87 E-value=0.71 Score=22.11 Aligned_cols=28 Identities=32% Similarity=0.598 Sum_probs=21.9 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 3379999707886257899999997233 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ..+|+.+-|.-|+||||+++.|..-|.. T Consensus 26 ~~kfIvieG~dGsGKSTq~~~L~~~L~~ 53 (236) T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236) T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 7898999899988499999999999996 No 174 >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP PSI; HET: 5GP POP; 1.80A {Plasmodium vivax} Probab=84.86 E-value=0.59 Score=22.62 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=22.9 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 999970788625789999999723300 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) .+++.|+.|.||+|+++.|...+.+.. T Consensus 14 ~Ivl~GpsGsGK~tl~~~L~~~~~~~~ 40 (204) T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFPSRF 40 (204) T ss_dssp CEEEECCTTSCHHHHHHHHHHHCTTTE T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCE T ss_conf 189999999999999999997387775 No 175 >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Probab=84.80 E-value=0.67 Score=22.27 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=21.9 Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 99970788625789999999723300 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) +++.|+.|+||||....|..-+|=.. T Consensus 3 I~i~GpPGsGK~T~a~~la~~~~~~~ 28 (216) T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPH 28 (216) T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCE T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEE T ss_conf 99989999987999999999979937 No 176 >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Probab=84.66 E-value=0.65 Score=22.35 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=24.3 Q ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 999975987433799997078862578999999 Q gi|254781225|r 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 490 ~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) +...|.+....+.=+++.|.++.|||+|++-+. T Consensus 10 ~~s~~~~~~~ke~KI~lvG~~~vGKTsLi~~l~ 42 (181) T 2h17_A 10 HSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFS 42 (181) T ss_dssp -----------CEEEEEEEETTSSHHHHHHHHH T ss_pred CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH T ss_conf 787877799951799999999999899999997 No 177 >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Probab=84.58 E-value=0.55 Score=22.83 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=24.8 Q ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH Q ss_conf 9999997598743379999707886257899999 Q gi|254781225|r 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 488 ~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l 521 (789) -.....|.+..+.+.=+++.|..+.|||||++-+ T Consensus 8 ~~~~~~~~p~g~k~~kI~ivG~~nvGKSSLin~l 41 (190) T 2h57_A 8 HHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKL 41 (190) T ss_dssp -------------CEEEEEEECTTSSHHHHHHHT T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHH T ss_conf 4347787779995579999999999899999999 No 178 >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Probab=84.42 E-value=0.6 Score=22.58 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=32.1 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 79999999999999999759874337999970788625789999999723 Q gi|254781225|r 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 477 ~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) +|-++-++-+..++..++.+... ..++++|+.|.|||++++.+..-+. T Consensus 22 ~gRe~e~~~l~~~l~~~~~~~~~--~~lli~GppGtGKT~l~~~l~~~l~ 69 (387) T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKP--SNALLYGLTGTGKTAVARLVLRRLE 69 (387) T ss_dssp TTCHHHHHHHHHTTGGGTSSCCC--CCEEECBCTTSSHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHCCCC--CCEEEECCCCCCHHHHHHHHHHHHH T ss_conf 98299999999999999728999--8369987998809999999999976 No 179 >2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A* Probab=84.30 E-value=0.94 Score=21.27 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=5.9 Q ss_pred HHHHHHHHHHCCC Q ss_conf 8999999972330 Q gi|254781225|r 516 TLMNLIKYAFGNQ 528 (789) Q Consensus 516 t~~~~l~~llG~~ 528 (789) -|.++-..++|++ T Consensus 326 ~L~~l~~~l~~~~ 338 (354) T 2woj_A 326 NLTKFSQFLNKEY 338 (354) T ss_dssp HHHHHHHHHHTTC T ss_pred HHHHHHHHHCCCC T ss_conf 9999999870888 No 180 >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Probab=84.29 E-value=0.72 Score=22.04 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=27.8 Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHH---HEEECCCCEECHHHHHHHH Q ss_conf 7889999999999842638888754---3262688411179999999 Q gi|254781225|r 675 IPEVCLKAKEEERQGTDTYQAWIDD---CCDIGENLWEESHSLAKSY 718 (789) Q Consensus 675 ~p~~v~~a~~~y~~~~D~v~~fi~e---~ce~~~~~~~~~~~l~~~y 718 (789) .++.+..-.+.|.....+|..|..+ +.+++.+ ...++++.- T Consensus 165 ~~e~i~~R~~~y~~~t~pv~~~Y~~~~~~~~Idg~---~~~eV~~~I 208 (227) T 1zd8_A 165 KPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT---ETNKIWPYV 208 (227) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS---SHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC---CHHHHHHHH T ss_conf 89999999999999888999999955978997898---868999999 No 181 >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Probab=84.26 E-value=1.2 Score=20.49 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=16.9 Q ss_pred EEEEEECCCCCHHHHHHHHHH Q ss_conf 999970788625789999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~ 523 (789) -+++.|..+.|||+|++.+.. T Consensus 50 ~V~ivG~~n~GKTSLl~~l~~ 70 (193) T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTT 70 (193) T ss_dssp EEEEECCTTSSHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHC T ss_conf 899999999998999999956 No 182 >2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20 Probab=84.25 E-value=0.86 Score=21.53 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=27.6 Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 88799999999999999997598743379999707886257899999997233 Q gi|254781225|r 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 475 ~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) +++|-++.++.++... +.+++++|++|.|||++++-+..-++. T Consensus 14 ~f~GRe~El~~L~~~~----------~~~vli~G~~GiGKTsLl~~~~~~~~~ 56 (357) T 2fna_A 14 DFFDREKEIEKLKGLR----------APITLVLGLRRTGKSSIIKIGINELNL 56 (357) T ss_dssp GSCCCHHHHHHHHHTC----------SSEEEEEESTTSSHHHHHHHHHHHHTC T ss_pred CCCCHHHHHHHHHHHC----------CCEEEEECCCCCCHHHHHHHHHHHCCC T ss_conf 2889799999999848----------997999839999899999999997699 No 183 >1ka8_A Putative P4-specific DNA primase; winged helix, transferase; 2.95A {Enterobacteria phage P4} SCOP: a.4.5.20 Probab=83.98 E-value=1.5 Score=19.86 Aligned_cols=80 Identities=21% Similarity=0.154 Sum_probs=47.0 Q ss_pred HCCHHHHHHHHHEEECC-----------CCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEC Q ss_conf 42638888754326268-----------8411179999999999985046675554525689999863542333100102 Q gi|254781225|r 689 GTDTYQAWIDDCCDIGE-----------NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757 (789) Q Consensus 689 ~~D~v~~fi~e~ce~~~-----------~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~ 757 (789) ++|++-.|..--..... ....+...||.||-.||+.++- .++++-+.|+..|.+.--.-|++-. + T Consensus 1 ~sDpL~dFc~yl~~~~~~~GL~mGnani~p~~pR~yLYhAYLaymea~g~--~~pl~l~~Fg~~l~~alkE~g~~y~--k 76 (100) T 1ka8_A 1 DADPTFDFIGYLETLPQTSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE--K 76 (100) T ss_dssp CCCHHHHHGGGEEECSSSCSCBCCCTTCCSCCTTTBHHHHHHHHHHHTTC--SCCCCHHHHHHHHHHHHHHTTCCCC--E T ss_pred CCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHH--E T ss_conf 98608889999881677775065367788886388889999999998299--8985187889988999999876561--2 Q ss_pred CCCCCCCEEEEEEECC Q ss_conf 5676520899798656 Q gi|254781225|r 758 KEWKSKRIIKGLKLKP 773 (789) Q Consensus 758 ~~~~~~r~~~Gi~Lk~ 773 (789) ++.+ +.+..-|.|+. T Consensus 77 r~tk-~g~~tNv~l~d 91 (100) T 1ka8_A 77 RHTK-QGIQTNLTLKE 91 (100) T ss_dssp EEET-TEEEESEEECT T ss_pred EECC-CCEEEEEEECC T ss_conf 3127-96897567534 No 184 >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Probab=83.97 E-value=0.83 Score=21.65 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=21.5 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 33799997078862578999999972 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) .+-++++.|+.++||||++..+...+ T Consensus 122 ~~GliLvtGpTGSGKTTtl~all~~~ 147 (356) T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356) T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH T ss_conf 79779998999998579999998743 No 185 >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Probab=83.92 E-value=1.5 Score=19.85 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=40.7 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHH-CCC--CCCCCCHHHHHHC-C-CCCCCCCCHHHHHHCCCEEEEEECCCC Q ss_conf 33799997078862578999999972-330--0034426764201-2-455556898899738980999934677 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAF-GNQ--YVINAEASDIMQN-R-PPEAGKANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~ll-G~~--~~~~~~~~~~~~~-~-~~~~~~~~~~la~l~g~r~~~~~E~~~ 569 (789) ...-++++|+.|.|||.++..+.+-+ ..+ .+...+...+... . ....+....-+..+....+++++|... T Consensus 37 ~~~~l~l~G~~GtGKT~La~ai~~~l~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lLiiDd~g~ 111 (180) T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGS 111 (180) T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSS T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCC T ss_conf 597699999999988999999999988605963677514417888878873150899998617511999982135 No 186 >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} Probab=83.79 E-value=0.78 Score=21.83 Aligned_cols=25 Identities=44% Similarity=0.504 Sum_probs=21.9 Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 9997078862578999999972330 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) +++.|+.++||||....|..-+|=. T Consensus 3 Ivi~GpPGSGK~Tqa~~La~~~g~~ 27 (223) T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLA 27 (223) T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCE T ss_pred EEEECCCCCCHHHHHHHHHHHHCCE T ss_conf 9998899998799999999997985 No 187 >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Probab=83.71 E-value=0.69 Score=22.19 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=7.5 Q ss_pred HHHHHHHHHHHHC Q ss_conf 5789999999723 Q gi|254781225|r 514 KSTLMNLIKYAFG 526 (789) Q Consensus 514 KSt~~~~l~~llG 526 (789) |..+++.+..++. T Consensus 382 ~~~~i~~vd~~l~ 394 (550) T 2qpt_A 382 KPKLLEALDDMLA 394 (550) T ss_dssp CHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 7999999999864 No 188 >1z6g_A Guanylate kinase; structural genomics, SGC, structural genomics consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum 3D7} Probab=83.69 E-value=0.87 Score=21.51 Aligned_cols=26 Identities=35% Similarity=0.554 Sum_probs=22.0 Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 99970788625789999999723300 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) +++.|+.+.||+|+++.|..-+.+.. T Consensus 26 IVl~GPSGsGK~tL~~~L~~~~p~~~ 51 (218) T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEFPNYF 51 (218) T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTTE T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCE T ss_conf 99999999999999999997198776 No 189 >2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10 Probab=83.63 E-value=1.6 Score=19.77 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 999999999999975987433799997078862578999999972 Q gi|254781225|r 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 481 e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) +..+..++.+..++- .+..-.-+=++|+.+.|||||++-+...+ T Consensus 37 ~~~~~~~~ll~~~~~-~~~~~~~IgItG~PGaGKSTLi~~L~~~~ 80 (341) T 2p67_A 37 RHQALSTQLLDAIMP-YCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341) T ss_dssp HHHHHHHHHHHHHGG-GCSCSEEEEEEECTTSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 318999999998752-26985289732899998999999999998 No 190 >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Probab=83.47 E-value=0.65 Score=22.32 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=5.0 Q ss_pred EEEEECCCCCHHHHH Q ss_conf 999707886257899 Q gi|254781225|r 504 IHIRGVGGSGKSTLM 518 (789) Q Consensus 504 ~~~~G~G~nGKSt~~ 518 (789) +++.|+.++|||-+. T Consensus 13 i~I~GpTasGKs~La 27 (316) T 3foz_A 13 IFLMGPTASGKTALA 27 (316) T ss_dssp EEEECCTTSCHHHHH T ss_pred EEEECCCCCCHHHHH T ss_conf 999898832799999 No 191 >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Probab=83.39 E-value=0.76 Score=21.88 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=23.0 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 379999707886257899999997233 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) -+++++.|+.+.||||+.+.|..-... T Consensus 16 G~livi~GPSG~GK~tL~~~L~~~~p~ 42 (219) T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219) T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCT T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC T ss_conf 838999999999999999999863986 No 192 >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A* Probab=83.34 E-value=0.93 Score=21.32 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=21.8 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 337999970788625789999999723 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) ..-++++.|+.++||||++..+...+. T Consensus 135 ~~Glilv~GpTGSGKTTtl~a~l~~~~ 161 (372) T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372) T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 697599987999748999999999841 No 193 >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Probab=83.31 E-value=1.4 Score=20.08 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=39.1 Q ss_pred HHHHHHHHHHH-C-CC----HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 47899999888-7-99----999999999999997598743379999707886257899999997233 Q gi|254781225|r 466 SQEFLDLVSGY-F-ES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 466 ~p~~~~~l~~~-~-~d----~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ...+.+.|..= . |. +|+.+.|++ ..-+..+.-..++++|-.++||||+.+.|..-|-. T Consensus 359 gt~iR~~L~~G~~~P~~f~rpeV~~~L~~----~~~p~~~~g~~iw~tGLsGsGKTTia~~l~~~L~~ 422 (573) T 1m8p_A 359 GTELRRRLRSGAHIPEWFSYPEVVKILRE----SNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573) T ss_dssp HHHHHHHHHHTCCCCTTTSCHHHHHHHHT----TSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCHHHCCHHHHHHHHH----HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 78999999779999947644778999998----62221478559999578998775999999999997 No 194 >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Probab=83.09 E-value=0.63 Score=22.44 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=29.1 Q ss_pred CCCCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---HCCCC Q ss_conf 6884111799999999999850466755545256899998---63542 Q gi|254781225|r 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK---QKGFI 748 (789) Q Consensus 704 ~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~---~~g~~ 748 (789) .........++++.|..+|+..+ ..+++.+.|...+. ..|+. T Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~glI 345 (386) T 2qby_A 301 EENVVSTTGAVYETYLNICKKLG---VEAVTQRRVSDIINELDMVGIL 345 (386) T ss_dssp ----CEEHHHHHHHHHHHHHHHT---CCCCCHHHHHHHHHHHHHHTSE T ss_pred CCCCCCCHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHCCCC T ss_conf 34788769999999999999809---9988899999999999977982 No 195 >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB: 2qm7_A* Probab=83.01 E-value=1.7 Score=19.61 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=27.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 999999999999975987433799997078862578999999972 Q gi|254781225|r 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 481 e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) +.....++.+..++ ..+..-.-+=++|+.+.|||||++-+...+ T Consensus 36 ~~~~~~~~l~~~~~-~~~~~~~~IgItG~PGaGKSTLi~~L~~~~ 79 (337) T 2qm8_A 36 DHRAAVRDLIDAVL-PQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337) T ss_dssp HHHHHHHHHHHHHG-GGCCCSEEEEEECCTTSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCCHHHHHHHHHHHH T ss_conf 34899999999764-206882599523899988999999999997 No 196 >1yj5_A 5' polynucleotide kinase-3' phosphatase catalytic domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: c.108.1.9 c.37.1.1 Probab=82.70 E-value=0.78 Score=21.80 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=21.0 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH Q ss_conf 74337999970788625789999999 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) +..+.++++.|..++|||||.+-+.. T Consensus 222 ~~~~~liilvG~PGSGKST~a~~~~~ 247 (383) T 1yj5_A 222 SPNPEVVVAVGFPGAGKSTFIQEHLV 247 (383) T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHC T ss_conf 89975999967888871489999732 No 197 >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Probab=82.46 E-value=1 Score=21.10 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=23.3 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 37999970788625789999999723300 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) -+|+.+-|.-|+||||+.+.|...|.... T Consensus 4 G~~I~ieG~dGsGKtT~~~~L~~~l~~~~ 32 (204) T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANT 32 (204) T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGG T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC T ss_conf 73899989988859999999999984689 No 198 >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 2zi3_A* ... Probab=82.28 E-value=0.5 Score=23.09 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=24.3 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC Q ss_conf 33799997078862578999999972330003442 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~ 534 (789) .-+++.+-|.-|.||||+++.|..-|..+.+...+ T Consensus 23 ~~k~I~IeG~~GsGKST~~~~L~~~l~~~~~~~e~ 57 (263) T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEP 57 (263) T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCC T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 99989998998885999999999997348985766 No 199 >1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Probab=82.25 E-value=0.97 Score=21.19 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=23.7 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 33799997078862578999999972330 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) .-+|+.+.|.-|+||||....|..-|... T Consensus 8 kG~~I~ieG~dGsGKST~~~~L~~~L~~~ 36 (215) T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215) T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC T ss_conf 85599998998888999999999999867 No 200 >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Probab=82.22 E-value=0.85 Score=21.55 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=23.8 Q ss_pred CCCCEEEEEE-ECCCCCHHHHHHHHHHHHCCCC Q ss_conf 7433799997-0788625789999999723300 Q gi|254781225|r 498 NKAQRFIHIR-GVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 498 ~~~~~~~~~~-G~G~nGKSt~~~~l~~llG~~~ 529 (789) ++...+.|.+ ||.++||||+...|..-||=.+ T Consensus 12 ~k~~~i~IaIDGPagsGKsT~Ak~LAk~lg~~~ 44 (236) T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTY 44 (236) T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEE T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE T ss_conf 454673899889997788999999999939958 No 201 >2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A* Probab=82.21 E-value=1.1 Score=20.92 Aligned_cols=23 Identities=43% Similarity=0.743 Sum_probs=19.7 Q ss_pred EEEEEECCCCCHHHHHHHHHHHH Q ss_conf 99997078862578999999972 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~ll 525 (789) |+.+-|.-|+||||.+++|..-| T Consensus 2 fI~ieG~dGsGKsT~~~~L~~~L 24 (197) T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197) T ss_dssp EEEEECSTTSSHHHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHH T ss_conf 89998998888999999999999 No 202 >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell membrane, GTP-binding, ION transport; 2.50A {Legionella pneumophila} Probab=82.08 E-value=0.86 Score=21.52 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=16.3 Q ss_pred EEEEECCCCCHHHHHHHHHH Q ss_conf 99970788625789999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ 523 (789) +.+.|..+.|||||+|.|.. T Consensus 4 v~lvG~pNvGKSTL~N~L~g 23 (256) T 3iby_A 4 ALLIGNPNCGKTTLFNALTN 23 (256) T ss_dssp EEEEESTTSSHHHHHHHHHT T ss_pred EEEECCCCCCHHHHHHHHHC T ss_conf 99989999659999999958 No 203 >1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A* Probab=82.02 E-value=1.2 Score=20.62 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=21.0 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 99997078862578999999972330 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) .+-++|+-++||||+.++|..-+|-. T Consensus 3 iIgltG~~gSGKsTva~~L~e~~g~~ 28 (241) T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAV 28 (241) T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEE T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCE T ss_conf 99977999888999999999975997 No 204 >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Probab=81.85 E-value=1.1 Score=20.79 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=22.7 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 379999707886257899999997233 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) -+|+.+-|.-|+||||..+.|...|.. T Consensus 5 G~fIviEGidGsGKST~~~~L~~~L~~ 31 (216) T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216) T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC T ss_conf 728999899888499999999999971 No 205 >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* Probab=81.78 E-value=0.84 Score=21.60 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=12.7 Q ss_pred EEEEEECCCCCHHHHHHHHH Q ss_conf 99997078862578999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789) -+++.|.-++|||||+|.|. T Consensus 26 ~I~VvG~~ssGKSsliNaLl 45 (315) T 1jwy_B 26 QIVVVGSQSSGKSSVLENIV 45 (315) T ss_dssp EEEEEECSSSSHHHHHHHHH T ss_pred EEEEEECCCCCHHHHHHHHH T ss_conf 59999188896999999996 No 206 >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Probab=81.75 E-value=0.75 Score=21.94 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=8.9 Q ss_pred EEEEEECCCCCHHHHHHHHHHHH Q ss_conf 99997078862578999999972 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~ll 525 (789) .+++.|+.++|||-+.--|..-+ T Consensus 7 vi~I~GpTasGKt~la~~lA~~~ 29 (323) T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323) T ss_dssp EEEEECCTTSCHHHHHHHHHHHS T ss_pred EEEEECCCCCCHHHHHHHHHHHC T ss_conf 89998977116999999999987 No 207 >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Probab=81.72 E-value=1 Score=21.07 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.2 Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 999707886257899999997233000 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) +++.|+.++||||....|..-+|=..+ T Consensus 3 I~i~GpPGsGK~T~a~~La~~~~~~~i 29 (216) T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHI 29 (216) T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEE T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEE T ss_conf 999899999869999999999799478 No 208 >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Probab=81.63 E-value=1.9 Score=19.27 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=26.5 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 99999999999759874337999970788625789999999723300 Q gi|254781225|r 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 483 ~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) .+.+++.++..=.- .....-+.+.|..+.||||++|.| +|... T Consensus 19 ~~~l~~~~~~~~~~-~~~~l~I~l~G~tg~GKSSliN~L---~g~~~ 61 (262) T 3def_A 19 QEKLIEFFGKLKQK-DMNSMTVLVLGKGGVGKSSTVNSL---IGEQV 61 (262) T ss_dssp HHHHHHHHHHHHHT-TCCEEEEEEEECTTSSHHHHHHHH---HTSCC T ss_pred HHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHH---HCCCE T ss_conf 99999999998844-888888999899999599999998---47881 No 209 >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} Probab=81.60 E-value=0.7 Score=22.12 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=22.8 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 74337999970788625789999999723 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) .+..-.+-+.|+-++|||||+++|..++- T Consensus 379 i~~GEiv~i~G~NGsGKSTllk~L~G~~~ 407 (607) T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607) T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSC T ss_pred CCCCCEEEEECCCCCCHHHHHHHHCCCCC T ss_conf 78974899977888862429999708978 No 210 >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} Probab=81.33 E-value=1.4 Score=20.05 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=23.7 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 743379999707886257899999997233 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) +..|..+=++|.-++||||+.++++.-+|- T Consensus 9 ~~~~mIIgiTG~igSGKStv~~~l~~~~g~ 38 (192) T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGA 38 (192) T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCC T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCC T ss_conf 557779998789878899999999885399 No 211 >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis} Probab=81.24 E-value=1.2 Score=20.69 Aligned_cols=27 Identities=33% Similarity=0.569 Sum_probs=20.6 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 379999707886257899999997233 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) -.|+.+-|.-|+||||..++|..-|.. T Consensus 21 gmfIviEG~dGsGKTT~~~~L~e~L~~ 47 (223) T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223) T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 649998899788699999999999997 No 212 >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5} Probab=81.19 E-value=1.1 Score=20.85 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.2 Q ss_pred EEEEECCCCCHHHHHHHHHHHHC Q ss_conf 99970788625789999999723 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG 526 (789) +-++|.-|+||||+.+.++. +| T Consensus 4 IgItG~iGSGKSTv~~~l~~-~G 25 (204) T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LG 25 (204) T ss_dssp EEEEECTTSSHHHHHHHHHH-TT T ss_pred EEEECCCCCCHHHHHHHHHH-CC T ss_conf 99979997779999999998-79 No 213 >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* Probab=81.07 E-value=1.1 Score=20.74 Aligned_cols=43 Identities=7% Similarity=0.015 Sum_probs=29.5 Q ss_pred CCHHHHHHHHHHHHHCCHHHHHHHH---HEEECCCCEECHHHHHHHHHH Q ss_conf 7889999999999842638888754---326268841117999999999 Q gi|254781225|r 675 IPEVCLKAKEEERQGTDTYQAWIDD---CCDIGENLWEESHSLAKSYSE 720 (789) Q Consensus 675 ~p~~v~~a~~~y~~~~D~v~~fi~e---~ce~~~~~~~~~~~l~~~y~~ 720 (789) .|+.++.-.+.|.++..+|-.|..+ +.+++.+ ...++++.-.. T Consensus 185 ~~E~i~kRl~~Y~~~t~pvi~~y~~~~~l~~IDg~---~~~eV~~~I~~ 230 (246) T 2bbw_A 185 KPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGT---ETNKIWPYVYT 230 (246) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECS---CHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC---CHHHHHHHHHH T ss_conf 89999999999999988999999846988998298---82899999999 No 214 >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* Probab=80.99 E-value=0.79 Score=21.79 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=40.5 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCC-HHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCC Q ss_conf 4337999970788625789999999723300-03442-67642012455556898899738980999934677 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAE-ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~-~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~ 569 (789) ...-.++++|+.|.||+.+...|..-+|... -.++. ..+++.-++.....-+--+..+....+++++|.+. T Consensus 121 ~~~g~~l~~GppG~GKT~la~alA~~~~~~~~~~~~~~~~~~~~~~G~~e~~~r~~~~~~~~~~i~fiDeid~ 193 (331) T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKN 193 (331) T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTT T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHHH T ss_conf 8898078778999879999999999855799975720647777324768999999999987456255078888 No 215 >2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} Probab=80.93 E-value=1.2 Score=20.54 Aligned_cols=17 Identities=41% Similarity=0.706 Sum_probs=6.5 Q ss_pred EEEEEECCCCCHHHHHH Q ss_conf 99997078862578999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMN 519 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~ 519 (789) ++|+.|.||.||||+.- T Consensus 21 ~i~~~GKGGVGKTT~a~ 37 (329) T 2woo_A 21 WIFVGGKGGVGKTTTSC 37 (329) T ss_dssp EEEEECSSSSSHHHHHH T ss_pred EEEEECCCCCCHHHHHH T ss_conf 99996998682999999 No 216 >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Probab=80.69 E-value=1.2 Score=20.51 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=7.0 Q ss_pred CCEEEEEEEC Q ss_conf 9879999646 Q gi|254781225|r 63 QPLYAFDIDS 72 (789) Q Consensus 63 ~glv~iDiD~ 72 (789) ..+++||.|. T Consensus 45 ~rVLlvD~Dp 54 (334) T 3iqw_A 45 RSVLLLSTDP 54 (334) T ss_dssp SCEEEEECCS T ss_pred CCEEEEECCC T ss_conf 9489993899 No 217 >3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* Probab=79.97 E-value=2.1 Score=18.91 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=6.4 Q ss_pred CCEEEEEEECCC Q ss_conf 337999970788 Q gi|254781225|r 500 AQRFIHIRGVGG 511 (789) Q Consensus 500 ~~~~~~~~G~G~ 511 (789) ..++.+++|.++ T Consensus 344 ~~ki~~V~G~~~ 355 (437) T 3nrs_A 344 QGKVRAVVGMLS 355 (437) T ss_dssp -CCEEEEECCBT T ss_pred CCCEEEEECCCC T ss_conf 798699964358 No 218 >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PSI-2, protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} Probab=79.86 E-value=1.4 Score=20.13 Aligned_cols=29 Identities=24% Similarity=0.159 Sum_probs=23.8 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 43379999707886257899999997233 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ..-...+++|+.|+|||++...+...++- T Consensus 3 ~~~~i~Ll~G~PGtGKT~~a~~la~~l~~ 31 (199) T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMANDEM 31 (199) T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHCGG T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHCC T ss_conf 76569999899997099999999999685 No 219 >2wsm_A Hydrogenase expression/formation protein (HYPB); hydrogenase maturation factor, metal binding protein; 2.30A {Archaeoglobus fulgidus} Probab=79.80 E-value=1.4 Score=20.18 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=20.4 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 79999707886257899999997233 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ..+-+.|..+.|||||+|-|..-+.. T Consensus 31 ~~V~ivG~pnaGKSTLln~L~~~~~~ 56 (221) T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGN 56 (221) T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTT T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC T ss_conf 49998889999899999999988614 No 220 >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.37.1.8 Probab=79.64 E-value=1.1 Score=20.72 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=16.8 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +.+.|..+.|||||+|.|. T Consensus 4 I~lvG~~n~GKStLin~L~ 22 (190) T 2cxx_A 4 IIFAGRSNVGKSTLIYRLT 22 (190) T ss_dssp EEEEEBTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9998999986999999996 No 221 >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 Probab=79.61 E-value=0.29 Score=24.66 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.2 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 99997078862578999999972330 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) +.+++|+-+.||||+++.|..+|+.. T Consensus 29 ~tvi~G~NGsGKStil~Ai~~~L~g~ 54 (227) T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPD 54 (227) T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCC T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC T ss_conf 28998899998799999999996687 No 222 >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics, NPPSFA; HET: GDP; 1.96A {Thermus thermophilus HB8} Probab=79.39 E-value=1.2 Score=20.48 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=16.3 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +.+.|..+.|||||++-|. T Consensus 4 I~lvG~~nvGKSsLin~l~ 22 (161) T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161) T ss_dssp EEEECCTTSSHHHHHHHHH T ss_pred EEEECCCCCHHHHHHHHHH T ss_conf 9998999971999999997 No 223 >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=79.36 E-value=1.3 Score=20.44 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=18.5 Q ss_pred CCEEEEEEECCCCCHHHHHHHHH Q ss_conf 33799997078862578999999 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) .+--+++.|..+.|||||++-|. T Consensus 11 ~~~~i~ivG~~n~GKSsLin~l~ 33 (218) T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLT 33 (218) T ss_dssp CCCEEEEECSTTSSHHHHHHHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHH T ss_conf 89699999999999999999996 No 224 >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 3.20A {Nostoc SP} Probab=79.35 E-value=1.1 Score=20.89 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=20.8 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 43379999707886257899999997 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789) ++-.-+.+.|..+.|||||+|.|..- T Consensus 222 ~~G~~VaIvG~PNvGKSSL~N~L~~~ 247 (462) T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQS 247 (462) T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHH T ss_pred HCCCEEEEECCCCCCCCHHHHHHHCC T ss_conf 64987999899987600898887556 No 225 >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Probab=79.27 E-value=1.3 Score=20.26 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=19.7 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHH Q ss_conf 4337999970788625789999999 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) ..++-+.+.|..+.|||||++-+.. T Consensus 5 ~~~~~I~ivG~~~~GKTsLl~~l~~ 29 (214) T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLT 29 (214) T ss_dssp ---CEEEEECSTTSSHHHHHHHHHH T ss_pred CCCCEEEEECCCCCCHHHHHHHHHC T ss_conf 7989899998999888999999972 No 226 >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Probab=79.21 E-value=1.2 Score=20.52 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=16.3 Q ss_pred CEEEEEEECCCCCHHHHHHHHHH Q ss_conf 37999970788625789999999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) ..-+.+.|..+.|||||+|.|.. T Consensus 69 ~l~iai~G~~n~GKSsliN~l~g 91 (413) T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413) T ss_dssp CEEEEEEECTTSSHHHHHHHHHT T ss_pred CCEEEEECCCCCCHHHHHHHHHC T ss_conf 72699988999879999999848 No 227 >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, complete proteome, DNA binding, DNA repair; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Probab=78.89 E-value=1.7 Score=19.50 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=38.9 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHH-----HCCCC-CCCCCHH----HHHH---CCCCCCCCCCH---------HHHHHC Q ss_conf 3379999707886257899999997-----23300-0344267----6420---12455556898---------899738 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYA-----FGNQY-VINAEAS----DIMQ---NRPPEAGKANP---------SLIRLM 557 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~l-----lG~~~-~~~~~~~----~~~~---~~~~~~~~~~~---------~la~l~ 557 (789) ...+++++||-..||||++..+.-+ +|-+. +...... .++. ...-..|..+| -|-..- T Consensus 606 ~~~~~iiTGpNm~GKSt~lrqial~~ilAqiG~~VPA~~a~i~~~d~Iftrig~~D~i~~g~STF~~Em~e~~~il~~at 685 (800) T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNAT 685 (800) T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCC T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEHHHCEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 77179997788886128998999999999829947465548646476999936630234370649999999999998589 Q ss_pred CCEEEEEECCCCCCCC Q ss_conf 9809999346777601 Q gi|254781225|r 558 GSRIVIISETNENDEI 573 (789) Q Consensus 558 g~r~~~~~E~~~~~~~ 573 (789) ..-|++++|...|--. T Consensus 686 ~~SLviiDElGrGTst 701 (800) T 1wb9_A 686 EYSLVLMDEIGRGTST 701 (800) T ss_dssp TTEEEEEESCCCCSSS T ss_pred CCEEEEEECCCCCCCH T ss_conf 9829998059999985 No 228 >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* Probab=78.51 E-value=2.4 Score=18.62 Aligned_cols=56 Identities=13% Similarity=-0.087 Sum_probs=36.2 Q ss_pred HHHHHHHHHHC--CC----HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 78999998887--99----99999999999999759874337999970788625789999999723 Q gi|254781225|r 467 QEFLDLVSGYF--ES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 467 p~~~~~l~~~~--~d----~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) .++.+.|.+=. |+ +|+.+ .+..+.-+..+.-..++++|-.++||||+.+.+..-|= T Consensus 359 telr~~L~~G~~iP~~f~~peVa~----~L~~~~Ppr~kqG~~i~~tglsgsgkstia~~l~~~l~ 420 (511) T 1g8f_A 359 TELRRRLRVGGEIPEWFSYPEVVK----ILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511) T ss_dssp HHHHHHHHHTCCCCTTTSCHHHHH----HHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCCCCCCCCCHHHHH----HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 999999977698894418899999----99985488000737999807888888899999999999 No 229 >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Probab=78.48 E-value=1.4 Score=20.03 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=19.8 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 799997078862578999999972 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ..+-+.|..+.|||||+|.|..-. T Consensus 39 ~~V~ivG~pnaGKSTLln~L~~~~ 62 (226) T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226) T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHHHHH T ss_conf 499998899998999999999984 No 230 >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Probab=78.37 E-value=1.3 Score=20.31 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.0 Q ss_pred EEEEEECCCCCHHHHHHHHH Q ss_conf 99997078862578999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789) -+.+.|..+.|||||+|.|. T Consensus 25 ~I~ivG~~nvGKSSLiN~L~ 44 (195) T 1svi_A 25 EIALAGRSNVGKSSFINSLI 44 (195) T ss_dssp EEEEEEBTTSSHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHH T ss_conf 99999999984999999996 No 231 >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Probab=78.35 E-value=2 Score=19.10 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=18.3 Q ss_pred CCEEEEEEECCCCCHHHHHHHHH Q ss_conf 33799997078862578999999 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) ...-+.+.|..+.|||||++.|. T Consensus 6 k~~~I~lvG~~~vGKSSLin~l~ 28 (188) T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALT 28 (188) T ss_dssp CEEEEEEECSTTSSHHHHHHHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHH T ss_conf 54589999999987999999996 No 232 >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* Probab=78.33 E-value=2.4 Score=18.58 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=32.6 Q ss_pred HHHHHHHHHHC-CCHHH---------------HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 78999998887-99999---------------9999999999975987433799997078862578999999972 Q gi|254781225|r 467 QEFLDLVSGYF-ESEEV---------------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 467 p~~~~~l~~~~-~d~e~---------------~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ....++++.+. ||.-. .+...+.+..+ .+.+..-.-+-++|+.+.|||||++-|..-+ T Consensus 30 ~~~~~l~~~~~~g~~~alar~it~~E~~~~~~~~~~~~~l~~~-~~~~~~~~rIgItG~PGaGKSTLi~~L~~~~ 103 (355) T 3p32_A 30 DTVDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRL-LPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355) T ss_dssp -CHHHHHHHHHTTCTTHHHHHHHHHHCCSHHHHHHHHHHHHHH-GGGCCCSEEEEEECCTTSSHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHCCCCCEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 7699999999879998999999998789952399999999987-3016897599742899998999999999999 No 233 >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Probab=78.27 E-value=2.4 Score=18.57 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=35.6 Q ss_pred HHHHHHHHHH-C-C----CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 7899999888-7-9----9999999999999997598743379999707886257899999997233 Q gi|254781225|r 467 QEFLDLVSGY-F-E----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 467 p~~~~~l~~~-~-~----d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ..+.+.|.+= . | -+|+.+.|.+. .-+.......++++|-.++||||+.+.|..-|.. T Consensus 333 t~lR~~L~~G~~pP~~f~rpEV~~~L~~~----~~~~~~~gmvIw~tGlsGsGKTTla~~l~~~L~~ 395 (552) T 3cr8_A 333 EEFQRRMRAGLKIPEWYSFPEVLAELHRQ----TPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552) T ss_dssp HHHHHHHTTTCCCCTTTSCHHHHHHHHHH----SCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCCCCCHHCCCHHHHHHHHH----HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 99999997699999120263278999987----5440477459999578999876999999999986 No 234 >3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} Probab=78.25 E-value=1.5 Score=19.86 Aligned_cols=17 Identities=41% Similarity=0.794 Sum_probs=8.0 Q ss_pred EEEEEEECCCCCHHHHH Q ss_conf 79999707886257899 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLM 518 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~ 518 (789) +++|+.|.||.||||+. T Consensus 19 r~i~~sGKGGvGKTT~a 35 (348) T 3io3_A 19 KWIFVGGKGGVGKTTTS 35 (348) T ss_dssp SEEEEECSTTSSHHHHH T ss_pred EEEEEECCCCCHHHHHH T ss_conf 59999689857299999 No 235 >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Probab=78.08 E-value=1.9 Score=19.30 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=42.5 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHH-----HCCCC-CCCCCHHHHHH---CCC----CCCCCCCH---------HHHHHC Q ss_conf 3379999707886257899999997-----23300-03442676420---124----55556898---------899738 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYA-----FGNQY-VINAEASDIMQ---NRP----PEAGKANP---------SLIRLM 557 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~l-----lG~~~-~~~~~~~~~~~---~~~----~~~~~~~~---------~la~l~ 557 (789) ...+++++|+-..||||++..+.-+ +|-|. +.+.....+.. .-+ -..|..+| -|-..- T Consensus 788 ~~~~~liTGPNmgGKST~LRqial~viLAQiG~~VPA~~a~i~~~D~IftRiga~D~i~~g~STF~vEm~e~~~IL~~at 867 (1022) T 2o8b_B 788 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHAT 867 (1022) T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCC T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEHHHCEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 62289997899886189999999999999809955166668436576999706500221370569999999999998589 Q ss_pred CCEEEEEECCCCCCC------CCCCEEEEEE Q ss_conf 980999934677760------1310024541 Q gi|254781225|r 558 GSRIVIISETNENDE------INAAKIKQMT 582 (789) Q Consensus 558 g~r~~~~~E~~~~~~------~~~~~~K~lt 582 (789) ..-|++++|...|-- +..+.++.|. T Consensus 868 ~~SLVllDElGrGTst~dG~aIA~avle~L~ 898 (1022) T 2o8b_B 868 AHSLVLVDELGRGTATFDGTAIANAVVKELA 898 (1022) T ss_dssp TTCEEEEECTTTTSCHHHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHH T ss_conf 9848998238899885789999999999998 No 236 >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Probab=77.90 E-value=1.6 Score=19.66 Aligned_cols=22 Identities=41% Similarity=0.671 Sum_probs=16.2 Q ss_pred EEEEECCCCCHHHHHHHHHHHH Q ss_conf 9997078862578999999972 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ll 525 (789) +-+.|+-+.||||+++++...+ T Consensus 702 vai~G~nGaGKSTLlk~l~G~~ 723 (986) T 2iw3_A 702 IAVIGPNGAGKSTLINVLTGEL 723 (986) T ss_dssp EEECSCCCHHHHHHHHHHTTSS T ss_pred EEEECCCCCCHHHHHHHHHCCC T ss_conf 9853788877689999861756 No 237 >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Probab=77.88 E-value=1.4 Score=20.22 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=15.5 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +.+.|..+.|||||+|.|. T Consensus 8 I~lvG~~nvGKStLin~l~ 26 (258) T 3a1s_A 8 VALAGCPNVGKTSLFNALT 26 (258) T ss_dssp EEEECCTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999998999999995 No 238 >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 Probab=77.86 E-value=1.3 Score=20.43 Aligned_cols=21 Identities=38% Similarity=0.724 Sum_probs=17.4 Q ss_pred EEEEEEECCCCCHHHHHHHHH Q ss_conf 799997078862578999999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~ 522 (789) +..++.|+.+-|||||+|.|. T Consensus 170 k~sv~~G~SGVGKSSLiN~L~ 190 (301) T 1u0l_A 170 KISTMAGLSGVGKSSLLNAIN 190 (301) T ss_dssp SEEEEECSTTSSHHHHHHHHS T ss_pred CEEEEECCCCCCHHHHHHCCC T ss_conf 859999479876888975238 No 239 >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell membrane, GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* Probab=77.44 E-value=1.5 Score=19.96 Aligned_cols=19 Identities=42% Similarity=0.578 Sum_probs=13.6 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +.+.|..+.|||||+|.|. T Consensus 6 I~lvG~~nvGKSTLin~L~ 24 (274) T 3i8s_A 6 IGLIGNPNSGKTTLFNQLT 24 (274) T ss_dssp EEEEECTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999899997999999996 No 240 >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Probab=77.16 E-value=1.7 Score=19.61 Aligned_cols=17 Identities=53% Similarity=0.601 Sum_probs=7.6 Q ss_pred EEEEECCCCCHHHHHHH Q ss_conf 99970788625789999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNL 520 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~ 520 (789) +-+.|..+.|||||+|. T Consensus 11 VaivG~pN~GKSTL~N~ 27 (301) T 1ega_A 11 IAIVGRPNVGKSTLLNK 27 (301) T ss_dssp EEEECSSSSSHHHHHHH T ss_pred EEEECCCCCCHHHHHHH T ss_conf 99998999989999999 No 241 >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Probab=77.14 E-value=1.6 Score=19.68 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=19.2 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 9999707886257899999997233 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) .+-++|.-|+||||+.++++. +|- T Consensus 4 iIgitG~igSGKStv~~~l~~-~G~ 27 (206) T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGV 27 (206) T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTC T ss_pred EEEEECCCCCCHHHHHHHHHH-CCC T ss_conf 999889987669999999998-899 No 242 >2o8b_A DNA mismatch repair protein MSH2; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 2o8e_A* Probab=76.96 E-value=1.9 Score=19.23 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=20.1 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 3379999707886257899999997 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYA 524 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789) .+.+++++||-..||||++..+.-+ T Consensus 661 ~~~~~liTGpNmgGKSt~Lr~i~l~ 685 (934) T 2o8b_A 661 KQMFHIITGPNMGGKSTYIRQTGVI 685 (934) T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH T ss_conf 4521587778877606799899999 No 243 >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Probab=76.96 E-value=2.6 Score=18.33 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=13.0 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 999970788625789999999723 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG 526 (789) -+.+.|+-+.||||+++.|..-+| T Consensus 172 rI~i~G~~stGKTTL~~~L~~~~~ 195 (365) T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFN 195 (365) T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT T ss_pred EEEEECCCCCCHHHHHHHHHHHHC T ss_conf 899978887777899999999969 No 244 >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Probab=76.90 E-value=1.1 Score=20.74 Aligned_cols=25 Identities=44% Similarity=0.679 Sum_probs=20.9 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 9999707886257899999997233 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ++.+-|.-|+||||+++.|..-|.. T Consensus 2 ~I~ieG~dGsGKST~~~~L~e~l~~ 26 (214) T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214) T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 8999899878999999999999987 No 245 >3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} Probab=76.72 E-value=2.6 Score=18.32 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=22.5 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 3379999707886257899999997233 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ...++-+.|.-|+||||+...|..-||- T Consensus 13 ~~~iItI~g~~GsGKsTia~~LA~~Lg~ 40 (223) T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGI 40 (223) T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTC T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCC T ss_conf 9979985799989979999999999498 No 246 >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Probab=76.71 E-value=1.8 Score=19.43 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=11.5 Q ss_pred EEEECCCCCCCCCCEEECCC Q ss_conf 38804776888874575177 Q gi|254781225|r 134 YFVAYNIHPKTKKEYTWTTP 153 (789) Q Consensus 134 q~V~~gshp~Tg~~Y~w~~~ 153 (789) +-|..|..|.|.|-|-|..+ T Consensus 65 F~v~~~~~~~T~Giw~~~~~ 84 (592) T 1f5n_A 65 FSLGSTVQSHTKGIWMWCVP 84 (592) T ss_dssp SCCCCSSSCCCCSEEEEEEE T ss_pred CCCCCCCCCCCCEEEEEEEC T ss_conf 88788888878507887300 No 247 >2dpx_A GTP-binding protein RAD; GTPase, small-G, RGK, signal transduction, diabetes, signaling protein; HET: GDP; 1.80A {Homo sapiens} PDB: 2gjs_A* Probab=76.68 E-value=1.9 Score=19.18 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=17.9 Q ss_pred CCCCEE-EEEEECCCCCHHHHHHHH Q ss_conf 743379-999707886257899999 Q gi|254781225|r 498 NKAQRF-IHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 498 ~~~~~~-~~~~G~G~nGKSt~~~~l 521 (789) +.++.| +++.|..+.|||+|++-+ T Consensus 3 s~~~ifKi~lvG~~~vGKSsli~~~ 27 (174) T 2dpx_A 3 SDESVYKVLLLGAPGVGKSALARIF 27 (174) T ss_dssp ---CEEEEEEECCTTSSHHHHHHHH T ss_pred CCCCEEEEEEECCCCCCHHHHHHHH T ss_conf 8376889999999995899999999 No 248 >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Probab=76.65 E-value=2.2 Score=18.85 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=21.2 Q ss_pred HHHCCCCC-CCEEEEEEECCCCCHHHHHHHHH Q ss_conf 99759874-33799997078862578999999 Q gi|254781225|r 492 MALLGGNK-AQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 492 ~~l~g~~~-~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) ..|++... .+.=+++.|..+.|||+|++-+. T Consensus 12 ~g~~p~~~k~~~kI~ivG~~~~GKTsLi~~l~ 43 (188) T 1zd9_A 12 SGLVPRGSKEEMELTLVGLQYSGKTTFVNVIA 43 (188) T ss_dssp -------CCEEEEEEEECSTTSSHHHHHHHHH T ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH T ss_conf 88787888873399999999999899999997 No 249 >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Probab=76.55 E-value=1.7 Score=19.60 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.4 Q ss_pred EEEEECCCCCHHHHHHHHHH Q ss_conf 99970788625789999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ 523 (789) +++.|.++.|||+|++-+.. T Consensus 11 i~viG~~~vGKSsli~~~~~ 30 (182) T 1ky3_A 11 VIILGDSGVGKTSLMHRYVN 30 (182) T ss_dssp EEEECCTTSSHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHH T ss_conf 99999899598999999970 No 250 >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Probab=76.37 E-value=1.9 Score=19.21 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=23.1 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 43379999707886257899999997233 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ..++++|..|.||-||||+.-.+...+-. T Consensus 325 ~~~~i~~~~gKGGVGKTtva~~lA~~la~ 353 (589) T 1ihu_A 325 NEHGLIMLMGKGGVGKTTMAAAIAVRLAD 353 (589) T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH T ss_conf 58679996689993289999999999986 No 251 >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Probab=76.05 E-value=2.1 Score=18.98 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=72.9 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHH-----HCCCCC-CCCCHH----HHHH---CCCCCCCCCCH---------HHHHHCC Q ss_conf 379999707886257899999997-----233000-344267----6420---12455556898---------8997389 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYA-----FGNQYV-INAEAS----DIMQ---NRPPEAGKANP---------SLIRLMG 558 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~l-----lG~~~~-~~~~~~----~~~~---~~~~~~~~~~~---------~la~l~g 558 (789) +.+++++|+-..|||||+..+.-+ +|-+-- ...... .++. ......|..+| -|-..-. T Consensus 576 ~~~~iITGpNm~GKST~LRqval~~iLAqiG~~VPA~~a~~~~~d~Iftrig~~D~i~~g~STF~~Em~e~~~IL~~at~ 655 (765) T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATE 655 (765) T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCT T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 43799988887760999999999999998098388421296066879999476324343756399999999999985899 Q ss_pred CEEEEEECCCCCCCCCC------CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEEC Q ss_conf 80999934677760131------002454159858732104786068714528999738863426798416646899965 Q gi|254781225|r 559 SRIVIISETNENDEINA------AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 (789) Q Consensus 559 ~r~~~~~E~~~~~~~~~------~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF 632 (789) .-|++++|...|--..+ +.++.|.. .+. .. +.+-|.+.+.+.. ..++....| T Consensus 656 ~SLvliDElgrGTst~dG~aia~avle~L~~----------~~~--------~~-lfaTH~~eL~~l~---~~~v~~~h~ 713 (765) T 1ewq_A 656 NSLVLLDEVGRGTSSLDGVAIATAVAEALHE----------RRA--------YT-LFATHYFELTALG---LPRLKNLHV 713 (765) T ss_dssp TEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----------HTC--------EE-EEECCCHHHHTCC---CTTEEEEEE T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHH----------CCC--------EE-EEECCCHHHHHCC---CCCCEEEEE T ss_conf 8299994598899848999999999999985----------799--------79-9989718988435---576258999 Q ss_pred CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH Q ss_conf 8878887878334220120447999999999999987889887889999999999 Q gi|254781225|r 633 DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 (789) Q Consensus 633 ~~~~~~~d~~~~~~~~~~e~~~i~~w~l~g~~~~~~~g~~~~~p~~v~~a~~~y~ 687 (789) ...+.+....+..++.. +..--.+++ .-....|+ |+.|.+.-++.. T Consensus 714 ~~~~~~~~i~f~Ykl~~--G~~~~S~gi---~vA~~aG~----p~~vi~rA~~i~ 759 (765) T 1ewq_A 714 AAREEAGGLVFYHQVLP--GPASKSYGV---EVAAMAGL----PKEVVARARALL 759 (765) T ss_dssp EEECCSSSCEEEEEEEE--SCCSSCCHH---HHHHHTTC----CHHHHHHHHHHH T ss_pred EEEEECCEEEEEEEEEE--CCCCCHHHH---HHHHHHCC----CHHHHHHHHHHH T ss_conf 99997892618889846--899870999---99999691----999999999999 No 252 >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* Probab=76.00 E-value=2.4 Score=18.52 Aligned_cols=33 Identities=30% Similarity=0.206 Sum_probs=22.2 Q ss_pred HHHHHCCCCCCCE-EEEEEECCCCCHHHHHHHHH Q ss_conf 9999759874337-99997078862578999999 Q gi|254781225|r 490 VGMALLGGNKAQR-FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 490 ~g~~l~g~~~~~~-~~~~~G~G~nGKSt~~~~l~ 522 (789) +|.++.+...... =+++.|..+.|||+|++-+. T Consensus 3 ~~~~~~~~~~~~~~KI~vvG~~~vGKTSli~r~~ 36 (179) T 1z0f_A 3 LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFT 36 (179) T ss_dssp --------CCSEEEEEEEECSTTSSHHHHHHHHH T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH T ss_conf 8878999886756799999999918999999997 No 253 >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Probab=76.00 E-value=0.88 Score=21.45 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=17.8 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 79999707886257899999997233 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ..+-+.|..|+||||++++|..++-. T Consensus 1060 e~vaIVG~SGSGKSTL~~lL~rl~~p 1085 (1284) T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLERFYDP 1085 (1284) T ss_dssp SEEEEECSSSTTHHHHHHHHTTSSCC T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 99999899998699999999468768 No 254 >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} Probab=75.57 E-value=2.8 Score=18.09 Aligned_cols=12 Identities=0% Similarity=-0.172 Sum_probs=6.8 Q ss_pred EEEECCCCCCCC Q ss_conf 999738863426 Q gi|254781225|r 606 PFIVPNKHLFVR 617 (789) Q Consensus 606 ~~~~~N~~P~~~ 617 (789) +|++|.|.|.+. T Consensus 323 v~iTtt~~~~~~ 334 (359) T 2o5v_A 323 AIVTGTELAPGA 334 (359) T ss_dssp EEEEESSCCTTC T ss_pred EEEECCCCCCCC T ss_conf 999878986640 No 255 >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Probab=75.46 E-value=1.8 Score=19.41 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=18.2 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 79999707886257899999997233 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) +..++.|+.|-||||++|.| ++. T Consensus 166 k~sv~~G~SGVGKSSLIN~L---~~~ 188 (302) T 2yv5_A 166 FICILAGPSGVGKSSILSRL---TGE 188 (302) T ss_dssp CEEEEECSTTSSHHHHHHHH---HSC T ss_pred CEEEEECCCCCCHHHHHHHC---CHH T ss_conf 75999898996787887613---727 No 256 >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Probab=75.15 E-value=1.9 Score=19.28 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=15.8 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||++++.+. T Consensus 23 I~l~G~~~vGKSSLi~~l~ 41 (196) T 3llu_A 23 ILLMGLRRSGKSSIQKVVF 41 (196) T ss_dssp EEEEESTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999989989999999996 No 257 >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome assembly, GTP-binding; HET: GNP; 1.90A {Aquifex aeolicus} Probab=75.13 E-value=2 Score=19.09 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=11.8 Q ss_pred EEEEEECCCCCHHHHHHHHH Q ss_conf 99997078862578999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789) ++-+.|..+.|||||+|.|. T Consensus 12 ~VaivG~pNvGKStLiN~L~ 31 (308) T 3iev_A 12 YVAIVGKPNVGKSTLLNNLL 31 (308) T ss_dssp EEEEECSTTSSHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHH T ss_conf 89999999984999999996 No 258 >3lx5_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTP-binding, GTPase, transmembran nucleotide-binding; HET: AGO; 1.90A {Streptococcus thermophilus} PDB: 3lx8_A* Probab=75.07 E-value=1.8 Score=19.41 Aligned_cols=19 Identities=47% Similarity=0.690 Sum_probs=11.2 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +.+.|..+.|||||+|.|. T Consensus 6 ValvG~pNvGKStL~N~L~ 24 (272) T 3lx5_A 6 IALIGNPNSGKTSLFNLIT 24 (272) T ss_dssp EEEECCTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999999999999996 No 259 >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae} Probab=75.04 E-value=2.1 Score=19.02 Aligned_cols=11 Identities=27% Similarity=0.162 Sum_probs=4.9 Q ss_pred HHCCCEEEEEE Q ss_conf 73898099993 Q gi|254781225|r 555 RLMGSRIVIIS 565 (789) Q Consensus 555 ~l~g~r~~~~~ 565 (789) .|.+.-++++. T Consensus 395 ~L~~~ilAvs~ 405 (460) T 2npi_A 395 NLQHAIIAITF 405 (460) T ss_dssp HHTTEEEEEES T ss_pred HHHCCEEEEEE T ss_conf 86086899994 No 260 >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium LT2} Probab=75.00 E-value=1.7 Score=19.63 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=17.3 Q ss_pred EEEEEEECCCCCHHHHHHHHH Q ss_conf 799997078862578999999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~ 522 (789) +..++.|+.|-|||||+|.|. T Consensus 216 ktsv~~G~SGVGKSSLiN~L~ 236 (358) T 2rcn_A 216 RISIFAGQSGVGKSSLLNALL 236 (358) T ss_dssp SEEEEECCTTSSHHHHHHHHH T ss_pred CEEEEECCCCCCHHHHHHHHC T ss_conf 769998888765889997744 No 261 >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Probab=74.71 E-value=2 Score=19.06 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=17.8 Q ss_pred CEEEEEEECCCCCHHHHHHHHH Q ss_conf 3799997078862578999999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~ 522 (789) +.=+++.|..+.|||+|++-+. T Consensus 7 e~ki~lvG~~~vGKSsLi~~l~ 28 (171) T 1upt_A 7 EMRILILGLDGAGKTTILYRLQ 28 (171) T ss_dssp CEEEEEECSTTSSHHHHHHHHH T ss_pred CCEEEEECCCCCCHHHHHHHHH T ss_conf 0089999999989899999997 No 262 >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Probab=74.68 E-value=2 Score=19.05 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=12.8 Q ss_pred CEEEEEEECCCCCHHHHHHHHH Q ss_conf 3799997078862578999999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~ 522 (789) ..+.+++|+++.|||+|+--|. T Consensus 30 g~~~~i~G~~G~GKS~l~l~la 51 (279) T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLA 51 (279) T ss_dssp TSEEEEEESTTSSHHHHHHHHH T ss_pred CCEEEEECCCCCCHHHHHHHHH T ss_conf 9689998089898999999999 No 263 >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum 3D7} Probab=74.43 E-value=1.8 Score=19.43 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=18.9 Q ss_pred CCEEEEEEECCCCCHHHHHHHHH Q ss_conf 33799997078862578999999 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) ....+++.|..+.|||||+|.|. T Consensus 28 ~~~~V~lvG~~nvGKSSLln~L~ 50 (228) T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVS 50 (228) T ss_dssp TSEEEEEECSTTSSHHHHHHHHT T ss_pred CCCEEEEECCCCCCHHHHHHHHH T ss_conf 99999999999985999999984 No 264 >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Probab=74.39 E-value=2 Score=19.07 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=15.9 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +.+.|..+.|||||+|.|. T Consensus 7 I~ivG~~nvGKSSLin~l~ 25 (172) T 2gj8_A 7 VVIAGRPNAGKSSLLNALA 25 (172) T ss_dssp EEEEESTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999989999999999996 No 265 >1m2o_B GTP binding, GTP-binding protein SAR1; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Probab=74.18 E-value=2.3 Score=18.64 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=17.9 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHH Q ss_conf 337999970788625789999999 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) .+.=+++.|..+.|||||++-+.. T Consensus 22 k~~KI~ivG~~~~GKTsLl~~l~~ 45 (190) T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190) T ss_dssp --CEEEEEESTTSSHHHHHHHHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHHC T ss_conf 843899999999998999999928 No 266 >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Probab=74.16 E-value=2.7 Score=18.24 Aligned_cols=25 Identities=32% Similarity=0.386 Sum_probs=18.4 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHH Q ss_conf 8743379999707886257899999 Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~~~~l 521 (789) .+..+.=+++.|..+.|||+|++-+ T Consensus 2 ~~~r~~Ki~vvG~~~vGKTsLi~~~ 26 (178) T 2hxs_A 2 SHMRQLKIVVLGDGASGKTSLTTCF 26 (178) T ss_dssp CCCCEEEEEEECCTTSSHHHHHHHH T ss_pred CCCCEEEEEEECCCCCCHHHHHHHH T ss_conf 9887889999998997989999999 No 267 >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Probab=73.83 E-value=3.1 Score=17.81 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=19.3 Q ss_pred EEEEECCCCCHHHHHHHHHHHHC Q ss_conf 99970788625789999999723 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG 526 (789) +++.|..+-|||||+|.|..... T Consensus 163 v~vvG~~NvGKSTLIN~L~~~~~ 185 (368) T 3h2y_A 163 VYVVGCTNVGKSTFINRMIKEFS 185 (368) T ss_dssp EEEEEBTTSSHHHHHHHHHHHHT T ss_pred EEEECCCCCCHHHHHHHHHHHCC T ss_conf 99975787563788888765303 No 268 >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} Probab=73.55 E-value=3.2 Score=17.76 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=14.6 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 7999970788625789999999723 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) +-++++||.|.||+.+...|...+| T Consensus 64 k~iLl~GPpGtGKT~iAralA~~lg 88 (456) T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQELG 88 (456) T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC T ss_conf 7799989999779999999999748 No 269 >2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB: 2onj_A* Probab=73.47 E-value=0.72 Score=22.06 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=24.2 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 4337999970788625789999999723300 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) .......++|+-|.||||++++|..++-.+. T Consensus 365 ~~G~~i~ivG~sGsGKSTLl~ll~g~~~~~~ 395 (578) T 2hyd_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395 (578) T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCSE T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC T ss_conf 7887657889888418999999647888998 No 270 >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Probab=73.43 E-value=2.8 Score=18.12 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=22.8 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCC Q ss_conf 9999707886257899999997233000 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~ 530 (789) .+-+-|+.++||||+..+|..-||=.+. T Consensus 7 IIaIDGPagSGKST~ak~LA~~Lg~~~l 34 (227) T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227) T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEE T ss_conf 8997789867889999999999199765 No 271 >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Probab=72.99 E-value=2.5 Score=18.49 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=16.1 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 6 IvvlG~~~vGKTSli~~~~ 24 (170) T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170) T ss_dssp EEEEESTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999968899999998 No 272 >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* Probab=72.95 E-value=2.5 Score=18.50 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=16.3 Q ss_pred EEEEECCCCCHHHHHHHHHH Q ss_conf 99970788625789999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ 523 (789) +++.|.++.|||+|++.+.. T Consensus 32 I~ivG~~~vGKTSLi~~l~~ 51 (191) T 1oix_A 32 VVLIGDSGVGKSNLLSRFTR 51 (191) T ss_dssp EEEEECTTSSHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHH T ss_conf 99999999398999999972 No 273 >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Probab=72.79 E-value=3 Score=17.95 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=22.2 Q ss_pred HHCCCCCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 975987433799997078862578999999 Q gi|254781225|r 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 493 ~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) +..|.....+=+++.|..+.|||+|++-+. T Consensus 4 ~~~~~k~~~~Ki~vvG~~~vGKTsLi~~~~ 33 (181) T 2efe_B 4 AAAGNKSINAKLVLLGDVGAGKSSLVLRFV 33 (181) T ss_dssp ------CEEEEEEEECCTTSCHHHHHHHHH T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHH T ss_conf 768998207599999989968999999998 No 274 >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Probab=72.67 E-value=2.1 Score=18.98 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=18.6 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 3799997078862578999999972330 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) +.=+++.|..+.|||+|++- +.|++ T Consensus 18 e~kI~ivG~~~~GKSSLl~~---l~~~~ 42 (186) T 1ksh_A 18 ELRLLMLGLDNAGKTTILKK---FNGED 42 (186) T ss_dssp CEEEEEECSTTSSHHHHHHH---HTTCC T ss_pred EEEEEEECCCCCCHHHHHHH---HHCCC T ss_conf 34999999999998999999---95788 No 275 >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Probab=72.61 E-value=3.2 Score=17.76 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=17.7 Q ss_pred CCCEEEEEEECCCCCHHHHHHHH Q ss_conf 43379999707886257899999 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l 521 (789) ..+.=+++.|..+.|||+|++-+ T Consensus 14 ~~~~kI~vvG~~~~GKTsLi~~l 36 (181) T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQL 36 (181) T ss_dssp SSCEEEEEEESTTSSHHHHHHHH T ss_pred CCEEEEEEECCCCCCHHHHHHHH T ss_conf 97879999999999899999999 No 276 >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Probab=72.06 E-value=3.4 Score=17.53 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 9999999999999759874337999970788625789999999723 Q gi|254781225|r 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 481 e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) .+++-+.++++-. ..+....+++++|+.|.||||+.+-|..-+- T Consensus 6 ~l~~~v~~iL~rr--~knN~R~~ViLvG~pGvGKTaI~egLA~~I~ 49 (359) T 2ga8_A 6 KLADDVLQLLDNR--IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359) T ss_dssp HHHHHHHHHHHHT--TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH--HCCCCCCCEEEECCCCCCHHHHHHHHHHHHH T ss_conf 9999999998776--3489876769984999889999999999998 No 277 >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Probab=71.77 E-value=2.6 Score=18.38 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=9.9 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +.+.|..+.|||||+|.|. T Consensus 6 ValvG~~nvGKSsL~n~L~ 24 (271) T 3k53_A 6 VALVGNPNVGKTTIFNALT 24 (271) T ss_dssp EEEEECSSSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999971999999996 No 278 >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Probab=71.76 E-value=3.1 Score=17.85 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=16.5 Q ss_pred CEEEEEEECCCCCHHHHHHHH Q ss_conf 379999707886257899999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l 521 (789) ..=+++.|..+.|||||++-+ T Consensus 25 ~~KIlilG~~~sGKTSll~~l 45 (198) T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHML 45 (198) T ss_dssp CEEEEEEEETTSSHHHHHHHH T ss_pred CCEEEEECCCCCCHHHHHHHH T ss_conf 118999999999889999999 No 279 >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Probab=71.73 E-value=2.4 Score=18.53 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=16.8 Q ss_pred EEEEEEECCCCCHHHHHHHHH Q ss_conf 799997078862578999999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~ 522 (789) .-+.+.|..+.|||||++.|. T Consensus 4 ~~V~lvG~~~~GKSsLi~~L~ 24 (165) T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165) T ss_dssp EEEEEECSTTSSHHHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHH T ss_conf 199999899998999999997 No 280 >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} Probab=71.45 E-value=2 Score=19.17 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.4 Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 99970788625789999999723300 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) +-+=|+.++||||+...|..-||=.+ T Consensus 6 IaIDGpagSGKsT~ak~LA~~l~~~~ 31 (219) T 2h92_A 6 IALDGPAAAGKSTIAKRVASELSMIY 31 (219) T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEE T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEE T ss_conf 99778986788999999999929927 No 281 >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Probab=71.41 E-value=2.7 Score=18.25 Aligned_cols=20 Identities=40% Similarity=0.532 Sum_probs=16.8 Q ss_pred EEEEECCCCCHHHHHHHHHH Q ss_conf 99970788625789999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ 523 (789) +++.|..+.|||+|++-+.. T Consensus 11 i~lvG~~~vGKSsli~rl~~ 30 (207) T 1vg8_A 11 VIILGDSGVGKTSLMNQYVN 30 (207) T ss_dssp EEEECCTTSSHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHC T ss_conf 99999799299999999961 No 282 >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 2hcb_A* Probab=71.21 E-value=3.1 Score=17.88 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=52.8 Q ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC--CCCCCHHHHHHCCC--CCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEE Q ss_conf 99970788625789999999723300--03442676420124--555568988997389809999346777601310024 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAFGNQY--VINAEASDIMQNRP--PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~llG~~~--~~~~~~~~~~~~~~--~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K 579 (789) ++++|+.|.|||-|+..|.+-+-... +.-.+...+..... ...+........+...-+++++|.+.-. T Consensus 40 l~l~G~~G~GKTHLl~Ai~~~~~~~~~~v~y~~~~~~~~~~~~a~~~~~~~~~~~~~~~~dlLiiDDi~~l~-------- 111 (324) T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS-------- 111 (324) T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT-------- T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCHHHHC-------- T ss_conf 898889999899999999999985499759944999999999998648789999885125640003066541-------- Q ss_pred EEECCCEEEEEECCCCCCEE-EECCEEEEEECCCCCCCC-CCCCCEEEEEE Q ss_conf 54159858732104786068-714528999738863426-79841664689 Q gi|254781225|r 580 QMTGGDCMTARLNYGNTYSE-SPASFTPFIVPNKHLFVR-NPDDAWWRRYI 628 (789) Q Consensus 580 ~ltggD~i~ar~~~~~~~~~-~~p~~~~~~~~N~~P~~~-~~d~~~~rR~~ 628 (789) |.+.. .+.+| .-+.. ..-...++++++..|.-- ..+.-+..|+. T Consensus 112 ---~~~~~-qe~lf-~l~n~~~~~~k~iiits~~~P~~l~~~~~~L~SRl~ 157 (324) T 1l8q_A 112 ---GKERT-QIEFF-HIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE 157 (324) T ss_dssp ---TCHHH-HHHHH-HHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH T ss_pred ---CCHHH-HHHHH-HHHHHHHHCCCCEEEECCCCHHHHCCCCHHHHHHHH T ss_conf ---55578-99999-999999870996898569885654132267887864 No 283 >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural genomics, NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii OT3} Probab=71.16 E-value=2.4 Score=18.61 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=18.4 Q ss_pred EEEEEEECCCCCHHHHHHHHHH Q ss_conf 7999970788625789999999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ 523 (789) ..+.+.|..+.|||||+|.|.. T Consensus 168 ~~V~i~G~pnvGKSSLin~l~~ 189 (357) T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTT 189 (357) T ss_dssp CEEEEECSTTSSHHHHHHHHCS T ss_pred CEEEEECCCCCCHHHHHHHHHC T ss_conf 8899989999715159999838 No 284 >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Probab=70.86 E-value=3.2 Score=17.73 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=20.1 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 79999707886257899999997233 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) +.+-+.|..++||+||+.-|...|-. T Consensus 5 ki~~I~G~~gSGKTTLi~~Li~~L~~ 30 (169) T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169) T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 59999819999899999999999997 No 285 >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Probab=70.48 E-value=3.7 Score=17.31 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=18.7 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHH Q ss_conf 4337999970788625789999999 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) ....=+++.|..+.|||+|++.+.. T Consensus 7 ~~~~Ki~ivG~~~vGKSsLi~~~~~ 31 (181) T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQ 31 (181) T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCHHHHHHHHHC T ss_conf 8867999999799899999999970 No 286 >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Probab=70.37 E-value=3.6 Score=17.42 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=19.8 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 7999970788625789999999723 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) ..+-++|.-++||||+.+++.. +| T Consensus 5 ~IIgItG~igSGKStva~~l~~-~G 28 (218) T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LG 28 (218) T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TT T ss_pred EEEEEECCCCCCHHHHHHHHHH-CC T ss_conf 6999879887879999999998-79 No 287 >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Probab=70.29 E-value=3.8 Score=17.28 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=16.9 Q ss_pred CEEEEEEECCCCCHHHHHHHHH Q ss_conf 3799997078862578999999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~ 522 (789) +.=+++.|..+.|||+|++-+. T Consensus 16 ~~kI~liG~~~~GKTsli~~l~ 37 (187) T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFS 37 (187) T ss_dssp CEEEEEEESTTSSHHHHHHHHH T ss_pred EEEEEEECCCCCCHHHHHHHHH T ss_conf 6799999999988799999997 No 288 >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Probab=70.10 E-value=3.1 Score=17.79 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=16.4 Q ss_pred EEEEECCCCCHHHHHHHHHH Q ss_conf 99970788625789999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ 523 (789) +++.|..+.|||+|++.+.. T Consensus 13 I~v~G~~~vGKTsli~~l~~ 32 (186) T 2bme_A 13 FLVIGNAGTGKSCLLHQFIE 32 (186) T ss_dssp EEEEESTTSSHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHH T ss_conf 99999899499999999983 No 289 >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Probab=70.04 E-value=3.8 Score=17.25 Aligned_cols=82 Identities=11% Similarity=0.109 Sum_probs=45.0 Q ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC---CCCCCCCHHH-HHHC-CCCCCCCCCHHHHHHCCCEEE Q ss_conf 9999997598743379999707886257899999997233---0003442676-4201-245555689889973898099 Q gi|254781225|r 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN---QYVINAEASD-IMQN-RPPEAGKANPSLIRLMGSRIV 562 (789) Q Consensus 488 ~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~---~~~~~~~~~~-~~~~-~~~~~~~~~~~la~l~g~r~~ 562 (789) .+..|+-.-......-++++|+-|.|||.++..|.+-+-. +.+.-..... +..- ..-..+.....+..+....+. T Consensus 139 ~~~~~~~~~~~~~~~gl~l~G~~G~GKT~L~~ai~~~l~~~~~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~dlL 218 (308) T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVL 218 (308) T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEE T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 99999984754678828998999985899999999999875797189985359999999998531478999986306502 Q ss_pred EEECCCC Q ss_conf 9934677 Q gi|254781225|r 563 IISETNE 569 (789) Q Consensus 563 ~~~E~~~ 569 (789) +++|... T Consensus 219 iiDDlg~ 225 (308) T 2qgz_A 219 ILDDIGA 225 (308) T ss_dssp EEETCCC T ss_pred HHHHHHC T ss_conf 3356400 No 290 >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Probab=70.02 E-value=3.8 Score=17.24 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=17.5 Q ss_pred CEEEEEEECCCCCHHHHHHHHH Q ss_conf 3799997078862578999999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~ 522 (789) -.=+++.|..+.|||+|++-+. T Consensus 11 l~KivvvG~~~vGKTsLi~~~~ 32 (195) T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYT 32 (195) T ss_dssp EEEEEEECSTTSSHHHHHHHHH T ss_pred EEEEEEECCCCCCHHHHHHHHH T ss_conf 9899999999978899999997 No 291 >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Probab=69.76 E-value=1.9 Score=19.24 Aligned_cols=27 Identities=22% Similarity=0.535 Sum_probs=18.5 Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHH Q ss_conf 7598743379999707886257899999 Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l 521 (789) +.+..++-+ +++.|..+.|||+|++-+ T Consensus 16 ~~p~~k~~k-i~ivG~~~vGKTsLi~~l 42 (189) T 2x77_A 16 LLPADRKIR-VLMLGLDNAGKTSILYRL 42 (189) T ss_dssp TSCTTSCEE-EEEEEETTSSHHHHHHHT T ss_pred CCCCCCEEE-EEEECCCCCCHHHHHHHH T ss_conf 588887889-999999998889999999 No 292 >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Probab=69.64 E-value=3.1 Score=17.84 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=18.5 Q ss_pred EEEEECCCCCHHHHHHHHHHHH Q ss_conf 9997078862578999999972 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ll 525 (789) +++.|..+-|||||+|.|..-. T Consensus 165 v~vvG~~NvGKSTLiN~L~~~~ 186 (369) T 3ec1_A 165 VYVVGCTNVGKSTFINRIIEEA 186 (369) T ss_dssp EEEECCTTSSHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHH T ss_conf 9994688735889998775664 No 293 >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Probab=69.62 E-value=3.1 Score=17.84 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=16.3 Q ss_pred EEEEEECCCCCHHHHHHHHH Q ss_conf 99997078862578999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789) =+++.|..+.|||+|++-+. T Consensus 22 Kv~lvG~~~vGKTsLi~rl~ 41 (189) T 1z06_A 22 KIIVIGDSNVGKTCLTYRFC 41 (189) T ss_dssp EEEEECCTTSSHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHH T ss_conf 99999999909999999997 No 294 >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Probab=69.53 E-value=1.3 Score=20.26 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=15.9 Q ss_pred CEEEEEEECCCCCHHHHHHHH Q ss_conf 379999707886257899999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l 521 (789) .+..++.|+.|-|||||+|.| T Consensus 173 ~k~sv~~G~SGVGKSSLiN~L 193 (307) T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAI 193 (307) T ss_dssp TSEEEEEESHHHHHHHHHHHH T ss_pred CCEEEEECCCCCCHHHHHHCC T ss_conf 879999998985588897513 No 295 >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} Probab=69.22 E-value=2 Score=19.08 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.0 Q ss_pred EE-CCCCCHHHHHHHHHHHHCC Q ss_conf 70-7886257899999997233 Q gi|254781225|r 507 RG-VGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 507 ~G-~G~nGKSt~~~~l~~llG~ 527 (789) +| +|.|||||...+|..+|-. T Consensus 111 IaVTGTnGKTTTt~mi~~iL~~ 132 (326) T 3eag_A 111 LGVAGTHGKTTTASMLAWVLEY 132 (326) T ss_dssp EEEESSSCHHHHHHHHHHHHHH T ss_pred EEEECCCCCEEHHHHHHHHHHH T ss_conf 9994689955499999999986 No 296 >2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A* Probab=69.10 E-value=3.6 Score=17.44 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=20.9 Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHH-HHHHHH Q ss_conf 7598743379999707886257899-999997 Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 (789) Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~-~~l~~l 524 (789) |-|+.....+.++.|+.+.|||+|. +++.+. T Consensus 23 l~GGl~~g~~~~i~G~~G~GKT~l~~~~~~~~ 54 (251) T 2ehv_A 23 IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251) T ss_dssp TTTSEETTCEEEEECCTTSSHHHHHHHHHHHH T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH T ss_conf 55898798599999789999899999999999 No 297 >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluorescence, membrane, disease mutation, golgi stack, GTP- binding; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Probab=69.09 E-value=3.4 Score=17.56 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=16.5 Q ss_pred EEEEECCCCCHHHHHHHHHH Q ss_conf 99970788625789999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ 523 (789) +++.|..+.|||+|++-+.. T Consensus 6 v~liG~~~vGKTSll~~l~~ 25 (166) T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166) T ss_dssp EEEEESTTSSHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHH T ss_conf 99999999799999999970 No 298 >1yzq_A Small GTP binding protein RAB6 isoform; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.78A {Homo sapiens} SCOP: c.37.1.8 PDB: 3cwz_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Probab=69.06 E-value=3.6 Score=17.41 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=17.9 Q ss_pred EEEEEEECCCCCHHHHHHHHHH Q ss_conf 7999970788625789999999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ 523 (789) .=+++.|..+.|||+|++-+.. T Consensus 7 ~KI~vvG~~~vGKSsLi~~~~~ 28 (170) T 1yzq_A 7 FKLVFLGEQSVGKTSLITRFMY 28 (170) T ss_dssp CEEEEEESTTSSHHHHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHHH T ss_conf 8999999499799999999983 No 299 >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Probab=69.01 E-value=2.6 Score=18.32 Aligned_cols=10 Identities=10% Similarity=-0.117 Sum_probs=3.3 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254781225|r 482 VMDYFTRCVG 491 (789) Q Consensus 482 ~~~~l~~~~g 491 (789) +++.....++ T Consensus 269 li~~~~~lL~ 278 (363) T 1jal_A 269 VIRAGYALLN 278 (363) T ss_dssp HHHHHHHHTT T ss_pred HHHHHHHHHC T ss_conf 9999998819 No 300 >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Probab=68.98 E-value=1.4 Score=20.03 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.5 Q ss_pred EEEEEEECCCCCHHHHHHHH Q ss_conf 79999707886257899999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l 521 (789) .-+.+.|..+.|||||+|.| T Consensus 27 ~~I~lvG~~nvGKSSLiN~L 46 (210) T 1pui_A 27 IEVAFAGRSNAGKSSALNTL 46 (210) T ss_dssp EEEEEEECTTSSHHHHHTTT T ss_pred CEEEEECCCCCCHHHHHHHH T ss_conf 78999999999899999999 No 301 >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Probab=68.96 E-value=4 Score=17.10 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=26.9 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH Q ss_conf 79999999999999999759874337999970788625789999999 Q gi|254781225|r 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 477 ~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) ++-++.++.+.+++-. +. ......+.++|.||-||||+...+.+ T Consensus 131 ~gr~~~~~~i~~~L~~-~~--~~~~~~v~I~GmgGiGKTtLA~~~~~ 174 (549) T 2a5y_B 131 YIREYHVDRVIKKLDE-MC--DLDSFFLFLHGRAGSGKSVIASQALS 174 (549) T ss_dssp CCCHHHHHHHHHHHHH-HT--TSSSEEEEEECSTTSSHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHH-CC--CCCCCEEEEECCCCCCHHHHHHHHHH T ss_conf 2648999999999984-45--67856699876897886999999999 No 302 >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* Probab=68.90 E-value=4 Score=17.09 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=29.8 Q ss_pred CHHHHHHHHHHHHHHHCCC-----CCCCEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 9999999999999997598-----743379999707886257899999997 Q gi|254781225|r 479 SEEVMDYFTRCVGMALLGG-----NKAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789) Q Consensus 479 d~e~~~~l~~~~g~~l~g~-----~~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789) +++++..+++.+.-.|... ....+.++++|+.|.||+|++-=|.+. T Consensus 78 ~~~~~~~l~~~L~~~l~~~~~~~~~~~~~vI~lvGptGvGKTTtiaKLAa~ 128 (296) T 2px0_A 78 EENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAI 128 (296) T ss_dssp TTTHHHHHHHHHHTTSCCGGGSCCCCCSSEEEEEESTTSSHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH T ss_conf 999999999999987044444434678888999899998889999999999 No 303 >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* 2a5g_A* 2w83_A* Probab=68.39 E-value=3.4 Score=17.54 Aligned_cols=19 Identities=32% Similarity=0.608 Sum_probs=16.1 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 3 i~ivG~~~vGKTsLi~~~~ 21 (164) T 1r8s_A 3 ILMVGLDAAGKTTILYKLK 21 (164) T ss_dssp EEEECSTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999988899999996 No 304 >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Probab=68.38 E-value=4.1 Score=17.02 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.3 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|.++.|||+|++-+. T Consensus 9 i~viG~~~vGKTsli~~~~ 27 (170) T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170) T ss_dssp EEEECSTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999949999999998 No 305 >3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome, procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo sapiens} Probab=68.23 E-value=4.1 Score=17.00 Aligned_cols=10 Identities=0% Similarity=-0.087 Sum_probs=6.1 Q ss_pred CCEEEEEEEC Q ss_conf 9879999646 Q gi|254781225|r 63 QPLYAFDIDS 72 (789) Q Consensus 63 ~glv~iDiD~ 72 (789) ++++++++-. T Consensus 186 ~~~~w~~~~~ 195 (1263) T 3iyt_A 186 GGVHWVSVGK 195 (1263) T ss_dssp TCEEEEEEES T ss_pred CCEEEEEECC T ss_conf 8089999688 No 306 >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* Probab=68.03 E-value=3.2 Score=17.78 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.1 Q ss_pred EEEEEECCCCCHHHHHHHH Q ss_conf 9999707886257899999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l 521 (789) =+++.|..+.|||+|++-+ T Consensus 31 KIvivG~~~vGKSSLi~~l 49 (192) T 2b6h_A 31 RILMVGLDAAGKTTILYKL 49 (192) T ss_dssp EEEEEESTTSSHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHH T ss_conf 9999999998689999999 No 307 >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus} Probab=67.94 E-value=4.2 Score=16.96 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=19.2 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 379999707886257899999997233 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ...+-++|.-++||||+.+.++. +|- T Consensus 75 ~~IIGLTGgigSGKStva~~L~~-~G~ 100 (281) T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN-LGA 100 (281) T ss_dssp CEEEEEEECTTSCHHHHHHHHHH-HTC T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCC T ss_conf 98999878875219999999998-799 No 308 >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Probab=67.76 E-value=3.5 Score=17.46 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.7 Q ss_pred EEEEECCCCCHHHHHHHHHH Q ss_conf 99970788625789999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ 523 (789) +++.|..+.|||+|++-+.. T Consensus 28 IviiG~~~vGKSSLi~~l~~ 47 (193) T 2oil_A 28 VVLIGESGVGKTNLLSRFTR 47 (193) T ss_dssp EEEESSTTSSHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHH T ss_conf 99999999589999999971 No 309 >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Probab=67.73 E-value=2.1 Score=18.96 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=20.1 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHH Q ss_conf 4337999970788625789999999 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) ++..-+.++|..+.|||||+|.|.. T Consensus 241 ~~g~~VaIvG~PNvGKSSL~N~L~g 265 (482) T 1xzp_A 241 NRGLRMVIVGKPNVGKSTLLNRLLN 265 (482) T ss_dssp HHCEEEEEECCHHHHTCHHHHHHHH T ss_pred HCCCEEEEECCCCCCHHHHHHHHHC T ss_conf 5498799989999866899999858 No 310 >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Probab=67.37 E-value=3.9 Score=17.19 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.2 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 29 IvvlG~~~vGKTsLi~~l~ 47 (201) T 2ew1_A 29 IVLIGNAGVGKTCLVRRFT 47 (201) T ss_dssp EEEEESTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999959999999997 No 311 >1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A* Probab=67.22 E-value=3.9 Score=17.21 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=8.8 Q ss_pred EEEEEEECCCCHHHHHHHHHHH Q ss_conf 7999964688125678999876 Q gi|254781225|r 65 LYAFDIDSKDEKTANTFKDTFE 86 (789) Q Consensus 65 lv~iDiD~~d~~~~~~~~~~~~ 86 (789) ++.|=||+.++.+...+.+.+. T Consensus 7 ~lrI~IEG~iGsGKTTl~~~L~ 28 (334) T 1p6x_A 7 IVRIYLDGVYGIGKSTTGRVMA 28 (334) T ss_dssp EEEEEEECSTTSSHHHHHHHHH T ss_pred EEEEEEECCCCCCHHHHHHHHH T ss_conf 4899998887788999999999 No 312 >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Probab=67.22 E-value=3.4 Score=17.59 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=19.0 Q ss_pred CEEEEEEECCCCCHHHHHHHHHH Q ss_conf 37999970788625789999999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) ..-+.+.|..+.|||||+|.|.. T Consensus 179 ~~~ValvG~~NaGKSSLlNaLtg 201 (364) T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTG 201 (364) T ss_dssp CCEEEEECBTTSSHHHHHHHHHC T ss_pred CCEEEEECCCCCCHHHHHHHHHH T ss_conf 97799974556204188642020 No 313 >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Probab=67.14 E-value=3.7 Score=17.33 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=15.7 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|.++.|||+|++-+. T Consensus 8 i~vlG~~~vGKTsli~~~~ 26 (199) T 2f9l_A 8 VVLIGDSGVGKSNLLSRFT 26 (199) T ss_dssp EEEESSTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999959899999998 No 314 >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, disease mutation, mitochondrion, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Probab=67.11 E-value=4.4 Score=16.85 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=20.9 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHH-HHCC Q ss_conf 74337999970788625789999999-7233 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKY-AFGN 527 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~-llG~ 527 (789) +..-.-+=++|+.+.|||||++-+.. +... T Consensus 71 ~~~a~~IGitG~PGaGKStli~~l~~~~~~~ 101 (349) T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349) T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHT T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHC T ss_conf 8870588621799988999999999999847 No 315 >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Probab=66.93 E-value=3.8 Score=17.22 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.8 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +.+.|..+.|||+|++-+. T Consensus 13 I~vlG~~~vGKTSli~~~~ 31 (180) T 2g6b_A 13 VMLVGDSGVGKTCLLVRFK 31 (180) T ss_dssp EEEECSTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999989969899999997 No 316 >2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2} Probab=66.86 E-value=4.4 Score=16.82 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=22.3 Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHH Q ss_conf 7598743379999707886257899999 Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l 521 (789) |-|+.....+.+++|+.+.|||+|+--+ T Consensus 16 l~GGl~~G~~~~i~G~~G~GKT~~~~~~ 43 (235) T 2w0m_A 16 IQGGIPQGFFIALTGEPGTGKTIFSLHF 43 (235) T ss_dssp GTTSEETTCEEEEECSTTSSHHHHHHHH T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHH T ss_conf 5689889859999958998899999999 No 317 >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell membrane, GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Probab=66.62 E-value=4.1 Score=17.03 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.3 Q ss_pred EEEEECCCCCHHHHHHHH Q ss_conf 999707886257899999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l 521 (789) +++.|..+.|||+|++-+ T Consensus 26 I~viG~~~vGKTsLi~rl 43 (191) T 3dz8_A 26 LLIIGNSSVGKTSFLFRY 43 (191) T ss_dssp EEEEESTTSSHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHH T ss_conf 999999992889999999 No 318 >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Probab=66.57 E-value=2.4 Score=18.54 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=8.3 Q ss_pred HHHHHHCCCEEEEEC Q ss_conf 899997798597735 Q gi|254781225|r 10 AKQAIHNGFKLIPLR 24 (789) Q Consensus 10 ~~~~i~~G~~viPi~ 24 (789) |+.+.+.||.|.=-+ T Consensus 29 A~~l~~~G~~V~gsD 43 (469) T 1j6u_A 29 ALHEFSNGNDVYGSN 43 (469) T ss_dssp HHHHHHTTCEEEEEC T ss_pred HHHHHHCCCEEEEEE T ss_conf 999996899699982 No 319 >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=66.46 E-value=4 Score=17.12 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=16.0 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +.+.|..+.|||+|++-+. T Consensus 6 v~ilG~~~vGKSsLi~~l~ 24 (170) T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170) T ss_dssp EEEECSTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999909899999996 No 320 >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Probab=66.33 E-value=4 Score=17.12 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.6 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|.++.|||+|++-+. T Consensus 9 I~vlG~~~vGKSsLi~r~~ 27 (170) T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170) T ss_dssp EEEECCTTSCHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999959999999997 No 321 >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Probab=66.19 E-value=4 Score=17.07 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=15.6 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 6 i~vvG~~~vGKTsli~~~~ 24 (167) T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167) T ss_dssp EEEECSTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999989939999999996 No 322 >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP- binding, coiled coil, cytoplasm, disease mutation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Probab=66.19 E-value=3.4 Score=17.60 Aligned_cols=18 Identities=44% Similarity=0.706 Sum_probs=14.6 Q ss_pred EEEEECCCCCHHHHHHHH Q ss_conf 999707886257899999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l 521 (789) +++.|..+.|||+|++-+ T Consensus 5 ivivG~~~~GKTsli~~~ 22 (184) T 2zej_A 5 LMIVGNTGSGKTTLLQQL 22 (184) T ss_dssp EEEESCTTSSHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHH T ss_conf 999993996889999999 No 323 >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Probab=66.03 E-value=4.6 Score=16.72 Aligned_cols=13 Identities=31% Similarity=0.417 Sum_probs=6.3 Q ss_pred CCCEEEEEECCCC Q ss_conf 8980999934677 Q gi|254781225|r 557 MGSRIVIISETNE 569 (789) Q Consensus 557 ~g~r~~~~~E~~~ 569 (789) ...-++++.|.+. T Consensus 249 ~~~~~~~~~eidk 261 (444) T 1g41_A 249 EQNGIVFIDEIDK 261 (444) T ss_dssp HHHCEEEEETGGG T ss_pred HHCCCCCCCHHHH T ss_conf 7648766412455 No 324 >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Probab=65.87 E-value=2.9 Score=18.00 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=18.1 Q ss_pred CCCEEEEEEECCCCCHHHHHHHH Q ss_conf 43379999707886257899999 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l 521 (789) ..+.=+++.|..+.|||+|++-+ T Consensus 163 ~k~~kIvliG~~~vGKSSLl~rl 185 (329) T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKL 185 (329) T ss_dssp CCSEEEEEEESTTSSHHHHHHHT T ss_pred CCCEEEEEECCCCCCHHHHHHHH T ss_conf 98129999999998599999999 No 325 >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3} Probab=65.86 E-value=4.6 Score=16.70 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=21.9 Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHH-HHHHHH Q ss_conf 75987433799997078862578999-999972 Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMN-LIKYAF 525 (789) Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~-~l~~ll 525 (789) |-|+...-.+.+++|+.+.|||+|.- ++.+.+ T Consensus 16 l~GGi~~G~~~~i~G~~GsGKT~l~l~l~~~~~ 48 (247) T 2dr3_A 16 LHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247) T ss_dssp TTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH T ss_conf 468997983999997899889999999999998 No 326 >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=65.74 E-value=2.6 Score=18.37 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=19.4 Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHH Q ss_conf 7598743379999707886257899999 Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l 521 (789) +.+..+ +.=+++.|..+.|||+|++-+ T Consensus 12 ~~~~~k-~~Ki~lvG~~~vGKTsLi~~l 38 (183) T 1moz_A 12 LWGSNK-ELRILILGLDGAGKTTILYRL 38 (183) T ss_dssp GTTCSS-CEEEEEEEETTSSHHHHHHHT T ss_pred HHCCCC-EEEEEEECCCCCCHHHHHHHH T ss_conf 717896-789999999999889999798 No 327 >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Probab=65.57 E-value=4.1 Score=17.00 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=15.7 Q ss_pred EEEEEECCCCCHHHHHHHHH Q ss_conf 99997078862578999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789) =+++.|..+.|||+|++-+. T Consensus 30 Ki~v~G~~~vGKTsLi~~~~ 49 (199) T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLC 49 (199) T ss_dssp EEEEESSTTSSHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHH T ss_conf 99999999979899999996 No 328 >3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Probab=65.42 E-value=4.7 Score=16.64 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=20.4 Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 5987433799997078862578999999 Q gi|254781225|r 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 495 ~g~~~~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) .+....+.-+++.|..+.|||+|++-+. T Consensus 316 ~~~~~~~~ki~ivG~~~vGKTsli~~l~ 343 (497) T 3lvq_E 316 EGLSNKEMRILMLGLDAAGKTTILYKLK 343 (497) T ss_dssp ----CCEEEEEEECSTTSSHHHHHHHHH T ss_pred HCCCCCCEEEEEECCCCCCCHHHHHHHH T ss_conf 3346553189998988777333212120 No 329 >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Probab=65.06 E-value=4.4 Score=16.84 Aligned_cols=20 Identities=40% Similarity=0.464 Sum_probs=16.3 Q ss_pred EEEEECCCCCHHHHHHHHHH Q ss_conf 99970788625789999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ 523 (789) +++.|..+.|||+|++-+.. T Consensus 18 I~v~G~~~vGKTsli~~~~~ 37 (195) T 1x3s_A 18 ILIIGESGVGKSSLLLRFTD 37 (195) T ss_dssp EEEECSTTSSHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHC T ss_conf 99999999698999999973 No 330 >3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} Probab=64.70 E-value=3.4 Score=17.55 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=5.0 Q ss_pred EEEEEEEEEC Q ss_conf 6646899965 Q gi|254781225|r 623 WWRRYIVIPF 632 (789) Q Consensus 623 ~~rR~~iipF 632 (789) +-...++|.| T Consensus 357 ~~~~~L~i~F 366 (374) T 3igf_A 357 FQNNYLIISF 366 (374) T ss_dssp EETTEEEEEE T ss_pred EECCEEEEEE T ss_conf 9899999998 No 331 >2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A* Probab=64.68 E-value=2.3 Score=18.68 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=4.6 Q ss_pred EEEECCCEEEE Q ss_conf 45415985873 Q gi|254781225|r 579 KQMTGGDCMTA 589 (789) Q Consensus 579 K~ltggD~i~a 589 (789) +.+..||.|-. T Consensus 427 ~~~~~gDvVLi 437 (454) T 2am1_A 427 ESLGAHDQILL 437 (454) T ss_dssp HHCCTTEEEEE T ss_pred HHCCCCCEEEE T ss_conf 63799998999 No 332 >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Probab=64.68 E-value=4.1 Score=17.01 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=15.4 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 6 I~v~G~~~vGKTsLi~~~~ 24 (172) T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172) T ss_dssp EEEECCTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999989999999996 No 333 >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ protein, ATP-binding, DNA-binding; 4.35A {Sulfolobus solfataricus} Probab=64.37 E-value=0.8 Score=21.73 Aligned_cols=129 Identities=17% Similarity=0.225 Sum_probs=68.7 Q ss_pred HHHHHHHHHHCCCC---------CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC---CHHHHHH--CCCCCCC--C Q ss_conf 99999999975987---------43379999707886257899999997233000344---2676420--1245555--6 Q gi|254781225|r 485 YFTRCVGMALLGGN---------KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA---EASDIMQ--NRPPEAG--K 548 (789) Q Consensus 485 ~l~~~~g~~l~g~~---------~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~---~~~~~~~--~~~~~~~--~ 548 (789) .+...+-.+|.|.. +....+++.|.-+.|||.+++.+..+......++. +..-++. .+....| . T Consensus 302 ~vK~allL~l~~g~~~~~~~~~~r~~~~ill~Gd~~~~ks~ll~~~~~l~p~~~~~~~~~~~~~gl~~~~~~~~~~~~~~ 381 (595) T 3f9v_A 302 ELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYY 381 (595) T ss_dssp HHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCS T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEEECCCCCEE T ss_conf 79999999983898535788766774246652687530889999998757875521798777667630589842677445 Q ss_pred CCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCC Q ss_conf 8988997389809999346777601310024541598587321047860687145289997388634 Q gi|254781225|r 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 (789) Q Consensus 549 ~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~ 615 (789) ..+...-+.....+.++|.+.-....-+.|.+..-...++..+. +.. .++.-.+.++.++|-.+. T Consensus 382 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~eamE~~~isi~k~-g~~-~~l~~~~~iiaa~NP~~~ 446 (595) T 3f9v_A 382 LEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKA-GIV-AKLNARAAVIAAGNPKFG 446 (595) T ss_dssp EEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESS-SSE-EEECCCCEEEEEECCTTC T ss_pred ECCCHHHCCCCCCEEHHHHHHCCHHHHHHHHHHHHHEEEEECCC-CEE-EEECCCEEEEEECCCCCC T ss_conf 33640100345630100375527778999998765118997266-517-874797699996378755 No 334 >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Probab=64.22 E-value=4.9 Score=16.50 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=17.6 Q ss_pred CCEEEEEEECCCCCHHHHHHHHH Q ss_conf 33799997078862578999999 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) .+.=+++.|..+.|||+|++-+. T Consensus 5 r~~Ki~vvG~~~vGKSSli~~~~ 27 (170) T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFV 27 (170) T ss_dssp EEEEEEEECCTTSSHHHHHHHHH T ss_pred CEEEEEEECCCCCCHHHHHHHHH T ss_conf 68799999979968999999998 No 335 >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 1xcg_B 1tx4_B* 1kmq_A* 1dpf_A* ... Probab=64.14 E-value=4.9 Score=16.53 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.3 Q ss_pred EEEEEECCCCCHHHHHHHHH Q ss_conf 99997078862578999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789) =+++.|..+.|||+|++-+. T Consensus 27 KvvvlG~~~vGKTsLi~r~~ 46 (201) T 2gco_A 27 KLVIVGDGACGKTCLLIVFS 46 (201) T ss_dssp EEEEEESTTSSHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHH T ss_conf 89999999979899999996 No 336 >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Probab=64.02 E-value=4.7 Score=16.63 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=21.3 Q ss_pred HHHHCCCCCCC-EEEEEEECCCCCHHHHHHHHHH Q ss_conf 99975987433-7999970788625789999999 Q gi|254781225|r 491 GMALLGGNKAQ-RFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 491 g~~l~g~~~~~-~~~~~~G~G~nGKSt~~~~l~~ 523 (789) +..|.++..+- .=+++.|..+.|||+|++-+.. T Consensus 11 ~~~~~p~~~~~~~KIvvvG~~~vGKTsLi~~~~~ 44 (189) T 2gf9_A 11 SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYAD 44 (189) T ss_dssp ---CCCTTCSEEEEEEEECSTTSSHHHHHHHHHH T ss_pred CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHC T ss_conf 6899998877478999999999698999889864 No 337 >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Probab=63.67 E-value=3.3 Score=17.68 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=14.2 Q ss_pred EEEEECCCCCHHHHHHH Q ss_conf 99970788625789999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNL 520 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~ 520 (789) +++.|.++.|||+|++- T Consensus 26 i~viG~~~vGKSsLi~~ 42 (195) T 3cbq_A 26 VMLVGESGVGKSTLAGT 42 (195) T ss_dssp EEEECSTTSSHHHHHHH T ss_pred EEEECCCCCCHHHHHHH T ss_conf 99998999799999999 No 338 >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560} Probab=63.67 E-value=4.5 Score=16.74 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=21.5 Q ss_pred CCEEEEEE-ECCCCCHHHHHHHHHHHHCC Q ss_conf 33799997-07886257899999997233 Q gi|254781225|r 500 AQRFIHIR-GVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 500 ~~~~~~~~-G~G~nGKSt~~~~l~~llG~ 527 (789) -++++|.+ |+-|+||||+...|..-||= T Consensus 4 mk~~iI~I~g~~GsGKstiak~LA~~Lg~ 32 (201) T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLAEHYNI 32 (201) T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHTTC T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHCC T ss_conf 87458986699999869999999999599 No 339 >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Probab=63.59 E-value=4.8 Score=16.60 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.7 Q ss_pred CEEEEEEECCCCCHHHHH Q ss_conf 379999707886257899 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLM 518 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~ 518 (789) -..+.+.|+.+.||||+. T Consensus 34 g~~v~i~G~SG~GKStl~ 51 (205) T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205) T ss_dssp TEEEEEECCCTTTTHHHH T ss_pred CEEEEEECCCCCCHHHHH T ss_conf 999999828999989999 No 340 >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Probab=63.58 E-value=4.6 Score=16.69 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=19.4 Q ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 5987433799997078862578999999 Q gi|254781225|r 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 495 ~g~~~~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) .|....+.=+++.|..+.|||+|++-+. T Consensus 9 ~~~p~~~fKIvlvG~~~vGKTsLi~~~~ 36 (221) T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHL 36 (221) T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBH T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHH T ss_conf 7898706899999999949899999997 No 341 >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2ke5_A* Probab=63.46 E-value=4.9 Score=16.52 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=14.8 Q ss_pred EEEEECCCCCHHHHHHHH Q ss_conf 999707886257899999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l 521 (789) +++.|..+.|||+|++-+ T Consensus 7 I~iiG~~~vGKSsli~~~ 24 (168) T 1u8z_A 7 VIMVGSGGVGKSALTLQF 24 (168) T ss_dssp EEEECSTTSSHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHH T ss_conf 999998998889999999 No 342 >1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1 Probab=63.40 E-value=2.9 Score=18.07 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=10.9 Q ss_pred CHHHHHHHHHHHHHHHHHC Q ss_conf 0447999999999999987 Q gi|254781225|r 651 YTLEAKKWFLKGVKAYISK 669 (789) Q Consensus 651 e~~~i~~w~l~g~~~~~~~ 669 (789) +.+.+..|+|.++..-+.+ T Consensus 303 ~~~~~~~w~l~~l~~~l~~ 321 (376) T 1of1_A 303 DLYNVFAWALDVLAKRLRS 321 (376) T ss_dssp CBCHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 8177799999999998864 No 343 >2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} Probab=63.01 E-value=5.2 Score=16.35 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=7.9 Q ss_pred EEEEECCCEEEEEEC Q ss_conf 245415985873210 Q gi|254781225|r 578 IKQMTGGDCMTARLN 592 (789) Q Consensus 578 ~K~ltggD~i~ar~~ 592 (789) ++.+--||.|-.-.+ T Consensus 489 ~~~a~~gDvVLv~G~ 503 (535) T 2wtz_A 489 VAWARPGDVVLIAGK 503 (535) T ss_dssp HHHCCTTCEEEEESC T ss_pred HHHCCCCCEEEECCC T ss_conf 983899999998378 No 344 >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Probab=62.95 E-value=3.2 Score=17.77 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=5.7 Q ss_pred HHHHHHCCCEEEE Q ss_conf 8999977985977 Q gi|254781225|r 10 AKQAIHNGFKLIP 22 (789) Q Consensus 10 ~~~~i~~G~~viP 22 (789) |+.+.+.|+.|.= T Consensus 36 A~~l~~~G~~V~g 48 (491) T 2f00_A 36 AEVLANEGYQISG 48 (491) T ss_dssp HHHHHHTTCEEEE T ss_pred HHHHHHCCCEEEE T ss_conf 9999968993999 No 345 >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Probab=62.94 E-value=5.2 Score=16.34 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=20.7 Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 75987433799997078862578999999 Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) |-|......+.++.|+.+.|||+|.--+. T Consensus 17 l~GGi~~G~~~~i~G~~GsGKT~l~lq~~ 45 (243) T 1n0w_A 17 LQGGIETGSITEMFGEFRTGKTQICHTLA 45 (243) T ss_dssp TTTSEETTSEEEEECCTTSSHHHHHHHHH T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHH T ss_conf 26998599799999189999899999999 No 346 >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Probab=62.92 E-value=5.1 Score=16.41 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=16.6 Q ss_pred EEEEECCCCCHHHHHHHHHH Q ss_conf 99970788625789999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ 523 (789) +++.|..+.|||+|++-+.. T Consensus 24 I~vlG~~~vGKTSLi~~~~~ 43 (190) T 3con_A 24 LVVVGAGGVGKSALTIQLIQ 43 (190) T ss_dssp EEEECSTTSSHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHC T ss_conf 99999999199999999972 No 347 >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Probab=62.84 E-value=4.7 Score=16.65 Aligned_cols=19 Identities=42% Similarity=0.628 Sum_probs=15.5 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|.++-|||+|++.+. T Consensus 40 IvlvG~~~vGKSsLi~r~~ 58 (211) T 2g3y_A 40 VVLIGEQGVGKSTLANIFA 58 (211) T ss_dssp EEEECCTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999969988899999998 No 348 >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GDP-binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Probab=62.33 E-value=5.3 Score=16.30 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=15.4 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 21 I~lvG~~~vGKTSli~r~~ 39 (187) T 2a9k_A 21 VIMVGSGGVGKSALTLQFM 39 (187) T ss_dssp EEEECSTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999969988999999997 No 349 >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Probab=62.30 E-value=5.3 Score=16.32 Aligned_cols=21 Identities=33% Similarity=0.243 Sum_probs=16.3 Q ss_pred EEEEEEECCCCCHHHHHHHHH Q ss_conf 799997078862578999999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~ 522 (789) .=+++.|..+.|||+|++-+. T Consensus 21 ~KI~vvG~~~vGKTsLi~r~~ 41 (184) T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYL 41 (184) T ss_dssp EEEEEECCTTSCHHHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHH T ss_conf 799999959987899999998 No 350 >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Probab=62.30 E-value=3.3 Score=17.68 Aligned_cols=15 Identities=20% Similarity=-0.026 Sum_probs=9.7 Q ss_pred HHHHHHCCCEEEEEC Q ss_conf 899997798597735 Q gi|254781225|r 10 AKQAIHNGFKLIPLR 24 (789) Q Consensus 10 ~~~~i~~G~~viPi~ 24 (789) |+-+.+.||.|.=-+ T Consensus 36 A~~l~~~G~~V~gsD 50 (524) T 3hn7_A 36 ALLARALGHTVTGSD 50 (524) T ss_dssp HHHHHHTTCEEEEEE T ss_pred HHHHHHCCCEEEEEE T ss_conf 999996889699990 No 351 >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Probab=62.20 E-value=5.2 Score=16.37 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=15.7 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 28 I~vlG~~~vGKTSLi~rl~ 46 (200) T 2o52_A 28 FLVIGSAGTGKSCLLHQFI 46 (200) T ss_dssp EEEEESTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999957928999999998 No 352 >1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* 1e2l_A* ... Probab=62.17 E-value=2.4 Score=18.53 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=9.0 Q ss_pred CHHHHHHHHHHHHHHHHHC Q ss_conf 0447999999999999987 Q gi|254781225|r 651 YTLEAKKWFLKGVKAYISK 669 (789) Q Consensus 651 e~~~i~~w~l~g~~~~~~~ 669 (789) +.+.+..|++.++..-.++ T Consensus 258 ~~~~~~~~~~~~l~~~l~~ 276 (331) T 1e2k_A 258 DLYNVFAWALDVLAKRLRS 276 (331) T ss_dssp CBCHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 8177799999999998864 No 353 >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Probab=61.96 E-value=5.4 Score=16.23 Aligned_cols=29 Identities=31% Similarity=0.285 Sum_probs=22.6 Q ss_pred HHCCCCCCCEEEEEEECCCCCHHHHHHHH Q ss_conf 97598743379999707886257899999 Q gi|254781225|r 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 493 ~l~g~~~~~~~~~~~G~G~nGKSt~~~~l 521 (789) .|-|.........++|+.+.|||+|.--+ T Consensus 12 ll~GGl~~g~i~li~G~~GsGKT~lal~~ 40 (220) T 2cvh_A 12 LLGGGFAPGVLTQVYGPYASGKTTLALQT 40 (220) T ss_dssp HTTSSBCTTSEEEEECSTTSSHHHHHHHH T ss_pred HHCCCCCCCEEEEEEECCCCCHHHHHHHH T ss_conf 32699738869999979998499999999 No 354 >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A Probab=61.84 E-value=5.1 Score=16.41 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=20.5 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCC Q ss_conf 79999707886257899999997233 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGN 527 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~ 527 (789) ..+-+.|..++||+||+.-|-..|-. T Consensus 7 pii~ivG~~~SGKTTLi~~li~~L~~ 32 (174) T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174) T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 27999906999899999999999997 No 355 >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Probab=61.78 E-value=5 Score=16.45 Aligned_cols=22 Identities=41% Similarity=0.368 Sum_probs=15.7 Q ss_pred EEEEEEECCCCCHHHHHHHHHH Q ss_conf 7999970788625789999999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~ 523 (789) .-+-+.|..+.|||||+|.|.. T Consensus 181 ~~iaiiGrPNvGKStL~N~L~g 202 (439) T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILN 202 (439) T ss_dssp EEEEEECSTTSSHHHHHHHHHT T ss_pred EEEEEECCCCCCHHHHHHHHHC T ss_conf 2699973898868999999849 No 356 >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Probab=61.55 E-value=5.5 Score=16.18 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.3 Q ss_pred EEEEEECCCCCHHHHHHHHH Q ss_conf 99997078862578999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789) =+++.|..+-|||+|++-+. T Consensus 10 KivvvG~~~vGKTsli~r~~ 29 (182) T 3bwd_D 10 KCVTVGDGAVGKTCLLISYT 29 (182) T ss_dssp EEEEECSTTSSHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHH T ss_conf 99999979979899999997 No 357 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 Probab=61.47 E-value=5.5 Score=16.17 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=7.6 Q ss_pred EEEEEEECCCCHHHHHHHHHH Q ss_conf 799996468812567899987 Q gi|254781225|r 65 LYAFDIDSKDEKTANTFKDTF 85 (789) Q Consensus 65 lv~iDiD~~d~~~~~~~~~~~ 85 (789) ++-|=||+.++.+...+.+.+ T Consensus 12 ~lrI~iEG~~GsGKTT~~~~L 32 (341) T 1osn_A 12 VLRIYLDGAYGIGKTTAAEEF 32 (341) T ss_dssp EEEEEEEESSSSCTTHHHHHH T ss_pred CEEEEEECCCCCCHHHHHHHH T ss_conf 659999888678899999999 No 358 >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Probab=61.11 E-value=5.6 Score=16.15 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=15.7 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|.++.|||+|++-+. T Consensus 16 ivviG~~~vGKTsLi~r~~ 34 (223) T 3cpj_B 16 IVLIGDSGVGKSNLLSRFT 34 (223) T ss_dssp EEEESCTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999969999999997 No 359 >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome dynamics; HET: GDP; 2.5A {Homo sapiens} Probab=61.09 E-value=5.5 Score=16.19 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=16.6 Q ss_pred CEEEEEEECCCCCHHHHHHHH Q ss_conf 379999707886257899999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l 521 (789) ..=+++.|..+.|||+|++-+ T Consensus 34 ~iKI~vvG~~~vGKTSLi~r~ 54 (214) T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVF 54 (214) T ss_dssp EEEEEEEECTTSSHHHHHHHH T ss_pred EEEEEEECCCCCCHHHHHHHH T ss_conf 789999999997899999999 No 360 >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 2.07A {Thermus thermophilus HB8} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Probab=61.05 E-value=4 Score=17.11 Aligned_cols=15 Identities=33% Similarity=0.193 Sum_probs=7.5 Q ss_pred EEEECCCCEE-EECCC Q ss_conf 3485268438-80477 Q gi|254781225|r 126 LDILGCGQYF-VAYNI 140 (789) Q Consensus 126 iEi~~~G~q~-V~~gs 140 (789) .|+...|+.+ |+.|- T Consensus 104 ~d~~~~~~~~~~~~gg 119 (416) T 1udx_A 104 ADLTEEGQTVLVARGG 119 (416) T ss_dssp EEECSTTCEEEEECCC T ss_pred EEECCCCCEEEEECCC T ss_conf 9935799599996479 No 361 >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Probab=60.99 E-value=5.2 Score=16.36 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=16.2 Q ss_pred EEEEEEECCCCCHHHHHHHHH Q ss_conf 799997078862578999999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~ 522 (789) .=+++.|..+.|||+|++-+. T Consensus 26 iKI~ivG~~~vGKTsLi~rl~ 46 (217) T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYT 46 (217) T ss_dssp EEEEEESCTTSSHHHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHH T ss_conf 799999979979899999996 No 362 >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Probab=60.93 E-value=5.6 Score=16.13 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=32.3 Q ss_pred CCCCCCCCCHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 78888757947899999888799------9999999999999975987433799997078862578999999 Q gi|254781225|r 457 GTPFVEGEPSQEFLDLVSGYFES------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 457 ~~~y~~~a~~p~~~~~l~~~~~d------~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) .++..+......|.+++...... .+.+..+.+.+ .- .+ ..-+++.|-.+-||||++|.|. T Consensus 55 K~DL~~~~~~~~w~~~~~~~~~~~i~~~~~~~~~~l~~~~----~~-~~-~~~i~vvG~PNVGKSslIN~L~ 120 (262) T 3cnl_A 55 KVDIADEKTTKKWVEFFKKQGKRVITTHKGEPRKVLLKKL----SF-DR-LARVLIVGVPNTGKSTIINKLK 120 (262) T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH----CC-CT-TCEEEEEESTTSSHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH----HC-CC-CCEEEEECCCCCCHHHHHHHHH T ss_conf 8877998999999998743597578840553589999986----02-67-7479997788755899999985 No 363 >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Probab=60.76 E-value=5 Score=16.45 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=15.7 Q ss_pred EEEEEECCCCCHHHHHHHH Q ss_conf 9999707886257899999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l 521 (789) =+++.|..+.|||+|++-+ T Consensus 28 KIvvlG~~~vGKTSli~rl 46 (192) T 2il1_A 28 QVIIIGSRGVGKTSLMERF 46 (192) T ss_dssp EEEEECSTTSSHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHH T ss_conf 9999999997999999999 No 364 >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Probab=60.44 E-value=5.7 Score=16.06 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=15.7 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 23 i~vvG~~~vGKTSLi~~~~ 41 (213) T 3cph_A 23 ILLIGDSGVGKSCLLVRFV 41 (213) T ss_dssp EEEECSTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999978999999997 No 365 >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Probab=60.35 E-value=3.7 Score=17.34 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=6.1 Q ss_pred EEEECCCCEE-EECCC Q ss_conf 3485268438-80477 Q gi|254781225|r 126 LDILGCGQYF-VAYNI 140 (789) Q Consensus 126 iEi~~~G~q~-V~~gs 140 (789) .|+...|+.+ ||.|- T Consensus 105 ~dl~~~~~~~~~a~Gg 120 (342) T 1lnz_A 105 ADLTEHGQRAVIARGG 120 (342) T ss_dssp EEECSTTCEEEEECCC T ss_pred EECCCCCCEEEEECCC T ss_conf 8705699489996078 No 366 >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Probab=60.22 E-value=5.6 Score=16.13 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=14.8 Q ss_pred EEEEECCCCCHHHHHHHH Q ss_conf 999707886257899999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l 521 (789) +++.|..+.|||+|++-+ T Consensus 11 i~vlG~~~vGKSsLi~r~ 28 (203) T 1zbd_A 11 ILIIGNSSVGKTSFLFRY 28 (203) T ss_dssp EEEECSTTSSHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHH T ss_conf 999998990989999999 No 367 >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A Probab=59.97 E-value=5.9 Score=16.00 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=5.8 Q ss_pred HHHHHHHHHCCCC Q ss_conf 9999999987889 Q gi|254781225|r 660 LKGVKAYISKGLD 672 (789) Q Consensus 660 l~g~~~~~~~g~~ 672 (789) ++-+..+.+.|.. T Consensus 484 ~~~v~~~~~~g~~ 496 (624) T 2gk6_A 484 EKITTKLLKAGAK 496 (624) T ss_dssp HHHHHHHHTTTCC T ss_pred HHHHHHHHHCCCC T ss_conf 9999999973999 No 368 >1xtq_A GTP-binding protein RHEB; beta saddle, P-loop, signaling protein; HET: GDP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtr_A* 1xts_A* Probab=59.86 E-value=5.9 Score=15.99 Aligned_cols=20 Identities=35% Similarity=0.292 Sum_probs=16.0 Q ss_pred EEEEEECCCCCHHHHHHHHH Q ss_conf 99997078862578999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789) =+++.|..+.|||+|++-+. T Consensus 8 KI~viG~~~vGKSsLi~~~~ 27 (177) T 1xtq_A 8 KIAILGYRSVGKSSLTIQFV 27 (177) T ss_dssp EEEEEESTTSSHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHH T ss_conf 99999989909899999997 No 369 >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* Probab=59.52 E-value=5.1 Score=16.43 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=20.4 Q ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 99999975987433799997078862578999999972330003 Q gi|254781225|r 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 (789) Q Consensus 488 ~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~ 531 (789) +-.+-++.+...-+.+ +-+...+.+ ..+.+..++|.+-+. T Consensus 327 ~~~a~~i~~n~~t~i~--~~~~~~d~~--ta~~~s~~lG~~~v~ 366 (437) T 1e9r_A 327 VKEAQTLRASFRSLVV--LGGSRTDPK--TNEDMSLSLGEHEVE 366 (437) T ss_dssp HHHHHHHHTTCCEEEE--EECCTTCHH--HHHHHHHHHCEEEEE T ss_pred HHHHHHHHHHCCCEEE--ECCCCCCHH--HHHHHHHHHCCEEEE T ss_conf 8899999974787799--617999989--999999972987999 No 370 >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Probab=59.51 E-value=6 Score=15.95 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=17.1 Q ss_pred CEEEEEEECCCCCHHHHHHHHH Q ss_conf 3799997078862578999999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~ 522 (789) ++=+++.|..+.|||+|+.-+. T Consensus 7 ~~KivvvGd~~vGKTsLi~r~~ 28 (184) T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFA 28 (184) T ss_dssp EEEEEEEESTTSSHHHHHHHHH T ss_pred EEEEEEECCCCCCHHHHHHHHH T ss_conf 2699999989979999999997 No 371 >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Probab=59.40 E-value=6 Score=15.94 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.1 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 21 iviiG~~~vGKTsli~r~~ 39 (194) T 2atx_A 21 CVVVGDGAVGKTCLLMSYA 39 (194) T ss_dssp EEEEECTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999979999999996 No 372 >1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Probab=59.31 E-value=6 Score=15.93 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=11.4 Q ss_pred EEEEECCCEEEEEECCCCCC Q ss_conf 24541598587321047860 Q gi|254781225|r 578 IKQMTGGDCMTARLNYGNTY 597 (789) Q Consensus 578 ~K~ltggD~i~ar~~~~~~~ 597 (789) ++.+.-||.|-.-++.-+.| T Consensus 451 ~~~a~~gDvVLi~G~G~e~~ 470 (498) T 1e8c_A 451 VMQAKENDVVLVAGKGHEDY 470 (498) T ss_dssp HHHSCTTCEEEEESCTTCCE T ss_pred HHHCCCCCEEEEECCCCCCE T ss_conf 98489989999947888784 No 373 >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Probab=59.25 E-value=6 Score=15.92 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=17.1 Q ss_pred CEE-EEEEECCCCCHHHHHHHHH Q ss_conf 379-9997078862578999999 Q gi|254781225|r 501 QRF-IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 501 ~~~-~~~~G~G~nGKSt~~~~l~ 522 (789) ..| +++.|..+.|||+|++-+. T Consensus 13 ~~~KIviiG~~~vGKTsli~r~~ 35 (206) T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFM 35 (206) T ss_dssp CEEEEEEECSTTSSHHHHHHHHH T ss_pred CEEEEEEECCCCCCHHHHHHHHH T ss_conf 33799999989988999999996 No 374 >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Probab=58.70 E-value=6.1 Score=15.86 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=16.5 Q ss_pred CEEEEEEECCCCCHHHHHHHH Q ss_conf 379999707886257899999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l 521 (789) ++=+++.|..+.|||+|++-+ T Consensus 28 ~~KIviiGd~~vGKTsLi~r~ 48 (205) T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVF 48 (205) T ss_dssp EEEEEEEESTTSSHHHHHHHH T ss_pred CEEEEEECCCCCCHHHHHHHH T ss_conf 479999998997899999999 No 375 >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 Probab=58.53 E-value=3.2 Score=17.79 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=15.3 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 11 I~vlG~~~vGKTSli~~~~ 29 (183) T 2fu5_C 11 LLLIGDSGVGKTCVLFRFS 29 (183) T ss_dssp EEEECCCCC---------- T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999938899999997 No 376 >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP binding protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Probab=58.15 E-value=6.3 Score=15.80 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=14.5 Q ss_pred EEEEECCCCCHHHHHHHH Q ss_conf 999707886257899999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l 521 (789) +++.|..+.|||+|++-+ T Consensus 7 i~vvG~~~vGKTsLi~~~ 24 (175) T 2nzj_A 7 VVLLGDPGVGKTSLASLF 24 (175) T ss_dssp EEEECCTTSSHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHH T ss_conf 999999996989999999 No 377 >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 1x1r_A* 1x1s_A* Probab=57.79 E-value=6.4 Score=15.76 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=16.8 Q ss_pred EEEEEECCCCCHHHHHHHHHH Q ss_conf 999970788625789999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~ 523 (789) =+++.|..+.|||+|++-+.. T Consensus 20 Ki~lvG~~~vGKTsli~r~~~ 40 (183) T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183) T ss_dssp EEEEECSTTSSHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHC T ss_conf 999999899688999999964 No 378 >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Probab=57.56 E-value=6.4 Score=15.74 Aligned_cols=19 Identities=47% Similarity=0.674 Sum_probs=15.3 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 10 I~v~G~~~vGKTsli~~~~ 28 (177) T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177) T ss_dssp EEEECCTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999989989999999998 No 379 >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Probab=57.16 E-value=6.5 Score=15.69 Aligned_cols=19 Identities=37% Similarity=0.382 Sum_probs=15.8 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 24 I~vvG~~~vGKTSLi~rl~ 42 (191) T 2a5j_A 24 YIIIGDTGVGKSCLLLQFT 42 (191) T ss_dssp EEEESSTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999989979999999984 No 380 >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Probab=57.06 E-value=6.5 Score=15.68 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=16.2 Q ss_pred EEEEEECCCCCHHHHHHHHH Q ss_conf 99997078862578999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789) =+++.|..+.|||+|++-+. T Consensus 27 KIlviG~~~vGKSSLi~r~~ 46 (207) T 2fv8_A 27 KLVVVGDGACGKTCLLIVFS 46 (207) T ss_dssp EEEEEECTTSSHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHH T ss_conf 89999999978999999997 No 381 >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Probab=57.05 E-value=6.5 Score=15.68 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=52.9 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCC----CCCCCHHHHHHCCCC--CCCCCCHHHHHH-CCCEEEEEECCCCCCCCCC Q ss_conf 999970788625789999999723300----034426764201245--555689889973-8980999934677760131 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFGNQY----VINAEASDIMQNRPP--EAGKANPSLIRL-MGSRIVIISETNENDEINA 575 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG~~~----~~~~~~~~~~~~~~~--~~~~~~~~la~l-~g~r~~~~~E~~~~~~~~~ 575 (789) -+++||+.|.|||-|+..|.+-+-..+ +...+...+...... ..+.......+. ...-+.++++...- T Consensus 132 Pl~IyG~~G~GKTHLL~Ai~n~~~~~~~~~~v~y~t~e~f~~~~~~~~~~~~~~~~~~~~~r~~DvLliDDiq~l----- 206 (440) T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFL----- 206 (440) T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGG----- T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEECCCHHHH----- T ss_conf 579980899867899999999999729971021023999888888753123358999985420452110227765----- Q ss_pred CEEEEEECCCEEEEEECCCCCCEE-EECCEEEEEECCCCCC-CCCCCCCEEEEEE Q ss_conf 002454159858732104786068-7145289997388634-2679841664689 Q gi|254781225|r 576 AKIKQMTGGDCMTARLNYGNTYSE-SPASFTPFIVPNKHLF-VRNPDDAWWRRYI 628 (789) Q Consensus 576 ~~~K~ltggD~i~ar~~~~~~~~~-~~p~~~~~~~~N~~P~-~~~~d~~~~rR~~ 628 (789) .|.+.. -+..+ .-|.. ......+++++...|. +.+.+.-+..|+. T Consensus 207 ------~gk~~t-qeelf-~~fN~l~~~gkqIvitsd~~P~~l~~l~~rL~SRf~ 253 (440) T 2z4s_A 207 ------IGKTGV-QTELF-HTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ 253 (440) T ss_dssp ------SSCHHH-HHHHH-HHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH T ss_pred ------CCCHHH-HHHHH-HHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHH T ss_conf ------277789-99999-999999863985999689895663362378888986 No 382 >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Probab=56.89 E-value=6.6 Score=15.67 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.7 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+-|||+|++-+. T Consensus 32 ivvvG~~~vGKTSLi~rl~ 50 (201) T 2hup_A 32 LVLVGDASVGKTCVVQRFK 50 (201) T ss_dssp EEEEECTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999999908999999996 No 383 >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Probab=56.81 E-value=6.6 Score=15.66 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.3 Q ss_pred CEEEEEEECCCCCHHHHHHHHH Q ss_conf 3799997078862578999999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~ 522 (789) +.=+.+.|.++.|||+|++-+. T Consensus 23 ~~KI~vvG~~~vGKTSLi~~~~ 44 (192) T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFV 44 (192) T ss_dssp EEEEEEEECTTSSHHHHHHHHH T ss_pred EEEEEEECCCCCCHHHHHHHHH T ss_conf 7799999989989999999997 No 384 >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Probab=56.20 E-value=6.8 Score=15.59 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=15.7 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 6 v~vvG~~~vGKTsli~r~~ 24 (167) T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167) T ss_dssp EEEECCTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999979959999999997 No 385 >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Probab=55.99 E-value=6.8 Score=15.59 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=17.7 Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 799997078862578999999972330 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) .-+-+.|-.+.|||||+|.| +|+. T Consensus 176 ~~iaiiGrpN~GKStl~N~l---l~~~ 199 (436) T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAM---LGEE 199 (436) T ss_dssp EEEEEECSTTSSHHHHHHHH---HTST T ss_pred CEEEEECCCCCCHHHHHHHH---HCCC T ss_conf 47999869988789888787---2797 No 386 >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Probab=55.92 E-value=6.8 Score=15.56 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=17.2 Q ss_pred CEEEEEEECCCCCHHHHHHHHH Q ss_conf 3799997078862578999999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~ 522 (789) ..=+++.|.++.|||+|++-+. T Consensus 28 ~iKIvvvG~~~vGKTsLi~r~~ 49 (196) T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFL 49 (196) T ss_dssp CEEEEEECCTTSSHHHHHHHHH T ss_pred CEEEEEECCCCCCHHHHHHHHH T ss_conf 7699999999978999999997 No 387 >2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A Probab=55.90 E-value=6.8 Score=15.56 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=23.0 Q ss_pred CHHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHHCCCCC Q ss_conf 179999999999985046----6755545256899998635423 Q gi|254781225|r 710 ESHSLAKSYSEYREQELN----YDRKRISTRTVTLNLKQKGFIG 749 (789) Q Consensus 710 ~~~~l~~~y~~~~~~~~~----~~~~~~s~~~~~~~l~~~g~~~ 749 (789) +.+...++|.+.+++-.+ ...+|++.......|.+.|... T Consensus 232 P~s~~a~~~~~LA~~il~~~~~~~p~p~~~~~~~~~~~~~~~~~ 275 (289) T 2afh_E 232 PKAKQADEYRALARKVVDNKLLVIPNPITMDELEELLMEFGIME 275 (289) T ss_dssp TTSHHHHHHHHHHHHHHHCCCCBCCCCCCHHHHHHHHHHTTSSC T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC T ss_conf 39989999999999997599998888899889999999967775 No 388 >3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Probab=55.38 E-value=7 Score=15.51 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=20.9 Q ss_pred HHHHCCC--CC-CCEEEEEEECCCCCHHHHHHHHH Q ss_conf 9997598--74-33799997078862578999999 Q gi|254781225|r 491 GMALLGG--NK-AQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 491 g~~l~g~--~~-~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) |..+.|. +. .+.=+++.|..+-|||+|++-+. T Consensus 3 ~~~~~~~~~~~~~~~Ki~vvG~~~vGKSsLi~~~~ 37 (211) T 3bbp_A 3 GMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFM 37 (211) T ss_dssp --------------CEEEEEESTTSSHHHHHHHHH T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH T ss_conf 88898888898761799999959979999999997 No 389 >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Probab=54.91 E-value=7.1 Score=15.46 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=16.9 Q ss_pred EEEEECCCCCHHHHHHHHHHH Q ss_conf 999707886257899999997 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYA 524 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~l 524 (789) +++.|..+-|||+|++-+... T Consensus 9 ivvvG~~~vGKTsli~r~~~~ 29 (192) T 2cjw_A 9 VVLIGEQGVGKSTLANIFAGV 29 (192) T ss_dssp EEEECSTTSSHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHC T ss_conf 999998996889999999828 No 390 >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Probab=54.78 E-value=7.1 Score=15.44 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=15.7 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 8 i~viG~~~vGKTsli~~~~ 26 (168) T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168) T ss_dssp EEEECSTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999989909899999998 No 391 >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.73A {Homo sapiens} Probab=54.22 E-value=7.3 Score=15.38 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=15.5 Q ss_pred EEEEEEECCCCCHHHHHHHH Q ss_conf 79999707886257899999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l 521 (789) .=+++.|..+.|||+|++-+ T Consensus 21 iKvvivG~~~vGKTSLi~r~ 40 (201) T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSY 40 (201) T ss_dssp EEEEEECSTTSSHHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHH T ss_conf 18999998998989999999 No 392 >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Probab=53.93 E-value=7.3 Score=15.35 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=17.9 Q ss_pred CEEEEEEECCCCCHHHHHHHHHH Q ss_conf 37999970788625789999999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) +.=+++.|..+.|||+|++.+.. T Consensus 21 ~~Ki~viG~~~vGKTSli~~~~~ 43 (187) T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLT 43 (187) T ss_dssp EEEEEEECCTTSSHHHHHHHHHH T ss_pred EEEEEEECCCCCCHHHHHHHHHH T ss_conf 79999999899889999999973 No 393 >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* Probab=53.67 E-value=7.4 Score=15.33 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=13.2 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 3799997078862578999999972 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ++..+.-|.||-||||+.--|...| T Consensus 19 ~~IaV~SgKGGvGKTT~a~NLA~aL 43 (262) T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHY 43 (262) T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCHHHHHHHHHHHH T ss_conf 6999975999887999999999999 No 394 >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 1ryf_A* 1ryh_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C 1ds6_A* 2qme_A* 2ov2_A* ... Probab=53.43 E-value=7.5 Score=15.30 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=15.9 Q ss_pred EEEEEECCCCCHHHHHHHHH Q ss_conf 99997078862578999999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~ 522 (789) =+++.|..+.|||+|++-+. T Consensus 7 KvvivG~~~vGKTsli~~~~ 26 (186) T 1mh1_A 7 KCVVVGDGAVGKTCLLISYT 26 (186) T ss_dssp EEEEECSTTSSHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHH T ss_conf 99999989969999999997 No 395 >2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens} PDB: 2cls_A* Probab=52.25 E-value=7.8 Score=15.18 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=17.5 Q ss_pred CCEEEEEEECCCCCHHHHHHHHH Q ss_conf 33799997078862578999999 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) .+.=+++.|..+.|||+|++-+. T Consensus 9 ~~~Ki~vvG~~~vGKTsli~~~~ 31 (197) T 2rex_B 9 ARCKLVLVGDVQCGKTAMLQVLA 31 (197) T ss_dssp -CEEEEEECSTTSSHHHHHHHHH T ss_pred CEEEEEEECCCCCCHHHHHHHHH T ss_conf 41699999999958899999997 No 396 >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Probab=52.12 E-value=7.8 Score=15.17 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=20.4 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 433799997078862578999999972 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) +..-.++++|+.|.||+++...+...+ T Consensus 22 ~l~ha~L~~G~~G~GK~~~a~~~a~~l 48 (334) T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYL 48 (334) T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 956036358999988999999999997 No 397 >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Probab=50.52 E-value=8.3 Score=15.00 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=16.5 Q ss_pred EEEEEEECCCCCHHHHHHHHH Q ss_conf 799997078862578999999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~~l~ 522 (789) .=+++.|..+.|||+|++-+. T Consensus 9 ~KV~vvG~~~vGKTsLi~r~~ 29 (199) T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFV 29 (199) T ss_dssp EEEEEEECTTSSHHHHHHHHH T ss_pred CEEEEECCCCCCHHHHHHHHH T ss_conf 489999969988999999996 No 398 >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Probab=50.21 E-value=7.6 Score=15.26 Aligned_cols=18 Identities=50% Similarity=0.776 Sum_probs=13.7 Q ss_pred EEEEEEECCCCCHHHHHH Q ss_conf 799997078862578999 Q gi|254781225|r 502 RFIHIRGVGGSGKSTLMN 519 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~~~ 519 (789) .+.-+.|.-++|||++++ T Consensus 524 ~l~~vtGvsGsGKstl~~ 541 (842) T 2vf7_A 524 VMTSVTGVSGSGKSTLVS 541 (842) T ss_dssp SEEEEECCTTSSHHHHCC T ss_pred CEEEEECCCCCCCHHHHH T ss_conf 668885346766224588 No 399 >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} Probab=49.96 E-value=7.9 Score=15.13 Aligned_cols=19 Identities=58% Similarity=0.948 Sum_probs=14.7 Q ss_pred CEEEEEEECCCCCHHHHHH Q ss_conf 3799997078862578999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMN 519 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~ 519 (789) ..++-+.|..++||||++. T Consensus 650 G~i~~i~G~sGsGKstL~~ 668 (972) T 2r6f_A 650 GTFVAVTGVSGSGKSTLVN 668 (972) T ss_dssp SSEEECCBCTTSSHHHHHT T ss_pred CCEEEEECCCCCCCCCHHH T ss_conf 9755430467777640078 No 400 >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* Probab=49.84 E-value=8.5 Score=14.93 Aligned_cols=10 Identities=30% Similarity=0.185 Sum_probs=4.9 Q ss_pred EECCCCCCCC Q ss_conf 9743888558 Q gi|254781225|r 436 LDLETGQKVK 445 (789) Q Consensus 436 ~dl~t~~~~~ 445 (789) +|..|+.|.+ T Consensus 265 ~d~~t~~~~~ 274 (296) T 1cr0_A 265 YNKETGWLEP 274 (296) T ss_dssp ECTTTCCEEE T ss_pred EECCCCEEEE T ss_conf 9688656964 No 401 >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Probab=49.49 E-value=8.6 Score=14.90 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.5 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+.|||+|++-+. T Consensus 27 I~vvG~~~vGKTsLi~r~~ 45 (201) T 3oes_A 27 VVILGYRCVGKTSLAHQFV 45 (201) T ss_dssp EEEEESTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999979988999999997 No 402 >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Probab=49.30 E-value=8.6 Score=14.88 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=19.9 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 7433799997078862578999999 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) .....-+.+.|-.+-|||||+|.|. T Consensus 117 ~~~~~~v~vvG~PNVGKSsliN~L~ 141 (282) T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLA 141 (282) T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHH T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH T ss_conf 7765157762388565889999982 No 403 >2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A Probab=48.29 E-value=9 Score=14.78 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=16.8 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 37999970788625789999999723 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) +..+++.|+.|.||+|.+--|...+- T Consensus 99 p~vil~vG~nG~GKTTTiaKLA~~~~ 124 (309) T 2qy9_A 99 PFVILMVGVNGVGKTTTIGKLARQFE 124 (309) T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 86999965766676550789999998 No 404 >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Probab=48.12 E-value=9 Score=14.76 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=15.9 Q ss_pred EEEEECCCCCHHHHHHHHHH Q ss_conf 99970788625789999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~ 523 (789) +++.|..+-|||+|++-+.. T Consensus 10 I~vvG~~~vGKTsLi~r~~~ 29 (208) T 3clv_A 10 TVLLGESSVGKSSIVLRLTK 29 (208) T ss_dssp EEEECCTTSSHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHC T ss_conf 99999999488999999971 No 405 >1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 Probab=47.71 E-value=9.1 Score=14.72 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=11.1 Q ss_pred EEECCCCCHHHHHHHHHHHHC Q ss_conf 970788625789999999723 Q gi|254781225|r 506 IRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 506 ~~G~G~nGKSt~~~~l~~llG 526 (789) ++|.||-||||+.--|...|- T Consensus 6 i~gKGGVGKTT~a~nLA~~La 26 (269) T 1cp2_A 6 IYGKGGIGKSTTTQNLTSGLH 26 (269) T ss_dssp EEECTTSSHHHHHHHHHHHHH T ss_pred EECCCCCCHHHHHHHHHHHHH T ss_conf 989998769999999999999 No 406 >3hws_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli k-12} PDB: 3hte_A Probab=45.98 E-value=9.7 Score=14.55 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=40.4 Q ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHH----HHCCCCCCC-----EEEEEEECCCCCHHHHHHHHHHHHCCCC Q ss_conf 7899999888-7999999999999999----975987433-----7999970788625789999999723300 Q gi|254781225|r 467 QEFLDLVSGY-FESEEVMDYFTRCVGM----ALLGGNKAQ-----RFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789) Q Consensus 467 p~~~~~l~~~-~~d~e~~~~l~~~~g~----~l~g~~~~~-----~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789) ......|++. +|-++.++-+-..+-- .-.|..... .-|++.||.|-||+-+...|...|+.+. T Consensus 7 ~~i~~~L~~~ViGQd~Ai~~va~al~~~~~r~~~~~~~~~~~~~~~~~Lf~GPTGvGKTelAk~LA~~l~~~~ 79 (363) T 3hws_A 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPF 79 (363) T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE T ss_pred HHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH T ss_conf 9999985892649399999999999999988745677788766765189989998889999999999860046 No 407 >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A Probab=45.45 E-value=9.9 Score=14.49 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=15.1 Q ss_pred EEEEEECCCCCHHHHHHHH Q ss_conf 9999707886257899999 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l 521 (789) +++++|..++|||.|.+-+ T Consensus 1 iiLVtGGarSGKS~~AE~l 19 (180) T 1c9k_A 1 MILVTGGARSGKSRHAEAL 19 (180) T ss_dssp CEEEEECTTSSHHHHHHHH T ss_pred CEEEECCCCCCHHHHHHHH T ss_conf 9899789875799999999 No 408 >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Probab=45.34 E-value=9.9 Score=14.48 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=16.3 Q ss_pred CEEEEEEECCCCCHHHHHHHH Q ss_conf 379999707886257899999 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l 521 (789) +.=+++.|..+.|||+|++-+ T Consensus 7 ~~ki~vvG~~~vGKTsli~r~ 27 (178) T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRF 27 (178) T ss_dssp EEEEEEECCGGGCHHHHHHHH T ss_pred EEEEEEECCCCCCHHHHHHHH T ss_conf 469999998998899999999 No 409 >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A Probab=45.07 E-value=10 Score=14.46 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=5.1 Q ss_pred HHHHHHHHHHC Q ss_conf 89999999723 Q gi|254781225|r 516 TLMNLIKYAFG 526 (789) Q Consensus 516 t~~~~l~~llG 526 (789) ++--++..++| T Consensus 394 vir~ll~~~l~ 404 (469) T 1bif_A 394 VMRCLLAYFLD 404 (469) T ss_dssp HHHHHHHHHTT T ss_pred HHHHHHHHHHC T ss_conf 99999999809 No 410 >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Probab=44.82 E-value=10 Score=14.43 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=27.3 Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 88799999999999999997598743379999707886257899999997 Q gi|254781225|r 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789) Q Consensus 475 ~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789) +++|..+.+.-+.+.+.... .. ..-++++|+-|+||+++.+.|... T Consensus 2 ~liG~S~~~~~l~~~l~~~a--~~--~~pvli~Ge~GtGK~~~A~~iH~~ 47 (145) T 3n70_A 2 ELIGRSEWINQYRRRLQQLS--ET--DIAVWLYGAPGTGRMTGARYLHQF 47 (145) T ss_dssp --CCSSHHHHHHHHHHHHHT--TC--CSCEEEESSTTSSHHHHHHHHHHS T ss_pred EEEECCHHHHHHHHHHHHHH--CC--CCCEEEECCCCCCHHHHHHHHHHH T ss_conf 06988999999999999996--88--994899899997879999999873 No 411 >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Probab=44.39 E-value=10 Score=14.39 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=5.3 Q ss_pred HHHHHHHHHHC Q ss_conf 99999999975 Q gi|254781225|r 485 YFTRCVGMALL 495 (789) Q Consensus 485 ~l~~~~g~~l~ 495 (789) -|++++.||.+ T Consensus 392 ~L~~~~~~~~~ 402 (591) T 2v1x_A 392 KLYEMVSYCQN 402 (591) T ss_dssp HHHHHHHHHTC T ss_pred HHHHHHHHHHH T ss_conf 99999999998 No 412 >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Probab=43.61 E-value=11 Score=14.31 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.2 Q ss_pred EEEEECCCCCHHHHHHHHH Q ss_conf 9997078862578999999 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~ 522 (789) +++.|..+-|||+|++-+. T Consensus 12 I~viG~~~vGKTsLi~r~~ 30 (212) T 2j0v_A 12 CVTVGDGAVGKTCMLICYT 30 (212) T ss_dssp EEEEESTTSSHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHH T ss_conf 9999979978899999997 No 413 >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A Probab=42.95 E-value=11 Score=14.24 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=9.2 Q ss_pred EEEEECC-CCCHHHHHHHHHHHH Q ss_conf 9997078-862578999999972 Q gi|254781225|r 504 IHIRGVG-GSGKSTLMNLIKYAF 525 (789) Q Consensus 504 ~~~~G~G-~nGKSt~~~~l~~ll 525 (789) +|.+|+| +-||||+.-.|..+| T Consensus 4 ~~Itgt~~GVGKTtvs~~La~~L 26 (224) T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAA 26 (224) T ss_dssp EEEEESSTTSCHHHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHH T ss_conf 99998999975999999999999 No 414 >2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* Probab=40.67 E-value=12 Score=14.02 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=9.8 Q ss_pred CCHHHHHHHH--HCCEEEEEC Q ss_conf 8989997420--078899923 Q gi|254781225|r 41 LSSEKIDKLP--ACGFGFVCG 59 (789) Q Consensus 41 ~~~~~i~~~~--~~giGi~~G 59 (789) .+.+++++.. ...|+|+.. T Consensus 10 msd~~l~~~L~~~ksIAVVGa 30 (144) T 2d59_A 10 LTDEDIREILTRYKKIALVGA 30 (144) T ss_dssp CCHHHHHHHHHHCCEEEEETC T ss_pred CCHHHHHHHHHCCCEEEEECC T ss_conf 799999999877894999863 No 415 >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 3k0c_A* 3k0f_A* Probab=40.44 E-value=12 Score=13.99 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=21.7 Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 75987433799997078862578999999 Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) |-|.....-..+++|+.++|||+|.--+. T Consensus 274 lggG~~~gs~~ll~G~~GsGKT~l~~q~~ 302 (525) T 1tf7_A 274 CGGGFFKDSIILATGATGTGKTLLVSRFV 302 (525) T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHH T ss_pred CCCCCCCCEEEEEECCCCCHHHHHHHHHH T ss_conf 27985345289983699874899999999 No 416 >3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} Probab=40.11 E-value=12 Score=13.96 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=7.2 Q ss_pred HHHHHCCCEEEEECCC Q ss_conf 9999779859773567 Q gi|254781225|r 11 KQAIHNGFKLIPLRLG 26 (789) Q Consensus 11 ~~~i~~G~~viPi~pg 26 (789) +.+.+.||.|+|+.|. T Consensus 25 ~~L~~~G~~V~pVnP~ 40 (122) T 3ff4_A 25 ERLKSHGHEFIPVGRK 40 (122) T ss_dssp HHHHHHTCCEEEESSS T ss_pred HHHHHCCCEEEEECCC T ss_conf 9999789989998887 No 417 >2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: a.80.1.1 c.37.1.20 Probab=39.99 E-value=12 Score=13.95 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=66.1 Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC--CCCHH--HH Q ss_conf 999999999999999759874337999970788625789999999723300034426764201245555--68988--99 Q gi|254781225|r 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG--KANPS--LI 554 (789) Q Consensus 479 d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~--~~~~~--la 554 (789) .++.++.+++++- ...-.-++++|+-+.||+++...+..-+.......++...+... +.+.+ ..+.- -+ T Consensus 2 ~~~~~~~~~~~~~------~~~~~~~~~~g~~g~gk~~~~~~~~~~i~~~~~~HpD~~~i~~e-~~~I~Id~IR~l~~~~ 74 (305) T 2gno_A 2 AKDQLETLKRIIE------KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE-GENIGIDDIRTIKDFL 74 (305) T ss_dssp --CHHHHHHHHHH------TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS-SSCBCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH------CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCCCHHHHHHHHHHH T ss_conf 6789999999997------69997498889999887999999999973656779988987077-6789989999999999 Q ss_pred H----HCCCEEEEEECCCCCCCCCC-CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEE Q ss_conf 7----38980999934677760131-002454159858732104786068714528999738863426798416646899 Q gi|254781225|r 555 R----LMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 (789) Q Consensus 555 ~----l~g~r~~~~~E~~~~~~~~~-~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~i 629 (789) . .-+.+++++.|.+.-..-+. +.+|.| .+..+...+++.||+.-.+-. .+-.|... T Consensus 75 ~~~p~~~~~KVvIId~ad~lt~~AaNaLLK~L----------------EEPp~~t~fIL~t~~~~kilp---TI~SRCq~ 135 (305) T 2gno_A 75 NYSPELYTRKYVIVHDCERMTQQAANAFLKAL----------------EEPPEYAVIVLNTRRWHYLLP---TIKSRVFR 135 (305) T ss_dssp TSCCSSSSSEEEEETTGGGBCHHHHHHTHHHH----------------HSCCTTEEEEEEESCGGGSCH---HHHTTSEE T ss_pred HHCCCCCCCEEEEEECHHHCCHHHHHHHHHHH----------------HCCCCCCEEEEEECCCCCCCC---HHHCCEEE T ss_conf 53553589669998575542999999999997----------------479977058752057424763---00310367 Q ss_pred EECCC Q ss_conf 96588 Q gi|254781225|r 630 IPFDK 634 (789) Q Consensus 630 ipF~~ 634 (789) +.|.. T Consensus 136 ~~~~~ 140 (305) T 2gno_A 136 VVVNV 140 (305) T ss_dssp EECCC T ss_pred EECCC T ss_conf 74488 No 418 >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Probab=39.81 E-value=12 Score=13.93 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=16.8 Q ss_pred CCCEEEEEEECCCCCHHHHHHH Q ss_conf 4337999970788625789999 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNL 520 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~ 520 (789) .....+++.|+.|+||||.+-. T Consensus 74 ~~n~vvvV~G~TGsGKSTqiPq 95 (235) T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQ 95 (235) T ss_dssp HHCSEEEEECCTTSSHHHHHHH T ss_pred HHCCEEEEEECCCCCHHHHHHH T ss_conf 9799799993898999999999 No 419 >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ewa_A* 3ew9_A* 3etl_A* 2gdj_A* Probab=38.89 E-value=12 Score=13.84 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=15.4 Q ss_pred CCCCCCCEEEEEEECCCCCHHHHH Q ss_conf 598743379999707886257899 Q gi|254781225|r 495 LGGNKAQRFIHIRGVGGSGKSTLM 518 (789) Q Consensus 495 ~g~~~~~~~~~~~G~G~nGKSt~~ 518 (789) -|+........++|+.+.|||+|. T Consensus 92 ~GGl~~G~itei~G~pGsGKT~la 115 (322) T 2i1q_A 92 GGGLESQSVTEFAGVFGSGKTQIM 115 (322) T ss_dssp TSSEETTEEEEEEESTTSSHHHHH T ss_pred CCCCCCCEEEEEECCCCCCCCHHH T ss_conf 799778838999768887737999 No 420 >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A* Probab=38.80 E-value=12 Score=13.83 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=18.7 Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 433799997078862578999999972 Q gi|254781225|r 499 KAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 499 ~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ..+..+++.|+.+.||+|.+--+...+ T Consensus 96 ~~~~i~~lvG~~G~GKTTt~aKLA~~~ 122 (295) T 1ls1_A 96 KDRNLWFLVGLQGSGKTTTAAKLALYY 122 (295) T ss_dssp CSSEEEEEECCTTTTHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCCEEHHHHHHHHH T ss_conf 896499996778898521199999999 No 421 >2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Probab=37.51 E-value=13 Score=13.70 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=14.7 Q ss_pred EEEEEEECCCCCHHHH-HHHHHHHH Q ss_conf 7999970788625789-99999972 Q gi|254781225|r 502 RFIHIRGVGGSGKSTL-MNLIKYAF 525 (789) Q Consensus 502 ~~~~~~G~G~nGKSt~-~~~l~~ll 525 (789) -+.++.||.|+|||++ ..++..++ T Consensus 372 ~lsLIqGPPGTGKT~Ti~~iI~~L~ 396 (800) T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLA 396 (800) T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH T ss_pred CCEEEECCCCCCHHHHHHHHHHHHH T ss_conf 9728989999995099999999999 No 422 >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Probab=36.96 E-value=13 Score=13.64 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=14.9 Q ss_pred HHHHHHHHHCCCEEEEECC-CCCCC Q ss_conf 8878999977985977356-77878 Q gi|254781225|r 7 KEQAKQAIHNGFKLIPLRL-GDKRP 30 (789) Q Consensus 7 ~~~~~~~i~~G~~viPi~p-g~KrP 30 (789) |..|-..+-+|-.++=+.| |.+|. T Consensus 30 Q~~aI~~iL~G~Dvlv~apTGsGKT 54 (523) T 1oyw_A 30 QEEIIDTVLSGRDCLVVMPTGGGKS 54 (523) T ss_dssp HHHHHHHHHTTCCEEEECSCHHHHH T ss_pred HHHHHHHHHCCCCEEEECCCCCHHH T ss_conf 9999999983998899869984699 No 423 >3l0i_B RAS-related protein RAB-1A; GEF/GDF-RAB complex, GTP-binding, guanine-nucleotide exchange factor, GDI-displacement factor; 2.85A {Homo sapiens} Probab=36.85 E-value=6 Score=15.93 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=18.5 Q ss_pred HHCCCCCC-C-EE-EEEEECCCCCHHHHHHH Q ss_conf 97598743-3-79-99970788625789999 Q gi|254781225|r 493 ALLGGNKA-Q-RF-IHIRGVGGSGKSTLMNL 520 (789) Q Consensus 493 ~l~g~~~~-~-~~-~~~~G~G~nGKSt~~~~ 520 (789) ...+-+.+ . .| +++.|..+.|||+|++- T Consensus 22 ~~~~~~~~~~~~~KI~vlG~~~vGKTSLi~r 52 (199) T 3l0i_B 22 PMSSMNPEYDYLFKLLLIGDSGVGKSCLLLR 52 (199) T ss_dssp ---CC-CCCSEEEEEEEECCTTSCCTTTTTS T ss_pred CCCCCCCCCCEEEEEEEECCCCCCHHHHHHH T ss_conf 7656798757798999999899598999999 No 424 >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Probab=36.47 E-value=14 Score=13.59 Aligned_cols=14 Identities=21% Similarity=0.143 Sum_probs=7.5 Q ss_pred CCEEEEEEECCCCH Q ss_conf 98799996468812 Q gi|254781225|r 63 QPLYAFDIDSKDEK 76 (789) Q Consensus 63 ~glv~iDiD~~d~~ 76 (789) ..++.||.|...+. T Consensus 32 ~~VlliD~D~~~~~ 45 (237) T 1g3q_A 32 RKVLAVDGDLTMAN 45 (237) T ss_dssp CCEEEEECCTTSCC T ss_pred CCEEEEECCCCCCC T ss_conf 98999979999997 No 425 >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP} Probab=36.44 E-value=14 Score=13.59 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=16.9 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 999970788625789999999723 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG 526 (789) ..+.-+.||-||||+.--|...|- T Consensus 3 I~v~s~KGGvGKTT~a~nLA~~La 26 (209) T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLA 26 (209) T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHHHHH T ss_conf 999829998749999999999999 No 426 >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} Probab=33.13 E-value=15 Score=13.24 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=19.6 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 37999970788625789999999723 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) ...+++.|+.|.||+|.+-=|.+.+- T Consensus 100 p~vi~~vG~~G~GKTTTiaKLA~~~~ 125 (302) T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302) T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 86999757988867749999999999 No 427 >3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Pyrococcus horikoshii OT3} Probab=32.84 E-value=15 Score=13.21 Aligned_cols=25 Identities=8% Similarity=-0.040 Sum_probs=13.4 Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHH Q ss_conf 7598743379999707886257899 Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLM 518 (789) Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~ 518 (789) |-|....-..+++.|+.++|||+|. T Consensus 14 l~GG~~~g~~~ll~g~~gsgkt~l~ 38 (260) T 3bs4_A 14 IGKIKKHSLILIHEEDASSRGKDIL 38 (260) T ss_dssp HCCBCTTCEEEEEECSGGGCHHHHH T ss_pred HCCCCCCCEEEEEEECCCCCHHHHH T ss_conf 3799879869999938999989999 No 428 >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Probab=32.74 E-value=15 Score=13.20 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=5.6 Q ss_pred CCCCCCCCHHHHHHH Q ss_conf 221646899999999 Q gi|254781225|r 159 VEDTPLLSEEDVEYL 173 (789) Q Consensus 159 ~~~~P~i~~~~~~~l 173 (789) +.++|=+.+..++.| T Consensus 37 l~~l~gv~~~~~~kL 51 (349) T 1pzn_A 37 IEDLPGVGPATAEKL 51 (349) T ss_dssp SSCCTTCCHHHHHHH T ss_pred HHHCCCCCHHHHHHH T ss_conf 633799699999999 No 429 >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} Probab=32.60 E-value=16 Score=13.19 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=16.9 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 3799997078862578999999972 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) +..+++.|+-|.||+|.+-=|.+.+ T Consensus 157 p~vIl~vG~nGvGKTTTiaKLA~~~ 181 (359) T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359) T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 8699997888886461799999999 No 430 >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Probab=32.16 E-value=16 Score=13.14 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=19.9 Q ss_pred HHCCCCCCCEEEEEEECCCCCHHHHHHHH Q ss_conf 97598743379999707886257899999 Q gi|254781225|r 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 (789) Q Consensus 493 ~l~g~~~~~~~~~~~G~G~nGKSt~~~~l 521 (789) .|-|+.....+..++|+.+.|||+|.--+ T Consensus 99 lLgGGi~~G~itei~G~~GsGKT~l~l~l 127 (324) T 2z43_A 99 LLAGGIETRTMTEFFGEFGSGKTQLCHQL 127 (324) T ss_dssp HTTTSEETTSEEEEEESTTSSHHHHHHHH T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHH T ss_conf 77897417879998758888804799999 No 431 >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls} Probab=31.75 E-value=16 Score=13.09 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=12.5 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 999970788625789999999723 Q gi|254781225|r 503 FIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 503 ~~~~~G~G~nGKSt~~~~l~~llG 526 (789) ..|+-+.||-||||+.--|...|. T Consensus 7 I~v~s~kGGvGkTt~a~nlA~~La 30 (245) T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALS 30 (245) T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT T ss_pred EEEECCCCCCHHHHHHHHHHHHHH T ss_conf 999899997659999999999999 No 432 >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Probab=31.62 E-value=16 Score=13.08 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=19.2 Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHH Q ss_conf 75987433799997078862578999999 Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 (789) Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~ 522 (789) |-|+........++|+.+.|||+|.--+. T Consensus 115 LgGGi~~G~ItEi~G~~GsGKTql~l~la 143 (343) T 1v5w_A 115 LGGGIESMAITEAFGEFRTGKTQLSHTLC 143 (343) T ss_dssp TTSSBCSSEEEEEECCTTCTHHHHHHHHH T ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHHHH T ss_conf 08995788699997799888999999999 No 433 >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 Probab=31.08 E-value=16 Score=13.02 Aligned_cols=14 Identities=21% Similarity=0.166 Sum_probs=7.4 Q ss_pred CCCCCCCHHHHHHH Q ss_conf 45656898999742 Q gi|254781225|r 36 WEEQLLSSEKIDKL 49 (789) Q Consensus 36 w~~~~~~~~~i~~~ 49 (789) ++.+-.+.+.++++ T Consensus 18 L~~RgI~~~~~~~~ 31 (503) T 1q57_A 18 LTARGISKETCQKA 31 (503) T ss_dssp BTTTTBCHHHHHHH T ss_pred HHHCCCCHHHHHHC T ss_conf 75488899999975 No 434 >3co5_A Putative two-component system transcriptional response regulator; structural genomics, APC89341.1, sigma-54 interaction domain; 2.40A {Neisseria gonorrhoeae fa 1090} Probab=30.77 E-value=15 Score=13.24 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=25.4 Q ss_pred HCCC-HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH Q ss_conf 8799-99999999999999759874337999970788625789999999 Q gi|254781225|r 476 YFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 476 ~~~d-~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) .+|. +.+.+..+++--++-+ ..=++++|..|+||+++...|.. T Consensus 6 liG~S~~~~~l~~~i~~~a~~-----~~pvlI~GE~GtGK~~~A~~IH~ 49 (143) T 3co5_A 6 KLGNSAAIQEMNREVEAAAKR-----TSPVFLTGEAGSPFETVARYFHK 49 (143) T ss_dssp --CCCHHHHHHHHHHHHHHTC-----SSCEEEEEETTCCHHHHHGGGCC T ss_pred CEECCHHHHHHHHHHHHHHCC-----CCCEEEECCCCCCHHHHHHHHHH T ss_conf 367999999999999999588-----98089982899878999999997 No 435 >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Probab=30.09 E-value=17 Score=12.91 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=14.9 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 3799997078862578999999972 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ...+++.|+-|.||+|.+--|...+ T Consensus 98 p~vi~lvG~~G~GKTTt~aKLA~~~ 122 (297) T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297) T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH T ss_pred CEEEEEECCCCCCCHHHHHHHHHHH T ss_conf 8799974676666203799999999 No 436 >2ax3_A Hypothetical protein TM0922; putative carbohydrate kinase, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.27A {Thermotoga maritima MSB8} SCOP: c.72.1.4 c.104.1.1 Probab=29.37 E-value=16 Score=13.06 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=8.1 Q ss_pred CCEEEEECCCCC Q ss_conf 788999234779 Q gi|254781225|r 52 CGFGFVCGVGEQ 63 (789) Q Consensus 52 ~giGi~~G~~s~ 63 (789) ..|-|+||++.| T Consensus 53 ~~v~vl~G~GNN 64 (502) T 2ax3_A 53 YRFLVLCGGGNN 64 (502) T ss_dssp CEEEEEECSSHH T ss_pred CEEEEEECCCCC T ss_conf 989999899978 No 437 >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* Probab=28.96 E-value=18 Score=12.79 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=16.5 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 37999970788625789999999723 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) ++..|.-|.||-||||+.--|...|- T Consensus 7 k~I~v~s~KGGvGKTTia~nlA~~La 32 (257) T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLA 32 (257) T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHH T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH T ss_conf 69999869998769999999999999 No 438 >2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A Probab=28.64 E-value=18 Score=12.75 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=7.0 Q ss_pred CEEEEEEECCCCCHHHH Q ss_conf 37999970788625789 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTL 517 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~ 517 (789) +.++++.|+|+||=--| T Consensus 80 ~~IlvlcG~GNNGGDGl 96 (265) T 2o8n_A 80 PTVLVICGPGNNGGDGL 96 (265) T ss_dssp CEEEEEECSSHHHHHHH T ss_pred CEEEEEECCCCCHHHHH T ss_conf 84999988998769999 No 439 >3h20_A Replication protein B; primase, nucleotidyltransferase, helix-bundle-domain; 1.99A {Plasmid RSF1010} PDB: 3h25_A Probab=28.59 E-value=18 Score=12.75 Aligned_cols=103 Identities=11% Similarity=0.063 Sum_probs=44.4 Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCC--CCCCCCCCC--CHHHHHHHHHCCEEEEECCCC-CCEEEEEEECCCCHHHHH Q ss_conf 888789999779859773567787877--565456568--989997420078899923477-987999964688125678 Q gi|254781225|r 6 WKEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLL--SSEKIDKLPACGFGFVCGVGE-QPLYAFDIDSKDEKTANT 80 (789) Q Consensus 6 ~~~~~~~~i~~G~~viPi~pg~KrP~~--~~~w~~~~~--~~~~i~~~~~~giGi~~G~~s-~glv~iDiD~~d~~~~~~ 80 (789) -++..+++-+.|..-+=|..++..+.. ..+|+...+ ....+++....|-+|+.-+.+ ..-..|++|....+... T Consensus 7 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~~~n~~g~~iyv~p~~~~~~~~v~~Dd~~~~~~~- 85 (323) T 3h20_A 7 LQAIGRQLKAMGCERFDIGVRDATTGQMMNREWSAAEVLQNTPWLKRMNAQGNDVYIRPAEQERHGLVLVDDLSEFDLD- 85 (323) T ss_dssp HHHHHHHHHHHCCSEEEEEEEETTTCCEEEEEEEHHHHHHTHHHHHHHHHTTEEEEEEECTTCCCCEEEEEEECHHHHH- T ss_pred HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHH- T ss_conf 9999999986085310013467431211233667777998779999875258867997567787404872679899999- Q ss_pred HHHHHHHCCCCCEEEECCCCCEEEEEEECCC Q ss_conf 9998764189976996788965999950731 Q gi|254781225|r 81 FKDTFEILHGTPIVRIGQKPKILIPFRMNKE 111 (789) Q Consensus 81 ~~~~~~~l~g~p~~~~g~~~~~~~~yr~~~~ 111 (789) .+.......+.+-.+++++.|.+.+++.. T Consensus 86 --~l~~~g~~P~~vv~ts~g~~h~~w~~~~~ 114 (323) T 3h20_A 86 --DMKAEGREPALVVETSPKNYQAWVKVADA 114 (323) T ss_dssp --HHHHTTCCCSEEEEEETTEEEEEEECCSC T ss_pred --HHHHCCCCCCEEEEECCCCEEEEEEECCC T ss_conf --99965899867998089967999981798 No 440 >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* Probab=28.46 E-value=18 Score=12.73 Aligned_cols=197 Identities=11% Similarity=0.095 Sum_probs=80.6 Q ss_pred HHHHHHCCCH-HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC-------CCCCCCHHHHHHC- Q ss_conf 9998887999-999999999999975987433799997078862578999999972330-------0034426764201- Q gi|254781225|r 471 DLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ-------YVINAEASDIMQN- 541 (789) Q Consensus 471 ~~l~~~~~d~-e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~-------~~~~~~~~~~~~~- 541 (789) .|-++++|.. .+.+.+.++.-++-++ .. ++++|.-|+||+.+...|...-+.. ++...+....... T Consensus 3 ~~~~~liG~S~~~~~~~~~i~~~a~~~---~p--vlI~GE~GtGK~~lA~~iH~~s~~~~~~~~~i~c~~~~~~~~~~~l 77 (265) T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLD---KP--VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL 77 (265) T ss_dssp -------CCCHHHHHHHHHHHHHTTSC---SC--EEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHH T ss_pred CCCCCEEECCHHHHHHHHHHHHHHCCC---CC--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 778871872999999999999984899---97--8988989978999999999846465799734667776244689997 Q ss_pred CCCCC------CCCCHHHHHHCCCEEEEEECCCCCCCCCCC-EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCC Q ss_conf 24555------568988997389809999346777601310-02454159858732104786068714528999738863 Q gi|254781225|r 542 RPPEA------GKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 (789) Q Consensus 542 ~~~~~------~~~~~~la~l~g~r~~~~~E~~~~~~~~~~-~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P 614 (789) .+... ...+..+......-.+++.+.+.-....-. .++.|..+. + ++.... ......+.++++++.-+ T Consensus 78 ~g~~~~~~~~~~~~~~G~le~a~~GtL~l~~i~~L~~~~Q~~L~~~l~~~~-~--~r~~~~--~~~~~~~rii~ss~~~~ 152 (265) T 2bjv_A 78 FGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE-L--ERVGGS--QPLQVNVRLVCATNADL 152 (265) T ss_dssp HCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCE-E--CCCCC----CEECCCEEEEEESSCH T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCE-E--EECCCC--CEEEEEEEEECCCCCCH T ss_conf 186567766311168880788689889986614499999999999850691-7--977999--62566566522456678 Q ss_pred CC----CCCCCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHH Q ss_conf 42----67984166468999658878887878334220120447999999999999987889--887889999999999 Q gi|254781225|r 615 FV----RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD--VDIPEVCLKAKEEER 687 (789) Q Consensus 615 ~~----~~~d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i~~w~l~g~~~~~~~g~~--~~~p~~v~~a~~~y~ 687 (789) .- ...+..++.|+.......+- |-++. ...+.+....+.-+. .+.|.+ +...+.+.+....|. T Consensus 153 ~~~~~~~~~~~~L~~~l~~~~i~vPp------LreR~--eDi~~l~~~~l~~~~--~~~~~~~~~~ls~~a~~~L~~y~ 221 (265) T 2bjv_A 153 PAMVNEGTFRADLLDALAFDVVQLPP------LRERE--SDIMLMAEYFAIQMC--REIKLPLFPGFTERARETLLNYR 221 (265) T ss_dssp HHHHHHTSSCHHHHHHHCSEEEECCC------GGGCH--HHHHHHHHHHHHHHH--HHTTCSSCCCBCHHHHHHHHHSC T ss_pred HHHHHHCCCCCCHHHCCCEEEEECCC------CCCCC--CCHHHHHHHHHHHHH--HHHCCCCCCCCCHHHHHHHHHCC T ss_conf 99988087543243301437998189------99875--479999999999999--98389854557899999998189 No 441 >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 Probab=28.12 E-value=18 Score=12.69 Aligned_cols=13 Identities=8% Similarity=-0.286 Sum_probs=5.8 Q ss_pred CCHHHHHHHHHHH Q ss_conf 8999999999762 Q gi|254781225|r 165 LSEEDVEYLFKFF 177 (789) Q Consensus 165 i~~~~~~~l~~~~ 177 (789) +|+.....+++.. T Consensus 77 ~p~~~~~~il~e~ 89 (138) T 1y81_A 77 VPPKVGLQVAKEA 89 (138) T ss_dssp SCHHHHHHHHHHH T ss_pred ECHHHHHHHHHHH T ss_conf 1788879999999 No 442 >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Probab=27.89 E-value=19 Score=12.67 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=13.9 Q ss_pred CCCCCCEEEEEEECCCCCHHHHHH Q ss_conf 987433799997078862578999 Q gi|254781225|r 496 GGNKAQRFIHIRGVGGSGKSTLMN 519 (789) Q Consensus 496 g~~~~~~~~~~~G~G~nGKSt~~~ 519 (789) |......+..++|+.+.|||+|.- T Consensus 173 GGIp~G~ItEI~GepGsGKTqLal 196 (400) T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCH 196 (400) T ss_dssp TSEETTSEEEEEESTTSSHHHHHH T ss_pred CCCCCCEEEEEECCCCCCHHHHHH T ss_conf 997688489985699899999999 No 443 >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A Probab=27.32 E-value=19 Score=12.60 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=19.1 Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 337999970788625789999999723 Q gi|254781225|r 500 AQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 500 ~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) ....+++.|+.|.||+|.+-=|...+- T Consensus 104 ~p~villvG~~G~GKTTTiaKLA~~~~ 130 (320) T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320) T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHH T ss_conf 977999977878870528999999998 No 444 >1r5b_A Eukaryotic peptide chain release factor GTP- binding subunit; translation termination, peptide release, GTPase; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A Probab=26.19 E-value=20 Score=12.47 Aligned_cols=29 Identities=34% Similarity=0.294 Sum_probs=0.0 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 74337999970788625789999999723 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) .+++.=+...|.=..||||++..|....| T Consensus 40 ~k~~vni~viGhVD~GKSTL~g~L~~~~g 68 (467) T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTG 68 (467) T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTT T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHCC T ss_conf 99804999996678649899999999719 No 445 >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 Probab=26.13 E-value=20 Score=12.46 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=0.0 Q ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCCCCE------EEEEEECCCCCHHHHHHHHHHHH Q ss_conf 78999998887-9999999999999999759874337------99997078862578999999972 Q gi|254781225|r 467 QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR------FIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 467 p~~~~~l~~~~-~d~e~~~~l~~~~g~~l~g~~~~~~------~~~~~G~G~nGKSt~~~~l~~ll 525 (789) +...++++.+- ...+..+.+++.+.-.+........ .+++.|+.|.||+|.+--|...+ T Consensus 63 ~~~~~ii~~l~~~~~~~~~~l~~~~~~~l~~~~~l~~~~~~p~vi~~vG~~G~GKTTT~aKLA~~~ 128 (306) T 1vma_A 63 ETTEYILERLEEKDGDALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306) T ss_dssp HHHHHHHHHHTTCCSCHHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH T ss_conf 999999999987668899999999999853233100167899699997788898431599999999 No 446 >1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 intergenic region; yeast hypothetical protein, structural genomics, selenomethionine, PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1 Probab=25.79 E-value=16 Score=13.03 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=0.0 Q ss_pred CCCEEEEEEECCCCC Q ss_conf 433799997078862 Q gi|254781225|r 499 KAQRFIHIRGVGGSG 513 (789) Q Consensus 499 ~~~~~~~~~G~G~nG 513 (789) +.+.++++.|+|+|| T Consensus 57 ~~~~i~il~G~GNNG 71 (246) T 1jzt_A 57 KGKHVFVIAGPGNNG 71 (246) T ss_dssp HTCEEEEEECSSHHH T ss_pred CCCEEEEEECCCCCC T ss_conf 688599997899984 No 447 >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Probab=25.32 E-value=21 Score=12.37 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHHHHHHCCCC-----------CCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 999999999999999975987-----------433799997078862578999999972 Q gi|254781225|r 478 ESEEVMDYFTRCVGMALLGGN-----------KAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 478 ~d~e~~~~l~~~~g~~l~g~~-----------~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) +.+.+++.+.+.+.-.|-+.. .....+++.|+.|.||+|.+-=|...+ T Consensus 95 ~~~~l~~~l~~~L~~ll~~~~~~~~~~~~~~~~~p~Vi~~vG~~G~GKTTt~aKlA~~~ 153 (328) T 3e70_C 95 KGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328) T ss_dssp -CHHHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHH T ss_conf 79999999999999874543332202332036898699997687788654389999999 No 448 >3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale} Probab=24.43 E-value=21 Score=12.26 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=0.0 Q ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 987433799997078862578999999972 Q gi|254781225|r 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 496 g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ....-+...+.-+.||-||||+.-.+...| T Consensus 139 ~~~~~kvI~V~S~kGGvGKTT~A~~LA~~L 168 (373) T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAH 168 (373) T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHHH T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 689987999989999951999999999999 No 449 >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Probab=23.32 E-value=23 Score=12.12 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=0.0 Q ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHH Q ss_conf 759874337999970788625789999999 Q gi|254781225|r 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 (789) Q Consensus 494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ 523 (789) ++|+-...-+.++.|..+.|||+|+.-+.. T Consensus 193 ~~~G~~~g~l~vi~a~pg~GKT~~~~~~a~ 222 (444) T 2q6t_A 193 LIGTLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444) T ss_dssp HHCCCCTTCEEEEEECTTSCHHHHHHHHHH T ss_pred HHCCCCCCCEEEEEEECCCCCHHHHHHHHH T ss_conf 846878884899983046662188887899 No 450 >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Probab=23.19 E-value=23 Score=12.10 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=0.0 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 874337999970788625789999999723 Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) ..+...=+.+.|.-..|||||+..|...+| T Consensus 173 ~~k~~~ni~v~Ghvd~GKsTl~g~ll~~~G 202 (592) T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELG 202 (592) T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHH T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHCC T ss_conf 998822899994679788899999998728 No 451 >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032} Probab=23.11 E-value=23 Score=12.09 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=0.0 Q ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 99999997598743379999707886257899999997 Q gi|254781225|r 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 (789) Q Consensus 487 ~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~l 524 (789) |+.+--+| ....+.++.|+.|+|| ||+-+...+ T Consensus 12 Q~~~~~al----~~~~iv~~~G~AGTGK-T~la~~~al 44 (208) T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGK-TYLAMAKAV 44 (208) T ss_dssp HHHHHHHH----HHCSEEEEECCTTSST-THHHHHHHH T ss_pred HHHHHHHH----CCCCEEEEECCCCCCH-HHHHHHHHH T ss_conf 99999986----3598189987999739-999999999 No 452 >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Probab=23.06 E-value=23 Score=12.09 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=0.0 Q ss_pred EEEEEEECC-CCCHHHHHHHHHHHH Q ss_conf 799997078-862578999999972 Q gi|254781225|r 502 RFIHIRGVG-GSGKSTLMNLIKYAF 525 (789) Q Consensus 502 ~~~~~~G~G-~nGKSt~~~~l~~ll 525 (789) ..+|..|++ +-||||+.-.|...| T Consensus 27 ~~lfItGT~TgVGKT~Vs~~L~~aL 51 (251) T 3fgn_A 27 TILVVTGTGTGVGKTVVCAALASAA 51 (251) T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHH T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH T ss_conf 8689986999961999999999999 No 453 >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A Probab=22.87 E-value=23 Score=12.06 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHCCCC-----CCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 9999999999999975987-----433799997078862578999999972 Q gi|254781225|r 480 EEVMDYFTRCVGMALLGGN-----KAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 480 ~e~~~~l~~~~g~~l~g~~-----~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) +.++..+.+.+--.|.+.. .....+++.|..|.||+|.+--+...+ T Consensus 72 ~~i~~~v~eeL~~~l~~~~~~~~~~~p~VIl~vG~~G~GKTTT~aKLA~~~ 122 (425) T 2ffh_A 72 EVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYY 122 (425) T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCCSSEEEEEECCTTSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH T ss_conf 999999999998500554345456897389996678876100899999999 No 454 >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 3fic_Z* 1b23_P* 1ob5_A* 1ttt_A* 1tui_A* 1zc8_Y 1eft_A* 1mj1_A* 1ob2_A* 1dg1_G* 1efc_A* 1ls2_A 1qzd_A 2bvn_A* ... Probab=22.53 E-value=23 Score=12.02 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=0.0 Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHC Q ss_conf 874337999970788625789999999723 Q gi|254781225|r 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 (789) Q Consensus 497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG 526 (789) +.+.+.-+...|.=..||||++..|....| T Consensus 7 ~~kp~~nivi~GHVD~GKSTL~g~Ll~~~~ 36 (405) T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAA 36 (405) T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHH T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHC T ss_conf 589869999991558708999999985542 No 455 >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Probab=22.49 E-value=23 Score=12.01 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=0.0 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCC Q ss_conf 3799997078862578999999972330 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~ 528 (789) +...+.-+.||-||||+.--+...+..+ T Consensus 3 kvI~v~s~KGGvGKTtia~nlA~~la~~ 30 (263) T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQL 30 (263) T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHT T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHC T ss_conf 6999989999871999999999999968 No 456 >3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A* Probab=22.29 E-value=24 Score=11.99 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=0.0 Q ss_pred CEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 3799997078862578999999972 Q gi|254781225|r 501 QRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 501 ~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) +.+.|. |.||=||||+.--|...| T Consensus 42 kiIAVa-GKGGVGKTTtsvNLA~aL 65 (307) T 3end_A 42 KVFAVY-GKGGIGKSTTSSNLSAAF 65 (307) T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHH T ss_conf 399998-998757999999999999 No 457 >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Probab=20.50 E-value=26 Score=11.75 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=0.0 Q ss_pred EEEEECCCCCHHHHHHHHHHH Q ss_conf 999707886257899999997 Q gi|254781225|r 504 IHIRGVGGSGKSTLMNLIKYA 524 (789) Q Consensus 504 ~~~~G~G~nGKSt~~~~l~~l 524 (789) ++++|+-|+||+++...|... T Consensus 28 vlI~Ge~GtGK~~~Ar~iH~~ 48 (304) T 1ojl_A 28 VLIHGDSGTGKELVARALHAC 48 (304) T ss_dssp EEEESCTTSCHHHHHHHHHHH T ss_pred EEEECCCCCCHHHHHHHHHHH T ss_conf 898898997799999999981 No 458 >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Probab=20.42 E-value=26 Score=11.74 Aligned_cols=47 Identities=9% Similarity=0.153 Sum_probs=0.0 Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 98887999999999999999975987433799997078862578999999972 Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) |..+++-++-++-+.+++. .+.+.=.+++|+.+-||+++++-+..-+ T Consensus 21 l~~~igRd~Ei~~l~~iL~------r~~k~n~lLVGepGVGKTaiV~~la~ri 67 (187) T 2p65_A 21 LDPVIGRDTEIRRAIQILS------RRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187) T ss_dssp SCCCCSCHHHHHHHHHHHT------SSSSCEEEEESCGGGCHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHH------CCCCCCCEEECCCCCCHHHHHHHHHHHH T ss_conf 9877482999999999985------6678996685588736799999999999 No 459 >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D* Probab=20.39 E-value=26 Score=11.73 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=0.0 Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 7433799997078862578999999972 Q gi|254781225|r 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 498 ~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) ......+++.|+-|.||+|.+-=|...+ T Consensus 99 ~~~~~vi~lvG~~G~GKTTt~aKlA~~~ 126 (304) T 1rj9_A 99 EPKGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304) T ss_dssp CCSSSEEEEECSTTSSHHHHHHHHHHHH T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHH T ss_conf 7887699952466777411899999998 No 460 >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} Probab=20.30 E-value=26 Score=11.72 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHH Q ss_conf 99999999999999759-------87433799997078862578999999972 Q gi|254781225|r 480 EEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 (789) Q Consensus 480 ~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~ll 525 (789) +.++..+.+-+--.|-+ ....+..+++.|..|.||+|.+--|...+ T Consensus 71 ~~i~kiv~~eL~~lLg~~~~~~~~~~~~p~VIllvGl~GsGKTTT~aKLA~~l 123 (432) T 2v3c_C 71 EHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYI 123 (432) T ss_dssp HHHHHHHHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH T ss_conf 99999999999987363101101378998699985798776214899999999 Done!