Query         gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 789
No_of_seqs    322 out of 861
Neff          8.2 
Searched_HMMs 23785
Date          Wed Jun  1 02:14:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781225.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1u0j_A DNA replication protein  99.9 6.1E-29 2.6E-33  208.5   0.5  216  431-671    40-262 (267)
  2 3m1m_A ORF904; primase, polyme  99.9 4.1E-24 1.7E-28  176.4   9.0  186    3-200     8-214 (335)
  3 1ro2_A Hypothetical protein OR  99.9   2E-23 8.3E-28  171.9   8.9  179    3-187     4-199 (216)
  4 1tue_A Replication protein E1;  99.7 3.5E-17 1.5E-21  130.4   7.7  159  461-638    22-182 (212)
  5 2v9p_A Replication protein E1;  99.6 2.3E-15 9.7E-20  118.3   7.4  176  446-641    76-253 (305)
  6 1dp7_P MHC class II transcript  98.4 8.3E-07 3.5E-11   61.5   8.0   75  694-773     2-76  (76)
  7 1svm_A Large T antigen; AAA+ f  97.4  0.0026 1.1E-07   38.3  11.3  146  469-632   140-297 (377)
  8 3eie_A Vacuolar protein sortin  97.0 0.00045 1.9E-08   43.3   3.9  153  475-633    19-182 (322)
  9 1in4_A RUVB, holliday junction  96.9 0.00085 3.6E-08   41.5   4.4  154  472-635    23-180 (334)
 10 3b9p_A CG5977-PA, isoform A; A  96.8 0.00039 1.6E-08   43.7   2.0  155  474-634    21-188 (297)
 11 3pfi_A Holliday junction ATP-d  96.7  0.0033 1.4E-07   37.6   6.1  154  472-635    27-184 (338)
 12 1njg_A DNA polymerase III subu  96.6  0.0052 2.2E-07   36.3   6.5  138  473-634    22-184 (250)
 13 2zan_A Vacuolar protein sortin  96.6  0.0018 7.5E-08   39.3   4.1  155  475-634   135-300 (444)
 14 3cf0_A Transitional endoplasmi  96.4   0.017   7E-07   32.9   8.0   95  475-569    16-119 (301)
 15 1hqc_A RUVB; extended AAA-ATPa  96.2  0.0025 1.1E-07   38.4   3.1  154  473-636    11-169 (324)
 16 1fnn_A CDC6P, cell division co  96.2  0.0022 9.4E-08   38.7   2.7  255  478-748    21-348 (389)
 17 3d8b_A Fidgetin-like protein 1  96.2 0.00092 3.8E-08   41.3   0.6  151  476-633    86-249 (357)
 18 2p5t_B PEZT; postsegregational  95.9   0.021 8.9E-07   32.2   6.8   55  477-531     6-62  (253)
 19 2qp9_X Vacuolar protein sortin  95.9  0.0035 1.5E-07   37.4   2.6  131  498-634    81-216 (355)
 20 1gvn_B Zeta; postsegregational  95.6   0.039 1.6E-06   30.5   7.1   53  477-529     7-61  (287)
 21 3h4m_A Proteasome-activating n  95.5   0.025 1.1E-06   31.7   5.9  152  476-634    19-187 (285)
 22 2chg_A Replication factor C sm  95.4  0.0023 9.7E-08   38.6   0.1  133  473-635    16-161 (226)
 23 1sxj_A Activator 1 95 kDa subu  95.4   0.031 1.3E-06   31.2   5.8   55  473-527    38-103 (516)
 24 2qz4_A Paraplegin; AAA+, SPG7,  95.3   0.039 1.6E-06   30.5   6.1   94  475-569     7-109 (262)
 25 1lv7_A FTSH; alpha/beta domain  95.2   0.018 7.6E-07   32.7   4.2   95  475-569    13-115 (257)
 26 1sxj_E Activator 1 40 kDa subu  95.2   0.013 5.3E-07   33.7   3.4   48  473-525    13-60  (354)
 27 1xwi_A SKD1 protein; VPS4B, AA  94.8   0.086 3.6E-06   28.2   6.8   96  474-569    12-116 (322)
 28 1ofh_A ATP-dependent HSL prote  94.7   0.021 8.9E-07   32.2   3.5  161  467-634     7-201 (310)
 29 2r62_A Cell division protease   94.5   0.038 1.6E-06   30.5   4.3   70  500-569    43-114 (268)
 30 1knq_A Gluconate kinase; ALFA/  94.4   0.043 1.8E-06   30.2   4.4   34  497-530     4-37  (175)
 31 1sxj_C Activator 1 40 kDa subu  94.4   0.046 1.9E-06   30.0   4.5  139  473-636    24-170 (340)
 32 1iy2_A ATP-dependent metallopr  94.3     0.1 4.4E-06   27.6   6.2  107  456-569    35-143 (278)
 33 2qt1_A Nicotinamide riboside k  94.1   0.041 1.7E-06   30.3   3.9   42  491-532    11-52  (207)
 34 1rz3_A Hypothetical protein rb  94.0    0.14 5.9E-06   26.8   6.4   46  481-529     5-50  (201)
 35 2r44_A Uncharacterized protein  94.0    0.14 5.7E-06   26.9   6.3   53  468-528    17-73  (331)
 36 1odf_A YGR205W, hypothetical 3  94.0    0.19 8.1E-06   25.8   7.1   43  483-525    13-55  (290)
 37 1qvr_A CLPB protein; coiled co  93.9    0.25 1.1E-05   25.1  10.7  141  468-612   551-710 (854)
 38 1d2n_A N-ethylmaleimide-sensit  93.9     0.2 8.3E-06   25.8   7.0   87  482-568    45-134 (272)
 39 1ye8_A Protein THEP1, hypothet  93.7   0.047   2E-06   29.9   3.5   26  504-529     3-28  (178)
 40 1ixz_A ATP-dependent metallopr  93.6    0.16 6.9E-06   26.3   6.2   71  498-569    46-119 (254)
 41 1sxj_B Activator 1 37 kDa subu  93.6   0.056 2.4E-06   29.4   3.8  140  473-636    20-167 (323)
 42 3hu3_A Transitional endoplasmi  93.4    0.15 6.4E-06   26.5   5.7   94  476-569   206-308 (489)
 43 1iqp_A RFCS; clamp loader, ext  93.3   0.074 3.1E-06   28.6   4.0  140  474-637    25-171 (327)
 44 1ly1_A Polynucleotide kinase;   93.1   0.075 3.2E-06   28.6   3.8   32  501-532     2-33  (181)
 45 3euj_A Chromosome partition pr  93.0   0.073 3.1E-06   28.7   3.7   14   75-88     39-52  (483)
 46 3c8u_A Fructokinase; YP_612366  93.0    0.19 7.8E-06   26.0   5.7   43  485-528     7-49  (208)
 47 1jr3_A DNA polymerase III subu  92.9    0.16 6.6E-06   26.5   5.2  139  473-635    15-178 (373)
 48 3ch4_B Pmkase, phosphomevalona  92.7    0.11 4.4E-06   27.6   4.1   32  500-531    10-41  (202)
 49 1qhx_A CPT, protein (chloramph  92.6   0.083 3.5E-06   28.3   3.4   29  501-529     3-31  (178)
 50 2i3b_A HCR-ntpase, human cance  92.4   0.069 2.9E-06   28.8   2.8   27  502-528     2-28  (189)
 51 2yvu_A Probable adenylyl-sulfa  92.3   0.078 3.3E-06   28.5   3.0   30  499-528    10-40  (186)
 52 2bdt_A BH3686; alpha-beta prot  92.2    0.11 4.5E-06   27.5   3.6   28  501-528     2-29  (189)
 53 1htw_A HI0065; nucleotide-bind  92.1    0.39 1.6E-05   23.8   6.4   64  477-540     8-72  (158)
 54 1sq5_A Pantothenate kinase; P-  92.1     0.4 1.7E-05   23.7   6.4   28  500-527    79-106 (308)
 55 3ohm_A Guanine nucleotide-bind  92.1    0.14 5.8E-06   26.8   4.0   17  510-526   302-318 (327)
 56 3m6a_A ATP-dependent protease   92.0    0.46 1.9E-05   23.3   9.9  198  470-689    76-298 (543)
 57 2chq_A Replication factor C sm  92.0   0.067 2.8E-06   28.9   2.4  139  474-636    17-162 (319)
 58 1uj2_A Uridine-cytidine kinase  91.9    0.12 5.1E-06   27.2   3.6   28  501-528    22-49  (252)
 59 2pcj_A ABC transporter, lipopr  91.8   0.066 2.8E-06   28.9   2.1   27  500-526    29-55  (224)
 60 2jeo_A Uridine-cytidine kinase  91.7     0.2 8.3E-06   25.8   4.5   32  497-528    21-52  (245)
 61 2rhm_A Putative kinase; ZP_007  91.7    0.19 7.9E-06   25.9   4.4   30  499-528     3-32  (193)
 62 3bos_A Putative DNA replicatio  91.6    0.49 2.1E-05   23.1   6.4   88  468-569    26-115 (242)
 63 2pez_A Bifunctional 3'-phospho  91.5    0.14   6E-06   26.7   3.6   29  502-530     6-34  (179)
 64 2x8a_A Nuclear valosin-contain  91.4    0.17   7E-06   26.3   3.9   71  499-569    42-114 (274)
 65 2oap_1 GSPE-2, type II secreti  91.3    0.22 9.4E-06   25.4   4.5   52  470-529   237-288 (511)
 66 1ltq_A Polynucleotide kinase;   91.3    0.17 7.2E-06   26.2   3.8   25  478-509   189-213 (301)
 67 1w36_D RECD, exodeoxyribonucle  91.3    0.28 1.2E-05   24.8   4.9   18  131-149   163-180 (608)
 68 1w5s_A ORC2; CDC6, DNA replica  91.2    0.55 2.3E-05   22.8   6.4  260  478-746    27-363 (412)
 69 2onk_A Molybdate/tungstate ABC  91.1     0.1 4.3E-06   27.7   2.5   25  503-527    26-50  (240)
 70 1cip_A Protein (guanine nucleo  91.0    0.16 6.8E-06   26.4   3.5   16  511-526   329-344 (353)
 71 1zp6_A Hypothetical protein AT  91.0    0.12 5.3E-06   27.1   2.9   30  501-530     9-38  (191)
 72 1r6b_X CLPA protein; AAA+, N-t  90.9    0.59 2.5E-05   22.6   9.7  161  447-612   425-607 (758)
 73 1sxj_D Activator 1 41 kDa subu  90.8   0.058 2.4E-06   29.3   1.0  140  473-636    36-193 (353)
 74 3cm0_A Adenylate kinase; ATP-b  90.5    0.22 9.3E-06   25.5   3.8   31  501-531     4-34  (186)
 75 1h65_A Chloroplast outer envel  90.4    0.35 1.5E-05   24.1   4.8   80  477-568    17-96  (270)
 76 1nks_A Adenylate kinase; therm  90.4    0.24 9.9E-06   25.3   3.9   27  502-528     2-28  (194)
 77 1kag_A SKI, shikimate kinase I  90.4    0.16 6.8E-06   26.4   3.0   29  501-529     4-32  (173)
 78 2qby_B CDC6 homolog 3, cell di  90.2    0.59 2.5E-05   22.6   5.8   51  474-526    20-70  (384)
 79 3kb2_A SPBC2 prophage-derived   90.2    0.23 9.7E-06   25.3   3.7   27  503-529     3-29  (173)
 80 3kta_A Chromosome segregation   90.1    0.28 1.2E-05   24.7   4.1   29  501-529    26-54  (182)
 81 1azs_C GS-alpha; complex (lyas  90.0     0.3 1.3E-05   24.6   4.1   16  511-526   370-385 (402)
 82 1znw_A Guanylate kinase, GMP k  89.9     0.2 8.4E-06   25.8   3.2   32  499-530    18-49  (207)
 83 1ypw_A Transitional endoplasmi  89.9     0.2 8.3E-06   25.8   3.1   72  498-569   508-581 (806)
 84 1w1w_A Structural maintenance   89.8    0.26 1.1E-05   25.0   3.7   19   72-90     33-51  (430)
 85 1g8p_A Magnesium-chelatase 38   89.7    0.12   5E-06   27.2   1.9  154  466-631    18-213 (350)
 86 1e6c_A Shikimate kinase; phosp  89.7    0.22 9.4E-06   25.4   3.3   27  504-530     5-31  (173)
 87 1l2t_A Hypothetical ABC transp  89.7    0.13 5.4E-06   27.0   2.0   22  503-524    33-54  (235)
 88 3a4m_A L-seryl-tRNA(SEC) kinas  89.6    0.27 1.1E-05   24.9   3.6   25  502-526     5-29  (260)
 89 1ukz_A Uridylate kinase; trans  89.5    0.36 1.5E-05   24.0   4.3   32  498-529    12-43  (203)
 90 2gza_A Type IV secretion syste  89.5    0.47   2E-05   23.3   4.8   83  435-526   116-200 (361)
 91 1zuh_A Shikimate kinase; alpha  89.5    0.24   1E-05   25.2   3.3   27  503-529     9-35  (168)
 92 2bwj_A Adenylate kinase 5; pho  89.4    0.27 1.2E-05   24.8   3.6   29  501-529    12-40  (199)
 93 2ocp_A DGK, deoxyguanosine kin  89.3    0.39 1.7E-05   23.8   4.3   30  501-530     2-31  (241)
 94 1w78_A FOLC bifunctional prote  89.2     0.4 1.7E-05   23.8   4.2   23  502-524   325-348 (422)
 95 1qf9_A UMP/CMP kinase, protein  89.2    0.36 1.5E-05   24.1   4.0   29  501-529     6-34  (194)
 96 3be4_A Adenylate kinase; malar  89.1    0.34 1.4E-05   24.2   3.9   42  674-717   168-212 (217)
 97 2iyv_A Shikimate kinase, SK; t  89.1    0.27 1.2E-05   24.8   3.4   26  503-528     4-29  (184)
 98 1tev_A UMP-CMP kinase; ploop,   89.1    0.35 1.5E-05   24.1   3.9   29  501-529     3-31  (196)
 99 2f1r_A Molybdopterin-guanine d  89.1    0.17 7.3E-06   26.1   2.3   29  501-529     2-30  (171)
100 1via_A Shikimate kinase; struc  89.0    0.23 9.6E-06   25.4   2.9   30  501-530     4-33  (175)
101 1yqt_A RNAse L inhibitor; ATP-  88.9    0.28 1.2E-05   24.8   3.3   30  498-527   309-338 (538)
102 2yz2_A Putative ABC transporte  88.9    0.16 6.7E-06   26.4   2.0   18  506-523    38-55  (266)
103 1lvg_A Guanylate kinase, GMP k  88.8    0.27 1.1E-05   24.9   3.2   30  501-530     4-33  (198)
104 1mv5_A LMRA, multidrug resista  88.7    0.23 9.6E-06   25.4   2.7   29  499-527    26-54  (243)
105 2c95_A Adenylate kinase 1; AP4  88.6    0.37 1.5E-05   24.0   3.8   31  499-529     7-37  (196)
106 3gd7_A Fusion complex of cysti  88.6    0.22 9.4E-06   25.4   2.6   20  432-451   220-240 (390)
107 3lw7_A Adenylate kinase relate  88.5    0.29 1.2E-05   24.7   3.1   23  502-524     2-24  (179)
108 2qag_A Septin-2, protein NEDD5  88.5    0.21 8.8E-06   25.6   2.4   25  501-528    37-61  (361)
109 2pt7_A CAG-ALFA; ATPase, prote  88.4    0.32 1.3E-05   24.4   3.3   38  480-525   158-195 (330)
110 2j41_A Guanylate kinase; GMP,   88.3    0.38 1.6E-05   23.9   3.7   31  499-529     4-34  (207)
111 2gks_A Bifunctional SAT/APS ki  88.2    0.95   4E-05   21.3   5.7   46  479-528   354-399 (546)
112 3a8t_A Adenylate isopentenyltr  88.2    0.28 1.2E-05   24.8   2.9   72  493-567    31-103 (339)
113 2it1_A 362AA long hypothetical  88.2    0.24 9.9E-06   25.3   2.5   10  131-140    28-37  (362)
114 2vli_A Antibiotic resistance p  88.2    0.25 1.1E-05   25.0   2.7   28  502-529     6-33  (183)
115 3iij_A Coilin-interacting nucl  88.2    0.34 1.4E-05   24.2   3.4   26  503-528    13-38  (180)
116 1sgw_A Putative ABC transporte  88.2    0.14 6.1E-06   26.7   1.4   27  501-527    35-61  (214)
117 2aka_B Dynamin-1; fusion prote  88.1    0.44 1.8E-05   23.5   3.8   42  482-523     7-48  (299)
118 3lnc_A Guanylate kinase, GMP k  88.0    0.17 7.3E-06   26.2   1.7   30  501-530    27-56  (231)
119 2vp4_A Deoxynucleoside kinase;  87.9    0.32 1.4E-05   24.4   3.1   32  498-529    17-48  (230)
120 2pt5_A Shikimate kinase, SK; a  87.8    0.37 1.5E-05   24.0   3.3   26  504-529     3-28  (168)
121 2rgx_A Adenylate kinase; trans  87.7    0.43 1.8E-05   23.6   3.6   28  503-530     2-29  (206)
122 3lxw_A GTPase IMAP family memb  87.7    0.29 1.2E-05   24.7   2.7   25  501-528    21-45  (247)
123 3dhw_C Methionine import ATP-b  87.6    0.22 9.5E-06   25.4   2.1   11  513-523   279-289 (343)
124 2qen_A Walker-type ATPase; unk  87.6    0.73 3.1E-05   22.0   4.7   44  475-526    13-56  (350)
125 1ii8_A RAD50 ABC-ATPase; MRE11  87.6     0.4 1.7E-05   23.7   3.4   27  501-527    23-49  (195)
126 2cbz_A Multidrug resistance-as  87.5    0.22 9.1E-06   25.5   2.0   24  502-525    32-55  (237)
127 3aez_A Pantothenate kinase; tr  87.5    0.57 2.4E-05   22.7   4.2   27  501-527    90-116 (312)
128 1kgd_A CASK, peripheral plasma  87.5    0.52 2.2E-05   23.0   3.9   30  499-528     3-32  (180)
129 2nq2_C Hypothetical ABC transp  87.5    0.22 9.4E-06   25.4   2.1   24  502-525    32-55  (253)
130 3gmt_A Adenylate kinase; ssgci  87.5    0.42 1.8E-05   23.6   3.5   30  499-528     6-35  (230)
131 2eyu_A Twitching motility prot  87.4    0.45 1.9E-05   23.4   3.5   28  500-527    24-51  (261)
132 2jaq_A Deoxyguanosine kinase;   87.3    0.47   2E-05   23.3   3.6   26  503-528     2-27  (205)
133 2cdn_A Adenylate kinase; phosp  87.2    0.42 1.8E-05   23.6   3.3   36  493-529    13-48  (201)
134 1kht_A Adenylate kinase; phosp  87.2     0.4 1.7E-05   23.8   3.2   27  502-528     4-30  (192)
135 2pjz_A Hypothetical protein ST  87.2    0.23 9.7E-06   25.3   2.0   23  503-525    32-54  (263)
136 3k1j_A LON protease, ATP-depen  87.1     0.7 2.9E-05   22.1   4.4   22  159-180   207-228 (604)
137 2qnr_A Septin-2, protein NEDD5  87.0    0.31 1.3E-05   24.5   2.6   20  503-522    20-39  (301)
138 2ccj_A DTMP kinase, thymidylat  87.0    0.54 2.3E-05   22.9   3.8   26  501-526     2-27  (205)
139 1yrb_A ATP(GTP)binding protein  86.8     0.6 2.5E-05   22.6   4.0   26  501-526    14-39  (262)
140 3a00_A Guanylate kinase, GMP k  86.8    0.43 1.8E-05   23.5   3.2   28  502-529     2-29  (186)
141 2bbs_A Cystic fibrosis transme  86.8    0.27 1.1E-05   24.9   2.1   11  508-518    71-81  (290)
142 3nh6_A ATP-binding cassette SU  86.8    0.19 8.2E-06   25.8   1.4   19  505-523    84-102 (306)
143 3e1s_A Exodeoxyribonuclease V,  86.8    0.83 3.5E-05   21.6   4.6   23  503-525   206-228 (574)
144 3ney_A 55 kDa erythrocyte memb  86.7    0.57 2.4E-05   22.7   3.8   29  501-529    19-47  (197)
145 2kjq_A DNAA-related protein; s  86.7    0.43 1.8E-05   23.6   3.1   59  499-569    34-94  (149)
146 3f8t_A Predicted ATPase involv  86.6    0.87 3.7E-05   21.5   4.7  134  469-613   205-349 (506)
147 2xtp_A GTPase IMAP family memb  86.5    0.39 1.6E-05   23.8   2.8   24  501-527    22-45  (260)
148 2pze_A Cystic fibrosis transme  86.5    0.27 1.1E-05   24.9   2.0   16  506-521    39-54  (229)
149 2w58_A DNAI, primosome compone  86.4    0.72   3E-05   22.1   4.1   68  501-568    54-125 (202)
150 2wwf_A Thymidilate kinase, put  86.3    0.64 2.7E-05   22.4   3.9   30  499-528     8-37  (212)
151 1uf9_A TT1252 protein; P-loop,  86.3    0.62 2.6E-05   22.5   3.8   29  497-526     4-32  (203)
152 4tmk_A Protein (thymidylate ki  86.2    0.55 2.3E-05   22.8   3.5   26  502-527     4-29  (213)
153 1e4v_A Adenylate kinase; trans  86.1    0.55 2.3E-05   22.8   3.5   24  504-527     3-26  (214)
154 2x2e_A Dynamin-1; nitration, h  86.1    0.41 1.7E-05   23.7   2.8   15  506-520    31-45  (341)
155 1y63_A LMAJ004144AAA protein;   86.1    0.58 2.4E-05   22.7   3.6   33  501-533    10-42  (184)
156 2plr_A DTMP kinase, probable t  85.8    0.66 2.8E-05   22.3   3.7   27  501-527     4-30  (213)
157 3b5x_A Lipid A export ATP-bind  85.8    0.33 1.4E-05   24.3   2.2   30  499-528   367-396 (582)
158 1zak_A Adenylate kinase; ATP:A  85.8    0.59 2.5E-05   22.6   3.5   27  503-529     7-33  (222)
159 1f2t_A RAD50 ABC-ATPase; DNA d  85.7    0.59 2.5E-05   22.6   3.4   27  501-527    23-49  (149)
160 3lxx_A GTPase IMAP family memb  85.6    0.47   2E-05   23.3   2.9   25  501-528    29-53  (239)
161 1ak2_A Adenylate kinase isoenz  85.5    0.58 2.5E-05   22.7   3.3   41  674-716   179-222 (233)
162 2qi9_C Vitamin B12 import ATP-  85.5     0.5 2.1E-05   23.1   3.0   27  499-525    24-50  (249)
163 1x6v_B Bifunctional 3'-phospho  85.4    0.66 2.8E-05   22.3   3.6   26  663-688   591-620 (630)
164 1m7g_A Adenylylsulfate kinase;  85.4    0.82 3.5E-05   21.7   4.1   28  499-526    23-50  (211)
165 3gee_A MNME, tRNA modification  85.2    0.76 3.2E-05   21.9   3.8   44  482-528   213-257 (476)
166 1ji0_A ABC transporter; ATP bi  85.1    0.35 1.5E-05   24.1   2.0   23  503-525    34-56  (240)
167 2ze6_A Isopentenyl transferase  85.1    0.81 3.4E-05   21.7   3.9   72  502-576     2-73  (253)
168 1a7j_A Phosphoribulokinase; tr  85.1    0.31 1.3E-05   24.4   1.8   28  503-530     7-34  (290)
169 1p9r_A General secretion pathw  85.1    0.52 2.2E-05   23.0   2.9   27  500-526   166-192 (418)
170 2pbr_A DTMP kinase, thymidylat  85.0     0.7 2.9E-05   22.1   3.5   24  503-526     2-25  (195)
171 3b60_A Lipid A export ATP-bind  85.0    0.44 1.8E-05   23.5   2.5   31  499-529   367-397 (582)
172 1aky_A Adenylate kinase; ATP:A  84.9    0.65 2.7E-05   22.4   3.3   41  674-716   168-211 (220)
173 3lv8_A DTMP kinase, thymidylat  84.9    0.71   3E-05   22.1   3.5   28  500-527    26-53  (236)
174 2qor_A Guanylate kinase; phosp  84.9    0.59 2.5E-05   22.6   3.1   27  503-529    14-40  (204)
175 3fb4_A Adenylate kinase; psych  84.8    0.67 2.8E-05   22.3   3.4   26  504-529     3-28  (216)
176 2h17_A ADP-ribosylation factor  84.7    0.65 2.7E-05   22.3   3.3   33  490-522    10-42  (181)
177 2h57_A ADP-ribosylation factor  84.6    0.55 2.3E-05   22.8   2.9   34  488-521     8-41  (190)
178 2v1u_A Cell division control p  84.4     0.6 2.5E-05   22.6   3.0   48  477-526    22-69  (387)
179 2woj_A ATPase GET3; tail-ancho  84.3    0.94   4E-05   21.3   4.0   13  516-528   326-338 (354)
180 1zd8_A GTP:AMP phosphotransfer  84.3    0.72   3E-05   22.0   3.4   41  675-718   165-208 (227)
181 2ged_A SR-beta, signal recogni  84.3     1.2 5.2E-05   20.5   4.5   21  503-523    50-70  (193)
182 2fna_A Conserved hypothetical   84.2    0.86 3.6E-05   21.5   3.7   43  475-527    14-56  (357)
183 1ka8_A Putative P4-specific DN  84.0     1.5 6.5E-05   19.9   5.7   80  689-773     1-91  (100)
184 3jvv_A Twitching mobility prot  84.0    0.83 3.5E-05   21.6   3.5   26  500-525   122-147 (356)
185 3ec2_A DNA replication protein  83.9     1.5 6.5E-05   19.8   8.1   70  500-569    37-111 (180)
186 2xb4_A Adenylate kinase; ATP-b  83.8    0.78 3.3E-05   21.8   3.3   25  504-528     3-27  (223)
187 2qpt_A EH domain-containing pr  83.7    0.69 2.9E-05   22.2   3.0   13  514-526   382-394 (550)
188 1z6g_A Guanylate kinase; struc  83.7    0.87 3.6E-05   21.5   3.6   26  504-529    26-51  (218)
189 2p67_A LAO/AO transport system  83.6     1.6 6.7E-05   19.8   6.7   44  481-525    37-80  (341)
190 3foz_A TRNA delta(2)-isopenten  83.5    0.65 2.8E-05   22.3   2.9   15  504-518    13-27  (316)
191 1s96_A Guanylate kinase, GMP k  83.4    0.76 3.2E-05   21.9   3.2   27  501-527    16-42  (219)
192 2ewv_A Twitching motility prot  83.3    0.93 3.9E-05   21.3   3.6   27  500-526   135-161 (372)
193 1m8p_A Sulfate adenylyltransfe  83.3     1.4   6E-05   20.1   4.5   58  466-527   359-422 (573)
194 2qby_A CDC6 homolog 1, cell di  83.1    0.63 2.6E-05   22.4   2.6   42  704-748   301-345 (386)
195 2qm8_A GTPase/ATPase; G protei  83.0     1.7 7.1E-05   19.6   6.5   44  481-525    36-79  (337)
196 1yj5_A 5' polynucleotide kinas  82.7    0.78 3.3E-05   21.8   3.0   26  498-523   222-247 (383)
197 2v54_A DTMP kinase, thymidylat  82.5       1 4.2E-05   21.1   3.5   29  501-529     4-32  (204)
198 1p5z_B DCK, deoxycytidine kina  82.3     0.5 2.1E-05   23.1   1.9   35  500-534    23-57  (263)
199 1nn5_A Similar to deoxythymidy  82.3    0.97 4.1E-05   21.2   3.3   29  500-528     8-36  (215)
200 1q3t_A Cytidylate kinase; nucl  82.2    0.85 3.6E-05   21.6   3.1   32  498-529    12-44  (236)
201 2z0h_A DTMP kinase, thymidylat  82.2     1.1 4.5E-05   20.9   3.5   23  503-525     2-24  (197)
202 3iby_A Ferrous iron transport   82.1    0.86 3.6E-05   21.5   3.0   20  504-523     4-23  (256)
203 1dek_A Deoxynucleoside monopho  82.0     1.2   5E-05   20.6   3.7   26  503-528     3-28  (241)
204 3tmk_A Thymidylate kinase; pho  81.9     1.1 4.7E-05   20.8   3.5   27  501-527     5-31  (216)
205 1jwy_B Dynamin A GTPase domain  81.8    0.84 3.5E-05   21.6   2.9   20  503-522    26-45  (315)
206 3crm_A TRNA delta(2)-isopenten  81.8    0.75 3.1E-05   21.9   2.6   23  503-525     7-29  (323)
207 3dl0_A Adenylate kinase; phosp  81.7       1 4.3E-05   21.1   3.3   27  504-530     3-29  (216)
208 3def_A T7I23.11 protein; chlor  81.6     1.9 7.9E-05   19.3   5.4   43  483-529    19-61  (262)
209 3bk7_A ABC transporter ATP-bin  81.6     0.7   3E-05   22.1   2.4   29  498-526   379-407 (607)
210 2grj_A Dephospho-COA kinase; T  81.3     1.4   6E-05   20.1   4.0   30  498-527     9-38  (192)
211 3ld9_A DTMP kinase, thymidylat  81.2     1.2 4.8E-05   20.7   3.4   27  501-527    21-47  (223)
212 2if2_A Dephospho-COA kinase; a  81.2     1.1 4.6E-05   20.8   3.3   22  504-526     4-25  (204)
213 2bbw_A Adenylate kinase 4, AK4  81.1     1.1 4.8E-05   20.7   3.3   43  675-720   185-230 (246)
214 2vhj_A Ntpase P4, P4; non- hyd  81.0    0.79 3.3E-05   21.8   2.5   71  499-569   121-193 (331)
215 2woo_A ATPase GET3; tail-ancho  80.9     1.2 5.1E-05   20.5   3.5   17  503-519    21-37  (329)
216 3iqw_A Tail-anchored protein t  80.7     1.2 5.2E-05   20.5   3.4   10   63-72     45-54  (334)
217 3nrs_A Dihydrofolate:folylpoly  80.0     2.1   9E-05   18.9   5.0   12  500-511   344-355 (437)
218 2r2a_A Uncharacterized protein  79.9     1.4 5.9E-05   20.1   3.5   29  499-527     3-31  (199)
219 2wsm_A Hydrogenase expression/  79.8     1.4 5.8E-05   20.2   3.4   26  502-527    31-56  (221)
220 2cxx_A Probable GTP-binding pr  79.6     1.1 4.8E-05   20.7   3.0   19  504-522     4-22  (190)
221 1qhl_A Protein (cell division   79.6    0.29 1.2E-05   24.7  -0.1   26  503-528    29-54  (227)
222 2dyk_A GTP-binding protein; GT  79.4     1.2 5.2E-05   20.5   3.1   19  504-522     4-22  (161)
223 1nrj_B SR-beta, signal recogni  79.4     1.3 5.3E-05   20.4   3.1   23  500-522    11-33  (218)
224 3geh_A MNME, tRNA modification  79.3     1.1 4.5E-05   20.9   2.8   26  499-524   222-247 (462)
225 2fh5_B SR-beta, signal recogni  79.3     1.3 5.6E-05   20.3   3.2   25  499-523     5-29  (214)
226 1tq4_A IIGP1, interferon-induc  79.2     1.2 5.1E-05   20.5   3.0   23  501-523    69-91  (413)
227 1wb9_A DNA mismatch repair pro  78.9     1.7 7.3E-05   19.5   3.7   74  500-573   606-701 (800)
228 1g8f_A Sulfate adenylyltransfe  78.5     2.4 9.9E-05   18.6   4.8   56  467-526   359-420 (511)
229 2hf9_A Probable hydrogenase ni  78.5     1.4 6.1E-05   20.0   3.2   24  502-525    39-62  (226)
230 1svi_A GTP-binding protein YSX  78.4     1.3 5.5E-05   20.3   3.0   20  503-522    25-44  (195)
231 2wjg_A FEOB, ferrous iron tran  78.4       2 8.4E-05   19.1   3.9   23  500-522     6-28  (188)
232 3p32_A Probable GTPase RV1496/  78.3     2.4  0.0001   18.6   6.5   58  467-525    30-103 (355)
233 3cr8_A Sulfate adenylyltranfer  78.3     2.4  0.0001   18.6   5.2   57  467-527   333-395 (552)
234 3io3_A DEHA2D07832P; chaperone  78.2     1.5 6.5E-05   19.9   3.3   17  502-518    19-35  (348)
235 2o8b_B DNA mismatch repair pro  78.1     1.9 7.8E-05   19.3   3.7   83  500-582   788-898 (1022)
236 2iw3_A Elongation factor 3A; a  77.9     1.6 6.9E-05   19.7   3.4   22  504-525   702-723 (986)
237 3a1s_A Iron(II) transport prot  77.9     1.4 5.7E-05   20.2   2.9   19  504-522     8-26  (258)
238 1u0l_A Probable GTPase ENGC; p  77.9     1.3 5.3E-05   20.4   2.8   21  502-522   170-190 (301)
239 3i8s_A Ferrous iron transport   77.4     1.5 6.2E-05   20.0   3.0   19  504-522     6-24  (274)
240 1ega_A Protein (GTP-binding pr  77.2     1.7 7.1E-05   19.6   3.2   17  504-520    11-27  (301)
241 1jjv_A Dephospho-COA kinase; P  77.1     1.6 6.9E-05   19.7   3.2   24  503-527     4-27  (206)
242 2o8b_A DNA mismatch repair pro  77.0     1.9   8E-05   19.2   3.5   25  500-524   661-685 (934)
243 1lw7_A Transcriptional regulat  77.0     2.6 0.00011   18.3   5.1   24  503-526   172-195 (365)
244 1gtv_A TMK, thymidylate kinase  76.9     1.1 4.8E-05   20.7   2.3   25  503-527     2-26  (214)
245 3hdt_A Putative kinase; struct  76.7     2.6 0.00011   18.3   4.1   28  500-527    13-40  (223)
246 1f5n_A Interferon-induced guan  76.7     1.8 7.5E-05   19.4   3.3   20  134-153    65-84  (592)
247 2dpx_A GTP-binding protein RAD  76.7     1.9 8.2E-05   19.2   3.4   24  498-521     3-27  (174)
248 1zd9_A ADP-ribosylation factor  76.6     2.2 9.2E-05   18.8   3.7   31  492-522    12-43  (188)
249 1ky3_A GTP-binding protein YPT  76.6     1.7 7.1E-05   19.6   3.1   20  504-523    11-30  (182)
250 1ihu_A Arsenical pump-driving   76.4     1.9 8.1E-05   19.2   3.4   29  499-527   325-353 (589)
251 1ewq_A DNA mismatch repair pro  76.0     2.1 8.8E-05   19.0   3.5  156  501-687   576-759 (765)
252 1z0f_A RAB14, member RAS oncog  76.0     2.4  0.0001   18.5   3.8   33  490-522     3-36  (179)
253 3g5u_A MCG1178, multidrug resi  76.0    0.88 3.7E-05   21.5   1.5   26  502-527  1060-1085(1284)
254 2o5v_A DNA replication and rep  75.6     2.8 0.00012   18.1   4.3   12  606-617   323-334 (359)
255 2yv5_A YJEQ protein; hydrolase  75.5     1.8 7.6E-05   19.4   3.0   23  502-527   166-188 (302)
256 3llu_A RAS-related GTP-binding  75.2     1.9 7.9E-05   19.3   3.0   19  504-522    23-41  (196)
257 3iev_A GTP-binding protein ERA  75.1       2 8.5E-05   19.1   3.2   20  503-522    12-31  (308)
258 3lx5_A Ferrous iron uptake tra  75.1     1.8 7.6E-05   19.4   2.9   19  504-522     6-24  (272)
259 2npi_A Protein CLP1; CLP1-PCF1  75.0     2.1 8.6E-05   19.0   3.2   11  555-565   395-405 (460)
260 2rcn_A Probable GTPase ENGC; Y  75.0     1.7   7E-05   19.6   2.7   21  502-522   216-236 (358)
261 1upt_A ARL1, ADP-ribosylation   74.7       2 8.5E-05   19.1   3.1   22  501-522     7-28  (171)
262 1nlf_A Regulatory protein REPA  74.7       2 8.5E-05   19.1   3.1   22  501-522    30-51  (279)
263 2qu8_A Putative nucleolar GTP-  74.4     1.8 7.5E-05   19.4   2.8   23  500-522    28-50  (228)
264 2gj8_A MNME, tRNA modification  74.4       2 8.5E-05   19.1   3.0   19  504-522     7-25  (172)
265 1m2o_B GTP binding, GTP-bindin  74.2     2.3 9.8E-05   18.6   3.3   24  500-523    22-45  (190)
266 2hxs_A RAB-26, RAS-related pro  74.2     2.7 0.00011   18.2   3.6   25  497-521     2-26  (178)
267 3h2y_A GTPase family protein;   73.8     3.1 0.00013   17.8   4.2   23  504-526   163-185 (368)
268 2c9o_A RUVB-like 1; hexameric   73.6     3.2 0.00013   17.8   6.1   25  502-526    64-88  (456)
269 2hyd_A ABC transporter homolog  73.5    0.72   3E-05   22.1   0.6   31  499-529   365-395 (578)
270 1cke_A CK, MSSA, protein (cyti  73.4     2.8 0.00012   18.1   3.6   28  503-530     7-34  (227)
271 1g16_A RAS-related protein SEC  73.0     2.5  0.0001   18.5   3.2   19  504-522     6-24  (170)
272 1oix_A RAS-related protein RAB  73.0     2.5  0.0001   18.5   3.2   20  504-523    32-51  (191)
273 2efe_B Small GTP-binding prote  72.8       3 0.00013   18.0   3.6   30  493-522     4-33  (181)
274 1ksh_A ARF-like protein 2; sma  72.7     2.1 8.8E-05   19.0   2.8   25  501-528    18-42  (186)
275 1fzq_A ADP-ribosylation factor  72.6     3.2 0.00013   17.8   3.7   23  499-521    14-36  (181)
276 2ga8_A Hypothetical 39.9 kDa p  72.1     3.4 0.00014   17.5   5.8   44  481-526     6-49  (359)
277 3k53_A Ferrous iron transport   71.8     2.6 0.00011   18.4   3.1   19  504-522     6-24  (271)
278 1f6b_A SAR1; gtpases, N-termin  71.8     3.1 0.00013   17.9   3.5   21  501-521    25-45  (198)
279 2wji_A Ferrous iron transport   71.7     2.4  0.0001   18.5   2.9   21  502-522     4-24  (165)
280 2h92_A Cytidylate kinase; ross  71.5       2 8.2E-05   19.2   2.4   26  504-529     6-31  (219)
281 1vg8_A RAS-related protein RAB  71.4     2.7 0.00011   18.3   3.1   20  504-523    11-30  (207)
282 1l8q_A Chromosomal replication  71.2     3.1 0.00013   17.9   3.3  112  504-628    40-157 (324)
283 2e87_A Hypothetical protein PH  71.2     2.4   1E-04   18.6   2.8   22  502-523   168-189 (357)
284 1xjc_A MOBB protein homolog; s  70.9     3.2 0.00014   17.7   3.4   26  502-527     5-30  (169)
285 2fn4_A P23, RAS-related protei  70.5     3.7 0.00016   17.3   4.2   25  499-523     7-31  (181)
286 1vht_A Dephospho-COA kinase; s  70.4     3.6 0.00015   17.4   3.5   24  502-526     5-28  (218)
287 1zj6_A ADP-ribosylation factor  70.3     3.8 0.00016   17.3   3.8   22  501-522    16-37  (187)
288 2bme_A RAB4A, RAS-related prot  70.1     3.1 0.00013   17.8   3.2   20  504-523    13-32  (186)
289 2qgz_A Helicase loader, putati  70.0     3.8 0.00016   17.2   8.2   82  488-569   139-225 (308)
290 3bc1_A RAS-related protein RAB  70.0     3.8 0.00016   17.2   4.0   22  501-522    11-32  (195)
291 2x77_A ADP-ribosylation factor  69.8     1.9   8E-05   19.2   2.0   27  494-521    16-42  (189)
292 3ec1_A YQEH GTPase; atnos1, at  69.6     3.1 0.00013   17.8   3.1   22  504-525   165-186 (369)
293 1z06_A RAS-related protein RAB  69.6     3.1 0.00013   17.8   3.1   20  503-522    22-41  (189)
294 1t9h_A YLOQ, probable GTPase E  69.5     1.3 5.6E-05   20.3   1.2   21  501-521   173-193 (307)
295 3eag_A UDP-N-acetylmuramate:L-  69.2       2 8.5E-05   19.1   2.1   21  507-527   111-132 (326)
296 2ehv_A Hypothetical protein PH  69.1     3.6 0.00015   17.4   3.3   31  494-524    23-54  (251)
297 2ce2_X GTPase HRAS; signaling   69.1     3.4 0.00014   17.6   3.2   20  504-523     6-25  (166)
298 1yzq_A Small GTP binding prote  69.1     3.6 0.00015   17.4   3.3   22  502-523     7-28  (170)
299 1jal_A YCHF protein; nucleotid  69.0     2.6 0.00011   18.3   2.6   10  482-491   269-278 (363)
300 1pui_A ENGB, probable GTP-bind  69.0     1.4 6.1E-05   20.0   1.3   20  502-521    27-46  (210)
301 2a5y_B CED-4; apoptosis; HET:   69.0       4 0.00017   17.1   6.5   44  477-523   131-174 (549)
302 2px0_A Flagellar biosynthesis   68.9       4 0.00017   17.1   5.0   46  479-524    78-128 (296)
303 1r8s_A ADP-ribosylation factor  68.4     3.4 0.00014   17.5   3.1   19  504-522     3-21  (164)
304 1r2q_A RAS-related protein RAB  68.4     4.1 0.00017   17.0   3.6   19  504-522     9-27  (170)
305 3iyt_A APAF-1, apoptotic prote  68.2     4.1 0.00017   17.0   5.1   10   63-72    186-195 (1263)
306 2b6h_A ADP-ribosylation factor  68.0     3.2 0.00013   17.8   2.9   19  503-521    31-49  (192)
307 2f6r_A COA synthase, bifunctio  67.9     4.2 0.00018   17.0   4.1   26  501-527    75-100 (281)
308 2oil_A CATX-8, RAS-related pro  67.8     3.5 0.00015   17.5   3.1   20  504-523    28-47  (193)
309 1xzp_A Probable tRNA modificat  67.7     2.1 8.8E-05   19.0   1.9   25  499-523   241-265 (482)
310 2ew1_A RAS-related protein RAB  67.4     3.9 0.00016   17.2   3.2   19  504-522    29-47  (201)
311 1p6x_A Thymidine kinase; P-loo  67.2     3.9 0.00016   17.2   3.2   22   65-86      7-28  (334)
312 2qtf_A Protein HFLX, GTP-bindi  67.2     3.4 0.00014   17.6   2.9   23  501-523   179-201 (364)
313 2f9l_A RAB11B, member RAS onco  67.1     3.7 0.00016   17.3   3.1   19  504-522     8-26  (199)
314 2www_A Methylmalonic aciduria   67.1     4.4 0.00018   16.9   7.2   30  498-527    71-101 (349)
315 2g6b_A RAS-related protein RAB  66.9     3.8 0.00016   17.2   3.1   19  504-522    13-31  (180)
316 2w0m_A SSO2452; RECA, SSPF, un  66.9     4.4 0.00019   16.8   3.5   28  494-521    16-43  (235)
317 3dz8_A RAS-related protein RAB  66.6     4.1 0.00017   17.0   3.2   18  504-521    26-43  (191)
318 1j6u_A UDP-N-acetylmuramate-al  66.6     2.4  0.0001   18.5   2.0   15   10-24     29-43  (469)
319 1ek0_A Protein (GTP-binding pr  66.5       4 0.00017   17.1   3.1   19  504-522     6-24  (170)
320 1z08_A RAS-related protein RAB  66.3       4 0.00017   17.1   3.1   19  504-522     9-27  (170)
321 1c1y_A RAS-related protein RAP  66.2       4 0.00017   17.1   3.1   19  504-522     6-24  (167)
322 2zej_A Dardarin, leucine-rich   66.2     3.4 0.00014   17.6   2.7   18  504-521     5-22  (184)
323 1g41_A Heat shock protein HSLU  66.0     4.6 0.00019   16.7   3.5   13  557-569   249-261 (444)
324 3o47_A ADP-ribosylation factor  65.9     2.9 0.00012   18.0   2.3   23  499-521   163-185 (329)
325 2dr3_A UPF0273 protein PH0284;  65.9     4.6 0.00019   16.7   3.6   32  494-525    16-48  (247)
326 1moz_A ARL1, ADP-ribosylation   65.7     2.6 0.00011   18.4   2.0   27  494-521    12-38  (183)
327 2p5s_A RAS and EF-hand domain   65.6     4.1 0.00017   17.0   3.1   20  503-522    30-49  (199)
328 3lvq_E ARF-GAP with SH3 domain  65.4     4.7  0.0002   16.6   3.7   28  495-522   316-343 (497)
329 1x3s_A RAS-related protein RAB  65.1     4.4 0.00018   16.8   3.1   20  504-523    18-37  (195)
330 3igf_A ALL4481 protein; two-do  64.7     3.4 0.00014   17.5   2.5   10  623-632   357-366 (374)
331 2am1_A SP protein, UDP-N-acety  64.7     2.3 9.7E-05   18.7   1.6   11  579-589   427-437 (454)
332 2erx_A GTP-binding protein DI-  64.7     4.1 0.00017   17.0   2.9   19  504-522     6-24  (172)
333 3f9v_A Minichromosome maintena  64.4     0.8 3.4E-05   21.7  -0.8  129  485-615   302-446 (595)
334 1z0j_A RAB-22, RAS-related pro  64.2     4.9 0.00021   16.5   3.8   23  500-522     5-27  (170)
335 2gco_A H9, RHO-related GTP-bin  64.1     4.9 0.00021   16.5   3.2   20  503-522    27-46  (201)
336 2gf9_A RAS-related protein RAB  64.0     4.7  0.0002   16.6   3.1   33  491-523    11-44  (189)
337 3cbq_A GTP-binding protein REM  63.7     3.3 0.00014   17.7   2.3   17  504-520    26-42  (195)
338 3fdi_A Uncharacterized protein  63.7     4.5 0.00019   16.7   3.0   28  500-527     4-32  (201)
339 2qmh_A HPR kinase/phosphorylas  63.6     4.8  0.0002   16.6   3.1   18  501-518    34-51  (205)
340 3gj0_A GTP-binding nuclear pro  63.6     4.6 0.00019   16.7   3.0   28  495-522     9-36  (221)
341 1u8z_A RAS-related protein RAL  63.5     4.9 0.00021   16.5   3.1   18  504-521     7-24  (168)
342 1of1_A Thymidine kinase; trans  63.4     2.9 0.00012   18.1   1.9   19  651-669   303-321 (376)
343 2wtz_A UDP-N-acetylmuramoyl-L-  63.0     5.2 0.00022   16.4   5.0   15  578-592   489-503 (535)
344 2f00_A UDP-N-acetylmuramate--L  62.9     3.2 0.00013   17.8   2.1   13   10-22     36-48  (491)
345 1n0w_A DNA repair protein RAD5  62.9     5.2 0.00022   16.3   3.4   29  494-522    17-45  (243)
346 3con_A GTPase NRAS; structural  62.9     5.1 0.00021   16.4   3.1   20  504-523    24-43  (190)
347 2g3y_A GTP-binding protein GEM  62.8     4.7  0.0002   16.6   2.9   19  504-522    40-58  (211)
348 2a9k_A RAS-related protein RAL  62.3     5.3 0.00022   16.3   3.1   19  504-522    21-39  (187)
349 3ihw_A Centg3; RAS, centaurin,  62.3     5.3 0.00022   16.3   3.1   21  502-522    21-41  (184)
350 3hn7_A UDP-N-acetylmuramate-L-  62.3     3.3 0.00014   17.7   2.0   15   10-24     36-50  (524)
351 2o52_A RAS-related protein RAB  62.2     5.2 0.00022   16.4   3.0   19  504-522    28-46  (200)
352 1e2k_A Thymidine kinase; trans  62.2     2.4  0.0001   18.5   1.4   19  651-669   258-276 (331)
353 2cvh_A DNA repair and recombin  62.0     5.4 0.00023   16.2   4.1   29  493-521    12-40  (220)
354 1np6_A Molybdopterin-guanine d  61.8     5.1 0.00021   16.4   3.0   26  502-527     7-32  (174)
355 1mky_A Probable GTP-binding pr  61.8       5 0.00021   16.4   2.9   22  502-523   181-202 (439)
356 3bwd_D RAC-like GTP-binding pr  61.5     5.5 0.00023   16.2   3.1   20  503-522    10-29  (182)
357 1osn_A Thymidine kinase, VZV-T  61.5     5.5 0.00023   16.2   3.4   21   65-85     12-32  (341)
358 3cpj_B GTP-binding protein YPT  61.1     5.6 0.00023   16.2   3.0   19  504-522    16-34  (223)
359 2j1l_A RHO-related GTP-binding  61.1     5.5 0.00023   16.2   3.0   21  501-521    34-54  (214)
360 1udx_A The GTP-binding protein  61.0       4 0.00017   17.1   2.3   15  126-140   104-119 (416)
361 2f7s_A C25KG, RAS-related prot  61.0     5.2 0.00022   16.4   2.9   21  502-522    26-46  (217)
362 3cnl_A YLQF, putative uncharac  60.9     5.6 0.00024   16.1   3.0   60  457-522    55-120 (262)
363 2il1_A RAB12; G-protein, GDP,   60.8       5 0.00021   16.4   2.8   19  503-521    28-46  (192)
364 3cph_A RAS-related protein SEC  60.4     5.7 0.00024   16.1   3.1   19  504-522    23-41  (213)
365 1lnz_A SPO0B-associated GTP-bi  60.3     3.7 0.00015   17.3   2.0   15  126-140   105-120 (342)
366 1zbd_A Rabphilin-3A; G protein  60.2     5.6 0.00024   16.1   2.9   18  504-521    11-28  (203)
367 2gk6_A Regulator of nonsense t  60.0     5.9 0.00025   16.0   5.2   13  660-672   484-496 (624)
368 1xtq_A GTP-binding protein RHE  59.9     5.9 0.00025   16.0   3.2   20  503-522     8-27  (177)
369 1e9r_A Conjugal transfer prote  59.5     5.1 0.00021   16.4   2.6   40  488-531   327-366 (437)
370 1m7b_A RND3/RHOE small GTP-bin  59.5       6 0.00025   16.0   3.7   22  501-522     7-28  (184)
371 2atx_A Small GTP binding prote  59.4       6 0.00025   15.9   3.2   19  504-522    21-39  (194)
372 1e8c_A UDP-N-acetylmuramoylala  59.3       6 0.00025   15.9   4.1   20  578-597   451-470 (498)
373 2bov_A RAla, RAS-related prote  59.2       6 0.00025   15.9   3.8   22  501-522    13-35  (206)
374 1gwn_A RHO-related GTP-binding  58.7     6.1 0.00026   15.9   3.7   21  501-521    28-48  (205)
375 2fu5_C RAS-related protein RAB  58.5     3.2 0.00013   17.8   1.4   19  504-522    11-29  (183)
376 2nzj_A GTP-binding protein REM  58.2     6.3 0.00026   15.8   2.9   18  504-521     7-24  (175)
377 3kkq_A RAS-related protein M-R  57.8     6.4 0.00027   15.8   3.1   21  503-523    20-40  (183)
378 1wms_A RAB-9, RAB9, RAS-relate  57.6     6.4 0.00027   15.7   3.1   19  504-522    10-28  (177)
379 2a5j_A RAS-related protein RAB  57.2     6.5 0.00027   15.7   3.1   19  504-522    24-42  (191)
380 2fv8_A H6, RHO-related GTP-bin  57.1     6.5 0.00027   15.7   3.2   20  503-522    27-46  (207)
381 2z4s_A Chromosomal replication  57.0     6.5 0.00028   15.7   3.3  113  503-628   132-253 (440)
382 2hup_A RAS-related protein RAB  56.9     6.6 0.00028   15.7   3.2   19  504-522    32-50  (201)
383 2fg5_A RAB-22B, RAS-related pr  56.8     6.6 0.00028   15.7   3.2   22  501-522    23-44  (192)
384 1kao_A RAP2A; GTP-binding prot  56.2     6.8 0.00028   15.6   3.1   19  504-522     6-24  (167)
385 2hjg_A GTP-binding protein ENG  56.0     6.8 0.00028   15.6   2.8   24  502-528   176-199 (436)
386 2atv_A RERG, RAS-like estrogen  55.9     6.8 0.00029   15.6   3.1   22  501-522    28-49  (196)
387 2afh_E Nitrogenase iron protei  55.9     6.8 0.00029   15.6   3.8   40  710-749   232-275 (289)
388 3bbp_A RAB-6, RAS-related prot  55.4       7 0.00029   15.5   3.0   32  491-522     3-37  (211)
389 2cjw_A GTP-binding protein GEM  54.9     7.1  0.0003   15.5   3.1   21  504-524     9-29  (192)
390 1z2a_A RAS-related protein RAB  54.8     7.1  0.0003   15.4   3.1   19  504-522     8-26  (168)
391 2q3h_A RAS homolog gene family  54.2     7.3 0.00031   15.4   2.9   20  502-521    21-40  (201)
392 3c5c_A RAS-like protein 12; GD  53.9     7.3 0.00031   15.4   3.6   23  501-523    21-43  (187)
393 2ph1_A Nucleotide-binding prot  53.7     7.4 0.00031   15.3   3.4   25  501-525    19-43  (262)
394 1mh1_A RAC1; GTP-binding, GTPa  53.4     7.5 0.00031   15.3   3.1   20  503-522     7-26  (186)
395 2rex_B RHO-related GTP-binding  52.3     7.8 0.00033   15.2   3.1   23  500-522     9-31  (197)
396 1a5t_A Delta prime, HOLB; zinc  52.1     7.8 0.00033   15.2   3.7   27  499-525    22-48  (334)
397 2gf0_A GTP-binding protein DI-  50.5     8.3 0.00035   15.0   4.0   21  502-522     9-29  (199)
398 2vf7_A UVRA2, excinuclease ABC  50.2     7.6 0.00032   15.3   2.3   18  502-519   524-541 (842)
399 2r6f_A Excinuclease ABC subuni  50.0     7.9 0.00033   15.1   2.3   19  501-519   650-668 (972)
400 1cr0_A DNA primase/helicase; R  49.8     8.5 0.00036   14.9   3.6   10  436-445   265-274 (296)
401 3oes_A GTPase rhebl1; small GT  49.5     8.6 0.00036   14.9   3.2   19  504-522    27-45  (201)
402 1puj_A YLQF, conserved hypothe  49.3     8.6 0.00036   14.9   4.1   25  498-522   117-141 (282)
403 2qy9_A Cell division protein F  48.3       9 0.00038   14.8   4.9   26  501-526    99-124 (309)
404 3clv_A RAB5 protein, putative;  48.1       9 0.00038   14.8   3.1   20  504-523    10-29  (208)
405 1cp2_A CP2, nitrogenase iron p  47.7     9.1 0.00038   14.7   3.8   21  506-526     6-26  (269)
406 3hws_A ATP-dependent CLP prote  46.0     9.7 0.00041   14.5   5.7   63  467-529     7-79  (363)
407 1c9k_A COBU, adenosylcobinamid  45.5     9.9 0.00042   14.5   2.5   19  503-521     1-19  (180)
408 2iwr_A Centaurin gamma 1; ANK   45.3     9.9 0.00042   14.5   2.7   21  501-521     7-27  (178)
409 1bif_A 6-phosphofructo-2-kinas  45.1      10 0.00042   14.5   3.6   11  516-526   394-404 (469)
410 3n70_A Transport activator; si  44.8      10 0.00042   14.4   4.7   46  475-524     2-47  (145)
411 2v1x_A ATP-dependent DNA helic  44.4      10 0.00043   14.4   3.6   11  485-495   392-402 (591)
412 2j0v_A RAC-like GTP-binding pr  43.6      11 0.00044   14.3   3.2   19  504-522    12-30  (212)
413 1byi_A Dethiobiotin synthase;   43.0      11 0.00045   14.2   3.9   22  504-525     4-26  (224)
414 2d59_A Hypothetical protein PH  40.7      12 0.00049   14.0   2.9   19   41-59     10-30  (144)
415 1tf7_A KAIC; homohexamer, hexa  40.4      12 0.00049   14.0   3.6   29  494-522   274-302 (525)
416 3ff4_A Uncharacterized protein  40.1      12  0.0005   14.0   2.3   16   11-26     25-40  (122)
417 2gno_A DNA polymerase III, gam  40.0      12  0.0005   13.9   5.3  130  479-634     2-140 (305)
418 3llm_A ATP-dependent RNA helic  39.8      12 0.00051   13.9   2.5   22  499-520    74-95  (235)
419 2i1q_A DNA repair and recombin  38.9      12 0.00052   13.8   3.6   24  495-518    92-115 (322)
420 1ls1_A Signal recognition part  38.8      12 0.00052   13.8   4.0   27  499-525    96-122 (295)
421 2wjy_A Regulator of nonsense t  37.5      13 0.00055   13.7   5.2   24  502-525   372-396 (800)
422 1oyw_A RECQ helicase, ATP-depe  37.0      13 0.00056   13.6   3.0   24    7-30     30-54  (523)
423 3l0i_B RAS-related protein RAB  36.9       6 0.00025   15.9   0.0   28  493-520    22-52  (199)
424 1g3q_A MIND ATPase, cell divis  36.5      14 0.00057   13.6   3.3   14   63-76     32-45  (237)
425 3cwq_A Para family chromosome   36.4      14 0.00057   13.6   3.7   24  503-526     3-26  (209)
426 3b9q_A Chloroplast SRP recepto  33.1      15 0.00064   13.2   6.8   26  501-526   100-125 (302)
427 3bs4_A Uncharacterized protein  32.8      15 0.00065   13.2   4.0   25  494-518    14-38  (260)
428 1pzn_A RAD51, DNA repair and r  32.7      15 0.00065   13.2   4.0   15  159-173    37-51  (349)
429 2og2_A Putative signal recogni  32.6      16 0.00065   13.2   6.8   25  501-525   157-181 (359)
430 2z43_A DNA repair and recombin  32.2      16 0.00066   13.1   3.7   29  493-521    99-127 (324)
431 3ea0_A ATPase, para family; al  31.7      16 0.00067   13.1   4.0   24  503-526     7-30  (245)
432 1v5w_A DMC1, meiotic recombina  31.6      16 0.00068   13.1   4.2   29  494-522   115-143 (343)
433 1q57_A DNA primase/helicase; d  31.1      16 0.00069   13.0   3.1   14   36-49     18-31  (503)
434 3co5_A Putative two-component   30.8      15 0.00064   13.2   1.3   43  476-523     6-49  (143)
435 1j8m_F SRP54, signal recogniti  30.1      17 0.00072   12.9   6.5   25  501-525    98-122 (297)
436 2ax3_A Hypothetical protein TM  29.4      16 0.00068   13.1   1.2   12   52-63     53-64  (502)
437 1wcv_1 SOJ, segregation protei  29.0      18 0.00075   12.8   2.4   26  501-526     7-32  (257)
438 2o8n_A APOA-I binding protein;  28.6      18 0.00076   12.8   1.4   17  501-517    80-96  (265)
439 3h20_A Replication protein B;   28.6      18 0.00076   12.7   8.9  103    6-111     7-114 (323)
440 2bjv_A PSP operon transcriptio  28.5      18 0.00076   12.7   5.4  197  471-687     3-221 (265)
441 1y81_A Conserved hypothetical   28.1      18 0.00078   12.7   2.9   13  165-177    77-89  (138)
442 3lda_A DNA repair protein RAD5  27.9      19 0.00078   12.7   3.4   24  496-519   173-196 (400)
443 1zu4_A FTSY; GTPase, signal re  27.3      19  0.0008   12.6   6.6   27  500-526   104-130 (320)
444 1r5b_A Eukaryotic peptide chai  26.2      20 0.00084   12.5   3.6   29  498-526    40-68  (467)
445 1vma_A Cell division protein F  26.1      20 0.00084   12.5   6.9   59  467-525    63-128 (306)
446 1jzt_A Hypothetical 27.5 kDa p  25.8      16 0.00069   13.0   0.7   15  499-513    57-71  (246)
447 3e70_C DPA, signal recognition  25.3      21 0.00087   12.4   6.8   48  478-525    95-153 (328)
448 3fkq_A NTRC-like two-domain pr  24.4      21  0.0009   12.3   3.9   30  496-525   139-168 (373)
449 2q6t_A DNAB replication FORK h  23.3      23 0.00095   12.1   3.8   30  494-523   193-222 (444)
450 3mca_A HBS1, elongation factor  23.2      23 0.00095   12.1   4.0   30  497-526   173-202 (592)
451 3b85_A Phosphate starvation-in  23.1      23 0.00095   12.1   3.7   33  487-524    12-44  (208)
452 3fgn_A Dethiobiotin synthetase  23.1      23 0.00096   12.1   3.9   24  502-525    27-51  (251)
453 2ffh_A Protein (FFH); SRP54, s  22.9      23 0.00096   12.1   6.7   46  480-525    72-122 (425)
454 2c78_A Elongation factor TU-A;  22.5      23 0.00098   12.0   3.7   30  497-526     7-36  (405)
455 1hyq_A MIND, cell division inh  22.5      23 0.00098   12.0   3.4   28  501-528     3-30  (263)
456 3end_A Light-independent proto  22.3      24 0.00099   12.0   3.5   24  501-525    42-65  (307)
457 1ojl_A Transcriptional regulat  20.5      26  0.0011   11.7   3.2   21  504-524    28-48  (304)
458 2p65_A Hypothetical protein PF  20.4      26  0.0011   11.7   3.5   47  473-525    21-67  (187)
459 1rj9_A FTSY, signal recognitio  20.4      26  0.0011   11.7   3.6   28  498-525    99-126 (304)
460 2v3c_C SRP54, signal recogniti  20.3      26  0.0011   11.7   5.8   46  480-525    71-123 (432)

No 1  
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.94  E-value=6.1e-29  Score=208.49  Aligned_cols=216  Identities=9%  Similarity=0.026  Sum_probs=166.4

Q ss_pred             ECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf             07937974388855898655010013788887579478999998887999999999999999975987433799997078
Q gi|254781225|r  431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG  510 (789)
Q Consensus       431 ~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G  510 (789)
                      ++|++.+.+...++.+.+.+|++...+....   ..+.+.+||.- .+- + ..++..++...|.+.+..+.+++++|+|
T Consensus        40 vk~~~~~~~~~~~~~~~~~~~i~~~~~~~d~---~~~~i~~~l~~-q~~-~-~~~~~~~l~~~l~~~~~k~n~~~l~Gp~  113 (267)
T 1u0j_A           40 IKAALDNAGKIMSLTKTAPDYLVGQQPVEDI---SSNRIYKILEL-NGY-D-PQYAASVFLGWATKKFGKRNTIWLFGPA  113 (267)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHSCSSCCSCG---GGCHHHHHHHH-TTC-C-HHHHHHHHHHHHTTCSTTCCEEEEECST
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC---CHHHHHHHHHH-CCC-C-HHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf             9999999999998746999995535866777---61799999987-598-8-8999999999973799762699998899


Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf             86257899999997233000344267642012455556898899738980999934677760131002454159858732
Q gi|254781225|r  511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR  590 (789)
Q Consensus       511 ~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar  590 (789)
                      +||||+|+++|..++|.+++...             .+.++.++.|.|+|+++.+|+..... ..+.+|+|+|||+|.++
T Consensus       114 ~tGKS~f~~~i~~~~g~~~~~~~-------------~~s~F~l~~l~~~~~~~~~e~~~~~~-~~~~~K~l~gGd~v~vd  179 (267)
T 1u0j_A          114 TTGKTNIAEAIAHTVPFYGCVNW-------------TNENFPFNDCVDKMVIWWEEGKMTAK-VVESAKAILGGSKVRVD  179 (267)
T ss_dssp             TSSHHHHHHHHHHHSSCEEECCT-------------TCSSCTTGGGSSCSEEEECSCCEETT-THHHHHHHHTTCCEEC-
T ss_pred             CCCHHHHHHHHHHHHCCCEEECC-------------CCCCCCCCCCCCCEEEEEECCCCCHH-HHHHHHHHCCCCCEEEE
T ss_conf             88789999999998273145247-------------78887666667987999958986222-89999987489936875


Q ss_pred             ECCCCCCEEEECCEEEEEECCCCCCCCCC-------CCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             10478606871452899973886342679-------84166468999658878887878334220120447999999999
Q gi|254781225|r  591 LNYGNTYSESPASFTPFIVPNKHLFVRNP-------DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV  663 (789)
Q Consensus       591 ~~~~~~~~~~~p~~~~~~~~N~~P~~~~~-------d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i~~w~l~g~  663 (789)
                      .||++++ +++|+.++++++|++|.+.+.       +.|++||+++++|+++||....    .+...|..++++|+.+++
T Consensus       180 ~K~k~~~-~~~~~p~li~snndi~~~~~~~~~s~~~~~~l~~R~~~~~F~~~~p~~~~----~i~~~e~~~f~~W~~~~~  254 (267)
T 1u0j_A          180 QKCKSSA-QIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFG----KVTKQEVKDFFRWAKDHV  254 (267)
T ss_dssp             -----CC-EECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSC----CCCHHHHHHHHHHHHHTC
T ss_pred             ECCCCCE-EEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHEEEEECCCCCCCCCC----CCCHHHHHHHHHHHHHCC
T ss_conf             1468873-84176089994897765568775531020454650799878982797668----768899999999998366


Q ss_pred             HHHHHCCC
Q ss_conf             99998788
Q gi|254781225|r  664 KAYISKGL  671 (789)
Q Consensus       664 ~~~~~~g~  671 (789)
                      .++.++..
T Consensus       255 ~~~~~~~~  262 (267)
T 1u0j_A          255 VEVEHEFY  262 (267)
T ss_dssp             CCCCCCSB
T ss_pred             HHHHHHHC
T ss_conf             14467640


No 2  
>3m1m_A ORF904; primase, polymerase, plasmid, replication; 1.85A {Sulfolobus islandicus}
Probab=99.90  E-value=4.1e-24  Score=176.44  Aligned_cols=186  Identities=21%  Similarity=0.286  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCC--CCCCCCCCCCCHHHHHHH----H-HCCEEEEECCCCCCEEEEEEECCCC
Q ss_conf             67888878999977985977356778787--756545656898999742----0-0788999234779879999646881
Q gi|254781225|r    3 VMQWKEQAKQAIHNGFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKL----P-ACGFGFVCGVGEQPLYAFDIDSKDE   75 (789)
Q Consensus         3 ~~~~~~~~~~~i~~G~~viPi~pg~KrP~--~~~~w~~~~~~~~~i~~~----~-~~giGi~~G~~s~glv~iDiD~~d~   75 (789)
                      .+||   |.+|++.||+|||+.|++|+|+  .|.+|++.+++.++|++|    | ++||||+||.  +|+||||||..++
T Consensus         8 ~L~~---Al~Yae~G~sVfPL~Pg~K~P~ik~Wk~yq~~~pt~eEI~~Ww~~~P~a~NIGI~TG~--sGLVVLDiD~keg   82 (335)
T 3m1m_A            8 RIRY---AKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ--KGLVILDFESKEK   82 (335)
T ss_dssp             HHHH---HHHHHHTTCCCEEECTTTSSBSSTTGGGGGTSCCCHHHHHHHHHHHHTTCEEEEESSG--GGEEEEEESCHHH
T ss_pred             HHHH---HHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC--CCEEEEECCCCCC
T ss_conf             9999---9999987996886689998887778632046897999999999749875548997288--8889998978642


Q ss_pred             HHHHHHHHHHHHC-CCCCEEEECCCCCEEEEEEECCCCCCCC--CCCCCCCCCEEEECCCCEEEECCCC-----------
Q ss_conf             2567899987641-8997699678896599995073102445--4444576753485268438804776-----------
Q gi|254781225|r   76 KTANTFKDTFEIL-HGTPIVRIGQKPKILIPFRMNKEGIKKK--KTTESTQGHLDILGCGQYFVAYNIH-----------  141 (789)
Q Consensus        76 ~~~~~~~~~~~~l-~g~p~~~~g~~~~~~~~yr~~~~~~~~~--~~~~~~~~~iEi~~~G~q~V~~gsh-----------  141 (789)
                      .........+..+ ..+..++++ .|+.|++|+.+..+..+.  .+....++.+||++.|+|||+|||.           
T Consensus        83 ~~~~~~~~~L~~li~~T~~VkTP-SGG~HLYfr~~e~Pp~k~~p~~~~~G~gviDirs~ggYVVaPGS~inh~~~~~~k~  161 (335)
T 3m1m_A           83 LKAWIGESALEELCRKTLCTNTV-HGGIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKC  161 (335)
T ss_dssp             HHHHHCHHHHHHHHHHSCEEECT-TSCEEEEEECSSCCSSCEEEEEEETTEEEEEEECTTCEEECTTCEEEGGGCCSTTC
T ss_pred             HHHHHHHHHHHHCCCCCEEEECC-CCCEEEEEECCCCCHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCC
T ss_conf             24554345666317787699899-99189999789988232265422478742778548978988820204556666678


Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88887457517765587221646899999999976200124345432345543222345
Q gi|254781225|r  142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN  200 (789)
Q Consensus       142 p~Tg~~Y~w~~~~~~~~~~~~P~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (789)
                      |..|+.|+.|+.+.. +   +-.|.+..+..+++++.+..+..++..+..  ++.|...
T Consensus       162 ~~~g~~~~~~~~~~~-~---~~~i~~~~l~~~l~~l~e~~k~~~i~~~~~--~~~~~~~  214 (335)
T 3m1m_A          162 PWKEQNYTTCYTLYN-E---LKEISKVDLKSLLRFLAEKGKRLGITLSKT--AKEWLEG  214 (335)
T ss_dssp             TTTTSSCEEECEESS-C---CCCCCBCCHHHHHHHHHHHHGGGTEEECHH--HHHHHCC
T ss_pred             CCCCCCCCEEECCCC-C---CCCCCCCCHHHHHHHHHHHHHHCCCCCCCH--HHHHHCC
T ss_conf             856877720201245-5---551566587889999998745416331600--5666357


No 3  
>1ro2_A Hypothetical protein ORF904; DNA polymerase, primase, replication, polymerization, evolution of nucleic acid polymerizing enzymes; 1.60A {Sulfolobus islandicus} SCOP: d.264.1.2 PDB: 1ro0_A 1rni_A
Probab=99.89  E-value=2e-23  Score=171.90  Aligned_cols=179  Identities=18%  Similarity=0.231  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCC--CCCCCCCCCCCHHHHHHH----H-HCCEEEEECCCCCCEEEEEEECCCC
Q ss_conf             67888878999977985977356778787--756545656898999742----0-0788999234779879999646881
Q gi|254781225|r    3 VMQWKEQAKQAIHNGFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKL----P-ACGFGFVCGVGEQPLYAFDIDSKDE   75 (789)
Q Consensus         3 ~~~~~~~~~~~i~~G~~viPi~pg~KrP~--~~~~w~~~~~~~~~i~~~----~-~~giGi~~G~~s~glv~iDiD~~d~   75 (789)
                      .++|   |.+|+++||+|||+.|++|+|.  .|.+|+++.++.++|.+|    | ++||||.||.  +++|+||||.+++
T Consensus         4 ~l~~---A~~y~~~G~~V~Pl~p~~K~P~~~~W~~~~~~~~t~~ei~~w~~~~p~~~NiGI~tG~--sglvViDiD~~~~   78 (216)
T 1ro2_A            4 RIRY---AKWMLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ--KGMVIMDFESKEK   78 (216)
T ss_dssp             HHHH---HHHHHHTTCCCEEECTTTCSBSSTTGGGGGTSCCCHHHHHHHHHHHHHTCEEEEESSG--GGEEEEEESCHHH
T ss_pred             HHHH---HHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC--CCEEEEECCCCCH
T ss_conf             9999---9999988997996689998578678743146899999999999859975559998178--8889997888520


Q ss_pred             HHHHH-HHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCCCC--CCCCCCCCEEEECCCCEEEECCCC------CCCCC
Q ss_conf             25678-9998764189976996788965999950731024454--444576753485268438804776------88887
Q gi|254781225|r   76 KTANT-FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK--TTESTQGHLDILGCGQYFVAYNIH------PKTKK  146 (789)
Q Consensus        76 ~~~~~-~~~~~~~l~g~p~~~~g~~~~~~~~yr~~~~~~~~~~--~~~~~~~~iEi~~~G~q~V~~gsh------p~Tg~  146 (789)
                      ..... +....+.+..+..+++++. +.|++|+.+..+..+..  ......+.+||++.|+|||+|||.      +.++.
T Consensus        79 ~~~~~~~~~l~~~~~~T~~v~TpsG-G~HlYf~~~~~p~~~~~~~~~~~g~~~iDir~~ggYVVaPgS~i~h~~~~~~~~  157 (216)
T 1ro2_A           79 LKAWIGESALEELCRKTLCTNTVHG-GIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKC  157 (216)
T ss_dssp             HHHHHCHHHHHHHHHHSCEEECTTS-CEEEEEECSCCCSSCCCCSEESSSSEEEEEECTTCEEECTTCEEEGGGCCSTTC
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCC-EEEEEEECCCCCCCCCCCCEECCCCCEEEEEECCCEEEECCEECCCCCCCCCCC
T ss_conf             6666555666620888669988998-589999778878554365332389844899716988995581035666787777


Q ss_pred             CEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             457517765-58722164689999999997620012434543
Q gi|254781225|r  147 EYTWTTPPH-RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD  187 (789)
Q Consensus       147 ~Y~w~~~~~-~~~~~~~P~i~~~~~~~l~~~~~~~~~~~~~~  187 (789)
                      +|+|..... .....+++.+.+..++.++.++..+.+..+..
T Consensus       158 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~  199 (216)
T 1ro2_A          158 PWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGIT  199 (216)
T ss_dssp             TTTTCSCEEECEESSSCCCCEECCHHHHHHHHHHHHGGGTCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             745787302566654334456104678899998766653763


No 4  
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.69  E-value=3.5e-17  Score=130.35  Aligned_cols=159  Identities=12%  Similarity=0.117  Sum_probs=121.7

Q ss_pred             CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             87579478999998887999999999999999975987433799997078862578999999972330003442676420
Q gi|254781225|r  461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ  540 (789)
Q Consensus       461 ~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~  540 (789)
                      +.+.....+.+||.-  ..-+.+.|+ ..+...|.|..+ +.+++++|++++|||+|...|.+.++....+..       
T Consensus        22 ~~~g~w~~i~~~l~~--q~v~~~~fl-~~l~~~l~g~PK-knci~~~GPp~TGKS~fa~sL~~~l~G~vis~~-------   90 (212)
T 1tue_A           22 DEGGDWRPIVQFLRY--QQIEFITFL-GALKSFLKGTPK-KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFV-------   90 (212)
T ss_dssp             CSCCCSHHHHHHHHH--TTCCHHHHH-HHHHHHHHTCTT-CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCC-------
T ss_pred             CCCCCHHHHHHHHHH--CCCCHHHHH-HHHHHHHCCCCC-CEEEEEECCCCCCHHHHHHHHHHHHCCEEEECC-------
T ss_conf             788878999999987--785399999-999999708986-228999889986689999999998568046315-------


Q ss_pred             CCCCCCCCCCHHHHHHCCCEEEEEECCCCC--CCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCC
Q ss_conf             124555568988997389809999346777--601310024541598587321047860687145289997388634267
Q gi|254781225|r  541 NRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN  618 (789)
Q Consensus       541 ~~~~~~~~~~~~la~l~g~r~~~~~E~~~~--~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~  618 (789)
                          + ...+|.|+.|.++++++.+|+...  ..+ ...+|.++||++|.++.||+++. ++.+. .++++||+.|...+
T Consensus        91 ----N-~~S~F~Lq~l~~~ki~l~dD~t~~~~~~~-d~~lK~ll~G~~V~vd~Khk~~~-qi~~p-PliITsN~d~~~~d  162 (212)
T 1tue_A           91 ----N-STSHFWLEPLTDTKVAMLDDATTTCWTYF-DTYMRNALDGNPISIDRKHKPLI-QLKCP-PILLTTNIHPAKDN  162 (212)
T ss_dssp             ----C-SSSCGGGGGGTTCSSEEEEEECHHHHHHH-HHHCHHHHHTCCEEEC----CCE-EECCC-CEEEEESSCTTSSS
T ss_pred             ----C-CCCCCCCCCCCCCEEEEEECCCCCHHHHH-HHHHHHCCCCCEEEECCCCCCCE-EECCC-CEEEEECCCCCCCC
T ss_conf             ----7-78886677667987999846664246778-99999703998166500259960-30279-88998188989675


Q ss_pred             CCCCEEEEEEEEECCCCCCC
Q ss_conf             98416646899965887888
Q gi|254781225|r  619 PDDAWWRRYIVIPFDKPIAN  638 (789)
Q Consensus       619 ~d~~~~rR~~iipF~~~~~~  638 (789)
                      .+.+++||+++++|+++||-
T Consensus       163 ~~~~L~sRi~~f~F~~~fP~  182 (212)
T 1tue_A          163 RWPYLESRITVFEFPNAFPF  182 (212)
T ss_dssp             SCHHHHTSCEEEECCSCCCB
T ss_pred             CCHHHHHEEEEEECCCCCCC
T ss_conf             52426650799887994887


No 5  
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.59  E-value=2.3e-15  Score=118.32  Aligned_cols=176  Identities=14%  Similarity=0.170  Sum_probs=122.8

Q ss_pred             CCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             98655010013788887579478999998887999999999999999975987433799997078862578999999972
Q gi|254781225|r  446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       446 ~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      -+...+|...+..-.++ -....+.+||.-  ..-+.+.++ .++-..|-|. ..+.+++++|++++|||+|...|...+
T Consensus        76 ms~s~~i~~r~~~~~~~-g~w~~Iv~fL~~--q~v~~i~fl-~~l~~~l~~~-PKknci~~~GPpnTGKS~fa~sL~~~l  150 (305)
T 2v9p_A           76 LSMPAYIKARCKLATGE-GSWKSILTFFNY--QNIELITFI-NALKLWLKGI-PKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             SCHHHHHHHHHHHCCSS-CCTHHHHHHHHH--TTCCHHHHH-HHHHHHHHTC-TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCC-CCHHHHHHHHHH--CCCCHHHHH-HHHHHHHCCC-CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             59999999997505788-765999999983--796599999-9999997289-874179998999878899999999980


Q ss_pred             CCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCC--CCCCCCEEEEEECCCEEEEEECCCCCCEEEECC
Q ss_conf             330003442676420124555568988997389809999346777--601310024541598587321047860687145
Q gi|254781225|r  526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPAS  603 (789)
Q Consensus       526 G~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~--~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~  603 (789)
                      |. .+.+.    ..       .+.+|+|..|.++++++..|+...  ..+ ...+|.++||++|.++.||+++. ++++.
T Consensus       151 ~G-~vis~----~N-------~ks~F~L~~l~dkkv~l~dD~t~~~~~~~-d~~lK~~lgG~~V~id~Khk~~~-qi~~p  216 (305)
T 2v9p_A          151 GG-SVLSF----AN-------HKSHFWLASLADTRAALVDDATHACWRYF-DTYLRNALDGYPVSIDRKHKAAV-QIKAP  216 (305)
T ss_dssp             TC-EEECG----GG-------TTSGGGGGGGTTCSCEEEEEECHHHHHHH-HHTTTGGGGTCCEECCCSSCCCC-EECCC
T ss_pred             CC-CEEEE----CC-------CCCCCCCCCHHCCEEEEEECCCHHHHHHH-HHHHHHHCCCCEEEEECCCCCCC-CCCCC
T ss_conf             98-36850----68-------99976577321587999815660556778-99999713997477630047863-14689


Q ss_pred             EEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf             28999738863426798416646899965887888787
Q gi|254781225|r  604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA  641 (789)
Q Consensus       604 ~~~~~~~N~~P~~~~~d~~~~rR~~iipF~~~~~~~d~  641 (789)
                       -++++||+.|...+...++++|+++++|+++||+.+.
T Consensus       217 -PlIITSN~di~~~d~~~yL~sR~~~f~F~~~~Pd~~g  253 (305)
T 2v9p_A          217 -PLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESG  253 (305)
T ss_dssp             -CEEEEESSCSTTCGGGGGGTTTEEEEECCCCCCCC--
T ss_pred             -CEEEECCCCCCCCCCCHHHHHEEEEEECCCCCCCCCC
T ss_conf             -8899648998857551446642799777998988899


No 6  
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=98.42  E-value=8.3e-07  Score=61.50  Aligned_cols=75  Identities=16%  Similarity=0.268  Sum_probs=65.4

Q ss_pred             HHHHHHHEEECCCCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEECC
Q ss_conf             88875432626884111799999999999850466755545256899998635423331001025676520899798656
Q gi|254781225|r  694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP  773 (789)
Q Consensus       694 ~~fi~e~ce~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~~~~~~~r~~~Gi~Lk~  773 (789)
                      -+||.+.||.+++..++..+||+.|.+||+.++   .++++...|++.++.. | ++++..+...++.++..|.||+||.
T Consensus         2 ~~WL~~~~e~~~~~svpr~~lY~~Y~~~C~~~~---~~~l~~a~Fgk~ir~v-F-P~v~~rRlg~rG~skyhY~Gi~lka   76 (76)
T 1dp7_P            2 VQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQK---LEPVNAASFGKLIRSV-F-MGLRTRRLGTRGNSKYHYYGLRIKA   76 (76)
T ss_dssp             HHHHHHHEEEEEEEEEEHHHHHHHHHHHHHHTT---CCCCCHHHHHHHHHHH-S-TTCEEEEESSTTCCEEEEEEEEECC
T ss_pred             HHHHHHHCEECCCCEEEHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHH-C-CCCCEEECCCCCCCEEEEEEEEECC
T ss_conf             557775548789965607999999999999859---9667777899999998-8-9973000698997548996069639


No 7  
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.43  E-value=0.0026  Score=38.31  Aligned_cols=146  Identities=14%  Similarity=0.076  Sum_probs=76.8

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf             99999888799999999999999997598743379999707886257899999997233000344267642012455556
Q gi|254781225|r  469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK  548 (789)
Q Consensus       469 ~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~  548 (789)
                      ...||...+++-+.+.  .+++-+.+.|. ..+..++++||.|.|||+|...|.+.+|.... +.+.+..         .
T Consensus       140 ~v~~l~~~~~~~~~~~--~~~l~~~~~~~-~~~~~iL~~GPPGtGKT~lA~alA~~l~~~~i-~in~s~~---------~  206 (377)
T 1svm_A          140 GVAWLHCLLPKMDSVV--YDFLKCMVYNI-PKKRYWLFKGPIDSGKTTLAAALLELCGGKAL-NVNLPLD---------R  206 (377)
T ss_dssp             HHHHHTTTSTTHHHHH--HHHHHHHHHCC-TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEE-CCSSCTT---------T
T ss_pred             HHHHHHHCCCCCCHHH--HHHHHHHHHCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE-EEECHHH---------H
T ss_conf             9999985156724899--99999998489-86445999899999889999999998599889-9977003---------1


Q ss_pred             CCHHHHHHCCCEEEEEECCCCC----------CCCCC--CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCC
Q ss_conf             8988997389809999346777----------60131--00245415985873210478606871452899973886342
Q gi|254781225|r  549 ANPSLIRLMGSRIVIISETNEN----------DEINA--AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV  616 (789)
Q Consensus       549 ~~~~la~l~g~r~~~~~E~~~~----------~~~~~--~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~  616 (789)
                      ..+.+..+.++...++.+....          -.+++  .....+-|+.......++.... ..... -++++||+.-  
T Consensus       207 s~f~l~~~~~~~~~~~dd~~~~~~~~~~~~~~i~iDEiD~l~~~~dg~~~~~ld~k~~~~~-~~~~~-piI~TtN~~~--  282 (377)
T 1svm_A          207 LNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKR-TQIFP-PGIVTMNEYS--  282 (377)
T ss_dssp             HHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCE-EECCC-CEEEEECSCC--
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCCCCCCCHHCCCCHH-HCCCC-CEEEECCCCC--
T ss_conf             0888751420212036888876664157898067640864200014860001001123501-11566-6378517444--


Q ss_pred             CCCCCCEEEEEEEEEC
Q ss_conf             6798416646899965
Q gi|254781225|r  617 RNPDDAWWRRYIVIPF  632 (789)
Q Consensus       617 ~~~d~~~~rR~~iipF  632 (789)
                       +..-...||..++-|
T Consensus       283 -~~~~~~~R~~~~~i~  297 (377)
T 1svm_A          283 -VPKTLQARFVKQIDF  297 (377)
T ss_dssp             -CCHHHHTTEEEEEEC
T ss_pred             -CCCCCCCCCEEEEEC
T ss_conf             -642014775122205


No 8  
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, membrane, nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.03  E-value=0.00045  Score=43.34  Aligned_cols=153  Identities=14%  Similarity=0.071  Sum_probs=77.5

Q ss_pred             HHCCCHHHHHHHHHHHHHHHC------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC--
Q ss_conf             887999999999999999975------987433799997078862578999999972330003442676420124555--
Q gi|254781225|r  475 GYFESEEVMDYFTRCVGMALL------GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA--  546 (789)
Q Consensus       475 ~~~~d~e~~~~l~~~~g~~l~------g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~--  546 (789)
                      +|.|-++..+.+++.+-+-+.      +.....+-++|+|+.|+|||++.+.+..-+|-.........+++...+...  
T Consensus        19 dI~G~~~~k~~l~e~i~~pl~~~~~~~~~~~~~~giLL~GPpGtGKT~la~aiA~e~~~~~~~i~~~~l~~~~~g~~e~~   98 (322)
T 3eie_A           19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKL   98 (322)
T ss_dssp             GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHCCCCHHHHH
T ss_conf             96399999999999999887598978369999971688797998789999999998589856756899876246299999


Q ss_pred             CCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEE--CCCCCCEEEECCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             568988997389809999346777601310024541598587321--047860687145289997388634267984166
Q gi|254781225|r  547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL--NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW  624 (789)
Q Consensus       547 ~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~--~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~  624 (789)
                      -..-+..|+...-.++++.|.+.--.   .+-....+.+......  ..............++.+||++   ..-|.++.
T Consensus        99 i~~~f~~a~~~~p~ii~iDeid~l~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivI~aTN~~---~~ld~al~  172 (322)
T 3eie_A           99 VKQLFAMARENKPSIIFIDQVDALTG---TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP---WQLDSAIR  172 (322)
T ss_dssp             HHHHHHHHHHTSSEEEEEECGGGGSC---C------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG---GGSCHHHH
T ss_pred             HHHHHHHHHHCCCCEEEECHHHHHCC---CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH---HHCCHHHH
T ss_conf             99999999864996674120344305---5778888327999999999975113567874899727980---33589998


Q ss_pred             EEEE-EEECC
Q ss_conf             4689-99658
Q gi|254781225|r  625 RRYI-VIPFD  633 (789)
Q Consensus       625 rR~~-iipF~  633 (789)
                      ||+- .|.|.
T Consensus       173 rRfd~~i~i~  182 (322)
T 3eie_A          173 RRFERRIYIP  182 (322)
T ss_dssp             HHCCEEEECC
T ss_pred             HHHHEEEEEC
T ss_conf             2503688608


No 9  
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.90  E-value=0.00085  Score=41.51  Aligned_cols=154  Identities=15%  Similarity=0.214  Sum_probs=81.7

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCH
Q ss_conf             99888799999999999999997598743379999707886257899999997233000344267642012455556898
Q gi|254781225|r  472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP  551 (789)
Q Consensus       472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~  551 (789)
                      .|+++.|.+.++.-+..++-.........+ .++|+|+.|.||+|+..+|.+.++........ .....     .+....
T Consensus        23 ~l~dvvGQ~~~~~~l~~~i~~~~~~~~~~~-~lLf~GPPGtGKTTlA~iiA~~~~~~~~~~s~-~~~~~-----~~d~~~   95 (334)
T 1in4_A           23 SLDEFIGQENVKKKLSLALEAAKMRGEVLD-HVLLAGPPGLGKTTLAHIIASELQTNIHVTSG-PVLVK-----QGDMAA   95 (334)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHHTCCCC-CEEEESSTTSSHHHHHHHHHHHHTCCEEEEET-TTCCS-----HHHHHH
T ss_pred             CHHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCC-----HHHHHH
T ss_conf             788834959999999999998884388888-17988969988999999999831887445678-53212-----678999


Q ss_pred             HHHHHCCCEEEEEECCCCCCCCCC-CEEEEEECC--CEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE-
Q ss_conf             899738980999934677760131-002454159--8587321047860687145289997388634267984166468-
Q gi|254781225|r  552 SLIRLMGSRIVIISETNENDEINA-AKIKQMTGG--DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-  627 (789)
Q Consensus       552 ~la~l~g~r~~~~~E~~~~~~~~~-~~~K~ltgg--D~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~-  627 (789)
                      .+.......+++++|...-.+... ..+..+-.+  |.+.+..-..+.+....+.+.++.+||..+.+.   .++..|+ 
T Consensus        96 ~~~~~~~~~ilfIDEihr~~k~~qd~ll~~~E~~~i~~l~g~~~~~~~~~~~~~~~~~i~att~~~~~~---~~l~sR~~  172 (334)
T 1in4_A           96 ILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLS---SPLRSRFG  172 (334)
T ss_dssp             HHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSC---HHHHTTCS
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHCEEEEEEECCCCCCCCEECCCCCEEEEEECCCCCCCC---HHHHHHHE
T ss_conf             988640253023445865436688751010002069988526744554004777557997426754363---77776600


Q ss_pred             EEEECCCC
Q ss_conf             99965887
Q gi|254781225|r  628 IVIPFDKP  635 (789)
Q Consensus       628 ~iipF~~~  635 (789)
                      .++.|+..
T Consensus       173 ~~~~~~~~  180 (334)
T 1in4_A          173 IILELDFY  180 (334)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
T ss_conf             26521678


No 10 
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.80  E-value=0.00039  Score=43.74  Aligned_cols=155  Identities=13%  Similarity=0.099  Sum_probs=78.6

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHCC------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC-
Q ss_conf             88879999999999999999759------87433799997078862578999999972330003442676420124555-
Q gi|254781225|r  474 SGYFESEEVMDYFTRCVGMALLG------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA-  546 (789)
Q Consensus       474 ~~~~~d~e~~~~l~~~~g~~l~g------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~-  546 (789)
                      +++.|-++..+-+.+.+-+.+..      .....+-++++|+.|+|||++.+.+..-+|-.........+.+...+... 
T Consensus        21 ~di~G~~~~k~~l~e~v~~~~~~~~~~~~~~~p~~giLL~GPpGtGKT~la~aiA~~~~~~~~~~~~~~l~~~~~g~~~~  100 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEK  100 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCHHHH
T ss_conf             88638999999999999957509998934999982488889699749999999985229983225520120356777999


Q ss_pred             -CCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCC-EEEEEEC--C-CCCCEEEECCEEEEEECCCCCCCCCCCC
Q ss_conf             -568988997389809999346777601310024541598-5873210--4-7860687145289997388634267984
Q gi|254781225|r  547 -GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLN--Y-GNTYSESPASFTPFIVPNKHLFVRNPDD  621 (789)
Q Consensus       547 -~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD-~i~ar~~--~-~~~~~~~~p~~~~~~~~N~~P~~~~~d~  621 (789)
                       -..-++.|+.....++++.|.+.-..-..   ..-..++ .+.....  . ......-.....++.+||++-   .-|.
T Consensus       101 ~~~~~~~~a~~~~p~il~iDeid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viviatTn~~~---~ld~  174 (297)
T 3b9p_A          101 LVRALFAVARHMQPSIIFIDEVDSLLSERS---SSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ---ELDE  174 (297)
T ss_dssp             HHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG---GBCH
T ss_pred             HHHHHHHHHHHCCCCEEEHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCH---HCCH
T ss_conf             999999999973997321677777633467---8886154999999999876323577898089998379930---0278


Q ss_pred             CEEEEE-EEEECCC
Q ss_conf             166468-9996588
Q gi|254781225|r  622 AWWRRY-IVIPFDK  634 (789)
Q Consensus       622 ~~~rR~-~iipF~~  634 (789)
                      |+.||+ ..|.|+.
T Consensus       175 al~rRfd~~i~~~~  188 (297)
T 3b9p_A          175 AALRRFTKRVYVSL  188 (297)
T ss_dssp             HHHHHCCEEEECCC
T ss_pred             HHHCCCCEEEEECC
T ss_conf             88674408987289


No 11 
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.69  E-value=0.0033  Score=37.57  Aligned_cols=154  Identities=18%  Similarity=0.182  Sum_probs=82.5

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCH
Q ss_conf             99888799999999999999997598743379999707886257899999997233000344267642012455556898
Q gi|254781225|r  472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP  551 (789)
Q Consensus       472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~  551 (789)
                      -|+++.|.+.++.-+..++-....+....+ .++|+||.|.||+|+..+|.+.++........ .....     ......
T Consensus        27 ~l~dvVGQ~~~~~~l~~~i~~~~~~~~~~~-s~lf~GPPG~GKTTlA~iiA~~~~~~~~~~~a-~~~~~-----~~d~~~   99 (338)
T 3pfi_A           27 NFDGYIGQESIKKNLNVFIAAAKKRNECLD-HILFSGPAGLGKTTLANIISYEMSANIKTTAA-PMIEK-----SGDLAA   99 (338)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHHHHHTTSCCC-CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG-GGCCS-----HHHHHH
T ss_pred             CHHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCCC-----HHHHHH
T ss_conf             889956929999978999999985388888-48988989987999999999841898555556-43331-----899999


Q ss_pred             HHHHHCCCEEEEEECCCCCCCCCCCE-EEEEECCC--EEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf             89973898099993467776013100-24541598--5873210478606871452899973886342679841664689
Q gi|254781225|r  552 SLIRLMGSRIVIISETNENDEINAAK-IKQMTGGD--CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI  628 (789)
Q Consensus       552 ~la~l~g~r~~~~~E~~~~~~~~~~~-~K~ltggD--~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~  628 (789)
                      .+.........+++|...-....... +..+-.+.  .+.+..-....+....+.+.++++||+...+.   .++..|+.
T Consensus       100 ~~~~~~~~~ilfiDeih~~~~~~q~~ll~~ie~~~i~~i~~~~~~~~~~~~~~~~~~~i~a~~~~~~l~---~~l~sR~~  176 (338)
T 3pfi_A          100 ILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLS---NPLRDRFG  176 (338)
T ss_dssp             HHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSC---HHHHTTCS
T ss_pred             HHHCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEHHHHHHHHCCCCCCCCCEEEEEECCCHHHCC---HHHHHHHH
T ss_conf             865134203676532320254320010034324367541010121023356875324443035365324---14431256


Q ss_pred             -EEECCCC
Q ss_conf             -9965887
Q gi|254781225|r  629 -VIPFDKP  635 (789)
Q Consensus       629 -iipF~~~  635 (789)
                       ++.|...
T Consensus       177 ~~~~~~~~  184 (338)
T 3pfi_A          177 MQFRLEFY  184 (338)
T ss_dssp             EEEECCCC
T ss_pred             HHHHHHCC
T ss_conf             76654014


No 12 
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.58  E-value=0.0052  Score=36.28  Aligned_cols=138  Identities=16%  Similarity=0.235  Sum_probs=75.1

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH-------HHHHHCCCC-
Q ss_conf             988879999999999999999759874337999970788625789999999723300034426-------764201245-
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA-------SDIMQNRPP-  544 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~-------~~~~~~~~~-  544 (789)
                      |+++.+.+++++.|+.++..   +  +....++++|+-|.||+++..++...++.........       ..+...... 
T Consensus        22 l~diig~~~~~~~L~~~i~~---~--~~~~~~L~~Gp~G~GKt~~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~d   96 (250)
T 1njg_A           22 FADVVGQEHVLTALANGLSL---G--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD   96 (250)
T ss_dssp             GGGCCSCHHHHHHHHHHHHH---T--CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSS
T ss_pred             HHHHCCHHHHHHHHHHHHHC---C--CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCE
T ss_conf             99814939999999999986---9--976059878999987899999999984785567767666546899997489862


Q ss_pred             -----CCCCCC-H---HHHH------H-CCCEEEEEECCCCCCCCCC-CEEEEEECCCEEEEEECCCCCCEEEECCEEEE
Q ss_conf             -----555689-8---8997------3-8980999934677760131-00245415985873210478606871452899
Q gi|254781225|r  545 -----EAGKAN-P---SLIR------L-MGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPF  607 (789)
Q Consensus       545 -----~~~~~~-~---~la~------l-~g~r~~~~~E~~~~~~~~~-~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~  607 (789)
                           .++... .   ++..      . -+.+++++.|.+.-..-.. +++|.|                .+......++
T Consensus        97 ~~e~~~~~~~~i~~ir~l~~~~~~~~~~~~~kviiiDe~d~l~~~a~n~Llk~l----------------E~~~~~~~~I  160 (250)
T 1njg_A           97 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL----------------EEPPEHVKFL  160 (250)
T ss_dssp             EEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHH----------------HSCCTTEEEE
T ss_pred             EEEECCHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH----------------HCCCCCCEEE
T ss_conf             899610320789999999999974651589879999781539999999999998----------------6278871799


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf             973886342679841664689996588
Q gi|254781225|r  608 IVPNKHLFVRNPDDAWWRRYIVIPFDK  634 (789)
Q Consensus       608 ~~~N~~P~~~~~d~~~~rR~~iipF~~  634 (789)
                      ++||+.+.+.   .++-.|..+|.|..
T Consensus       161 l~t~~~~~l~---~ti~SRc~~i~~~~  184 (250)
T 1njg_A          161 LATTDPQKLP---VTILSRCLQFHLKA  184 (250)
T ss_dssp             EEESCGGGSC---HHHHTTSEEEECCC
T ss_pred             EECCCHHHHH---HHHHCCCCEEEEEC
T ss_conf             9669845534---87856666323206


No 13 
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.58  E-value=0.0018  Score=39.34  Aligned_cols=155  Identities=15%  Similarity=0.062  Sum_probs=73.8

Q ss_pred             HHCCCHHHHHHHHHHHHHHHC------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH-HHHHHCCC--CC
Q ss_conf             887999999999999999975------9874337999970788625789999999723300034426-76420124--55
Q gi|254781225|r  475 GYFESEEVMDYFTRCVGMALL------GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA-SDIMQNRP--PE  545 (789)
Q Consensus       475 ~~~~d~e~~~~l~~~~g~~l~------g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~-~~~~~~~~--~~  545 (789)
                      +|.|-+++.+.|++.+-+-|.      +.....+-++|||+.|+|||++.+.|..-++......++. .+.....+  ..
T Consensus       135 di~Gl~~~k~~l~e~v~~pl~~~~~~~~~~~p~rgiLL~GPPGtGKT~lakaiA~e~~~~~~~~v~~s~l~~~~~g~se~  214 (444)
T 2zan_A          135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEK  214 (444)
T ss_dssp             GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCC
T ss_pred             HHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHH
T ss_conf             96599999999999999997499977489999971477798999789999999987216855987132123665156889


Q ss_pred             CCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECC-CCCCEEEECCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             556898899738980999934677760131002454159858732104-7860687145289997388634267984166
Q gi|254781225|r  546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY-GNTYSESPASFTPFIVPNKHLFVRNPDDAWW  624 (789)
Q Consensus       546 ~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~-~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~  624 (789)
                      .-..-++.|+.....++++.|.+.-..-..+.-..  +...+....+. -+.+..-.....++.+||++   ..-|.++.
T Consensus       215 ~i~~~f~~a~~~~p~ii~iDeid~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~vlvi~aTN~p---~~lD~Al~  289 (444)
T 2zan_A          215 LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE--AARRIKTEFLVQMQGVGVDNDGILVLGATNIP---WVLDSAIR  289 (444)
T ss_dssp             THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCG--GGHHHHHHHHTTTTCSSCCCSSCEEEEEESCG---GGSCHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC---CCCCHHHH
T ss_conf             99999999997088531025555530366665430--47889999999986034678987898506997---66879898


Q ss_pred             EEEE-EEECCC
Q ss_conf             4689-996588
Q gi|254781225|r  625 RRYI-VIPFDK  634 (789)
Q Consensus       625 rR~~-iipF~~  634 (789)
                      ||+- .|.|+.
T Consensus       290 rRfd~~I~i~~  300 (444)
T 2zan_A          290 RRFEKRIYIPL  300 (444)
T ss_dssp             TTCCEEEECCC
T ss_pred             HHCCEEEEECC
T ss_conf             13617988589


No 14 
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, acetylation, ATP-binding, cytoplasm, lipid-binding, nucleotide-binding; HET: ADP; 3.00A {Mus musculus}
Probab=96.38  E-value=0.017  Score=32.90  Aligned_cols=95  Identities=13%  Similarity=0.069  Sum_probs=54.4

Q ss_pred             HHCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC-
Q ss_conf             8879999999999999999759-------87433799997078862578999999972330003442676420124555-
Q gi|254781225|r  475 GYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA-  546 (789)
Q Consensus       475 ~~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~-  546 (789)
                      +|.|-++..+.+++.+-+.|..       +....+-++++|+.|+|||++.+.+...+|-.........+.+...+... 
T Consensus        16 di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~gvLl~GppGtGKT~la~aia~~~~~~~~~i~~s~l~~~~~~~~~~   95 (301)
T 3cf0_A           16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEA   95 (301)
T ss_dssp             GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTT
T ss_pred             HHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHCCCCCCCHHH
T ss_conf             94786999999999999987499999867999886378879999988999999999949976998879951344650689


Q ss_pred             -CCCCHHHHHHCCCEEEEEECCCC
Q ss_conf             -56898899738980999934677
Q gi|254781225|r  547 -GKANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       547 -~~~~~~la~l~g~r~~~~~E~~~  569 (789)
                       -..-++.|....-.++++.|.+.
T Consensus        96 ~~~~~f~~a~~~~p~il~iDeid~  119 (301)
T 3cf0_A           96 NVREIFDKARQAAPCVLFFDELDS  119 (301)
T ss_dssp             HHHHHHHHHHHTCSEEEEECSTTH
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             999999999973994797403554


No 15 
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.22  E-value=0.0025  Score=38.36  Aligned_cols=154  Identities=15%  Similarity=0.140  Sum_probs=78.6

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHH
Q ss_conf             98887999999999999999975987433799997078862578999999972330003442676420124555568988
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS  552 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (789)
                      |+++.|.+++.+.+..++-....+....+ -++++|+.|.||+|+..++.+.+|-.............      +.....
T Consensus        11 l~divGq~~~~~~l~~~l~~~~~~~~~~~-~iLl~GPpG~GKTtlA~~iA~~l~~~~~~~~~~~~~~~------~~~~~~   83 (324)
T 1hqc_A           11 LDEYIGQERLKQKLRVYLEAAKARKEPLE-HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP------GDLAAI   83 (324)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHHHHHCSCCC-CCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH------HHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC------HHHHHH
T ss_conf             88837989999999999998873489998-59998979951999999999986889644568632411------068888


Q ss_pred             HHHH-CCCEEEEEECCCCCCCCCCCEEEEEE---CCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE-
Q ss_conf             9973-89809999346777601310024541---598587321047860687145289997388634267984166468-
Q gi|254781225|r  553 LIRL-MGSRIVIISETNENDEINAAKIKQMT---GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-  627 (789)
Q Consensus       553 la~l-~g~r~~~~~E~~~~~~~~~~~~K~lt---ggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~-  627 (789)
                      +... ..+..+...+...........+....   --|.+..............+.+.++++||+...+   +.++.||. 
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l---~~~l~~~~~  160 (324)
T 1hqc_A           84 LANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI---TAPLLSRFG  160 (324)
T ss_dssp             HTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSC---SCSTTTTCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCHHHC---CHHHHCCHH
T ss_conf             87765215432215776643665530321000010047852686776445588750577631875542---244311122


Q ss_pred             EEEECCCCC
Q ss_conf             999658878
Q gi|254781225|r  628 IVIPFDKPI  636 (789)
Q Consensus       628 ~iipF~~~~  636 (789)
                      ..+.|....
T Consensus       161 ~~~~~~~~~  169 (324)
T 1hqc_A          161 IVEHLEYYT  169 (324)
T ss_dssp             CEEECCCCC
T ss_pred             HHHHHCCCC
T ss_conf             444415789


No 16 
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.18  E-value=0.0022  Score=38.71  Aligned_cols=255  Identities=13%  Similarity=0.086  Sum_probs=116.9

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC---CCC------CHH-HHHH---CCC-
Q ss_conf             99999999999999997598743379999707886257899999997233000---344------267-6420---124-
Q gi|254781225|r  478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV---INA------EAS-DIMQ---NRP-  543 (789)
Q Consensus       478 ~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~---~~~------~~~-~~~~---~~~-  543 (789)
                      +-++-++.+..++.-.+.........++++|+.|.||+++.+.+..-+.+...   ...      +.. .+..   ..+ 
T Consensus        21 ~Re~e~~~l~~~l~~~~~~~~~~~~~~li~GppGtGKT~~ar~la~~l~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~  100 (389)
T 1fnn_A           21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNI  100 (389)
T ss_dssp             TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHCCCHHHHHHHHHHHHCC
T ss_conf             76999999999999998667988881799889999699999999998531258976985531116589999888887233


Q ss_pred             --CCCCCCCH--------HHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCC
Q ss_conf             --55556898--------89973898099993467776013100245415985873210478606871452899973886
Q gi|254781225|r  544 --PEAGKANP--------SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH  613 (789)
Q Consensus       544 --~~~~~~~~--------~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~  613 (789)
                        ...+....        .+....+..+.+..|.+.-.......+-.+          . ............++..+|..
T Consensus       101 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lde~~~l~~~~~~~~~~~----------~-~~~~~~~~~~~~~I~~~~~~  169 (389)
T 1fnn_A          101 PFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRL----------G-QEADKLGAFRIALVIVGHND  169 (389)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHH----------T-TCHHHHSSCCEEEEEEESST
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH----------H-HHHHHCCCCCEEEEEECCCC
T ss_conf             323246516689999999986416654331058877668888889999----------9-87652157717999926764


Q ss_pred             CCCCCCCCCEEEEE--EEEECCCCCCCC--------------CCCHHHHH----C---C-----CCHHHHHHHHHHHHH-
Q ss_conf             34267984166468--999658878887--------------87833422----0---1-----204479999999999-
Q gi|254781225|r  614 LFVRNPDDAWWRRY--IVIPFDKPIANR--------------DASFAQKL----E---T-----KYTLEAKKWFLKGVK-  664 (789)
Q Consensus       614 P~~~~~d~~~~rR~--~iipF~~~~~~~--------------d~~~~~~~----~---~-----~e~~~i~~w~l~g~~-  664 (789)
                      ......+..+.+|+  ..+.|...-.++              ...+.+..    .   .     ....|-..+++.-+. 
T Consensus       170 ~~~~~~~~~~~~~~~~~~i~~~p~~~~~l~~Il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~Gd~R~ai~ll~~  249 (389)
T 1fnn_A          170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR  249 (389)
T ss_dssp             HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHH
T ss_pred             CHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             22220252233025774002799999999999999998734456778889999999989875002358999999999999


Q ss_pred             ---HHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH--------------HHEEECCCCEECHHHHHHHHHHHHHHCCC
Q ss_conf             ---9998788988788999999999984263888875--------------43262688411179999999999985046
Q gi|254781225|r  665 ---AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------------DCCDIGENLWEESHSLAKSYSEYREQELN  727 (789)
Q Consensus       665 ---~~~~~g~~~~~p~~v~~a~~~y~~~~D~v~~fi~--------------e~ce~~~~~~~~~~~l~~~y~~~~~~~~~  727 (789)
                         .....+.....++.|..+.++...  +.+...+.              .+........+...++|+.|...|+..+ 
T Consensus       250 a~~~a~~~~~~~i~~~~v~~a~~~~~~--~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~y~~l~~~~~-  326 (389)
T 1fnn_A          250 SAYAAQQNGRKHIAPEDVRKSSKEVLF--GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYG-  326 (389)
T ss_dssp             HHHHHHHTTCSSCCHHHHHHHHHHHSC--CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHC--CCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCC-
T ss_conf             999998618787899999999999975--61789986399989999999999987378875109999999999999819-


Q ss_pred             CCCCCCCHHHHHHHHHH---CCCC
Q ss_conf             67555452568999986---3542
Q gi|254781225|r  728 YDRKRISTRTVTLNLKQ---KGFI  748 (789)
Q Consensus       728 ~~~~~~s~~~~~~~l~~---~g~~  748 (789)
                        ..+.+.+.|...|.+   .|+.
T Consensus       327 --~~~~~~~~~~~~l~~L~~~gli  348 (389)
T 1fnn_A          327 --ERPRVHSQLWSYLNDLREKGIV  348 (389)
T ss_dssp             --CCCCCHHHHHHHHHHHHHTTSS
T ss_pred             --CCCCCHHHHHHHHHHHHHCCCC
T ss_conf             --9987699999999999977981


No 17 
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, alternative splicing, ATP-binding, hydrolase, magnesium; HET: ADP; 2.00A {Homo sapiens}
Probab=96.16  E-value=0.00092  Score=41.28  Aligned_cols=151  Identities=15%  Similarity=0.080  Sum_probs=71.8

Q ss_pred             HCCCHHHHHHHHHHHHHHHCCC------CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC--CC
Q ss_conf             8799999999999999997598------743379999707886257899999997233000344267642012455--55
Q gi|254781225|r  476 YFESEEVMDYFTRCVGMALLGG------NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE--AG  547 (789)
Q Consensus       476 ~~~d~e~~~~l~~~~g~~l~g~------~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~--~~  547 (789)
                      |-|-++..+.|++.+-+-|...      ....+=++|+|+-|+||+++.+.|..-+|-.........+.+...+..  .-
T Consensus        86 I~Gl~~~k~~l~e~v~~pl~~p~~f~~~~~pp~GvLL~GPPGtGKT~lakaiA~e~g~~~~~i~~~~l~s~~~g~~e~~i  165 (357)
T 3d8b_A           86 IAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMV  165 (357)
T ss_dssp             SCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCHHHHH
T ss_conf             70899999999999999974999897469998458877979987999999998422898599406774023466069999


Q ss_pred             CCCHHHHHHCCCEEEEEECCCCCCCCCC----CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCE
Q ss_conf             6898899738980999934677760131----002454159858732104786068714528999738863426798416
Q gi|254781225|r  548 KANPSLIRLMGSRIVIISETNENDEINA----AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW  623 (789)
Q Consensus       548 ~~~~~la~l~g~r~~~~~E~~~~~~~~~----~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~  623 (789)
                      ..-+..|+....-++++.|.+.-..-..    .....+..  .+... +-... ..-.....++.+||++   ..-|.|+
T Consensus       166 r~lf~~a~~~~p~IifiDeid~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~-~~~~~~VivI~tTN~~---~~LD~Al  238 (357)
T 3d8b_A          166 RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKT--EFLVQ-LDGAT-TSSEDRILVVGATNRP---QEIDEAA  238 (357)
T ss_dssp             HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHH--HHHHH-HHC-----CCCCEEEEEEESCG---GGBCHHH
T ss_pred             HHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCCCHHHHHH--HHHHH-HHHCC-CCCCCCEEEEEECCCC---CCCCHHH
T ss_conf             9999998743982553112333202356546642266777--89999-86502-5789848998708996---6578877


Q ss_pred             EEEE-EEEECC
Q ss_conf             6468-999658
Q gi|254781225|r  624 WRRY-IVIPFD  633 (789)
Q Consensus       624 ~rR~-~iipF~  633 (789)
                      .||+ ..|.|.
T Consensus       239 ~Rrfd~~I~i~  249 (357)
T 3d8b_A          239 RRRLVKRLYIP  249 (357)
T ss_dssp             HTTCCEEEECC
T ss_pred             HCCCCCEEEEC
T ss_conf             19763289956


No 18 
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.95  E-value=0.021  Score=32.23  Aligned_cols=55  Identities=22%  Similarity=0.331  Sum_probs=44.1

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             79999999999999999759874--33799997078862578999999972330003
Q gi|254781225|r  477 FESEEVMDYFTRCVGMALLGGNK--AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI  531 (789)
Q Consensus       477 ~~d~e~~~~l~~~~g~~l~g~~~--~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~  531 (789)
                      ++|+++.+.+.+.+-.+..|...  ..+.++++|+.|+||||+...|..-++...+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ill~GpPGsGKTtlak~la~~~~~~~~~   62 (253)
T 2p5t_B            6 YTDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVI   62 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEE
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             489999999999999998263256798799988999988899999999984897399


No 19 
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, endosome, nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.90  E-value=0.0035  Score=37.44  Aligned_cols=131  Identities=15%  Similarity=0.075  Sum_probs=65.2

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC--CCCCHHHHHHCCCEEEEEECCCCCCCCCC
Q ss_conf             7433799997078862578999999972330003442676420124555--56898899738980999934677760131
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA--GKANPSLIRLMGSRIVIISETNENDEINA  575 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~--~~~~~~la~l~g~r~~~~~E~~~~~~~~~  575 (789)
                      ....+-++|+|+-|+|||++.+.|..-+|-.........+++..-+...  -..-+..++...-.++++.|.+.--.   
T Consensus        81 ~~p~~giLL~GPpGtGKT~la~aiA~e~~~~~~~v~~~~l~s~~~g~~e~~l~~~f~~a~~~~p~il~iDeid~l~~---  157 (355)
T 2qp9_X           81 RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG---  157 (355)
T ss_dssp             CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEECCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHH---
T ss_conf             99996268879999988999999998608996130088861455538999999999999854990686310355553---


Q ss_pred             CEEEEEECCCEEEEE-EC-CCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEE-EEECCC
Q ss_conf             002454159858732-10-478606871452899973886342679841664689-996588
Q gi|254781225|r  576 AKIKQMTGGDCMTAR-LN-YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI-VIPFDK  634 (789)
Q Consensus       576 ~~~K~ltggD~i~ar-~~-~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~-iipF~~  634 (789)
                      .......+.+..... .+ .-+..........++.+||++-   .-|.++.||+- .|.|..
T Consensus       158 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivI~tTN~p~---~ld~al~rRfd~~i~i~~  216 (355)
T 2qp9_X          158 TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW---QLDSAIRRRFERRIYIPL  216 (355)
T ss_dssp             ------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG---GSCHHHHHTCCEEEECCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCH---HCCHHHHCHHHEEEEECC
T ss_conf             15777753169999999999862434578648996079803---258988572132876279


No 20 
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21
Probab=95.63  E-value=0.039  Score=30.47  Aligned_cols=53  Identities=17%  Similarity=0.224  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCC--CCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             79999999999999999759874--337999970788625789999999723300
Q gi|254781225|r  477 FESEEVMDYFTRCVGMALLGGNK--AQRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       477 ~~d~e~~~~l~~~~g~~l~g~~~--~~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      |.|+++.+.+.+.+-..+.+...  ..+.++++|+.|+|||++...+..-+|...
T Consensus         7 ~~~~~~~~~l~~~l~~~~~~~~~~~~P~~ill~GppGsGKT~la~~la~~~~~~~   61 (287)
T 1gvn_B            7 FTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNV   61 (287)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf             7899999999999999864876789998999889897658999999999809990


No 21 
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.54  E-value=0.025  Score=31.70  Aligned_cols=152  Identities=19%  Similarity=0.188  Sum_probs=72.7

Q ss_pred             HCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC--
Q ss_conf             879999999999999999759-------87433799997078862578999999972330003442676420124555--
Q gi|254781225|r  476 YFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA--  546 (789)
Q Consensus       476 ~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~--  546 (789)
                      |-|-++..+.+++.+.+.+..       +....+-++++|+.|+|||++...+..-+|-.........+.....+...  
T Consensus        19 i~G~~~~k~~l~e~i~~~l~~~~~~~~~g~~~p~giLL~GppGtGKT~la~~iA~~~~~~~~~i~~s~l~~~~~g~~~~~   98 (285)
T 3h4m_A           19 IGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASL   98 (285)
T ss_dssp             SCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHH
T ss_pred             HCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCHHHHH
T ss_conf             42699999999999999850999998679998865788798999877999999998099868988899877501057999


Q ss_pred             CCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEE----ECC-CCCCEEEECCEEEEEECCCCCCCCCCCC
Q ss_conf             56898899738980999934677760131002454159858732----104-7860687145289997388634267984
Q gi|254781225|r  547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNY-GNTYSESPASFTPFIVPNKHLFVRNPDD  621 (789)
Q Consensus       547 ~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar----~~~-~~~~~~~~p~~~~~~~~N~~P~~~~~d~  621 (789)
                      -..-++.|+....-+++++|.+.-..   ..--...++|.-..+    .+. -+.+ .-.....++.+||+ |  ..-|.
T Consensus        99 l~~~f~~a~~~~P~Il~iDeid~l~~---~~~~~~~~~~~~~~~~~~~~L~~l~~~-~~~~~v~vIatTn~-~--~~id~  171 (285)
T 3h4m_A           99 VKDIFKLAKEKAPSIIFIDEIDAIAA---KRTDALTGGDREVQRTLMQLLAEMDGF-DARGDVKIIGATNR-P--DILDP  171 (285)
T ss_dssp             HHHHHHHHHHTCSEEEEEETTHHHHB---CCSSSCCGGGGHHHHHHHHHHHHHHTT-CSSSSEEEEEECSC-G--GGBCH
T ss_pred             HHHHHHHHHHCCCCEEEEHHHHHHHC---CCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCCCEEEEECCCC-C--CCCCH
T ss_conf             99999999970990898541000214---578999988778999999999975176-78899899980799-4--10698


Q ss_pred             CEEE--EEE-EEECCC
Q ss_conf             1664--689-996588
Q gi|254781225|r  622 AWWR--RYI-VIPFDK  634 (789)
Q Consensus       622 ~~~r--R~~-iipF~~  634 (789)
                      ++.|  |+- .|.|..
T Consensus       172 al~R~gRfd~~i~i~~  187 (285)
T 3h4m_A          172 AILRPGRFDRIIEVPA  187 (285)
T ss_dssp             HHHSTTSEEEEEECCC
T ss_pred             HHCCCCCCCCEEEECC
T ss_conf             6748875661214569


No 22 
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.39  E-value=0.0023  Score=38.63  Aligned_cols=133  Identities=11%  Similarity=0.085  Sum_probs=70.7

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHH
Q ss_conf             98887999999999999999975987433799997078862578999999972330003442676420124555568988
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS  552 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (789)
                      ++++.|.+++++.|+.++-   .+.. .  .++++|+.|.||+|+..++..-++...... +...+..     +.....+
T Consensus        16 ~~diig~~~~~~~l~~~i~---~~~~-~--~~Ll~Gp~G~GKTtla~~iak~l~~~~~~~-~~~~~n~-----~~~~~~~   83 (226)
T 2chg_A           16 LDEVVGQDEVIQRLKGYVE---RKNI-P--HLLFSGPPGTGKTATAIALARDLFGENWRD-NFIEMNA-----SDERGID   83 (226)
T ss_dssp             GGGCCSCHHHHHHHHHHHH---TTCC-C--CEEEECSTTSSHHHHHHHHHHHHHGGGGGG-GEEEEET-----TCTTCHH
T ss_pred             HHHHCCHHHHHHHHHHHHH---CCCC-C--EEEEECCCCCCHHHHHHHHHHHHHCCCCCC-CCCEEEC-----CCCCCHH
T ss_conf             9992098999999999997---6999-8--598889999988999999999984355567-7132346-----7767699


Q ss_pred             HH-------------HHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCC
Q ss_conf             99-------------73898099993467776013100245415985873210478606871452899973886342679
Q gi|254781225|r  553 LI-------------RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP  619 (789)
Q Consensus       553 la-------------~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~  619 (789)
                      ..             .-...+++++.|.+.-..-....|..+.               .+..+...+++.+|+.-   .-
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~iiide~~~l~~~~q~~ll~~l---------------e~~~~~~~~i~~~~~~~---~l  145 (226)
T 2chg_A           84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTM---------------EMYSKSCRFILSCNYVS---RI  145 (226)
T ss_dssp             HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHH---------------HHTTTTEEEEEEESCGG---GS
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCHHHHHHHHHHH---------------HHCCCCCEEEECCCCHH---HC
T ss_conf             9999999998601126986699995112016899999988876---------------42776544773679856---58


Q ss_pred             CCCEEEEEEEEECCCC
Q ss_conf             8416646899965887
Q gi|254781225|r  620 DDAWWRRYIVIPFDKP  635 (789)
Q Consensus       620 d~~~~rR~~iipF~~~  635 (789)
                      ..++..|..+++|...
T Consensus       146 ~~~i~sr~~~i~~~~~  161 (226)
T 2chg_A          146 IEPIQSRCAVFRFKPV  161 (226)
T ss_dssp             CHHHHTTSEEEECCCC
T ss_pred             CHHHHCHHHHHHHCCC
T ss_conf             1778653566543012


No 23 
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.36  E-value=0.031  Score=31.15  Aligned_cols=55  Identities=18%  Similarity=0.198  Sum_probs=38.9

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHC---------C--CCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             98887999999999999999975---------9--8743379999707886257899999997233
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALL---------G--GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~---------g--~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ++++.|+++.++-|+.|+..-..         +  .......++++|+.|.||+|+..+|.+-+|-
T Consensus        38 l~dliGn~~~i~~L~~wL~~w~~~~~~~~~~~~~~~~~~~~~lLL~GPpG~GKTTla~~lAkelg~  103 (516)
T 1sxj_A           38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY  103 (516)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf             999539799999999999850320222221001245888877999899970399999999998199


No 24 
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.26  E-value=0.039  Score=30.47  Aligned_cols=94  Identities=15%  Similarity=0.077  Sum_probs=52.7

Q ss_pred             HHCCCHHHHHHHHHHHHHHHCCC------CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHC-CCCCCC
Q ss_conf             88799999999999999997598------74337999970788625789999999723300034426764201-245555
Q gi|254781225|r  475 GYFESEEVMDYFTRCVGMALLGG------NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN-RPPEAG  547 (789)
Q Consensus       475 ~~~~d~e~~~~l~~~~g~~l~g~------~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~-~~~~~~  547 (789)
                      ++.|-++..+-+++++.+...+.      ....+-++++|+.|+|||++...|..-+|-.... ++...+... .+....
T Consensus         7 di~G~~~~k~~l~~~v~~l~~~~~~~~~g~~~~~gvLL~GppGtGKT~la~aia~~~~~~~~~-v~~~~l~~~~~g~~~~   85 (262)
T 2qz4_A            7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLA-MAGAEFVEVIGGLGAA   85 (262)
T ss_dssp             SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE-EETTTTSSSSTTHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEE-EEHHHHCCCCCCHHHH
T ss_conf             972799999999999999869999997599999726886899898647999997335986699-8879952676770199


Q ss_pred             --CCCHHHHHHCCCEEEEEECCCC
Q ss_conf             --6898899738980999934677
Q gi|254781225|r  548 --KANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       548 --~~~~~la~l~g~r~~~~~E~~~  569 (789)
                        ..-++.|+...--++++.|.+.
T Consensus        86 ~l~~~F~~A~~~~p~Il~iDeid~  109 (262)
T 2qz4_A           86 RVRSLFKEARARAPCIVYIDEIDA  109 (262)
T ss_dssp             HHHHHHHHHHHTCSEEEEEECC--
T ss_pred             HHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             999999999970998998434302


No 25 
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.21  E-value=0.018  Score=32.69  Aligned_cols=95  Identities=14%  Similarity=0.068  Sum_probs=51.7

Q ss_pred             HHCCCHHHHHHHHHHHHHHHCCC------CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf             88799999999999999997598------743379999707886257899999997233000344267642012455556
Q gi|254781225|r  475 GYFESEEVMDYFTRCVGMALLGG------NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK  548 (789)
Q Consensus       475 ~~~~d~e~~~~l~~~~g~~l~g~------~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~  548 (789)
                      ++.|-+++.+.+.+++.+...+.      .+..+-++++|+.|.|||++...|..-+|-.........+.+.-.+.+...
T Consensus        13 Di~G~~~~k~~l~e~v~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~aia~e~~~~~~~v~~~~l~~~~~g~~~~~   92 (257)
T 1lv7_A           13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASR   92 (257)
T ss_dssp             GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCHHHHH
T ss_conf             95456999999999999987999999759999974675689998877999999987199769998578306124276999


Q ss_pred             --CCHHHHHHCCCEEEEEECCCC
Q ss_conf             --898899738980999934677
Q gi|254781225|r  549 --ANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       549 --~~~~la~l~g~r~~~~~E~~~  569 (789)
                        .-+..|....--++++.|.+.
T Consensus        93 l~~~f~~a~~~~P~Il~iDeid~  115 (257)
T 1lv7_A           93 VRDMFEQAKKAAPCIIFIDEIDA  115 (257)
T ss_dssp             HHHHHHHHHTTCSEEEEETTHHH
T ss_pred             HHHHHHHHHHCCCEEEEEECHHH
T ss_conf             99999999975998999977566


No 26 
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.17  E-value=0.013  Score=33.71  Aligned_cols=48  Identities=15%  Similarity=0.242  Sum_probs=32.1

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             98887999999999999999975987433799997078862578999999972
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ++++.+.+++++.++.++.   .+.. .+ .++++|+.|.||+|+...+.+-+
T Consensus        13 ~~diig~~~~~~~L~~~i~---~~~~-~~-~lLl~Gp~G~GKTt~a~~la~~l   60 (354)
T 1sxj_E           13 LNALSHNEELTNFLKSLSD---QPRD-LP-HLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             GGGCCSCHHHHHHHHTTTT---CTTC-CC-CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHH---CCCC-CC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9982594999999999997---7998-77-59888979998999999999986


No 27 
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.81  E-value=0.086  Score=28.19  Aligned_cols=96  Identities=23%  Similarity=0.221  Sum_probs=55.3

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHC------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf             8887999999999999999975------9874337999970788625789999999723300034426764201245555
Q gi|254781225|r  474 SGYFESEEVMDYFTRCVGMALL------GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG  547 (789)
Q Consensus       474 ~~~~~d~e~~~~l~~~~g~~l~------g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~  547 (789)
                      ++|.|-++..+-+.+.+-+.|.      +.....+-++++|+-|.|||++.+.+..-++......++...+.......+.
T Consensus        12 ~dI~Gl~~~k~~l~e~i~~pl~~~~~~~~~~~p~~gvLL~GPpGtGKT~la~aiA~e~~~~~~~~v~~~~l~s~~~g~~~   91 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE   91 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCH
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHH
T ss_conf             99457599999999999999739998727999998168889899988999999999705795799777997572330999


Q ss_pred             ---CCCHHHHHHCCCEEEEEECCCC
Q ss_conf             ---6898899738980999934677
Q gi|254781225|r  548 ---KANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       548 ---~~~~~la~l~g~r~~~~~E~~~  569 (789)
                         ..-++.|+.....++++.|.+.
T Consensus        92 ~~i~~~f~~a~~~~p~ii~ideid~  116 (322)
T 1xwi_A           92 KLVKNLFQLARENKPSIIFIDEIDS  116 (322)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEETTTG
T ss_pred             HHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf             9999999999863996687420355


No 28 
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.73  E-value=0.021  Score=32.24  Aligned_cols=161  Identities=11%  Similarity=0.104  Sum_probs=78.3

Q ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHH--HHCCCC---C---CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf             789999988-87999999999999999--975987---4---33799997078862578999999972330003442676
Q gi|254781225|r  467 QEFLDLVSG-YFESEEVMDYFTRCVGM--ALLGGN---K---AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD  537 (789)
Q Consensus       467 p~~~~~l~~-~~~d~e~~~~l~~~~g~--~l~g~~---~---~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~  537 (789)
                      ..+.+.|++ ++|-++.++-+...+-.  ...+..   +   ..+=++|+||.|.||+.+.+.|...++..... .+...
T Consensus         7 ~ei~~~L~~~ViGQd~A~~~l~~~v~~~~~r~~~~~~~~~~~~p~giLl~GPpG~GKT~lAkalA~~l~~~~~~-~~~s~   85 (310)
T 1ofh_A            7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATK   85 (310)
T ss_dssp             HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE-EEGGG
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCHHH-CCCCC
T ss_conf             99999865602495999999999999899873457877677898669998999988889999998874321220-35532


Q ss_pred             HHH-CC-CCCCCCCC--------HHHHHHCCCEEEEEECCCCCCCCC---------CCE---EEEEECCCEEEEEECCCC
Q ss_conf             420-12-45555689--------889973898099993467776013---------100---245415985873210478
Q gi|254781225|r  538 IMQ-NR-PPEAGKAN--------PSLIRLMGSRIVIISETNENDEIN---------AAK---IKQMTGGDCMTARLNYGN  595 (789)
Q Consensus       538 ~~~-~~-~~~~~~~~--------~~la~l~g~r~~~~~E~~~~~~~~---------~~~---~K~ltggD~i~ar~~~~~  595 (789)
                      +.. .. ...++.+-        ..+++..-..+++++|.++-..-.         ++.   +-.++-|..+  ..++  
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Iif~DEIdk~~~~~~~~~~~~~~~~v~~~LL~~~dg~~~--~~~~--  161 (310)
T 1ofh_A           86 FTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV--STKH--  161 (310)
T ss_dssp             GSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE--EETT--
T ss_pred             CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEE--ECCC--
T ss_conf             110001212555202111233126543245774588605855374557886232455799874288609988--5588--


Q ss_pred             CCEEEECCEEEEEECCCCC--CCCCCCCCEEEEE-EEEECCC
Q ss_conf             6068714528999738863--4267984166468-9996588
Q gi|254781225|r  596 TYSESPASFTPFIVPNKHL--FVRNPDDAWWRRY-IVIPFDK  634 (789)
Q Consensus       596 ~~~~~~p~~~~~~~~N~~P--~~~~~d~~~~rR~-~iipF~~  634 (789)
                      .  ....+..++++++..-  .-.+.+.++.+|+ .+|.|+.
T Consensus       162 ~--~i~~sni~fi~~~a~~~~~~~~~~Pel~~R~d~ii~~~~  201 (310)
T 1ofh_A          162 G--MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA  201 (310)
T ss_dssp             E--EEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCC
T ss_pred             E--EEECCCEEEECCCCHHHCCCCCCCHHHHCCCEEEEECCC
T ss_conf             0--897573168715622104823388567477748997478


No 29 
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell cycle, hydrolase, membrane metal-binding, metalloprotease; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.49  E-value=0.038  Score=30.54  Aligned_cols=70  Identities=16%  Similarity=0.084  Sum_probs=43.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC--CCCCHHHHHHCCCEEEEEECCCC
Q ss_conf             33799997078862578999999972330003442676420124555--56898899738980999934677
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA--GKANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~--~~~~~~la~l~g~r~~~~~E~~~  569 (789)
                      ...-++++|+.|.|||++...|..-+|-..+......+.+.-.+.+.  =..-+..|+....-++++.|.+.
T Consensus        43 ~~~gvLl~GppGtGKT~la~aia~e~~~~~~~i~~s~l~~~~~g~~~~~l~~~f~~A~~~~p~il~iDeid~  114 (268)
T 2r62_A           43 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDA  114 (268)
T ss_dssp             CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGG
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECHHH
T ss_conf             987468768999980079999999749987998858941604536499999999999972991899871776


No 30 
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.37  E-value=0.043  Score=30.18  Aligned_cols=34  Identities=24%  Similarity=0.418  Sum_probs=28.0

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             8743379999707886257899999997233000
Q gi|254781225|r  497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      .++.+.++++.|+.|+||||+.+.|...+|-...
T Consensus         4 ~~~~~~i~~l~G~~GsGKST~a~~La~~l~~~~~   37 (175)
T 1knq_A            4 TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFL   37 (175)
T ss_dssp             CCTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             8999818999879999989999999999698834


No 31 
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.35  E-value=0.046  Score=29.98  Aligned_cols=139  Identities=12%  Similarity=0.122  Sum_probs=72.7

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHH-HHCCCCCCCCCC-
Q ss_conf             988879999999999999999759874337999970788625789999999723300034426764-201245555689-
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI-MQNRPPEAGKAN-  550 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~-~~~~~~~~~~~~-  550 (789)
                      ++++.|.++++..|+.++-   .+... +  ++++|+.|.||+|+...+.+.++...........- ...++-...... 
T Consensus        24 ~~divg~~~~~~~l~~~i~---~~~~~-~--lLl~GppG~GKTtla~~la~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   97 (340)
T 1sxj_C           24 LDEVYGQNEVITTVRKFVD---EGKLP-H--LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQI   97 (340)
T ss_dssp             GGGCCSCHHHHHHHHHHHH---TTCCC-C--EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHH
T ss_pred             HHHHCCCHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf             9990594999999999997---79998-6--9888959999999999999986246677634662343347725898888


Q ss_pred             HHHHH-----HCCCEEEEEECCCCCCCCCCC-EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             88997-----389809999346777601310-024541598587321047860687145289997388634267984166
Q gi|254781225|r  551 PSLIR-----LMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW  624 (789)
Q Consensus       551 ~~la~-----l~g~r~~~~~E~~~~~~~~~~-~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~  624 (789)
                      ...+.     -.+.+++++.|.+.-..-... .+|.|.                ++.....++++||+.-.+   ..++.
T Consensus        98 ~~~~~~~~~~~~~~kviiiDe~d~l~~~~qn~Ll~~le----------------~~~~~~~~il~~n~~~~i---~~~l~  158 (340)
T 1sxj_C           98 KDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIE----------------RYTKNTRFCVLANYAHKL---TPALL  158 (340)
T ss_dssp             HHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHH----------------HTTTTEEEEEEESCGGGS---CHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHH----------------HCCCCEEEEECCCCHHHH---HHHHH
T ss_conf             88777665145774899995532413777999999998----------------557652664314706552---68775


Q ss_pred             EEEEEEECCCCC
Q ss_conf             468999658878
Q gi|254781225|r  625 RRYIVIPFDKPI  636 (789)
Q Consensus       625 rR~~iipF~~~~  636 (789)
                      +|..++.|...-
T Consensus       159 sr~~~~~~~~~~  170 (340)
T 1sxj_C          159 SQCTRFRFQPLP  170 (340)
T ss_dssp             TTSEEEECCCCC
T ss_pred             HHHHHHHCCCCC
T ss_conf             345510137898


No 32 
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.29  E-value=0.1  Score=27.64  Aligned_cols=107  Identities=12%  Similarity=0.135  Sum_probs=58.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf             37888875794789999988879999999999999999759874337999970788625789999999723300034426
Q gi|254781225|r  456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA  535 (789)
Q Consensus       456 ~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~  535 (789)
                      ..+.|+.-.-.....+-|.+      ++.+++.---|.-.| ....+-++++|+.|+|||++.+.|..-+|-........
T Consensus        35 P~v~~~Di~G~~~~k~~l~e------~i~~l~~~~~~~~~g-~~~~rgiLL~GPpGtGKT~la~aiA~e~~~~~~~i~~s  107 (278)
T 1iy2_A           35 PKVTFKDVAGAEEAKEELKE------IVEFLKNPSRFHEMG-ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS  107 (278)
T ss_dssp             CCCCGGGSSSCHHHHHHHHH------HHHHHHCHHHHHHTT-CCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCCCHHHHCCHHHHHHHHHH------HHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEHH
T ss_conf             89989997169999999999------999855999998679-99888468768744586489999999749976998869


Q ss_pred             HHHHHCCCCCC--CCCCHHHHHHCCCEEEEEECCCC
Q ss_conf             76420124555--56898899738980999934677
Q gi|254781225|r  536 SDIMQNRPPEA--GKANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       536 ~~~~~~~~~~~--~~~~~~la~l~g~r~~~~~E~~~  569 (789)
                      .+++.--+.+.  =..-++.|+...--++++.|.+.
T Consensus       108 ~l~s~~~gese~~l~~~F~~A~~~~P~Il~iDEiD~  143 (278)
T 1iy2_A          108 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA  143 (278)
T ss_dssp             HHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf             964334308999999999999976997999977166


No 33 
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.11  E-value=0.041  Score=30.31  Aligned_cols=42  Identities=31%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             HHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             999759874337999970788625789999999723300034
Q gi|254781225|r  491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN  532 (789)
Q Consensus       491 g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~  532 (789)
                      ...|++......++.+.|+-|+||||+.+.|...||...+..
T Consensus        11 ~~~~~~~~~k~~iI~I~G~~GSGKTTla~~L~~~l~~~~vi~   52 (207)
T 2qt1_A           11 SSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS   52 (207)
T ss_dssp             ---CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred             CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             233646899839999989898859999999999859984998


No 34 
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.99  E-value=0.14  Score=26.78  Aligned_cols=46  Identities=24%  Similarity=0.391  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             9999999999999759874337999970788625789999999723300
Q gi|254781225|r  481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       481 e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      +.++++.+-+   +.-.......+-+.|+.|+||||+.+.|...++..+
T Consensus         5 ~~~~~~~~~~---~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~   50 (201)
T 1rz3_A            5 DRIDFLCKTI---LAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQG   50 (201)
T ss_dssp             HHHHHHHHHH---HTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHH---HHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf             9999999999---705679988999889898899999999999835247


No 35 
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.98  E-value=0.14  Score=26.87  Aligned_cols=53  Identities=15%  Similarity=0.248  Sum_probs=35.7

Q ss_pred             HHHHHHHH----HCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             89999988----87999999999999999975987433799997078862578999999972330
Q gi|254781225|r  468 EFLDLVSG----YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       468 ~~~~~l~~----~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      .+.+.+++    |+|-+++++-+.-.   .+.|.     -++++|+-|.||||+.+.+..+++-.
T Consensus        17 ~~~~~~~~l~~~IvGq~~~~~~ll~a---l~~~~-----~vLl~GppGtGKT~lar~la~~~~~~   73 (331)
T 2r44_A           17 KIKEVIDEVGKVVVGQKYMINRLLIG---ICTGG-----HILLEGVPGLAKTLSVNTLAKTMDLD   73 (331)
T ss_dssp             HHHHHHHHHTTTCCSCHHHHHHHHHH---HHHTC-----CEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCCEECCHHHHHHHHHH---HHCCC-----CEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf             99999998544223769999999999---97699-----58998999852999999999755766


No 36 
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.97  E-value=0.19  Score=25.85  Aligned_cols=43  Identities=28%  Similarity=0.380  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             9999999999975987433799997078862578999999972
Q gi|254781225|r  483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       483 ~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      .+++.+++--.....++...++-+.|+-|+||||+...|...|
T Consensus        13 ~~~~~~~~~~~~~~~~~~P~iIgiaG~~GSGKSTla~~l~~~l   55 (290)
T 1odf_A           13 IEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             HHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9999999999734589999899967898788999999999999


No 37 
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.90  E-value=0.25  Score=25.10  Aligned_cols=141  Identities=14%  Similarity=0.169  Sum_probs=92.4

Q ss_pred             HHHHHHHHH-CCCHHHHHHHHHHHHHHHCCCC---CCCEEEEEEECCCCCHHHHHHHHHHH-HCCCC-CCCCCHHHHHHC
Q ss_conf             899999888-7999999999999999975987---43379999707886257899999997-23300-034426764201
Q gi|254781225|r  468 EFLDLVSGY-FESEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYA-FGNQY-VINAEASDIMQN  541 (789)
Q Consensus       468 ~~~~~l~~~-~~d~e~~~~l~~~~g~~l~g~~---~~~~~~~~~G~G~nGKSt~~~~l~~l-lG~~~-~~~~~~~~~~~~  541 (789)
                      ...+.|.+- ++-++.+.-+-+.+--|-.|-+   +.-..|++.|+-+-||+-+...|..+ ||+.. ....+.+.+...
T Consensus       551 ~L~~~L~~rV~gQ~eAI~~Ia~aI~~~raGl~~~~kP~gsfLF~GPtGvGKtelAkaLA~~lFGs~~~lIr~Dmsey~~~  630 (854)
T 1qvr_A          551 RLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK  630 (854)
T ss_dssp             SHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECHHHHCCC
T ss_conf             89999973306828999999999999961799999986589986688732799999999995289751699503674465


Q ss_pred             C------CC-------CCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEE
Q ss_conf             2------45-------5556898899738980999934677760131002454159858732104786068714528999
Q gi|254781225|r  542 R------PP-------EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI  608 (789)
Q Consensus       542 ~------~~-------~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~  608 (789)
                      .      |.       ..|+--.+-.+-..-.++.+.|.++-..---..|+++.....++  .-+++. +.|.. ..+||
T Consensus       631 ~svsrLiG~ppgyvGy~egG~LteaVr~~P~sVvLlDEIEKAh~~V~~~llq~ld~GrLt--Ds~Gr~-v~f~n-~IIIm  706 (854)
T 1qvr_A          631 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLT--DSHGRT-VDFRN-TVIIL  706 (854)
T ss_dssp             GGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEEC--CSSSCC-EECTT-EEEEE
T ss_pred             CCHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCHHHCCHHHHHHHHHHCCCCCEE--CCCCCE-EECCC-EEEEE
T ss_conf             302210279998777056871899998389849997237642899999998752578305--899988-84652-39999


Q ss_pred             ECCC
Q ss_conf             7388
Q gi|254781225|r  609 VPNK  612 (789)
Q Consensus       609 ~~N~  612 (789)
                      .||-
T Consensus       707 TSN~  710 (854)
T 1qvr_A          707 TSNL  710 (854)
T ss_dssp             ECCT
T ss_pred             ECCC
T ss_conf             6650


No 38 
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.86  E-value=0.2  Score=25.78  Aligned_cols=87  Identities=13%  Similarity=0.019  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC---CCCCHHHHHHCC
Q ss_conf             99999999999975987433799997078862578999999972330003442676420124555---568988997389
Q gi|254781225|r  482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA---GKANPSLIRLMG  558 (789)
Q Consensus       482 ~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~---~~~~~~la~l~g  558 (789)
                      +.+.++.++-.+-.+......-++++|+.|+|||++...|...+|-..+.......+.+..+...   -..-++.|+-..
T Consensus        45 i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~~iA~~~~~~~i~i~~~~~~~g~~~~~~~~~i~~~F~~A~~~~  124 (272)
T 1d2n_A           45 VLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQ  124 (272)
T ss_dssp             HHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHEECCCHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999860689998369988979998999999999997999066504522110143289999999999987517


Q ss_pred             CEEEEEECCC
Q ss_conf             8099993467
Q gi|254781225|r  559 SRIVIISETN  568 (789)
Q Consensus       559 ~r~~~~~E~~  568 (789)
                      --+++++|.+
T Consensus       125 p~Il~iDEid  134 (272)
T 1d2n_A          125 LSCVVVDDIE  134 (272)
T ss_dssp             EEEEEECCHH
T ss_pred             CCEEEEEHHH
T ss_conf             8378862686


No 39 
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.70  E-value=0.047  Score=29.91  Aligned_cols=26  Identities=38%  Similarity=0.515  Sum_probs=22.2

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             99970788625789999999723300
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      ++++|+.|.|||||+++|..+++...
T Consensus         3 i~i~G~~GsGKTTLlk~ia~~l~~~~   28 (178)
T 1ye8_A            3 IIITGEPGVGKTTLVKKIVERLGKRA   28 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf             99999999709999999997418787


No 40 
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.64  E-value=0.16  Score=26.32  Aligned_cols=71  Identities=17%  Similarity=0.180  Sum_probs=41.7

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC---CCCHHHHHHCCCEEEEEECCCC
Q ss_conf             74337999970788625789999999723300034426764201245555---6898899738980999934677
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~---~~~~~la~l~g~r~~~~~E~~~  569 (789)
                      .+..+-++++|+-|.|||++.+.|.+-+|-.... .+...+..+....+.   ..-++.|+...--++++.|.+.
T Consensus        46 ~~~p~giLl~GppGtGKT~la~aia~e~~~~~~~-i~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~il~iDeid~  119 (254)
T 1ixz_A           46 ARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT-ASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA  119 (254)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHH
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEE-EEHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf             9988657877787656279999999763997699-8869963534428999999999999976997999977155


No 41 
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.57  E-value=0.056  Score=29.41  Aligned_cols=140  Identities=14%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC-CCHHHHHHCCCCCCC-CCC
Q ss_conf             988879999999999999999759874337999970788625789999999723300034-426764201245555-689
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN-AEASDIMQNRPPEAG-KAN  550 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~-~~~~~~~~~~~~~~~-~~~  550 (789)
                      ++++.|.++.++.|+.++-   .+... +  ++++|+.|.||+|+..++.+-++..+... .........++...- ..-
T Consensus        20 ~~diig~~~~~~~L~~~i~---~~~~p-~--lLl~GP~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i   93 (323)
T 1sxj_B           20 LSDIVGNKETIDRLQQIAK---DGNMP-H--MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQI   93 (323)
T ss_dssp             GGGCCSCTHHHHHHHHHHH---SCCCC-C--EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHH
T ss_pred             HHHHCCCHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf             9993095999999999997---79999-7--9888959998999999999986699777763244110015749999999


Q ss_pred             HHHHH------HCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             88997------389809999346777601310024541598587321047860687145289997388634267984166
Q gi|254781225|r  551 PSLIR------LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW  624 (789)
Q Consensus       551 ~~la~------l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~  624 (789)
                      .+.+.      -...+++++.|.+.-..-....              + .....+.......++.||+.-.+   ...+.
T Consensus        94 ~~~~~~~~~~~~~~~kiiiide~d~~~~~~q~~--------------l-~~~~e~~~~~~~~i~~~~~~~~i---~~~i~  155 (323)
T 1sxj_B           94 KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQA--------------L-RRTMELYSNSTRFAFACNQSNKI---IEPLQ  155 (323)
T ss_dssp             HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHT--------------T-HHHHHHTTTTEEEEEEESCGGGS---CHHHH
T ss_pred             HHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHH--------------H-HHHCCCCCCCEEEEEECCCCCCC---CHHHH
T ss_conf             987652023667764899984111111002214--------------5-54013565321344303640213---46777


Q ss_pred             EEEEEEECCCCC
Q ss_conf             468999658878
Q gi|254781225|r  625 RRYIVIPFDKPI  636 (789)
Q Consensus       625 rR~~iipF~~~~  636 (789)
                      .|...+.|...-
T Consensus       156 sRc~~i~~~~~~  167 (323)
T 1sxj_B          156 SQCAILRYSKLS  167 (323)
T ss_dssp             TTSEEEECCCCC
T ss_pred             HHHHHHHHCCCC
T ss_conf             667676623687


No 42 
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: ATG; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B
Probab=93.38  E-value=0.15  Score=26.53  Aligned_cols=94  Identities=15%  Similarity=0.138  Sum_probs=55.2

Q ss_pred             HCCCHHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC--
Q ss_conf             879999999999999999759-------87433799997078862578999999972330003442676420124555--
Q gi|254781225|r  476 YFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA--  546 (789)
Q Consensus       476 ~~~d~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~--  546 (789)
                      +.|-++..+-+++++-+-|..       .....+-++++|+.|+|||++.+.+.+-+|-.........+++...+...  
T Consensus       206 igGl~~~~~~l~e~v~lpl~~pe~~~~~g~~~p~gvLL~GPpGtGKT~laraiA~e~~~~~~~i~~~~~~s~~~~ese~~  285 (489)
T 3hu3_A          206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN  285 (489)
T ss_dssp             CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHCCCCCHHHH
T ss_conf             24599999999999998710999997579988751688798998815999999998589813763035532236520689


Q ss_pred             CCCCHHHHHHCCCEEEEEECCCC
Q ss_conf             56898899738980999934677
Q gi|254781225|r  547 GKANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       547 ~~~~~~la~l~g~r~~~~~E~~~  569 (789)
                      -..-++.|+....-++++.|.+.
T Consensus       286 lr~~F~~A~~~~p~Ii~iDeiD~  308 (489)
T 3hu3_A          286 LRKAFEEAEKNAPAIIFIDELDA  308 (489)
T ss_dssp             HHHHHHHHHHTCSEEEEEESHHH
T ss_pred             HHHHHHHHHHCCCCCCEEECHHH
T ss_conf             99999999870886100054233


No 43 
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.30  E-value=0.074  Score=28.62  Aligned_cols=140  Identities=12%  Similarity=0.083  Sum_probs=69.4

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC----CCCCCHHHHHHCCCCCCCCC
Q ss_conf             88879999999999999999759874337999970788625789999999723300----03442676420124555568
Q gi|254781225|r  474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY----VINAEASDIMQNRPPEAGKA  549 (789)
Q Consensus       474 ~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~----~~~~~~~~~~~~~~~~~~~~  549 (789)
                      +++.|.++.++.|+.++-.   +...   .++++|+-|.||+|+..++..-++...    ....................
T Consensus        25 ~dlig~~~~~~~L~~~~~~---~~~p---~lll~Gp~G~GKTtla~~lak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (327)
T 1iqp_A           25 DDIVGQEHIVKRLKHYVKT---GSMP---HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVK   98 (327)
T ss_dssp             TTCCSCHHHHHHHHHHHHH---TCCC---EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHC---CCCC---EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHH
T ss_conf             9923969999999999977---9998---698789899999999999999976401477711344545566489999999


Q ss_pred             CHHHH---HHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf             98899---738980999934677760131002454159858732104786068714528999738863426798416646
Q gi|254781225|r  550 NPSLI---RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR  626 (789)
Q Consensus       550 ~~~la---~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR  626 (789)
                      .+...   .-...+++++.|.+....-....++               +...++.-...+++.||+...+.   ..+-+|
T Consensus        99 ~~~~~~~~~~~~~~viiide~~~~~~~~~~~Ll---------------~~le~~~~~~~~i~~~~~~~~i~---~~l~sr  160 (327)
T 1iqp_A           99 EFARTKPIGGASFKIIFLDEADALTQDAQQALR---------------RTMEMFSSNVRFILSCNYSSKII---EPIQSR  160 (327)
T ss_dssp             HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHH---------------HHHHHTTTTEEEEEEESCGGGSC---HHHHHT
T ss_pred             HHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHH---------------HHHHCCCCCEEEEECCCCHHHCC---HHHHCH
T ss_conf             998631236887269998676646576899999---------------98850577514552368631163---678462


Q ss_pred             EEEEECCCCCC
Q ss_conf             89996588788
Q gi|254781225|r  627 YIVIPFDKPIA  637 (789)
Q Consensus       627 ~~iipF~~~~~  637 (789)
                      ..+|.|+..-+
T Consensus       161 ~~~i~~~~~~~  171 (327)
T 1iqp_A          161 CAIFRFRPLRD  171 (327)
T ss_dssp             EEEEECCCCCH
T ss_pred             HHCCCCCCCCH
T ss_conf             32021256777


No 44 
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.11  E-value=0.075  Score=28.55  Aligned_cols=32  Identities=34%  Similarity=0.330  Sum_probs=23.9

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             37999970788625789999999723300034
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN  532 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~  532 (789)
                      ++++++.|+.|+||||+.+.|..-++.+...+
T Consensus         2 k~iI~i~G~pGsGKSTla~~L~~~~~~~~~i~   33 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNIN   33 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEC
T ss_conf             88999989999998999999998589989981


No 45 
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.05  E-value=0.073  Score=28.66  Aligned_cols=14  Identities=14%  Similarity=-0.021  Sum_probs=5.6

Q ss_pred             CHHHHHHHHHHHHC
Q ss_conf             12567899987641
Q gi|254781225|r   75 EKTANTFKDTFEIL   88 (789)
Q Consensus        75 ~~~~~~~~~~~~~l   88 (789)
                      +.+...+.+.+.-.
T Consensus        39 GsGKStildAI~~~   52 (483)
T 3euj_A           39 GAGKSTTMAGFVTA   52 (483)
T ss_dssp             TSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             72299999999999


No 46 
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.04  E-value=0.19  Score=25.95  Aligned_cols=43  Identities=26%  Similarity=0.312  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             99999999975987433799997078862578999999972330
Q gi|254781225|r  485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       485 ~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      .+|.++-.+ .+......++-+.|+.++||||+.+.|...|+..
T Consensus         7 ~~~~~~~~~-~~~~~~~~iIgI~G~~gSGKSTla~~L~~~l~~~   49 (208)
T 3c8u_A            7 LCQGVLERL-DPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQ   49 (208)
T ss_dssp             HHHHHHHHS-CTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             999999975-0349996899988989899999999999997342


No 47 
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.88  E-value=0.16  Score=26.46  Aligned_cols=139  Identities=13%  Similarity=0.169  Sum_probs=71.1

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH-CCCCCCCCC------HHHHHHCCCC-
Q ss_conf             98887999999999999999975987433799997078862578999999972-330003442------6764201245-
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-GNQYVINAE------ASDIMQNRPP-  544 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll-G~~~~~~~~------~~~~~~~~~~-  544 (789)
                      ++++.|.++.++.|..++..     .+....++++|+-|.||+|+...+...+ ++......+      -..+..+... 
T Consensus        15 ~~d~ig~~~~~~~l~~~~~~-----~~~~h~~L~~Gp~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d   89 (373)
T 1jr3_A           15 FADVVGQEHVLTALANGLSL-----GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD   89 (373)
T ss_dssp             TTTSCSCHHHHHHHHHHHHH-----TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSS
T ss_pred             HHHCCCHHHHHHHHHHHHHC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCC
T ss_conf             99805969999999999976-----9977147657999988999999999986787788767676535899997589971


Q ss_pred             --------C--CCCCCHHHH-----HHC-CCEEEEEECCCCCCCCCC-CEEEEEECCCEEEEEECCCCCCEEEECCEEEE
Q ss_conf             --------5--556898899-----738-980999934677760131-00245415985873210478606871452899
Q gi|254781225|r  545 --------E--AGKANPSLI-----RLM-GSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPF  607 (789)
Q Consensus       545 --------~--~~~~~~~la-----~l~-g~r~~~~~E~~~~~~~~~-~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~  607 (789)
                              .  ....+.-+.     ... +.+++++.|.+.-..-.. +.+|.|                .+..+...++
T Consensus        90 ~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiide~d~l~~~a~n~Llk~l----------------Eep~~~~~~i  153 (373)
T 1jr3_A           90 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL----------------EEPPEHVKFL  153 (373)
T ss_dssp             CEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHH----------------HSCCSSEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH----------------HCCCCCEEEE
T ss_conf             798522102889999999999854665799769998683638999999999998----------------5788673898


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEECCCC
Q ss_conf             9738863426798416646899965887
Q gi|254781225|r  608 IVPNKHLFVRNPDDAWWRRYIVIPFDKP  635 (789)
Q Consensus       608 ~~~N~~P~~~~~d~~~~rR~~iipF~~~  635 (789)
                      ++||..-.+   ...+-.|...|.|...
T Consensus       154 l~t~~~~~~---~~ti~SRc~~i~~~~~  178 (373)
T 1jr3_A          154 LATTDPQKL---PVTILSRCLQFHLKAL  178 (373)
T ss_dssp             EEESCGGGS---CHHHHTTSEEEECCCC
T ss_pred             EECCCHHHC---HHHHHHHHHHCCCCCC
T ss_conf             844875654---2899965431011346


No 48 
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.74  E-value=0.11  Score=27.59  Aligned_cols=32  Identities=16%  Similarity=0.257  Sum_probs=26.1

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             33799997078862578999999972330003
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI  531 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~  531 (789)
                      .+..+.++|+.|+||||+.++|...+|...+.
T Consensus        10 pk~II~ItG~~GSGKsTva~~L~e~~~~~~~~   41 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCA   41 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf             83899988979999999999999972998469


No 49 
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.61  E-value=0.083  Score=28.29  Aligned_cols=29  Identities=21%  Similarity=0.440  Sum_probs=25.7

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             37999970788625789999999723300
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      ++++++.|+-|+||||+.+.|...+|...
T Consensus         3 ~~iI~l~G~~GsGKsTvA~~La~~l~~~~   31 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPW   31 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             73999989999998999999999848997


No 50 
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.37  E-value=0.069  Score=28.81  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=22.5

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             799997078862578999999972330
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      +-++++|+.|.||||++++|..++...
T Consensus         2 khi~I~G~~GsGKTTL~~~l~~~l~~~   28 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             899998999822999999998661699


No 51 
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Aeropyrum pernix K1}
Probab=92.34  E-value=0.078  Score=28.45  Aligned_cols=30  Identities=20%  Similarity=0.376  Sum_probs=23.1

Q ss_pred             CCC-EEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             433-799997078862578999999972330
Q gi|254781225|r  499 KAQ-RFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       499 ~~~-~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      -++ ..++++|..|+||||+.+.|...|+..
T Consensus        10 ~~kg~iI~itG~~GSGKSTlAk~La~~L~~~   40 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE   40 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             5899599989999999999999999998423


No 52 
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} SCOP: c.37.1.25
Probab=92.23  E-value=0.11  Score=27.55  Aligned_cols=28  Identities=29%  Similarity=0.418  Sum_probs=24.6

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             3799997078862578999999972330
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      .+++++.|+-|+||||+.+.|+.-+|..
T Consensus         2 ~klIii~G~~GsGKTTla~~La~~l~~~   29 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNS   29 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             9589998999989899999999980998


No 53 
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.11  E-value=0.39  Score=23.84  Aligned_cols=64  Identities=20%  Similarity=0.239  Sum_probs=44.2

Q ss_pred             CCCHHHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             79999999999999999759-87433799997078862578999999972330003442676420
Q gi|254781225|r  477 FESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ  540 (789)
Q Consensus       477 ~~d~e~~~~l~~~~g~~l~g-~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~  540 (789)
                      .+|++-..-+-+-++-.|.. ..+...++.|.|.=|.||+||..-+.+-+|-....++|+..+.+
T Consensus         8 l~~e~~t~~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtf~r~i~~~lg~~~~V~SPTF~l~~   72 (158)
T 1htw_A            8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVE   72 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEH
T ss_conf             90999999999999999875168998499998898688999999999982766667898334100


No 54 
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.08  E-value=0.4  Score=23.74  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=23.3

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             3379999707886257899999997233
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ...++-+.|+.++|||||.++|+.+|+.
T Consensus        79 ~P~IIGIaG~sgsGKSTla~~L~~lL~~  106 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLSR  106 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             9689999899988799999999999710


No 55 
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=92.07  E-value=0.14  Score=26.83  Aligned_cols=17  Identities=0%  Similarity=-0.117  Sum_probs=8.0

Q ss_pred             CCCCHHHHHHHHHHHHC
Q ss_conf             88625789999999723
Q gi|254781225|r  510 GGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       510 G~nGKSt~~~~l~~llG  526 (789)
                      ..|=+.||-.+...++.
T Consensus       302 t~~~~~vf~~v~d~I~~  318 (327)
T 3ohm_A          302 TENIRFVFAAVKDTILQ  318 (327)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
T ss_conf             68999999999999999


No 56 
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, cytoplasm, hydrolase, nucleotide-B protease, serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.02  E-value=0.46  Score=23.33  Aligned_cols=198  Identities=17%  Similarity=0.196  Sum_probs=98.5

Q ss_pred             HHHHHH-HCCCHHHHHHHHHHHH-HHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC-CCC----CHHHHHHCC
Q ss_conf             999988-8799999999999999-997598743379999707886257899999997233000-344----267642012
Q gi|254781225|r  470 LDLVSG-YFESEEVMDYFTRCVG-MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INA----EASDIMQNR  542 (789)
Q Consensus       470 ~~~l~~-~~~d~e~~~~l~~~~g-~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~-~~~----~~~~~~~~~  542 (789)
                      .+-|++ .+|=+++.+.+.++++ ..|.+..+-+ .+.++|+.+-||+++...+...+|.... .+.    +...+.+.+
T Consensus        76 ~~~Ld~~hyGl~~vKerIle~lav~~l~~~~~~~-il~l~GPPGvGKTs~ar~ia~~l~~~f~~islgG~~d~~~lrGh~  154 (543)
T 3m6a_A           76 GRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGP-ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR  154 (543)
T ss_dssp             GGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSC-EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC
T ss_conf             9887876437389999999999999864667778-178862876346799998887608981698566455321347887


Q ss_pred             CCCCCCCC-H---HHHHHC-CCEEEEEECCCCCCCC-----CCCEEEEEECCCEEEEEECCCCCCE--EEECCE-EEEEE
Q ss_conf             45555689-8---899738-9809999346777601-----3100245415985873210478606--871452-89997
Q gi|254781225|r  543 PPEAGKAN-P---SLIRLM-GSRIVIISETNENDEI-----NAAKIKQMTGGDCMTARLNYGNTYS--ESPASF-TPFIV  609 (789)
Q Consensus       543 ~~~~~~~~-~---~la~l~-g~r~~~~~E~~~~~~~-----~~~~~K~ltggD~i~ar~~~~~~~~--~~~p~~-~~~~~  609 (789)
                      ..-.|+.. .   .+.+.. .-.+.+.+|.++-..-     ..+++ .++  |+-+. ..|.+.+.  .|.-.. ..++.
T Consensus       155 ~ty~Gs~pg~I~q~l~~~~~~nPVi~lDEIdK~~~~~~gd~~~aLL-~vL--Dp~qn-~~f~D~y~~~~~dls~vlfi~T  230 (543)
T 3m6a_A          155 RTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAML-EVL--DPEQN-SSFSDHYIEETFDLSKVLFIAT  230 (543)
T ss_dssp             ---------CHHHHHHTTCSSSEEEEEEESSSCC---------CCG-GGT--CTTTT-TBCCCSSSCCCCBCSSCEEEEE
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHH-HHC--CCCCC-CCCCCCCCCCCCCCCCEEEEEE
T ss_conf             7756886507999998628888436227555557687888888755-540--76567-6664643368988471799973


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHH-HHHHHHHHHHHHHCCCC---CCCCH-HHHHHHH
Q ss_conf             3886342679841664689996588788878783342201204479-99999999999987889---88788-9999999
Q gi|254781225|r  610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA-KKWFLKGVKAYISKGLD---VDIPE-VCLKAKE  684 (789)
Q Consensus       610 ~N~~P~~~~~d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i-~~w~l~g~~~~~~~g~~---~~~p~-~v~~a~~  684 (789)
                      +|.+.   .-+.++..|+.+|+|.....            .|+..| .++++.  +...++|++   +..++ ++....+
T Consensus       231 aN~~~---~I~~~L~dR~evI~~~~yt~------------~Ek~~Ia~~~LlP--k~~~~~gl~~~~i~i~d~~l~~II~  293 (543)
T 3m6a_A          231 ANNLA---TIPGPLRDRMEIINIAGYTE------------IEKLEIVKDHLLP--KQIKEHGLKKSNLQLRDQAILDIIR  293 (543)
T ss_dssp             CSSTT---TSCHHHHHHEEEEECCCCCH------------HHHHHHHHHTHHH--HHHHHTTCCGGGCEECHHHHHHHHH
T ss_pred             CCCCC---CCCHHHHCCCEEEECCCCCH------------HHHHHHHHHHCCH--HHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             69832---17855750745770698777------------7888889862179--9999848565567555899999999


Q ss_pred             HHHHH
Q ss_conf             99984
Q gi|254781225|r  685 EERQG  689 (789)
Q Consensus       685 ~y~~~  689 (789)
                      .|-.+
T Consensus       294 ~YTrE  298 (543)
T 3m6a_A          294 YYTRE  298 (543)
T ss_dssp             HHCCC
T ss_pred             HHCCC
T ss_conf             85566


No 57 
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=92.01  E-value=0.067  Score=28.91  Aligned_cols=139  Identities=14%  Similarity=0.074  Sum_probs=68.7

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCHHHHHHCCCCCCCC-CCH
Q ss_conf             8887999999999999999975987433799997078862578999999972330003-44267642012455556-898
Q gi|254781225|r  474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI-NAEASDIMQNRPPEAGK-ANP  551 (789)
Q Consensus       474 ~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~-~~~~~~~~~~~~~~~~~-~~~  551 (789)
                      .++.|.++.++.|+.++-   .+... +  ++++|+.|.||+|+...+.+-++..... ......-...++..... ...
T Consensus        17 ~diig~~~~~~~l~~~i~---~~~~~-~--~L~~Gp~G~GKttla~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVE---RKNIP-H--LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK   90 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTT---TTCCC-C--EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHH
T ss_pred             HHHCCHHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             991395999999999997---79998-7--99889799999999999999734456787647753567776378999999


Q ss_pred             HHHH---H--CCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf             8997---3--8980999934677760131002454159858732104786068714528999738863426798416646
Q gi|254781225|r  552 SLIR---L--MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR  626 (789)
Q Consensus       552 ~la~---l--~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR  626 (789)
                      ..+.   .  ...+++++.|.+.-..-....+               .+...+......+++.||....   ....+-+|
T Consensus        91 ~~~~~~~~~~~~~~~iiide~d~l~~~~q~~l---------------l~~le~~~~~~~~i~~~~~~~~---~~~~i~sr  152 (319)
T 2chq_A           91 EFARTAPIGGAPFKIIFLDEADALTADAQAAL---------------RRTMEMYSKSCRFILSCNYVSR---IIEPIQSR  152 (319)
T ss_dssp             HHHHSCCSSSCCCEEEEEETGGGSCHHHHHTT---------------GGGTSSSSSSEEEEEEESCGGG---SCHHHHTT
T ss_pred             HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHH---------------HHHHHCCCCCCEECCCCCCCCC---CCHHHHCC
T ss_conf             98874440699648999725331679999999---------------8776127865111025685012---64767473


Q ss_pred             EEEEECCCCC
Q ss_conf             8999658878
Q gi|254781225|r  627 YIVIPFDKPI  636 (789)
Q Consensus       627 ~~iipF~~~~  636 (789)
                      ..++.|+..-
T Consensus       153 ~~~i~~~~~~  162 (319)
T 2chq_A          153 CAVFRFKPVP  162 (319)
T ss_dssp             CEEEECCCCC
T ss_pred             HHEEECCCCC
T ss_conf             0133147899


No 58 
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.93  E-value=0.12  Score=27.21  Aligned_cols=28  Identities=29%  Similarity=0.363  Sum_probs=23.1

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             3799997078862578999999972330
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      ...+-+.|+.++|||||.+.|...||..
T Consensus        22 P~IIgItG~~gSGKSTla~~L~~~l~~~   49 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLGQN   49 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             1899988989885999999999996612


No 59 
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A
Probab=91.77  E-value=0.066  Score=28.93  Aligned_cols=27  Identities=37%  Similarity=0.564  Sum_probs=18.6

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             337999970788625789999999723
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ..-++.++|+.|+||||++++|..+.-
T Consensus        29 ~Ge~~~iiGpsGsGKSTLl~~i~gl~~   55 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             998999999999849999999971789


No 60 
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.72  E-value=0.2  Score=25.77  Aligned_cols=32  Identities=28%  Similarity=0.312  Sum_probs=25.5

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             87433799997078862578999999972330
Q gi|254781225|r  497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      .......+-+.|+.++||||+.+.|...||..
T Consensus        21 ~~~kP~IIgI~G~~gSGKSTla~~L~~~l~~~   52 (245)
T 2jeo_A           21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             89995899988989888999999999985615


No 61 
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl}
Probab=91.68  E-value=0.19  Score=25.93  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=25.4

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             433799997078862578999999972330
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      ....++++.|+-++||||+.+.|...+|-.
T Consensus         3 ~~p~~I~i~G~~GsGKTTla~~La~~~~~~   32 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLP   32 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             899899998689999799999999996993


No 62 
>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B}
Probab=91.56  E-value=0.49  Score=23.13  Aligned_cols=88  Identities=13%  Similarity=0.103  Sum_probs=46.2

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC--CCCHHHHHHCCCCC
Q ss_conf             8999998887999999999999999975987433799997078862578999999972330003--44267642012455
Q gi|254781225|r  468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI--NAEASDIMQNRPPE  545 (789)
Q Consensus       468 ~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~--~~~~~~~~~~~~~~  545 (789)
                      .|+.|+.. -++++.+..++.++-    +..  ...+++||+.|.|||.++..+.+-+......  ..+......     
T Consensus        26 tfdnF~~~-~~N~~a~~~l~~~~~----~~~--~~~l~l~Gp~GsGKThL~~ai~~~~~~~~~~~~~~~~~~~~~-----   93 (242)
T 3bos_A           26 TFTSYYPA-AGNDELIGALKSAAS----GDG--VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS-----   93 (242)
T ss_dssp             STTTSCC---CCHHHHHHHHHHHH----TCS--CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG-----
T ss_pred             CHHCCCCC-CCHHHHHHHHHHHHH----CCC--CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_conf             46501415-759999999998873----899--885988899999899999999998542113444448888764-----


Q ss_pred             CCCCCHHHHHHCCCEEEEEECCCC
Q ss_conf             556898899738980999934677
Q gi|254781225|r  546 AGKANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       546 ~~~~~~~la~l~g~r~~~~~E~~~  569 (789)
                        .....+..+....++++.|.+.
T Consensus        94 --~~~~~~~~~~~~~~l~iDdi~~  115 (242)
T 3bos_A           94 --ISTALLEGLEQFDLICIDDVDA  115 (242)
T ss_dssp             --SCGGGGTTGGGSSEEEEETGGG
T ss_pred             --HHHHHHHHHHHCCCCEEHHHHH
T ss_conf             --1899999987458712301776


No 63 
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.49  E-value=0.14  Score=26.73  Aligned_cols=29  Identities=17%  Similarity=0.279  Sum_probs=24.6

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             79999707886257899999997233000
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      +.++++|..|+||||+.+.|...|+....
T Consensus         6 ~~I~l~G~~GsGKSTia~~La~~L~~~~~   34 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLVCHGI   34 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             79998899998999999999999744588


No 64 
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.44  E-value=0.17  Score=26.27  Aligned_cols=71  Identities=11%  Similarity=0.096  Sum_probs=42.8

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC--CCCCCHHHHHHCCCEEEEEECCCC
Q ss_conf             43379999707886257899999997233000344267642012455--556898899738980999934677
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE--AGKANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~--~~~~~~~la~l~g~r~~~~~E~~~  569 (789)
                      ...+-++++|+-|.|||++.+.+..-+|-.........+.+...+..  .-..-++.|+-...-++++.|.+.
T Consensus        42 ~~~~giLL~GppGtGKT~la~aia~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~f~~a~~~~p~il~~d~~~~  114 (274)
T 2x8a_A           42 VTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDA  114 (274)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf             9887268878999886289999999827871897647833403661679999999987762995898501033


No 65 
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1
Probab=91.34  E-value=0.22  Score=25.41  Aligned_cols=52  Identities=21%  Similarity=0.210  Sum_probs=37.4

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             999988879999999999999999759874337999970788625789999999723300
Q gi|254781225|r  470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       470 ~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      .+++..=+-++++..|++.++-        ....+++.|+.++||||+++.+...+....
T Consensus       237 ~dLv~~G~~~~~~~~~l~~~v~--------~~~~ili~G~tgSGKTT~L~all~~i~~~~  288 (511)
T 2oap_1          237 IDLIEKGTVPSGVLAYLWLAIE--------HKFSAIVVGETASGKTTTLNAIMMFIPPDA  288 (511)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHH--------TTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred             HHHHHCCCCHHHHHHHHHHHHH--------CCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             9997658982999999999986--------695599989998988999999999645405


No 66 
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.29  E-value=0.17  Score=26.21  Aligned_cols=25  Identities=8%  Similarity=0.038  Sum_probs=10.6

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf             99999999999999997598743379999707
Q gi|254781225|r  478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV  509 (789)
Q Consensus       478 ~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~  509 (789)
                      |...+++.++.+..       .-..++++.|-
T Consensus       189 p~~~vi~~~~~~~~-------~G~~Ii~~sgR  213 (301)
T 1ltq_A          189 INPMVVELSKMYAL-------MGYQIVVVSGR  213 (301)
T ss_dssp             BCHHHHHHHHHHHH-------TTCEEEEEECS
T ss_pred             CCHHHHHHHHHHHH-------CCCEEEEEECC
T ss_conf             76789999999985-------79869999377


No 67 
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.26  E-value=0.28  Score=24.82  Aligned_cols=18  Identities=28%  Similarity=0.147  Sum_probs=10.8

Q ss_pred             CCCEEEECCCCCCCCCCEE
Q ss_conf             6843880477688887457
Q gi|254781225|r  131 CGQYFVAYNIHPKTKKEYT  149 (789)
Q Consensus       131 ~G~q~V~~gshp~Tg~~Y~  149 (789)
                      ..+.+++.| .|+|||.++
T Consensus       163 ~~~~~lI~G-gpGTGKTtt  180 (608)
T 1w36_D          163 TRRISVISG-GPGTGKTTT  180 (608)
T ss_dssp             TBSEEEEEC-CTTSTHHHH
T ss_pred             CCCEEEEEE-CCCCHHHHH
T ss_conf             099089993-899729999


No 68 
>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.23  E-value=0.55  Score=22.83  Aligned_cols=260  Identities=13%  Similarity=0.085  Sum_probs=112.5

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCEEEE--EEECCCCCHHHHHHHHHHHHCCCC--------C-----CCC-C-HHH---
Q ss_conf             9999999999999999759874337999--970788625789999999723300--------0-----344-2-676---
Q gi|254781225|r  478 ESEEVMDYFTRCVGMALLGGNKAQRFIH--IRGVGGSGKSTLMNLIKYAFGNQY--------V-----INA-E-ASD---  537 (789)
Q Consensus       478 ~d~e~~~~l~~~~g~~l~g~~~~~~~~~--~~G~G~nGKSt~~~~l~~llG~~~--------~-----~~~-~-~~~---  537 (789)
                      -|.++.+....+....+.|.......++  ++|+.|.|||++.+.+...+....        .     ... + ...   
T Consensus        27 Re~ei~~l~~~~~~~~~~g~~~~~~~~i~~i~GppGTGKT~~~~~v~~~l~~~~~~~~~~i~~v~in~~~~~t~~~~~~~  106 (412)
T 1w5s_A           27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSL  106 (412)
T ss_dssp             SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHH
T ss_conf             69999999999999997499999823898466899988999999999999864355568704999324136759999998


Q ss_pred             -HHH--CCCCCCCCCCHHHH-------HHCCC-EEEEEECCCCCCCCC---CCEEEEEECCCEEEEEECCCCCCEEEECC
Q ss_conf             -420--12455556898899-------73898-099993467776013---10024541598587321047860687145
Q gi|254781225|r  538 -IMQ--NRPPEAGKANPSLI-------RLMGS-RIVIISETNENDEIN---AAKIKQMTGGDCMTARLNYGNTYSESPAS  603 (789)
Q Consensus       538 -~~~--~~~~~~~~~~~~la-------~l~g~-r~~~~~E~~~~~~~~---~~~~K~ltggD~i~ar~~~~~~~~~~~p~  603 (789)
                       +.+  ...+..|.+..++.       .-.+. .+++++|.+.=....   ...+-.++     .+.... .+. .....
T Consensus       107 i~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~viilDEiD~L~~~~~~~~~~l~~L~-----~~~e~l-~~~-~~~~~  179 (412)
T 1w5s_A          107 IVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLL-----RVHEEI-PSR-DGVNR  179 (412)
T ss_dssp             HHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHH-----THHHHS-CCT-TSCCB
T ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCHHHHHHHH-----HHHHHC-CCC-CCCCC
T ss_conf             72002554786673189999999999986068754899730023024442056888999-----998741-021-25662


Q ss_pred             EEEEEECCCCCCCCCCCC---CEEEE-EEEEECCCCCCC--------------CCCCHHHH-------HCCCCH--HHHH
Q ss_conf             289997388634267984---16646-899965887888--------------78783342-------201204--4799
Q gi|254781225|r  604 FTPFIVPNKHLFVRNPDD---AWWRR-YIVIPFDKPIAN--------------RDASFAQK-------LETKYT--LEAK  656 (789)
Q Consensus       604 ~~~~~~~N~~P~~~~~d~---~~~rR-~~iipF~~~~~~--------------~d~~~~~~-------~~~~e~--~~i~  656 (789)
                      ..+++.+|.+......+.   .+-.| -..|.|+.-=.+              .+..+.+.       ....+.  .|..
T Consensus       180 ~~~I~i~n~~~~~~~l~~~~~~~~sr~~~~i~F~pY~~~el~~IL~~R~~~~~~~~~~~~~al~~ia~~~~~~~~~~Gd~  259 (412)
T 1w5s_A          180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSA  259 (412)
T ss_dssp             EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred             EEEEEECCCHHHHHHHHHHCCCHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCH
T ss_conf             26887247657888888636420012663675699999999999999999734466789899999999987633789999


Q ss_pred             HHHHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHC---CHHH-------HHHHHHEE--ECCCCEECHHHHHHHHHH
Q ss_conf             99999999----99987889887889999999999842---6388-------88754326--268841117999999999
Q gi|254781225|r  657 KWFLKGVK----AYISKGLDVDIPEVCLKAKEEERQGT---DTYQ-------AWIDDCCD--IGENLWEESHSLAKSYSE  720 (789)
Q Consensus       657 ~w~l~g~~----~~~~~g~~~~~p~~v~~a~~~y~~~~---D~v~-------~fi~e~ce--~~~~~~~~~~~l~~~y~~  720 (789)
                      .-++.-|.    ....+|-.....+.|..|.++.....   +.+.       ..+...+.  ..........++|+.|..
T Consensus       260 R~ai~ll~~A~~~A~~~~~~~It~~~v~~A~~~~~~~~~~~~~~~~l~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~y~~  339 (412)
T 1w5s_A          260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYED  339 (412)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHH
T ss_conf             99999999999999980899849999999999976521157887249998999999999986469974009999999999


Q ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             99850466755545256899998635
Q gi|254781225|r  721 YREQELNYDRKRISTRTVTLNLKQKG  746 (789)
Q Consensus       721 ~~~~~~~~~~~~~s~~~~~~~l~~~g  746 (789)
                      .|.+..  +.++++.+.|..-|.++.
T Consensus       340 ~~~~~~--~~~~~~~~~~~~~l~~Le  363 (412)
T 1w5s_A          340 ASLTMY--NVKPRGYTQYHIYLKHLT  363 (412)
T ss_dssp             HHHHHS--CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHC--CCCCCCHHHHHHHHHHHH
T ss_conf             998753--788742989999999999


No 69 
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.10  E-value=0.1  Score=27.66  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             9999707886257899999997233
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ++.+.|+-|+||||++++|..++..
T Consensus        26 ~~~iiGpsGsGKSTllr~i~Gl~~p   50 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             9999979998199999999729999


No 70 
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 2pz3_A* 2pz2_A* 1as0_A* 1as2_A* 1as3_A* 1gil_A* ...
Probab=91.02  E-value=0.16  Score=26.36  Aligned_cols=16  Identities=0%  Similarity=-0.130  Sum_probs=7.3

Q ss_pred             CCCHHHHHHHHHHHHC
Q ss_conf             8625789999999723
Q gi|254781225|r  511 GSGKSTLMNLIKYAFG  526 (789)
Q Consensus       511 ~nGKSt~~~~l~~llG  526 (789)
                      .|=+.||-.+-..++-
T Consensus       329 ~~~~~vf~~v~d~Il~  344 (353)
T 1cip_A          329 KNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             8999999999999999


No 71 
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.01  E-value=0.12  Score=27.10  Aligned_cols=30  Identities=30%  Similarity=0.372  Sum_probs=25.5

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             379999707886257899999997233000
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      ..++++.|+.|+||||+.+.|...+|-..+
T Consensus         9 G~iI~i~G~~GsGKTT~a~~La~~lg~~~~   38 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANLPGVPKV   38 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             818999899999889999999999699989


No 72 
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.92  E-value=0.59  Score=22.60  Aligned_cols=161  Identities=14%  Similarity=0.169  Sum_probs=92.4

Q ss_pred             CHHHHCCEECCCCCCCCCC-----HHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCCC---CCCEEEEEEECCCCCHHHH
Q ss_conf             8655010013788887579-----4789999988-87999999999999999975987---4337999970788625789
Q gi|254781225|r  447 TKELYITKSTGTPFVEGEP-----SQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTL  517 (789)
Q Consensus       447 ~~~~~~t~~~~~~y~~~a~-----~p~~~~~l~~-~~~d~e~~~~l~~~~g~~l~g~~---~~~~~~~~~G~G~nGKSt~  517 (789)
                      +-+..+...++++-..-..     --...+.|.+ ++|-++.++-+-+.+--+-.|-.   +.-.-|++.||.|.||+-+
T Consensus       425 d~~~v~~~~tgip~~~l~~~~~~~l~~l~~~l~~~viGQ~~Ai~~v~~~i~~~~agl~~~~rP~~s~Lf~GPtGvGKTel  504 (758)
T 1r6b_X          425 DIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEV  504 (758)
T ss_dssp             HHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf             69999999958985101222689999889999857128688999999999999728899888652278867887568999


Q ss_pred             HHHHHHHHCCCCCCCCCHHHHHHCC--CCCCCCC-----------CHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECC
Q ss_conf             9999997233000344267642012--4555568-----------98899738980999934677760131002454159
Q gi|254781225|r  518 MNLIKYAFGNQYVINAEASDIMQNR--PPEAGKA-----------NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG  584 (789)
Q Consensus       518 ~~~l~~llG~~~~~~~~~~~~~~~~--~~~~~~~-----------~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltgg  584 (789)
                      ...|...++..- ...+.+.+++.-  ..-.|.+           -.+..+-..-.++.++|.++-..---..|-++..+
T Consensus       505 Ak~LA~~l~~~l-ir~Dmsey~e~~svs~LiGappgyvG~~~gg~Lt~~vr~~p~sVvllDEiEKAh~~V~~~lLqild~  583 (758)
T 1r6b_X          505 TVQLSKALGIEL-LRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDN  583 (758)
T ss_dssp             HHHHHHHHTCEE-EEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCE-EEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             999999723665-9831422356217888718997654534688300877627566554455543546788776766067


Q ss_pred             CEEEEEECCCCCCEEEECCEEEEEECCC
Q ss_conf             8587321047860687145289997388
Q gi|254781225|r  585 DCMTARLNYGNTYSESPASFTPFIVPNK  612 (789)
Q Consensus       585 D~i~ar~~~~~~~~~~~p~~~~~~~~N~  612 (789)
                      ..++-..  ++. +.|..+ .++|.||-
T Consensus       584 G~ltd~~--Gr~-vdf~n~-iiI~TSNi  607 (758)
T 1r6b_X          584 GTLTDNN--GRK-ADFRNV-VLVMTTNA  607 (758)
T ss_dssp             SEEEETT--TEE-EECTTE-EEEEEECS
T ss_pred             CCCCCCC--CCC-CCCCCC-EEEECCCH
T ss_conf             6120799--955-147562-79863312


No 73 
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.76  E-value=0.058  Score=29.31  Aligned_cols=140  Identities=11%  Similarity=0.079  Sum_probs=68.3

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC----------CCCCC-HHH----
Q ss_conf             988879999999999999999759874337999970788625789999999723300----------03442-676----
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY----------VINAE-ASD----  537 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~----------~~~~~-~~~----  537 (789)
                      ++++.|.++.++.|+.++-    .....+  ++++|+-|.||+|+..++.+-++...          .+... ...    
T Consensus        36 ~~divg~~~~~~~L~~~i~----~~~~~~--lLl~Gp~G~GKTt~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (353)
T 1sxj_D           36 LDEVTAQDHAVTVLKKTLK----SANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREK  109 (353)
T ss_dssp             TTTCCSCCTTHHHHHHHTT----CTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTH
T ss_pred             HHHHCCCHHHHHHHHHHHH----CCCCCE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHH
T ss_conf             9991396999999999997----699875--9988959998999999999844787544544012110134573077889


Q ss_pred             HHH-CCCCCCCCCCHHHH--HHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCC
Q ss_conf             420-12455556898899--738980999934677760131002454159858732104786068714528999738863
Q gi|254781225|r  538 IMQ-NRPPEAGKANPSLI--RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL  614 (789)
Q Consensus       538 ~~~-~~~~~~~~~~~~la--~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P  614 (789)
                      +.. .+..........+-  .....+++++.|.+.-..-....+              . +...+......++++||+.-
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~kviiiDe~d~l~~~~~~~l--------------~-~~~e~~~~~~~~i~~~~~~~  174 (353)
T 1sxj_D          110 VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSAL--------------R-RTMETYSGVTRFCLICNYVT  174 (353)
T ss_dssp             HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHH--------------H-HHHHHTTTTEEEEEEESCGG
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHH--------------H-HHCCCCCCCCEEEECCCCCC
T ss_conf             99998774422356676504667725999967030689999998--------------7-52036874322322147621


Q ss_pred             CCCCCCCCEEEEEEEEECCCCC
Q ss_conf             4267984166468999658878
Q gi|254781225|r  615 FVRNPDDAWWRRYIVIPFDKPI  636 (789)
Q Consensus       615 ~~~~~d~~~~rR~~iipF~~~~  636 (789)
                      .+   ...+-+|..+|.|+..-
T Consensus       175 ~i---~~~i~sr~~~i~f~~~~  193 (353)
T 1sxj_D          175 RI---IDPLASQCSKFRFKALD  193 (353)
T ss_dssp             GS---CHHHHHHSEEEECCCCC
T ss_pred             CC---CHHHHCCCHHHHCCCCC
T ss_conf             06---73652220122026788


No 74 
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.53  E-value=0.22  Score=25.46  Aligned_cols=31  Identities=19%  Similarity=0.254  Sum_probs=25.8

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             3799997078862578999999972330003
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI  531 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~  531 (789)
                      -+++++.|+-|+||||...+|..-+|-...+
T Consensus         4 ~k~Ivl~G~PGSGK~T~a~~Lae~~g~~~is   34 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS   34 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf             8889998899998799999999986990763


No 75 
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=90.43  E-value=0.35  Score=24.12  Aligned_cols=80  Identities=20%  Similarity=0.173  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf             79999999999999999759874337999970788625789999999723300034426764201245555689889973
Q gi|254781225|r  477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL  556 (789)
Q Consensus       477 ~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l  556 (789)
                      +|+.. ..-+++.++-. ......+.=+++.|..+.|||+++|.|   +|.......+....+....       ......
T Consensus        17 ~p~~~-~~~~~~~l~~l-~~~~~~~l~I~lvG~tg~GKSSliN~l---lg~~~~~v~~~~~~T~~~~-------~~~~~~   84 (270)
T 1h65_A           17 FAPAT-QTKLLELLGNL-KQEDVNSLTILVMGKGGVGKSSTVNSI---IGERVVSISPFQSEGPRPV-------MVSRSR   84 (270)
T ss_dssp             SCHHH-HHHHHHHHHHH-HHTTCCEEEEEEEESTTSSHHHHHHHH---HTSCCSCCCSSSCCCSSCE-------EEEEEE
T ss_pred             CHHHH-HHHHHHHHHHH-HHCCCCCEEEEEECCCCCCHHHHHHHH---HCCCEEEEECCCCCEEEEE-------EEEEEE
T ss_conf             44999-99999999998-745788508999898996399999998---3997668705798425589-------999998


Q ss_pred             CCCEEEEEECCC
Q ss_conf             898099993467
Q gi|254781225|r  557 MGSRIVIISETN  568 (789)
Q Consensus       557 ~g~r~~~~~E~~  568 (789)
                      .|.++.+++-|.
T Consensus        85 ~g~~i~vIDTPG   96 (270)
T 1h65_A           85 AGFTLNIIDTPG   96 (270)
T ss_dssp             TTEEEEEEECCC
T ss_pred             CCEEEEEEECCC
T ss_conf             997899986777


No 76 
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.43  E-value=0.24  Score=25.26  Aligned_cols=27  Identities=33%  Similarity=0.516  Sum_probs=23.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             799997078862578999999972330
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      +++++.|+-|+||||+.+.|...|+..
T Consensus         2 kiivi~G~~GsGKsT~~~~L~~~l~~~   28 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             299998999979899999999999875


No 77 
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.40  E-value=0.16  Score=26.37  Aligned_cols=29  Identities=28%  Similarity=0.424  Sum_probs=24.2

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             37999970788625789999999723300
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      .+-+++.|+.|.||||+.++|..-||-..
T Consensus         4 ~k~Iil~G~~GsGKSTv~k~La~~lg~~~   32 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF   32 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             88399989999988999999999949986


No 78 
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.24  E-value=0.59  Score=22.61  Aligned_cols=51  Identities=14%  Similarity=0.070  Sum_probs=35.3

Q ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             88879999999999999999759874337999970788625789999999723
Q gi|254781225|r  474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       474 ~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      +++.+-++.++-+-..+-.++.+....  .++++|+.|.||+|+...+.+-+.
T Consensus        20 ~~~~~re~~~~~l~~~l~~~i~~~~~~--~~li~GppG~GKTtlar~v~~~L~   70 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKNEVKF--SNLFLGLTGTGKTFVSKYIFNEIE   70 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTTCCCC--EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             347986999999999999997099986--089987998829999999999987


No 79 
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A*
Probab=90.18  E-value=0.23  Score=25.34  Aligned_cols=27  Identities=19%  Similarity=0.135  Sum_probs=23.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             999970788625789999999723300
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      ++++.|+-|+||||+...|..-||-..
T Consensus         3 iI~i~G~~GsGKSTva~~La~~L~~~~   29 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYPI   29 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             999978999999999999999969780


No 80 
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.13  E-value=0.28  Score=24.72  Aligned_cols=29  Identities=34%  Similarity=0.568  Sum_probs=25.4

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             37999970788625789999999723300
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      +-+.+++|+-|+|||++++.|..+|+..+
T Consensus        26 ~g~~~I~G~NGsGKSsildAi~~~l~g~~   54 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLGGLS   54 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf             99579999999972147677786416420


No 81 
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C*
Probab=89.98  E-value=0.3  Score=24.56  Aligned_cols=16  Identities=0%  Similarity=-0.172  Sum_probs=8.1

Q ss_pred             CCCHHHHHHHHHHHHC
Q ss_conf             8625789999999723
Q gi|254781225|r  511 GSGKSTLMNLIKYAFG  526 (789)
Q Consensus       511 ~nGKSt~~~~l~~llG  526 (789)
                      .|=+.+|-.+-..++.
T Consensus       370 ~~i~~vf~~V~d~Il~  385 (402)
T 1azs_C          370 ENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             8999999999999999


No 82 
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.95  E-value=0.2  Score=25.75  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=26.3

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             43379999707886257899999997233000
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      ...+++++.|+.+.||||+.+.|..-++....
T Consensus        18 ~~gkiivi~GpsGsGK~Tl~~~L~~~~~~~~~   49 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIPNLHF   49 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHSTTCEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             79808999898988999999999966899717


No 83 
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.88  E-value=0.2  Score=25.77  Aligned_cols=72  Identities=11%  Similarity=0.071  Sum_probs=42.8

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC--CCCCHHHHHHCCCEEEEEECCCC
Q ss_conf             7433799997078862578999999972330003442676420124555--56898899738980999934677
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA--GKANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~--~~~~~~la~l~g~r~~~~~E~~~  569 (789)
                      .....-+++||+.++||+.+...+..-+|-.........++....+.+.  -..-|+.|+...--+++++|.+.
T Consensus       508 ~~~~~giLl~GPpGtGKT~la~a~A~e~~~~fi~v~~~~l~~~~vGese~~ir~~F~~Ar~~~p~iifiDEids  581 (806)
T 1ypw_A          508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS  581 (806)
T ss_dssp             CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHH
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEHHHHHH
T ss_conf             98886078767999962289999988747926999652652311036999999999999855996132013556


No 84 
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, ABC ATPase, dimer, kleisin, mitosis, cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=89.78  E-value=0.26  Score=24.98  Aligned_cols=19  Identities=11%  Similarity=0.272  Sum_probs=7.7

Q ss_pred             CCCCHHHHHHHHHHHHCCC
Q ss_conf             6881256789998764189
Q gi|254781225|r   72 SKDEKTANTFKDTFEILHG   90 (789)
Q Consensus        72 ~~d~~~~~~~~~~~~~l~g   90 (789)
                      +..+.+...+.+.+.=..|
T Consensus        33 G~NGsGKS~ileAi~~~lg   51 (430)
T 1w1w_A           33 GPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             CSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHC
T ss_conf             9999988999999999967


No 85 
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20
Probab=89.73  E-value=0.12  Score=27.22  Aligned_cols=154  Identities=14%  Similarity=0.092  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC------CCC-----
Q ss_conf             478999998887999999999999999975987433799997078862578999999972330003------442-----
Q gi|254781225|r  466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI------NAE-----  534 (789)
Q Consensus       466 ~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~------~~~-----  534 (789)
                      +|.+.  +.+|.|-++++.=+.  ++.+..|..    -+++.|+-|.||||+.+.+..+|++....      ...     
T Consensus        18 ~~~~~--f~~ivGq~~~kraL~--laa~~~~~h----hvLl~G~PG~GKT~lar~la~lLP~~~~~e~~~~~~~~~~~~~   89 (350)
T 1g8p_A           18 RPVFP--FSAIVGQEDMKLALL--LTAVDPGIG----GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIP   89 (350)
T ss_dssp             CCCCC--GGGSCSCHHHHHHHH--HHHHCGGGC----CEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSC
T ss_pred             CCCCC--HHHCCCCHHHHHHHH--HHHHCCCCC----EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCC
T ss_conf             89999--766169499999999--987356997----1899899985799999999875787115405764677522260


Q ss_pred             --------------------------HHHHHHC---C--CCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf             --------------------------6764201---2--45555689889973898099993467776013100245415
Q gi|254781225|r  535 --------------------------ASDIMQN---R--PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG  583 (789)
Q Consensus       535 --------------------------~~~~~~~---~--~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltg  583 (789)
                                                ..++..-   .  ........+....+....+++++|.++-..-.-+.|-+...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~G~~d~~~~~~~G~~~~~~G~l~~Ah~gvl~lDEi~~~~~~~~~aLle~me  169 (350)
T 1g8p_A           90 DWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQ  169 (350)
T ss_dssp             TTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHC
T ss_conf             23301234433478863325777876545475102213027862242145330148752245565530889999986641


Q ss_pred             CCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             985873210478606871452899973886342679841664689996
Q gi|254781225|r  584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP  631 (789)
Q Consensus       584 gD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iip  631 (789)
                      ...++..+- +.. +.+...|.++.++|-.|  ..-..++..|+.+.-
T Consensus       170 e~~v~i~r~-g~~-~~~P~~~~liaa~Np~~--~~l~~~llDRf~~~i  213 (350)
T 1g8p_A          170 SGENVVERD-GLS-IRHPARFVLVGSGNPEE--GDLRPQLLDRFGLSV  213 (350)
T ss_dssp             HSEEEECCT-TCC-EEEECCEEEEEEECSCS--CCCCHHHHTTCSEEE
T ss_pred             CCCEEECCC-CCE-ECCCCCEEEEECCCCCC--CCCCHHHHHHCCCEE
T ss_conf             686675688-726-54787669983256777--768845650315256


No 86 
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.72  E-value=0.22  Score=25.41  Aligned_cols=27  Identities=30%  Similarity=0.522  Sum_probs=22.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             999707886257899999997233000
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      ++++|+.|.||||+.++|..-||-..+
T Consensus         5 Ivl~G~~GsGKSTv~~~LA~~lg~~~i   31 (173)
T 1e6c_A            5 IFMVGARGCGMTTVGRELARALGYEFV   31 (173)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             999889999889999999999699979


No 87 
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A*
Probab=89.71  E-value=0.13  Score=27.04  Aligned_cols=22  Identities=50%  Similarity=0.819  Sum_probs=9.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHH
Q ss_conf             9999707886257899999997
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYA  524 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~l  524 (789)
                      ++.+.|+.|+||||++++|..+
T Consensus        33 ~~~ivG~SGsGKSTLl~~i~gl   54 (235)
T 1l2t_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999889999899999999807


No 88 
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3add_A* 3adc_A* 3adb_A*
Probab=89.56  E-value=0.27  Score=24.92  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=14.7

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             7999970788625789999999723
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      +++++.|..|+||||+.+.|...++
T Consensus         5 ~LIil~G~PGSGKST~A~~L~~~l~   29 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             8999889999988999999999998


No 89 
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.54  E-value=0.36  Score=24.02  Aligned_cols=32  Identities=19%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             74337999970788625789999999723300
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      ......+++.|+.|+||||....|..-+|-..
T Consensus        12 ~~~~~iI~i~G~pGSGKsT~ak~La~~~g~~~   43 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVH   43 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             99983899989999987999999999959926


No 90 
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330}
Probab=89.51  E-value=0.47  Score=23.28  Aligned_cols=83  Identities=22%  Similarity=0.237  Sum_probs=42.3

Q ss_pred             EEECCCCCCCCCCHHHHCCEECCCCC-CCCC-CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
Q ss_conf             79743888558986550100137888-8757-947899999888799999999999999997598743379999707886
Q gi|254781225|r  435 ILDLETGQKVKPTKELYITKSTGTPF-VEGE-PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS  512 (789)
Q Consensus       435 v~dl~t~~~~~~~~~~~~t~~~~~~y-~~~a-~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~n  512 (789)
                      .+-++.......+.++++..-+-... .+.. -.|.-...+ +.....++..||+.++-    +    .+-+++.|+.++
T Consensus       116 ~i~IRk~~~~~~tl~~lv~~G~~~~~~~~~~~~~~~~~~l~-~~~~~~e~~~~L~~~v~----~----~~nili~G~tgS  186 (361)
T 2gza_A          116 SVTIRKPSFTRRTLEDYAQQGFFKHVRPMSKSLTPFEQELL-ALKEAGDYMSFLRRAVQ----L----ERVIVVAGETGS  186 (361)
T ss_dssp             EEEEECCCCCCCCHHHHHHTTTTSCCCCSCSCCCHHHHHHH-HHHHHTCHHHHHHHHHH----T----TCCEEEEESSSS
T ss_pred             EEEEECCCCCHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHH----C----CCCEEEECCCCC
T ss_conf             89982576530001557653862011101233581467765-20104899999999997----3----985999899999


Q ss_pred             CHHHHHHHHHHHHC
Q ss_conf             25789999999723
Q gi|254781225|r  513 GKSTLMNLIKYAFG  526 (789)
Q Consensus       513 GKSt~~~~l~~llG  526 (789)
                      ||||+++.|...+.
T Consensus       187 GKTTll~al~~~ip  200 (361)
T 2gza_A          187 GKTTLMKALMQEIP  200 (361)
T ss_dssp             CHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHH
T ss_conf             78999999986211


No 91 
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori 26695} PDB: 1zui_A* 3hr7_A
Probab=89.47  E-value=0.24  Score=25.21  Aligned_cols=27  Identities=30%  Similarity=0.376  Sum_probs=23.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             999970788625789999999723300
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      -++++|..|+||||+.+.|...||=.+
T Consensus         9 ~IiliG~~GsGKSTvak~La~~lg~~~   35 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLALKLEV   35 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             599989999989999999999969987


No 92 
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.42  E-value=0.27  Score=24.84  Aligned_cols=29  Identities=31%  Similarity=0.354  Sum_probs=24.4

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             37999970788625789999999723300
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      -+.+++.|+.|+||||....|..-+|-..
T Consensus        12 ~kiI~l~G~pGSGKsT~a~~La~~~~~~~   40 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTH   40 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf             86899989999998999999999869906


No 93 
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.30  E-value=0.39  Score=23.79  Aligned_cols=30  Identities=30%  Similarity=0.389  Sum_probs=25.3

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             379999707886257899999997233000
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      .+|+.+-|.-|+||||+++.|..-|....+
T Consensus         2 pkfI~iEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             808999899988499999999999831598


No 94 
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=89.19  E-value=0.4  Score=23.77  Aligned_cols=23  Identities=13%  Similarity=0.251  Sum_probs=9.4

Q ss_pred             EEEEEEEC-CCCCHHHHHHHHHHH
Q ss_conf             79999707-886257899999997
Q gi|254781225|r  502 RFIHIRGV-GGSGKSTLMNLIKYA  524 (789)
Q Consensus       502 ~~~~~~G~-G~nGKSt~~~~l~~l  524 (789)
                      ..++++|. ++....-++..+...
T Consensus       325 ~ii~i~G~~~dkd~~~~~~~~~~~  348 (422)
T 1w78_A          325 RVLAVIGMLHDKDIAGTLAWLKSV  348 (422)
T ss_dssp             CEEEEECCBTTSCHHHHHHHHHTT
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             537821555786899999998865


No 95 
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.17  E-value=0.36  Score=24.07  Aligned_cols=29  Identities=31%  Similarity=0.323  Sum_probs=24.2

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             37999970788625789999999723300
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      ...+++.|+.|+||||+...|..-+|-..
T Consensus         6 p~iI~i~G~pGsGKsTia~~Lae~~~~~~   34 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVH   34 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             94899989999988999999999969945


No 96 
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein kinase inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.15  E-value=0.34  Score=24.18  Aligned_cols=42  Identities=12%  Similarity=0.131  Sum_probs=28.9

Q ss_pred             CCCHHHHHHHHHHHHHCCHHHHHHHH---HEEECCCCEECHHHHHHH
Q ss_conf             87889999999999842638888754---326268841117999999
Q gi|254781225|r  674 DIPEVCLKAKEEERQGTDTYQAWIDD---CCDIGENLWEESHSLAKS  717 (789)
Q Consensus       674 ~~p~~v~~a~~~y~~~~D~v~~fi~e---~ce~~~~~~~~~~~l~~~  717 (789)
                      ..++.++.-.+.|.++..+|..|..+   +++++.+.  +..++++.
T Consensus       168 d~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~Id~~~--~i~eV~~~  212 (217)
T 3be4_A          168 DNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKL--PPKEVTEQ  212 (217)
T ss_dssp             GSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTS--CHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CHHHHHHH
T ss_conf             8899999999999999999999999669889998999--99999999


No 97 
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.10  E-value=0.27  Score=24.83  Aligned_cols=26  Identities=35%  Similarity=0.390  Sum_probs=22.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             99997078862578999999972330
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      .++++|..|.||||+..+|...||-.
T Consensus         4 ~Iil~G~~GsGKSTiak~La~~L~~~   29 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALGVG   29 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             89998799998899999999996989


No 98 
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.07  E-value=0.35  Score=24.15  Aligned_cols=29  Identities=24%  Similarity=0.300  Sum_probs=24.3

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             37999970788625789999999723300
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      ..++++.|+.++||||....|..-+|-..
T Consensus         3 ~~~I~i~G~pGsGKsT~a~~Lae~~g~~~   31 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH   31 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             73899989999998999999999859966


No 99 
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.06  E-value=0.17  Score=26.14  Aligned_cols=29  Identities=24%  Similarity=0.324  Sum_probs=23.6

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             37999970788625789999999723300
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      +..+-+.|+-++|||||++.|..++-..+
T Consensus         2 ~~Ii~ivG~nGsGKTTLl~~l~g~l~~~~   30 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPILRERG   30 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf             85999985999889999999971027799


No 100
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.98  E-value=0.23  Score=25.37  Aligned_cols=30  Identities=30%  Similarity=0.372  Sum_probs=24.5

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             379999707886257899999997233000
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      .+-++++|..|.||||+...|...||-..+
T Consensus         4 ~k~Iil~G~~GsGKtTi~k~La~~l~~~~i   33 (175)
T 1via_A            4 AKNIVFIGFMGSGKSTLARALAKDLDLVFL   33 (175)
T ss_dssp             -CCEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             984999868999899999999999599979


No 101
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.87  E-value=0.28  Score=24.76  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=22.9

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             743379999707886257899999997233
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      .+.--.+-+.|+-++||||++++|..++-.
T Consensus       309 i~~Ge~v~i~G~nGsGKsTLlk~l~G~~~p  338 (538)
T 1yqt_A          309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEP  338 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             ECCCCEEEEECCCCCCCCHHHHHHHCCCCC
T ss_conf             758988999747887431589998288789


No 102
>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
Probab=88.87  E-value=0.16  Score=26.38  Aligned_cols=18  Identities=44%  Similarity=0.706  Sum_probs=6.3

Q ss_pred             EEECCCCCHHHHHHHHHH
Q ss_conf             970788625789999999
Q gi|254781225|r  506 IRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       506 ~~G~G~nGKSt~~~~l~~  523 (789)
                      +.|+-|+||||++++|..
T Consensus        38 iiG~nGaGKSTLlk~i~G   55 (266)
T 2yz2_A           38 VAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             EECSTTSSHHHHHHHHTT
T ss_pred             EECCCCCCHHHHHHHHHC
T ss_conf             989999999999999965


No 103
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.78  E-value=0.27  Score=24.86  Aligned_cols=30  Identities=27%  Similarity=0.403  Sum_probs=25.1

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             379999707886257899999997233000
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      .+.+++.|+.+.||||+.+.|..-++....
T Consensus         4 pr~Ivi~GpsGsGK~Tl~~~L~~~~~~~~~   33 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFG   33 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHTTTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             738999999999999999999985897706


No 104
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.66  E-value=0.23  Score=25.36  Aligned_cols=29  Identities=28%  Similarity=0.529  Sum_probs=19.9

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             43379999707886257899999997233
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ....++.+.|+.++||||++++|..++-.
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p   54 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFYQP   54 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             59999999999987399999999678768


No 105
>2c95_A Adenylate kinase 1; AP4A, nucleotide kinase, transferase, ATP-binding; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.64  E-value=0.37  Score=23.99  Aligned_cols=31  Identities=32%  Similarity=0.398  Sum_probs=25.9

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             4337999970788625789999999723300
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      +...++++.|+-|+||||....|..-+|--.
T Consensus         7 kk~~iI~i~G~pGSGKsT~a~~La~~~g~~~   37 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTH   37 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHHCCEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             7786899989999987999999999879954


No 106
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.61  E-value=0.22  Score=25.43  Aligned_cols=20  Identities=15%  Similarity=0.044  Sum_probs=8.5

Q ss_pred             CCCEEECCCCCCCC-CCHHHH
Q ss_conf             79379743888558-986550
Q gi|254781225|r  432 QDGILDLETGQKVK-PTKELY  451 (789)
Q Consensus       432 ~NGv~dl~t~~~~~-~~~~~~  451 (789)
                      .+-|+-|+.|++.. .+|++.
T Consensus       220 aDrI~vl~~G~I~~~Gtp~el  240 (390)
T 3gd7_A          220 CDQFLVIEENKVRQYDSILEL  240 (390)
T ss_dssp             CSEEEEEETTEEEEESSHHHH
T ss_pred             CCEEEEEECCEEEEECCHHHH
T ss_conf             999999989989998689999


No 107
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.49  E-value=0.29  Score=24.70  Aligned_cols=23  Identities=43%  Similarity=0.650  Sum_probs=20.2

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             79999707886257899999997
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYA  524 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~l  524 (789)
                      ++++++|+-|+||||+.++|...
T Consensus         2 kiI~l~G~~GSGKsTva~~L~~~   24 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLLKER   24 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
T ss_conf             79999899998899999999987


No 108
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.46  E-value=0.21  Score=25.62  Aligned_cols=25  Identities=36%  Similarity=0.507  Sum_probs=18.0

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             3799997078862578999999972330
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      +.-+++.|.-++|||||+|.|   +|..
T Consensus        37 ~~nIlVvG~tgsGKSTlIN~L---lg~~   61 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSL---FLTD   61 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHH---TTCC
T ss_pred             CEEEEEECCCCCCHHHHHHHH---HCCC
T ss_conf             429999889979399999998---6887


No 109
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.37  E-value=0.32  Score=24.41  Aligned_cols=38  Identities=21%  Similarity=0.318  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             9999999999999975987433799997078862578999999972
Q gi|254781225|r  480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       480 ~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ++...|++.++-.        .+-+++.|+.++|||||++.|...+
T Consensus       158 ~~~~~~l~~~v~~--------~~nilI~G~tgSGKTTll~al~~~i  195 (330)
T 2pt7_A          158 EQAISAIKDGIAI--------GKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             HHHHHHHHHHHHH--------TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             HHHHHHHHHHHHH--------CCCEEEEEECCCCHHHHHHHHHHHC
T ss_conf             9999999999982--------8958999607999899999997321


No 110
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.28  E-value=0.38  Score=23.87  Aligned_cols=31  Identities=26%  Similarity=0.315  Sum_probs=24.9

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             4337999970788625789999999723300
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      +.-+++++.|+.+.||+|+.+.|...+....
T Consensus         4 ~~g~iivi~GpsGsGK~tl~~~L~~~~~~~~   34 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSY   34 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCTTCCE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf             8872999999999999999999984597451


No 111
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=88.21  E-value=0.95  Score=21.26  Aligned_cols=46  Identities=17%  Similarity=0.310  Sum_probs=32.5

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             99999999999999975987433799997078862578999999972330
Q gi|254781225|r  479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       479 d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      -+|+.+.|.+    ..-........++++|-.++||||+.+.+...+-+.
T Consensus       354 rpeV~~~L~~----~~ppr~~~~~~iw~tGlsgsGKtTia~~l~~~l~~~  399 (546)
T 2gks_A          354 RPEVAEILAE----TYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQAR  399 (546)
T ss_dssp             CHHHHHHHHH----HSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHH----HCHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             8899999998----552014773599984688980769999999998625


No 112
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.20  E-value=0.28  Score=24.76  Aligned_cols=72  Identities=19%  Similarity=0.268  Sum_probs=49.2

Q ss_pred             HHCC-CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECC
Q ss_conf             9759-87433799997078862578999999972330003442676420124555568988997389809999346
Q gi|254781225|r  493 ALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET  567 (789)
Q Consensus       493 ~l~g-~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~  567 (789)
                      +|.+ .++.++++++.|+.++|||.+.--|..-++.. +.+.+..++-  ++...|.+.|....+.+.+--.++-.
T Consensus        31 ~~~~~~~~k~kvI~I~GpTasGKT~lAi~LA~~l~~e-IIsaDS~QvY--k~ldIgTaKpt~~e~~~vpHhLid~v  103 (339)
T 3a8t_A           31 SLRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHFPLE-VINSDKMQVY--KGLDITTNKISVPDRGGVPHHLLGEV  103 (339)
T ss_dssp             -------CCCEEEEEECSTTSSHHHHHHHHHTTSCEE-EEECCSSTTB--SSCTTTTTCCCSGGGTTCCEESSSCB
T ss_pred             EEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCE-EEECCCHHHC--CCCCEEECCCCHHHHCCCCEEEEEEE
T ss_conf             7443545788679998988428999999999987997-9952306426--99974889999999838997999899


No 113
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.20  E-value=0.24  Score=25.27  Aligned_cols=10  Identities=10%  Similarity=0.285  Sum_probs=4.8

Q ss_pred             CCCEEEECCC
Q ss_conf             6843880477
Q gi|254781225|r  131 CGQYFVAYNI  140 (789)
Q Consensus       131 ~G~q~V~~gs  140 (789)
                      .|..+++-|.
T Consensus        28 ~Ge~~~llGp   37 (362)
T 2it1_A           28 DGEFMALLGP   37 (362)
T ss_dssp             TTCEEEEECC
T ss_pred             CCCEEEEECC
T ss_conf             9989999999


No 114
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.19  E-value=0.25  Score=25.04  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=23.9

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             7999970788625789999999723300
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      .++++.|+-|.||||+.+.|...||...
T Consensus         6 ~iI~i~G~sGsGKSTva~~La~~l~~~~   33 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLPGSF   33 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHSTTCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             0899999988349999999999839997


No 115
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.18  E-value=0.34  Score=24.17  Aligned_cols=26  Identities=31%  Similarity=0.346  Sum_probs=22.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             99997078862578999999972330
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      -++++|+.|.||||+...|..-+|-.
T Consensus        13 nI~i~G~pG~GKTTiak~La~~l~~~   38 (180)
T 3iij_A           13 NILLTGTPGVGKTTLGKELASKSGLK   38 (180)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             57998999988899999999996998


No 116
>1sgw_A Putative ABC transporter; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.12
Probab=88.18  E-value=0.14  Score=26.68  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=20.3

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             379999707886257899999997233
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      -.++-+.|+-|+|||||+++|..++-.
T Consensus        35 Gei~~liG~NGsGKSTLl~~l~g~~~p   61 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYLKP   61 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             979999999998399999999666678


No 117
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.06  E-value=0.44  Score=23.49  Aligned_cols=42  Identities=12%  Similarity=0.113  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             999999999999759874337999970788625789999999
Q gi|254781225|r  482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       482 ~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      ++.-+|..++-......-.---+++.|.-++|||||+|.|..
T Consensus         7 ~~~~l~d~l~~~g~~~~~~~P~IvVvG~~s~GKSsliNallg   48 (299)
T 2aka_B            7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999964778888888799987999979999999968


No 118
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.96  E-value=0.17  Score=26.15  Aligned_cols=30  Identities=23%  Similarity=0.277  Sum_probs=24.6

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             379999707886257899999997233000
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      -+++++.|+.++||||+.+.|..-..+...
T Consensus        27 G~iivi~GPSGsGK~tl~~~L~~~~~~~~~   56 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQKNNIV   56 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC----CEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             849999898998999999999962977767


No 119
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.86  E-value=0.32  Score=24.37  Aligned_cols=32  Identities=25%  Similarity=0.234  Sum_probs=23.9

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             74337999970788625789999999723300
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      .+.+.++.+-|.-|+||||+.+.|..-+++..
T Consensus        17 ~~~p~~I~IeG~~GsGKST~~~~L~~~l~~~~   48 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDIC   48 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTTEE
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf             89863999889998768999999998658966


No 120
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, shikimate pathway, nucleotide-binding, amino-acid biosynthesis; 2.10A {Aquifex aeolicus VF5}
Probab=87.75  E-value=0.37  Score=23.98  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=22.7

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             99970788625789999999723300
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      +++.|..+.||||+...|..-||-..
T Consensus         3 I~l~G~~GsGKSTvg~~La~~Lg~~f   28 (168)
T 2pt5_A            3 IYLIGFMCSGKSTVGSLLSRSLNIPF   28 (168)
T ss_dssp             EEEESCTTSCHHHHHHHHHHHHTCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             99989999988999999999959998


No 121
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A
Probab=87.68  E-value=0.43  Score=23.56  Aligned_cols=28  Identities=21%  Similarity=0.245  Sum_probs=23.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             9999707886257899999997233000
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      .+++.|+.|+||||....|..-+|-..+
T Consensus         2 ~I~i~GppGSGKsT~a~~La~~~g~~~i   29 (206)
T 2rgx_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI   29 (206)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf             8999899999879999999999799168


No 122
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens}
Probab=87.68  E-value=0.29  Score=24.69  Aligned_cols=25  Identities=36%  Similarity=0.513  Sum_probs=19.4

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             3799997078862578999999972330
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      +.=+++.|..+.|||||+|.|   +|..
T Consensus        21 ~~rI~liG~tg~GKStl~N~l---~g~~   45 (247)
T 3lxw_A           21 TRRLILVGRTGAGKSATGNSI---LGQR   45 (247)
T ss_dssp             EEEEEEESSTTSSHHHHHHHH---HTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHH---HCCC
T ss_conf             878999999998299999999---6997


No 123
>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13
Probab=87.61  E-value=0.22  Score=25.40  Aligned_cols=11  Identities=9%  Similarity=0.036  Sum_probs=4.8

Q ss_pred             CHHHHHHHHHH
Q ss_conf             25789999999
Q gi|254781225|r  513 GKSTLMNLIKY  523 (789)
Q Consensus       513 GKSt~~~~l~~  523 (789)
                      ....+.++++.
T Consensus       279 ~~~~~~~~~r~  289 (343)
T 3dhw_C          279 DAPLLSETARR  289 (343)
T ss_dssp             SCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             75079999998


No 124
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.59  E-value=0.73  Score=22.00  Aligned_cols=44  Identities=18%  Similarity=0.228  Sum_probs=28.8

Q ss_pred             HHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             8879999999999999999759874337999970788625789999999723
Q gi|254781225|r  475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       475 ~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      .++|-++.++.+.+.+-        ...+++++|++|-|||+++.-+..-+.
T Consensus        13 ~fvGRe~el~~L~~~l~--------~~~~v~i~G~~GiGKTsL~~~~~~~~~   56 (350)
T 2qen_A           13 DIFDREEESRKLEESLE--------NYPLTLLLGIRRVGKSSLLRAFLNERP   56 (350)
T ss_dssp             GSCSCHHHHHHHHHHHH--------HCSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCCCHHHHHHHHHHHHH--------CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             47896999999999984--------599799984999978999999998567


No 125
>1ii8_A RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.56  E-value=0.4  Score=23.71  Aligned_cols=27  Identities=33%  Similarity=0.370  Sum_probs=23.0

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             379999707886257899999997233
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      .-+.+++|+-+.||||+++.|..+|+.
T Consensus        23 ~gl~~i~G~NGsGKStil~Ai~~~L~g   49 (195)
T 1ii8_A           23 EGINLIIGQNGSGKSSLLDAILVGLYW   49 (195)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCCCCHHHHHHHHCCC
T ss_conf             980899888999820087746776048


No 126
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.54  E-value=0.22  Score=25.52  Aligned_cols=24  Identities=25%  Similarity=0.465  Sum_probs=12.1

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             799997078862578999999972
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      .++.+.|+.|+|||||+++|..++
T Consensus        32 e~vaIvG~sGsGKSTLl~ll~gl~   55 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             899999999998999999996567


No 127
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A*
Probab=87.51  E-value=0.57  Score=22.70  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=22.2

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             379999707886257899999997233
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ..++-+.|+.++|||||.+.|+.+|+.
T Consensus        90 PfIIGIaG~sgSGKST~a~~L~~lL~~  116 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             889998898987899999999999853


No 128
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=87.50  E-value=0.52  Score=23.01  Aligned_cols=30  Identities=13%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             433799997078862578999999972330
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      .-.+.+++.|+.+.||+|+++.|..-+.+.
T Consensus         3 ~m~k~ivi~GpSG~GK~tl~~~L~~~~~~~   32 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR   32 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             887669999999899899999999729767


No 129
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.46  E-value=0.22  Score=25.41  Aligned_cols=24  Identities=33%  Similarity=0.544  Sum_probs=13.6

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             799997078862578999999972
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      -++-+.|+-|.||||++++|..++
T Consensus        32 e~~~i~G~nGsGKSTLlk~i~Gl~   55 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             899998899996999999995688


No 130
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.45  E-value=0.42  Score=23.59  Aligned_cols=30  Identities=33%  Similarity=0.457  Sum_probs=24.1

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             433799997078862578999999972330
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      ..+.-+++.|+.|+||||....|..-+|=.
T Consensus         6 ~~~m~I~i~GppGsGK~T~a~~la~~~~~~   35 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKEKFGIP   35 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf             676079998999998799999999997993


No 131
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.36  E-value=0.45  Score=23.43  Aligned_cols=28  Identities=29%  Similarity=0.334  Sum_probs=22.6

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             3379999707886257899999997233
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      .+-++++.|+.++||||+++.+...+..
T Consensus        24 ~~GlilisG~tGSGKTT~l~all~~i~~   51 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             8988999899996399999999984264


No 132
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.27  E-value=0.47  Score=23.30  Aligned_cols=26  Identities=38%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             99997078862578999999972330
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      .+.+.|+-|+||||+.++|..-||..
T Consensus         2 ~I~IeG~~GsGKST~~k~L~~~l~~~   27 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYE   27 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             89998889878999999999984996


No 133
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.25  E-value=0.42  Score=23.62  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=26.1

Q ss_pred             HHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             9759874337999970788625789999999723300
Q gi|254781225|r  493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       493 ~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      -|.+.... .-+++.|+-|+||||...+|..-+|-..
T Consensus        13 ~~~p~~~~-m~I~i~G~pGsGKsT~a~~Lak~l~~~~   48 (201)
T 2cdn_A           13 GLVPRGSH-MRVLLLGPPGAGKGTQAVKLAEKLGIPQ   48 (201)
T ss_dssp             ---CCCSC-CEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             78999997-4799989999998999999999979927


No 134
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.24  E-value=0.4  Score=23.75  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=23.6

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             799997078862578999999972330
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      +++++.|+-|+||||+.+.|...++..
T Consensus         4 ~iI~i~G~~GsGKTT~~~~L~~~l~~~   30 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRKE   30 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             889998999959899999999998765


No 135
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.23  E-value=0.23  Score=25.33  Aligned_cols=23  Identities=39%  Similarity=0.494  Sum_probs=14.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             99997078862578999999972
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ++.+.|+-|.||||++++|..++
T Consensus        32 ~v~liGpNGaGKSTLlk~i~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999899984999999996598


No 136
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.09  E-value=0.7  Score=22.12  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=14.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             2216468999999999762001
Q gi|254781225|r  159 VEDTPLLSEEDVEYLFKFFQEI  180 (789)
Q Consensus       159 ~~~~P~i~~~~~~~l~~~~~~~  180 (789)
                      ++++++++....+.+...+...
T Consensus       207 LDel~~L~~~~~~~Ll~~Le~~  228 (604)
T 3k1j_A          207 IDEIATLSLKMQQSLLTAMQEK  228 (604)
T ss_dssp             ETTGGGSCHHHHHHHHHHHHHS
T ss_pred             EECHHHCCHHHHHHHHHHHHHC
T ss_conf             8213333877899999999718


No 137
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, cell cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.02  E-value=0.31  Score=24.50  Aligned_cols=20  Identities=40%  Similarity=0.537  Sum_probs=16.1

Q ss_pred             EEEEEECCCCCHHHHHHHHH
Q ss_conf             99997078862578999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~  522 (789)
                      -+++.|..+.|||||+|.|.
T Consensus        20 nIlVvG~~g~GKSTliN~L~   39 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLF   39 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             99998799791999999986


No 138
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Probab=87.00  E-value=0.54  Score=22.86  Aligned_cols=26  Identities=35%  Similarity=0.520  Sum_probs=21.8

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             37999970788625789999999723
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      .+|+.+-|+-|+||||.++.|..-|.
T Consensus         2 ~~fI~ieG~dGsGKsT~~~~L~~~L~   27 (205)
T 2ccj_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             96899989988709999999999996


No 139
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.85  E-value=0.6  Score=22.59  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=14.9

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             37999970788625789999999723
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      +..+++.|+-++|||||++-|..-++
T Consensus        14 ~~vi~v~G~~GaGKTTLl~~Ll~~~~   39 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             88899991899809999999999873


No 140
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A
Probab=86.82  E-value=0.43  Score=23.50  Aligned_cols=28  Identities=36%  Similarity=0.576  Sum_probs=22.9

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             7999970788625789999999723300
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      +.+++.|+.|.||||+++.|..-+....
T Consensus         2 r~Ivl~GpsGsGK~Tl~~~L~~~~~~~~   29 (186)
T 3a00_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSF   29 (186)
T ss_dssp             CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf             7799989999998999999997488775


No 141
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=86.78  E-value=0.27  Score=24.90  Aligned_cols=11  Identities=45%  Similarity=0.963  Sum_probs=3.4

Q ss_pred             ECCCCCHHHHH
Q ss_conf             07886257899
Q gi|254781225|r  508 GVGGSGKSTLM  518 (789)
Q Consensus       508 G~G~nGKSt~~  518 (789)
                      |+-|.||||++
T Consensus        71 G~sGsGKSTLl   81 (290)
T 2bbs_A           71 GSTGAGKTSLL   81 (290)
T ss_dssp             ESTTSSHHHHH
T ss_pred             CCCCCHHHHHH
T ss_conf             99997599999


No 142
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.78  E-value=0.19  Score=25.82  Aligned_cols=19  Identities=37%  Similarity=0.614  Sum_probs=6.7

Q ss_pred             EEEECCCCCHHHHHHHHHH
Q ss_conf             9970788625789999999
Q gi|254781225|r  505 HIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       505 ~~~G~G~nGKSt~~~~l~~  523 (789)
                      .+.|+-|+||||++++|..
T Consensus        84 aIvG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           84 ALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             EEESSSCHHHHHHHHHHTT
T ss_pred             EEECCCCCHHHHHHHHHHC
T ss_conf             9999999869999999965


No 143
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=86.75  E-value=0.83  Score=21.65  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=11.3

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             99997078862578999999972
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +.++.|++|+||||++..|..++
T Consensus       206 ~~~i~G~aGTGKTt~l~~i~~~~  228 (574)
T 3e1s_A          206 LVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHH
T ss_conf             89998998600999999999999


No 144
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens}
Probab=86.72  E-value=0.57  Score=22.74  Aligned_cols=29  Identities=17%  Similarity=0.375  Sum_probs=23.6

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             37999970788625789999999723300
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      ++.+++.|+.+.||||+++.|..-+.+..
T Consensus        19 ~r~Ivl~GpSG~GK~tl~~~L~~~~~~~~   47 (197)
T 3ney_A           19 RKTLVLIGASGVGRSHIKNALLSQNPEKF   47 (197)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf             96799999899999999999997296566


No 145
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.66  E-value=0.43  Score=23.56  Aligned_cols=59  Identities=20%  Similarity=0.241  Sum_probs=34.9

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC--CHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCC
Q ss_conf             43379999707886257899999997233000344--267642012455556898899738980999934677
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA--EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~--~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~  569 (789)
                      ..+.+++++|+.++|||-++..+..-+........  +....            ..+..+....++++.+.+.
T Consensus        34 ~~~~~l~L~G~~GsGKTHLl~a~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~d~l~iDDi~~   94 (149)
T 2kjq_A           34 KHGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM------------PLTDAAFEAEYLAVDQVEK   94 (149)
T ss_dssp             CCCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS------------CCCGGGGGCSEEEEESTTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHH------------HHHHHHHCCCCHHHHHHHH
T ss_conf             788859998999998899999999999808991899735453------------2588876024134456887


No 146
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=86.57  E-value=0.87  Score=21.50  Aligned_cols=134  Identities=10%  Similarity=0.048  Sum_probs=70.0

Q ss_pred             HHHHHHHH---CCCHHHHHHHHHHHHHHHCCCC---CCCEEEEEEECCCCCHHHHHHHHHHHHCC--CCC-CCCCHHHHH
Q ss_conf             99999888---7999999999999999975987---43379999707886257899999997233--000-344267642
Q gi|254781225|r  469 FLDLVSGY---FESEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAFGN--QYV-INAEASDIM  539 (789)
Q Consensus       469 ~~~~l~~~---~~d~e~~~~l~~~~g~~l~g~~---~~~~~~~~~G~G~nGKSt~~~~l~~llG~--~~~-~~~~~~~~~  539 (789)
                      +..+...+   +|-+.    +.+.+-..|.|.+   +...-+.+.|.-+.|||.|++.+..+...  |.. ...+..-++
T Consensus       205 ~~~l~~siaPI~G~e~----vK~ailL~L~gg~~k~rg~ihiLLvGDPGtgKSqLlk~v~~laPR~v~tsG~~sS~aGLT  280 (506)
T 3f8t_A          205 LTTFARAIAPLPGAEE----VGKMLALQLFSCVGKNSERLHVLLAGYPVVCSEILHHVLDHLAPRGVYVDLRRTELTDLT  280 (506)
T ss_dssp             HHHHHHHHCCSTTCHH----HHHHHHHHHTTCCSSGGGCCCEEEESCHHHHHHHHHHHHHHTCSSEEEEEGGGCCHHHHS
T ss_pred             HHHHHHHHCCCCCCHH----HHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
T ss_conf             9999997587668778----999999984189777778536999789964687999999874862111355445345662


Q ss_pred             HC-CCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCC-EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCC
Q ss_conf             01-24555568988997389809999346777601310-0245415985873210478606871452899973886
Q gi|254781225|r  540 QN-RPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH  613 (789)
Q Consensus       540 ~~-~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~-~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~  613 (789)
                      .. .......-.+....|...-.+.++|.++-....-+ +.-.|.. ..|+..+      .+..-.+.++.++|-.
T Consensus       281 a~v~~d~~~~leaGaLvLAd~GI~cIDE~dkm~~~d~saL~EAMEq-qtVsIak------~tl~aR~sVlAAaNP~  349 (506)
T 3f8t_A          281 AVLKEDRGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDK-GTVTVDG------IALNARCAVLAAINPG  349 (506)
T ss_dssp             EEEEESSSEEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHH-SEEEETT------EEEECCCEEEEEECCC
T ss_pred             EEEECCCCCEEECCEEECCCCCEEEEECHHHCCHHHHHHHHHHHHC-CEEEEEE------EECCCCCEEEEEECCC
T ss_conf             1452167630326703316788689801464498899999999872-9278745------4025651368886664


No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=86.49  E-value=0.39  Score=23.81  Aligned_cols=24  Identities=33%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             379999707886257899999997233
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      +.=+++.|..+.|||||+|.|   +|.
T Consensus        22 e~~I~l~G~tg~GKSsl~N~l---~g~   45 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSI---LRK   45 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHH---HTS
T ss_pred             CCEEEEECCCCCCHHHHHHHH---HCC
T ss_conf             838999918998399999999---799


No 148
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.46  E-value=0.27  Score=24.87  Aligned_cols=16  Identities=38%  Similarity=0.810  Sum_probs=5.5

Q ss_pred             EEECCCCCHHHHHHHH
Q ss_conf             9707886257899999
Q gi|254781225|r  506 IRGVGGSGKSTLMNLI  521 (789)
Q Consensus       506 ~~G~G~nGKSt~~~~l  521 (789)
                      +.|+-+.||||++++|
T Consensus        39 ivG~sGsGKSTLl~ll   54 (229)
T 2pze_A           39 VAGSTGAGKTSLLMMI   54 (229)
T ss_dssp             EECCTTSSHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHH
T ss_conf             9999988399999999


No 149
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.36  E-value=0.72  Score=22.06  Aligned_cols=68  Identities=12%  Similarity=0.154  Sum_probs=37.9

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCC--CCCCCHH-HHHHCC-CCCCCCCCHHHHHHCCCEEEEEECCC
Q ss_conf             37999970788625789999999723300--0344267-642012-45555689889973898099993467
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY--VINAEAS-DIMQNR-PPEAGKANPSLIRLMGSRIVIISETN  568 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~--~~~~~~~-~~~~~~-~~~~~~~~~~la~l~g~r~~~~~E~~  568 (789)
                      .+=++++|+.|+|||.++..|.+-+-...  +.-.+.. ++..-+ ....+....-+-.+...-+++++|..
T Consensus        54 ~~gl~l~G~~GtGKT~La~ai~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~d~LiiDdlg  125 (202)
T 2w58_A           54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLG  125 (202)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHSSEEEEEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEECCHH
T ss_conf             874899899989789999999999753488289974566899999998611044321355147733761121


No 150
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=86.34  E-value=0.64  Score=22.39  Aligned_cols=30  Identities=37%  Similarity=0.473  Sum_probs=24.0

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             433799997078862578999999972330
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      +.-+|+.+.|.-|+||||+.+.|...|...
T Consensus         8 ~kg~~I~ieG~dGsGKtT~~~~L~e~L~~~   37 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNN   37 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             688599998998889999999999999877


No 151
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.29  E-value=0.62  Score=22.49  Aligned_cols=29  Identities=41%  Similarity=0.551  Sum_probs=22.8

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             874337999970788625789999999723
Q gi|254781225|r  497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ..+....+-++|.-|+||||+.+.++. +|
T Consensus         4 ~~k~P~iIgItG~~GSGKsTva~~l~~-~g   32 (203)
T 1uf9_A            4 EAKHPIIIGITGNIGSGKSTVAALLRS-WG   32 (203)
T ss_dssp             --CCCEEEEEEECTTSCHHHHHHHHHH-TT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH-CC
T ss_conf             888848999989987769999999998-79


No 152
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=86.21  E-value=0.55  Score=22.82  Aligned_cols=26  Identities=31%  Similarity=0.606  Sum_probs=21.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             79999707886257899999997233
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      +|+.+-|.-|+||||+.+.|...|..
T Consensus         4 ~~I~ieG~dGsGKsT~~~~L~~~L~~   29 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             18998899998899999999999997


No 153
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.15  E-value=0.55  Score=22.82  Aligned_cols=24  Identities=29%  Similarity=0.374  Sum_probs=21.1

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             999707886257899999997233
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      +++.|+.++||||+...|..-+|=
T Consensus         3 I~i~GpPGSGK~T~a~~La~~~~~   26 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKYGI   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             999899999879999999999798


No 154
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A*
Probab=86.10  E-value=0.41  Score=23.69  Aligned_cols=15  Identities=27%  Similarity=0.465  Sum_probs=5.6

Q ss_pred             EEECCCCCHHHHHHH
Q ss_conf             970788625789999
Q gi|254781225|r  506 IRGVGGSGKSTLMNL  520 (789)
Q Consensus       506 ~~G~G~nGKSt~~~~  520 (789)
                      +.|.-++|||||+|.
T Consensus        31 VvG~~ssGKSTlINa   45 (341)
T 2x2e_A           31 VVGGQSAGKSSVLEN   45 (341)
T ss_dssp             EECBTTSSHHHHHHT
T ss_pred             EECCCCCCHHHHHHH
T ss_conf             984899979999999


No 155
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP; HET: ADP; 1.70A {Leishmania major strain friedlin} SCOP: c.37.1.1
Probab=86.08  E-value=0.58  Score=22.68  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=26.5

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             379999707886257899999997233000344
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA  533 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~  533 (789)
                      ...+++.|+-|.||||+.+.|..-++.+.....
T Consensus        10 g~~Ivi~G~~GsGKTTiak~La~~l~~~~~~~~   42 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV   42 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCCEECH
T ss_conf             976999879999889999999998689955324


No 156
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str}
Probab=85.82  E-value=0.66  Score=22.29  Aligned_cols=27  Identities=33%  Similarity=0.429  Sum_probs=22.5

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             379999707886257899999997233
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      -+|+.+-|+-|+||||+.++|...+..
T Consensus         4 g~~I~ieG~dGsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             718999899887299999999999971


No 157
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=85.79  E-value=0.33  Score=24.32  Aligned_cols=30  Identities=30%  Similarity=0.455  Sum_probs=24.0

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             433799997078862578999999972330
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      .......++|+-|.||||++++|..++-.+
T Consensus       367 ~~g~~i~ivG~sGsGKSTLl~lL~g~~~p~  396 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYDVD  396 (582)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf             899889997799856889999761787899


No 158
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.77  E-value=0.59  Score=22.63  Aligned_cols=27  Identities=33%  Similarity=0.357  Sum_probs=22.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             999970788625789999999723300
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      -+++.|+.|+||||....|..-+|-..
T Consensus         7 ~I~i~GppGSGKsT~a~~La~~~~~~~   33 (222)
T 1zak_A            7 KVMISGAPASGKGTQCELIKTKYQLAH   33 (222)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf             899989999987999999999979978


No 159
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.69  E-value=0.59  Score=22.64  Aligned_cols=27  Identities=33%  Similarity=0.370  Sum_probs=22.7

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             379999707886257899999997233
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      .-+.+++|+-+.||||+++.|..+|..
T Consensus        23 ~~~~vi~G~Ng~GKStil~Ai~~~l~~   49 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGLYW   49 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf             983999999999743799999998607


No 160
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=85.63  E-value=0.47  Score=23.26  Aligned_cols=25  Identities=40%  Similarity=0.474  Sum_probs=19.9

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             3799997078862578999999972330
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      +.=++++|..+.||||++|.|   +|..
T Consensus        29 ~lrI~liG~~g~GKSSl~N~L---~g~~   53 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSI---LGRK   53 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHH---HTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHH---HCCC
T ss_conf             748999899998399999999---5998


No 161
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.51  E-value=0.58  Score=22.66  Aligned_cols=41  Identities=10%  Similarity=0.037  Sum_probs=27.8

Q ss_pred             CCCHHHHHHHHHHHHHCCHHHHHHHH---HEEECCCCEECHHHHHH
Q ss_conf             87889999999999842638888754---32626884111799999
Q gi|254781225|r  674 DIPEVCLKAKEEERQGTDTYQAWIDD---CCDIGENLWEESHSLAK  716 (789)
Q Consensus       674 ~~p~~v~~a~~~y~~~~D~v~~fi~e---~ce~~~~~~~~~~~l~~  716 (789)
                      ..++.++.-.+.|+.+..++..|..+   +.+++.+  .+..++++
T Consensus       179 d~~e~i~kRl~~y~~~~~pl~~~y~~~~~~~~Id~~--~sideV~~  222 (233)
T 1ak2_A          179 DNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDAS--QTPDVVFA  222 (233)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETT--SCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC--CCHHHHHH
T ss_conf             879999999999999999999999966988999899--99999999


No 162
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C*
Probab=85.51  E-value=0.5  Score=23.11  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=21.2

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             433799997078862578999999972
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ..-.++-+.|+-|+|||||+++|..+.
T Consensus        24 ~~Gei~~iiGpNGaGKSTLl~~l~Gl~   50 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             589899999899981999999994787


No 163
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=85.43  E-value=0.66  Score=22.28  Aligned_cols=26  Identities=12%  Similarity=0.116  Sum_probs=15.1

Q ss_pred             HHHHHHCCCCC----CCCHHHHHHHHHHHH
Q ss_conf             99999878898----878899999999998
Q gi|254781225|r  663 VKAYISKGLDV----DIPEVCLKAKEEERQ  688 (789)
Q Consensus       663 ~~~~~~~g~~~----~~p~~v~~a~~~y~~  688 (789)
                      ++..+++|..+    ..|+++....+-|+.
T Consensus       591 lR~~L~~G~~pP~~f~rpeVa~iL~~~y~~  620 (630)
T 1x6v_B          591 MRKLAREGQKPPEGFMAPKAWTVLTEYYKS  620 (630)
T ss_dssp             HHHHHHTTCCCCTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             999997859999550878999999999987


No 164
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.43  E-value=0.82  Score=21.66  Aligned_cols=28  Identities=29%  Similarity=0.310  Sum_probs=23.6

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             4337999970788625789999999723
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ....+++++|..|+||||+.+.|...|.
T Consensus        23 ~kg~vIwltGlsGSGKTTiA~~L~~~L~   50 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9987999989999988999999999999


No 165
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=85.20  E-value=0.76  Score=21.90  Aligned_cols=44  Identities=25%  Similarity=0.295  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             9999999999997598-7433799997078862578999999972330
Q gi|254781225|r  482 VMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       482 ~~~~l~~~~g~~l~g~-~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      ++.-+.+++...-.|. .++..-+.+.|..+.|||||+|.|   +|..
T Consensus       213 i~~~l~~ll~~~~~g~~l~~G~~VaIvG~PNvGKSSL~N~L---~g~~  257 (476)
T 3gee_A          213 LRSEVNRLIDSYQHGRIVSEGVSTVIAGKPNAGKSTLLNTL---LGQE  257 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCEEEEEECCTTSSHHHHHHHC---C---
T ss_pred             HHHHHHHHHHHHHHCHHHCCCCEEEEECCCCCCHHHHHHHH---HCCC
T ss_conf             99999999987751345325977999899884277999998---3766


No 166
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.12  E-value=0.35  Score=24.15  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=10.1

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             99997078862578999999972
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ++-+.|+-++||||++++|..++
T Consensus        34 i~~liGpNGaGKSTll~~i~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999984999999997797


No 167
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.12  E-value=0.81  Score=21.70  Aligned_cols=72  Identities=19%  Similarity=0.184  Sum_probs=48.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf             799997078862578999999972330003442676420124555568988997389809999346777601310
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA  576 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~  576 (789)
                      +++++.|+.++|||-+.--|..-+|.. +.+.+..++-+  +...+.+.|....+.+..--.++..+..+..+.+
T Consensus         2 ~l~~I~GpTasGKS~lAi~LA~~~~~e-IIs~DS~QvY~--~l~IgTakp~~~e~~~v~H~li~~~~~~~~~s~~   73 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWP-VVALDRVQCCP--QIATGSGRPLESELQSTRRIYLDSRPLTEGILDA   73 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCC-EEECCSGGGCG--GGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCE-EEECCHHHHCC--CCCEEECCCCHHHHCHHCEEEECCCCCCCCCCHH
T ss_conf             699997987527899999999986994-99613474259--9986778999789630020101355866356699


No 168
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.11  E-value=0.31  Score=24.44  Aligned_cols=28  Identities=29%  Similarity=0.471  Sum_probs=23.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             9999707886257899999997233000
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      .+-+.|+.|+||||+.+.|..+|+...+
T Consensus         7 IIgItG~SGSGKTTva~~L~~il~~~~v   34 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIFRREGV   34 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             8999899978099999999998534699


No 169
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.08  E-value=0.52  Score=22.96  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=18.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             337999970788625789999999723
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      .+-++++.|+.++||||++..+..-+-
T Consensus       166 ~~GlilisGpTGSGKSTTl~a~l~~i~  192 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             897799967998864178999987750


No 170
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus VF5}
Probab=84.98  E-value=0.7  Score=22.12  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=19.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             999970788625789999999723
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      |+.+.|.-|+||||+.+.|..-|.
T Consensus         2 ~I~ieG~~GsGKsT~~~~L~~~L~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899988998989999999999998


No 171
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.97  E-value=0.44  Score=23.47  Aligned_cols=31  Identities=32%  Similarity=0.434  Sum_probs=24.5

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             4337999970788625789999999723300
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      +....+.++|+-|.||||++++|..++-.+.
T Consensus       367 ~~G~~~~ivG~sGsGKSTLlkll~g~~~p~~  397 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFYDIDE  397 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTCCSE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHCCCCCCCC
T ss_conf             6998999989999849999999807874898


No 172
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=84.93  E-value=0.65  Score=22.36  Aligned_cols=41  Identities=7%  Similarity=0.050  Sum_probs=28.5

Q ss_pred             CCCHHHHHHHHHHHHHCCHHHHHHHH---HEEECCCCEECHHHHHH
Q ss_conf             87889999999999842638888754---32626884111799999
Q gi|254781225|r  674 DIPEVCLKAKEEERQGTDTYQAWIDD---CCDIGENLWEESHSLAK  716 (789)
Q Consensus       674 ~~p~~v~~a~~~y~~~~D~v~~fi~e---~ce~~~~~~~~~~~l~~  716 (789)
                      ..++.++.-.+.|++...+|..|.++   +.+++.+.  +..++++
T Consensus       168 D~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~Id~~~--~~~eV~~  211 (220)
T 1aky_A          168 DNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQ--PPATVWA  211 (220)
T ss_dssp             CSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTS--CHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC--CHHHHHH
T ss_conf             9899999999999999999999998579889998999--9999999


No 173
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=84.87  E-value=0.71  Score=22.11  Aligned_cols=28  Identities=32%  Similarity=0.598  Sum_probs=21.9

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             3379999707886257899999997233
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ..+|+.+-|.-|+||||+++.|..-|..
T Consensus        26 ~~kfIvieG~dGsGKSTq~~~L~~~L~~   53 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             7898999899988499999999999996


No 174
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP PSI; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=84.86  E-value=0.59  Score=22.62  Aligned_cols=27  Identities=26%  Similarity=0.477  Sum_probs=22.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             999970788625789999999723300
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      .+++.|+.|.||+|+++.|...+.+..
T Consensus        14 ~Ivl~GpsGsGK~tl~~~L~~~~~~~~   40 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSEFPSRF   40 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHCTTTE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf             189999999999999999997387775


No 175
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.80  E-value=0.67  Score=22.27  Aligned_cols=26  Identities=27%  Similarity=0.325  Sum_probs=21.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             99970788625789999999723300
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      +++.|+.|+||||....|..-+|=..
T Consensus         3 I~i~GpPGsGK~T~a~~la~~~~~~~   28 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKYEIPH   28 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf             99989999987999999999979937


No 176
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=84.66  E-value=0.65  Score=22.35  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=24.3

Q ss_pred             HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             999975987433799997078862578999999
Q gi|254781225|r  490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       490 ~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      +...|.+....+.=+++.|.++.|||+|++-+.
T Consensus        10 ~~s~~~~~~~ke~KI~lvG~~~vGKTsLi~~l~   42 (181)
T 2h17_A           10 HSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFS   42 (181)
T ss_dssp             -----------CEEEEEEEETTSSHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf             787877799951799999999999899999997


No 177
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=84.58  E-value=0.55  Score=22.83  Aligned_cols=34  Identities=21%  Similarity=0.318  Sum_probs=24.8

Q ss_pred             HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             9999997598743379999707886257899999
Q gi|254781225|r  488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       488 ~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      -.....|.+..+.+.=+++.|..+.|||||++-+
T Consensus         8 ~~~~~~~~p~g~k~~kI~ivG~~nvGKSSLin~l   41 (190)
T 2h57_A            8 HHHSSGLVPRGSKEVHVLCLGLDNSGKTTIINKL   41 (190)
T ss_dssp             -------------CEEEEEEECTTSSHHHHHHHT
T ss_pred             CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf             4347787779995579999999999899999999


No 178
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.42  E-value=0.6  Score=22.58  Aligned_cols=48  Identities=19%  Similarity=0.275  Sum_probs=32.1

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             79999999999999999759874337999970788625789999999723
Q gi|254781225|r  477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       477 ~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      +|-++-++-+..++..++.+...  ..++++|+.|.|||++++.+..-+.
T Consensus        22 ~gRe~e~~~l~~~l~~~~~~~~~--~~lli~GppGtGKT~l~~~l~~~l~   69 (387)
T 2v1u_A           22 PHREAELRRLAEVLAPALRGEKP--SNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             TTCHHHHHHHHHTTGGGTSSCCC--CCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCC--CCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             98299999999999999728999--8369987998809999999999976


No 179
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3idq_A 3a36_A 3a37_A*
Probab=84.30  E-value=0.94  Score=21.27  Aligned_cols=13  Identities=8%  Similarity=0.138  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             8999999972330
Q gi|254781225|r  516 TLMNLIKYAFGNQ  528 (789)
Q Consensus       516 t~~~~l~~llG~~  528 (789)
                      -|.++-..++|++
T Consensus       326 ~L~~l~~~l~~~~  338 (354)
T 2woj_A          326 NLTKFSQFLNKEY  338 (354)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999870888


No 180
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=84.29  E-value=0.72  Score=22.04  Aligned_cols=41  Identities=12%  Similarity=0.124  Sum_probs=27.8

Q ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHH---HEEECCCCEECHHHHHHHH
Q ss_conf             7889999999999842638888754---3262688411179999999
Q gi|254781225|r  675 IPEVCLKAKEEERQGTDTYQAWIDD---CCDIGENLWEESHSLAKSY  718 (789)
Q Consensus       675 ~p~~v~~a~~~y~~~~D~v~~fi~e---~ce~~~~~~~~~~~l~~~y  718 (789)
                      .++.+..-.+.|.....+|..|..+   +.+++.+   ...++++.-
T Consensus       165 ~~e~i~~R~~~y~~~t~pv~~~Y~~~~~~~~Idg~---~~~eV~~~I  208 (227)
T 1zd8_A          165 KPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT---ETNKIWPYV  208 (227)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS---SHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC---CHHHHHHHH
T ss_conf             89999999999999888999999955978997898---868999999


No 181
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.26  E-value=1.2  Score=20.49  Aligned_cols=21  Identities=38%  Similarity=0.539  Sum_probs=16.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHH
Q ss_conf             999970788625789999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      -+++.|..+.|||+|++.+..
T Consensus        50 ~V~ivG~~n~GKTSLl~~l~~   70 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             899999999998999999956


No 182
>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20
Probab=84.25  E-value=0.86  Score=21.53  Aligned_cols=43  Identities=14%  Similarity=0.298  Sum_probs=27.6

Q ss_pred             HHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             88799999999999999997598743379999707886257899999997233
Q gi|254781225|r  475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       475 ~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      +++|-++.++.++...          +.+++++|++|.|||++++-+..-++.
T Consensus        14 ~f~GRe~El~~L~~~~----------~~~vli~G~~GiGKTsLl~~~~~~~~~   56 (357)
T 2fna_A           14 DFFDREKEIEKLKGLR----------APITLVLGLRRTGKSSIIKIGINELNL   56 (357)
T ss_dssp             GSCCCHHHHHHHHHTC----------SSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHC----------CCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             2889799999999848----------997999839999899999999997699


No 183
>1ka8_A Putative P4-specific DNA primase; winged helix, transferase; 2.95A {Enterobacteria phage P4} SCOP: a.4.5.20
Probab=83.98  E-value=1.5  Score=19.86  Aligned_cols=80  Identities=21%  Similarity=0.154  Sum_probs=47.0

Q ss_pred             HCCHHHHHHHHHEEECC-----------CCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             42638888754326268-----------8411179999999999985046675554525689999863542333100102
Q gi|254781225|r  689 GTDTYQAWIDDCCDIGE-----------NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE  757 (789)
Q Consensus       689 ~~D~v~~fi~e~ce~~~-----------~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~~~g~~~~~~~~~~~  757 (789)
                      ++|++-.|..--.....           ....+...||.||-.||+.++-  .++++-+.|+..|.+.--.-|++-.  +
T Consensus         1 ~sDpL~dFc~yl~~~~~~~GL~mGnani~p~~pR~yLYhAYLaymea~g~--~~pl~l~~Fg~~l~~alkE~g~~y~--k   76 (100)
T 1ka8_A            1 DADPTFDFIGYLETLPQTSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE--K   76 (100)
T ss_dssp             CCCHHHHHGGGEEECSSSCSCBCCCTTCCSCCTTTBHHHHHHHHHHHTTC--SCCCCHHHHHHHHHHHHHHTTCCCC--E
T ss_pred             CCCCHHHHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHH--E
T ss_conf             98608889999881677775065367788886388889999999998299--8985187889988999999876561--2


Q ss_pred             CCCCCCCEEEEEEECC
Q ss_conf             5676520899798656
Q gi|254781225|r  758 KEWKSKRIIKGLKLKP  773 (789)
Q Consensus       758 ~~~~~~r~~~Gi~Lk~  773 (789)
                      ++.+ +.+..-|.|+.
T Consensus        77 r~tk-~g~~tNv~l~d   91 (100)
T 1ka8_A           77 RHTK-QGIQTNLTLKE   91 (100)
T ss_dssp             EEET-TEEEESEEECT
T ss_pred             EECC-CCEEEEEEECC
T ss_conf             3127-96897567534


No 184
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=83.97  E-value=0.83  Score=21.65  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=21.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             33799997078862578999999972
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      .+-++++.|+.++||||++..+...+
T Consensus       122 ~~GliLvtGpTGSGKTTtl~all~~~  147 (356)
T 3jvv_A          122 PRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             79779998999998579999998743


No 185
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=83.92  E-value=1.5  Score=19.85  Aligned_cols=70  Identities=16%  Similarity=0.226  Sum_probs=40.7

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHH-CCC--CCCCCCHHHHHHC-C-CCCCCCCCHHHHHHCCCEEEEEECCCC
Q ss_conf             33799997078862578999999972-330--0034426764201-2-455556898899738980999934677
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAF-GNQ--YVINAEASDIMQN-R-PPEAGKANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~ll-G~~--~~~~~~~~~~~~~-~-~~~~~~~~~~la~l~g~r~~~~~E~~~  569 (789)
                      ...-++++|+.|.|||.++..+.+-+ ..+  .+...+...+... . ....+....-+..+....+++++|...
T Consensus        37 ~~~~l~l~G~~GtGKT~La~ai~~~l~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lLiiDd~g~  111 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGS  111 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHCCCEEEEEECCCC
T ss_conf             597699999999988999999999988605963677514417888878873150899998617511999982135


No 186
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas}
Probab=83.79  E-value=0.78  Score=21.83  Aligned_cols=25  Identities=44%  Similarity=0.504  Sum_probs=21.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             9997078862578999999972330
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      +++.|+.++||||....|..-+|=.
T Consensus         3 Ivi~GpPGSGK~Tqa~~La~~~g~~   27 (223)
T 2xb4_A            3 ILIFGPNGSGKGTQGNLVKDKYSLA   27 (223)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf             9998899998799999999997985


No 187
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=83.71  E-value=0.69  Score=22.19  Aligned_cols=13  Identities=15%  Similarity=0.322  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             5789999999723
Q gi|254781225|r  514 KSTLMNLIKYAFG  526 (789)
Q Consensus       514 KSt~~~~l~~llG  526 (789)
                      |..+++.+..++.
T Consensus       382 ~~~~i~~vd~~l~  394 (550)
T 2qpt_A          382 KPKLLEALDDMLA  394 (550)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             7999999999864


No 188
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genomics consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum 3D7}
Probab=83.69  E-value=0.87  Score=21.51  Aligned_cols=26  Identities=35%  Similarity=0.554  Sum_probs=22.0

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             99970788625789999999723300
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      +++.|+.+.||+|+++.|..-+.+..
T Consensus        26 IVl~GPSGsGK~tL~~~L~~~~p~~~   51 (218)
T 1z6g_A           26 LVICGPSGVGKGTLIKKLLNEFPNYF   51 (218)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTTE
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCE
T ss_conf             99999999999999999997198776


No 189
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10
Probab=83.63  E-value=1.6  Score=19.77  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             999999999999975987433799997078862578999999972
Q gi|254781225|r  481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       481 e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +..+..++.+..++- .+..-.-+=++|+.+.|||||++-+...+
T Consensus        37 ~~~~~~~~ll~~~~~-~~~~~~~IgItG~PGaGKSTLi~~L~~~~   80 (341)
T 2p67_A           37 RHQALSTQLLDAIMP-YCGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             HHHHHHHHHHHHHGG-GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             318999999998752-26985289732899998999999999998


No 190
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.47  E-value=0.65  Score=22.32  Aligned_cols=15  Identities=40%  Similarity=0.592  Sum_probs=5.0

Q ss_pred             EEEEECCCCCHHHHH
Q ss_conf             999707886257899
Q gi|254781225|r  504 IHIRGVGGSGKSTLM  518 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~  518 (789)
                      +++.|+.++|||-+.
T Consensus        13 i~I~GpTasGKs~La   27 (316)
T 3foz_A           13 IFLMGPTASGKTALA   27 (316)
T ss_dssp             EEEECCTTSCHHHHH
T ss_pred             EEEECCCCCCHHHHH
T ss_conf             999898832799999


No 191
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.39  E-value=0.76  Score=21.88  Aligned_cols=27  Identities=19%  Similarity=0.238  Sum_probs=23.0

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             379999707886257899999997233
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      -+++++.|+.+.||||+.+.|..-...
T Consensus        16 G~livi~GPSG~GK~tL~~~L~~~~p~   42 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQPL   42 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             838999999999999999999863986


No 192
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A*
Probab=83.34  E-value=0.93  Score=21.32  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             337999970788625789999999723
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ..-++++.|+.++||||++..+...+.
T Consensus       135 ~~Glilv~GpTGSGKTTtl~a~l~~~~  161 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             697599987999748999999999841


No 193
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=83.31  E-value=1.4  Score=20.08  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHH-C-CC----HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             47899999888-7-99----999999999999997598743379999707886257899999997233
Q gi|254781225|r  466 SQEFLDLVSGY-F-ES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       466 ~p~~~~~l~~~-~-~d----~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ...+.+.|..= . |.    +|+.+.|++    ..-+..+.-..++++|-.++||||+.+.|..-|-.
T Consensus       359 gt~iR~~L~~G~~~P~~f~rpeV~~~L~~----~~~p~~~~g~~iw~tGLsGsGKTTia~~l~~~L~~  422 (573)
T 1m8p_A          359 GTELRRRLRSGAHIPEWFSYPEVVKILRE----SNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQ  422 (573)
T ss_dssp             HHHHHHHHHHTCCCCTTTSCHHHHHHHHT----TSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCHHHCCHHHHHHHHH----HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             78999999779999947644778999998----62221478559999578998775999999999997


No 194
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.09  E-value=0.63  Score=22.44  Aligned_cols=42  Identities=14%  Similarity=0.206  Sum_probs=29.1

Q ss_pred             CCCCEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH---HCCCC
Q ss_conf             6884111799999999999850466755545256899998---63542
Q gi|254781225|r  704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK---QKGFI  748 (789)
Q Consensus       704 ~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~s~~~~~~~l~---~~g~~  748 (789)
                      .........++++.|..+|+..+   ..+++.+.|...+.   ..|+.
T Consensus       301 ~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~L~~~glI  345 (386)
T 2qby_A          301 EENVVSTTGAVYETYLNICKKLG---VEAVTQRRVSDIINELDMVGIL  345 (386)
T ss_dssp             ----CEEHHHHHHHHHHHHHHHT---CCCCCHHHHHHHHHHHHHHTSE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHCCCC
T ss_conf             34788769999999999999809---9988899999999999977982


No 195
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=83.01  E-value=1.7  Score=19.61  Aligned_cols=44  Identities=20%  Similarity=0.217  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             999999999999975987433799997078862578999999972
Q gi|254781225|r  481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       481 e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +.....++.+..++ ..+..-.-+=++|+.+.|||||++-+...+
T Consensus        36 ~~~~~~~~l~~~~~-~~~~~~~~IgItG~PGaGKSTLi~~L~~~~   79 (337)
T 2qm8_A           36 DHRAAVRDLIDAVL-PQTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             HHHHHHHHHHHHHG-GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             34899999999764-206882599523899988999999999997


No 196
>1yj5_A 5' polynucleotide kinase-3' phosphatase catalytic domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: c.108.1.9 c.37.1.1
Probab=82.70  E-value=0.78  Score=21.80  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=21.0

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             74337999970788625789999999
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +..+.++++.|..++|||||.+-+..
T Consensus       222 ~~~~~liilvG~PGSGKST~a~~~~~  247 (383)
T 1yj5_A          222 SPNPEVVVAVGFPGAGKSTFIQEHLV  247 (383)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf             89975999967888871489999732


No 197
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=82.46  E-value=1  Score=21.10  Aligned_cols=29  Identities=24%  Similarity=0.213  Sum_probs=23.3

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             37999970788625789999999723300
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      -+|+.+-|.-|+||||+.+.|...|....
T Consensus         4 G~~I~ieG~dGsGKtT~~~~L~~~l~~~~   32 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESIPANT   32 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTSCGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             73899989988859999999999984689


No 198
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 2zi3_A* ...
Probab=82.28  E-value=0.5  Score=23.09  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=24.3

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             33799997078862578999999972330003442
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE  534 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~  534 (789)
                      .-+++.+-|.-|.||||+++.|..-|..+.+...+
T Consensus        23 ~~k~I~IeG~~GsGKST~~~~L~~~l~~~~~~~e~   57 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEP   57 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEECCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99989998998885999999999997348985766


No 199
>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=82.25  E-value=0.97  Score=21.19  Aligned_cols=29  Identities=28%  Similarity=0.291  Sum_probs=23.7

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             33799997078862578999999972330
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      .-+|+.+.|.-|+||||....|..-|...
T Consensus         8 kG~~I~ieG~dGsGKST~~~~L~~~L~~~   36 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAA   36 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             85599998998888999999999999867


No 200
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.22  E-value=0.85  Score=21.55  Aligned_cols=32  Identities=34%  Similarity=0.483  Sum_probs=23.8

Q ss_pred             CCCCEEEEEE-ECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             7433799997-0788625789999999723300
Q gi|254781225|r  498 NKAQRFIHIR-GVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       498 ~~~~~~~~~~-G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      ++...+.|.+ ||.++||||+...|..-||=.+
T Consensus        12 ~k~~~i~IaIDGPagsGKsT~Ak~LAk~lg~~~   44 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTY   44 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEE
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             454673899889997788999999999939958


No 201
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=82.21  E-value=1.1  Score=20.92  Aligned_cols=23  Identities=43%  Similarity=0.743  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             99997078862578999999972
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      |+.+-|.-|+||||.+++|..-|
T Consensus         2 fI~ieG~dGsGKsT~~~~L~~~L   24 (197)
T 2z0h_A            2 FITFEGIDGSGKSTQIQLLAQYL   24 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998998888999999999999


No 202
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell membrane, GTP-binding, ION transport; 2.50A {Legionella pneumophila}
Probab=82.08  E-value=0.86  Score=21.52  Aligned_cols=20  Identities=30%  Similarity=0.409  Sum_probs=16.3

Q ss_pred             EEEEECCCCCHHHHHHHHHH
Q ss_conf             99970788625789999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +.+.|..+.|||||+|.|..
T Consensus         4 v~lvG~pNvGKSTL~N~L~g   23 (256)
T 3iby_A            4 ALLIGNPNCGKTTLFNALTN   23 (256)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHC
T ss_conf             99989999659999999958


No 203
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=82.02  E-value=1.2  Score=20.62  Aligned_cols=26  Identities=31%  Similarity=0.484  Sum_probs=21.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             99997078862578999999972330
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      .+-++|+-++||||+.++|..-+|-.
T Consensus         3 iIgltG~~gSGKsTva~~L~e~~g~~   28 (241)
T 1dek_A            3 LIFLSGVKRSGKDTTADFIMSNYSAV   28 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCE
T ss_conf             99977999888999999999975997


No 204
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=81.85  E-value=1.1  Score=20.79  Aligned_cols=27  Identities=26%  Similarity=0.438  Sum_probs=22.7

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             379999707886257899999997233
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      -+|+.+-|.-|+||||..+.|...|..
T Consensus         5 G~fIviEGidGsGKST~~~~L~~~L~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             728999899888499999999999971


No 205
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=81.78  E-value=0.84  Score=21.60  Aligned_cols=20  Identities=35%  Similarity=0.434  Sum_probs=12.7

Q ss_pred             EEEEEECCCCCHHHHHHHHH
Q ss_conf             99997078862578999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~  522 (789)
                      -+++.|.-++|||||+|.|.
T Consensus        26 ~I~VvG~~ssGKSsliNaLl   45 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIV   45 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHH
T ss_conf             59999188896999999996


No 206
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=81.75  E-value=0.75  Score=21.94  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=8.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             99997078862578999999972
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      .+++.|+.++|||-+.--|..-+
T Consensus         7 vi~I~GpTasGKt~la~~lA~~~   29 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHC
T ss_conf             89998977116999999999987


No 207
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=81.72  E-value=1  Score=21.07  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=22.2

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             999707886257899999997233000
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      +++.|+.++||||....|..-+|=..+
T Consensus         3 I~i~GpPGsGK~T~a~~La~~~~~~~i   29 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKYGIPHI   29 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf             999899999869999999999799478


No 208
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=81.63  E-value=1.9  Score=19.27  Aligned_cols=43  Identities=23%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             99999999999759874337999970788625789999999723300
Q gi|254781225|r  483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       483 ~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      .+.+++.++..=.- .....-+.+.|..+.||||++|.|   +|...
T Consensus        19 ~~~l~~~~~~~~~~-~~~~l~I~l~G~tg~GKSSliN~L---~g~~~   61 (262)
T 3def_A           19 QEKLIEFFGKLKQK-DMNSMTVLVLGKGGVGKSSTVNSL---IGEQV   61 (262)
T ss_dssp             HHHHHHHHHHHHHT-TCCEEEEEEEECTTSSHHHHHHHH---HTSCC
T ss_pred             HHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHH---HCCCE
T ss_conf             99999999998844-888888999899999599999998---47881


No 209
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi}
Probab=81.60  E-value=0.7  Score=22.12  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=22.8

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             74337999970788625789999999723
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      .+..-.+-+.|+-++|||||+++|..++-
T Consensus       379 i~~GEiv~i~G~NGsGKSTllk~L~G~~~  407 (607)
T 3bk7_A          379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf             78974899977888862429999708978


No 210
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=81.33  E-value=1.4  Score=20.05  Aligned_cols=30  Identities=30%  Similarity=0.548  Sum_probs=23.7

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             743379999707886257899999997233
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      +..|..+=++|.-++||||+.++++.-+|-
T Consensus         9 ~~~~mIIgiTG~igSGKStv~~~l~~~~g~   38 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGA   38 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             557779998789878899999999885399


No 211
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis}
Probab=81.24  E-value=1.2  Score=20.69  Aligned_cols=27  Identities=33%  Similarity=0.569  Sum_probs=20.6

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             379999707886257899999997233
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      -.|+.+-|.-|+||||..++|..-|..
T Consensus        21 gmfIviEG~dGsGKTT~~~~L~e~L~~   47 (223)
T 3ld9_A           21 SMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             649998899788699999999999997


No 212
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5}
Probab=81.19  E-value=1.1  Score=20.85  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=19.2

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             99970788625789999999723
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      +-++|.-|+||||+.+.++. +|
T Consensus         4 IgItG~iGSGKSTv~~~l~~-~G   25 (204)
T 2if2_A            4 IGLTGNIGCGKSTVAQMFRE-LG   25 (204)
T ss_dssp             EEEEECTTSSHHHHHHHHHH-TT
T ss_pred             EEEECCCCCCHHHHHHHHHH-CC
T ss_conf             99979997779999999998-79


No 213
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A*
Probab=81.07  E-value=1.1  Score=20.74  Aligned_cols=43  Identities=7%  Similarity=0.015  Sum_probs=29.5

Q ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHH---HEEECCCCEECHHHHHHHHHH
Q ss_conf             7889999999999842638888754---326268841117999999999
Q gi|254781225|r  675 IPEVCLKAKEEERQGTDTYQAWIDD---CCDIGENLWEESHSLAKSYSE  720 (789)
Q Consensus       675 ~p~~v~~a~~~y~~~~D~v~~fi~e---~ce~~~~~~~~~~~l~~~y~~  720 (789)
                      .|+.++.-.+.|.++..+|-.|..+   +.+++.+   ...++++.-..
T Consensus       185 ~~E~i~kRl~~Y~~~t~pvi~~y~~~~~l~~IDg~---~~~eV~~~I~~  230 (246)
T 2bbw_A          185 KPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGT---ETNKIWPYVYT  230 (246)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECS---CHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC---CHHHHHHHHHH
T ss_conf             89999999999999988999999846988998298---82899999999


No 214
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=80.99  E-value=0.79  Score=21.79  Aligned_cols=71  Identities=15%  Similarity=0.242  Sum_probs=40.5

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC-CCCCC-HHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCC
Q ss_conf             4337999970788625789999999723300-03442-67642012455556898899738980999934677
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAE-ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE  569 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~-~~~~~-~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~  569 (789)
                      ...-.++++|+.|.||+.+...|..-+|... -.++. ..+++.-++.....-+--+..+....+++++|.+.
T Consensus       121 ~~~g~~l~~GppG~GKT~la~alA~~~~~~~~~~~~~~~~~~~~~~G~~e~~~r~~~~~~~~~~i~fiDeid~  193 (331)
T 2vhj_A          121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKN  193 (331)
T ss_dssp             EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHHH
T ss_conf             8898078778999879999999999855799975720647777324768999999999987456255078888


No 215
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=80.93  E-value=1.2  Score=20.54  Aligned_cols=17  Identities=41%  Similarity=0.706  Sum_probs=6.5

Q ss_pred             EEEEEECCCCCHHHHHH
Q ss_conf             99997078862578999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMN  519 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~  519 (789)
                      ++|+.|.||.||||+.-
T Consensus        21 ~i~~~GKGGVGKTT~a~   37 (329)
T 2woo_A           21 WIFVGGKGGVGKTTTSC   37 (329)
T ss_dssp             EEEEECSSSSSHHHHHH
T ss_pred             EEEEECCCCCCHHHHHH
T ss_conf             99996998682999999


No 216
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=80.69  E-value=1.2  Score=20.51  Aligned_cols=10  Identities=10%  Similarity=0.318  Sum_probs=7.0

Q ss_pred             CCEEEEEEEC
Q ss_conf             9879999646
Q gi|254781225|r   63 QPLYAFDIDS   72 (789)
Q Consensus        63 ~glv~iDiD~   72 (789)
                      ..+++||.|.
T Consensus        45 ~rVLlvD~Dp   54 (334)
T 3iqw_A           45 RSVLLLSTDP   54 (334)
T ss_dssp             SCEEEEECCS
T ss_pred             CCEEEEECCC
T ss_conf             9489993899


No 217
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
Probab=79.97  E-value=2.1  Score=18.91  Aligned_cols=12  Identities=8%  Similarity=0.105  Sum_probs=6.4

Q ss_pred             CCEEEEEEECCC
Q ss_conf             337999970788
Q gi|254781225|r  500 AQRFIHIRGVGG  511 (789)
Q Consensus       500 ~~~~~~~~G~G~  511 (789)
                      ..++.+++|.++
T Consensus       344 ~~ki~~V~G~~~  355 (437)
T 3nrs_A          344 QGKVRAVVGMLS  355 (437)
T ss_dssp             -CCEEEEECCBT
T ss_pred             CCCEEEEECCCC
T ss_conf             798699964358


No 218
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PSI-2, protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=79.86  E-value=1.4  Score=20.13  Aligned_cols=29  Identities=24%  Similarity=0.159  Sum_probs=23.8

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             43379999707886257899999997233
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ..-...+++|+.|+|||++...+...++-
T Consensus         3 ~~~~i~Ll~G~PGtGKT~~a~~la~~l~~   31 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMANDEM   31 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHCGG
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             76569999899997099999999999685


No 219
>2wsm_A Hydrogenase expression/formation protein (HYPB); hydrogenase maturation factor, metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=79.80  E-value=1.4  Score=20.18  Aligned_cols=26  Identities=35%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             79999707886257899999997233
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ..+-+.|..+.|||||+|-|..-+..
T Consensus        31 ~~V~ivG~pnaGKSTLln~L~~~~~~   56 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIGN   56 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             49998889999899999999988614


No 220
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.37.1.8
Probab=79.64  E-value=1.1  Score=20.72  Aligned_cols=19  Identities=37%  Similarity=0.473  Sum_probs=16.8

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.+.|..+.|||||+|.|.
T Consensus         4 I~lvG~~n~GKStLin~L~   22 (190)
T 2cxx_A            4 IIFAGRSNVGKSTLIYRLT   22 (190)
T ss_dssp             EEEEEBTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9998999986999999996


No 221
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=79.61  E-value=0.29  Score=24.66  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             99997078862578999999972330
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      +.+++|+-+.||||+++.|..+|+..
T Consensus        29 ~tvi~G~NGsGKStil~Ai~~~L~g~   54 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTALIPD   54 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             28998899998799999999996687


No 222
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics, NPPSFA; HET: GDP; 1.96A {Thermus thermophilus HB8}
Probab=79.39  E-value=1.2  Score=20.48  Aligned_cols=19  Identities=37%  Similarity=0.473  Sum_probs=16.3

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.+.|..+.|||||++-|.
T Consensus         4 I~lvG~~nvGKSsLin~l~   22 (161)
T 2dyk_A            4 VVIVGRPNVGKSSLFNRLL   22 (161)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHH
T ss_conf             9998999971999999997


No 223
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=79.36  E-value=1.3  Score=20.44  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=18.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             33799997078862578999999
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      .+--+++.|..+.|||||++-|.
T Consensus        11 ~~~~i~ivG~~n~GKSsLin~l~   33 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLT   33 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
T ss_conf             89699999999999999999996


No 224
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 3.20A {Nostoc SP}
Probab=79.35  E-value=1.1  Score=20.89  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             43379999707886257899999997
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYA  524 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~l  524 (789)
                      ++-.-+.+.|..+.|||||+|.|..-
T Consensus       222 ~~G~~VaIvG~PNvGKSSL~N~L~~~  247 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             HCCCEEEEECCCCCCCCHHHHHHHCC
T ss_conf             64987999899987600898887556


No 225
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=79.27  E-value=1.3  Score=20.26  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=19.7

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             4337999970788625789999999
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      ..++-+.+.|..+.|||||++-+..
T Consensus         5 ~~~~~I~ivG~~~~GKTsLl~~l~~   29 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLT   29 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf             7989899998999888999999972


No 226
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=79.21  E-value=1.2  Score=20.52  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=16.3

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             37999970788625789999999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      ..-+.+.|..+.|||||+|.|..
T Consensus        69 ~l~iai~G~~n~GKSsliN~l~g   91 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHC
T ss_conf             72699988999879999999848


No 227
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, complete proteome, DNA binding, DNA repair; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=78.89  E-value=1.7  Score=19.50  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=38.9

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHH-----HCCCC-CCCCCHH----HHHH---CCCCCCCCCCH---------HHHHHC
Q ss_conf             3379999707886257899999997-----23300-0344267----6420---12455556898---------899738
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYA-----FGNQY-VINAEAS----DIMQ---NRPPEAGKANP---------SLIRLM  557 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~l-----lG~~~-~~~~~~~----~~~~---~~~~~~~~~~~---------~la~l~  557 (789)
                      ...+++++||-..||||++..+.-+     +|-+. +......    .++.   ...-..|..+|         -|-..-
T Consensus       606 ~~~~~iiTGpNm~GKSt~lrqial~~ilAqiG~~VPA~~a~i~~~d~Iftrig~~D~i~~g~STF~~Em~e~~~il~~at  685 (800)
T 1wb9_A          606 QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNAT  685 (800)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEHHHCEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             77179997788886128998999999999829947465548646476999936630234370649999999999998589


Q ss_pred             CCEEEEEECCCCCCCC
Q ss_conf             9809999346777601
Q gi|254781225|r  558 GSRIVIISETNENDEI  573 (789)
Q Consensus       558 g~r~~~~~E~~~~~~~  573 (789)
                      ..-|++++|...|--.
T Consensus       686 ~~SLviiDElGrGTst  701 (800)
T 1wb9_A          686 EYSLVLMDEIGRGTST  701 (800)
T ss_dssp             TTEEEEEESCCCCSSS
T ss_pred             CCEEEEEECCCCCCCH
T ss_conf             9829998059999985


No 228
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=78.51  E-value=2.4  Score=18.62  Aligned_cols=56  Identities=13%  Similarity=-0.087  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHC--CC----HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             78999998887--99----99999999999999759874337999970788625789999999723
Q gi|254781225|r  467 QEFLDLVSGYF--ES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       467 p~~~~~l~~~~--~d----~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      .++.+.|.+=.  |+    +|+.+    .+..+.-+..+.-..++++|-.++||||+.+.+..-|=
T Consensus       359 telr~~L~~G~~iP~~f~~peVa~----~L~~~~Ppr~kqG~~i~~tglsgsgkstia~~l~~~l~  420 (511)
T 1g8f_A          359 TELRRRLRVGGEIPEWFSYPEVVK----ILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             HHHHHHHHHTCCCCTTTSCHHHHH----HHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCCCCCCHHHHH----HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999999977698894418899999----99985488000737999807888888899999999999


No 229
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=78.48  E-value=1.4  Score=20.03  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=19.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             799997078862578999999972
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ..+-+.|..+.|||||+|.|..-.
T Consensus        39 ~~V~ivG~pnaGKSTLln~L~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             499998899998999999999984


No 230
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=78.37  E-value=1.3  Score=20.31  Aligned_cols=20  Identities=30%  Similarity=0.439  Sum_probs=17.0

Q ss_pred             EEEEEECCCCCHHHHHHHHH
Q ss_conf             99997078862578999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~  522 (789)
                      -+.+.|..+.|||||+|.|.
T Consensus        25 ~I~ivG~~nvGKSSLiN~L~   44 (195)
T 1svi_A           25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             99999999984999999996


No 231
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=78.35  E-value=2  Score=19.10  Aligned_cols=23  Identities=30%  Similarity=0.353  Sum_probs=18.3

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             33799997078862578999999
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      ...-+.+.|..+.|||||++.|.
T Consensus         6 k~~~I~lvG~~~vGKSSLin~l~   28 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALT   28 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
T ss_conf             54589999999987999999996


No 232
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A*
Probab=78.33  E-value=2.4  Score=18.58  Aligned_cols=58  Identities=17%  Similarity=0.159  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHC-CCHHH---------------HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             78999998887-99999---------------9999999999975987433799997078862578999999972
Q gi|254781225|r  467 QEFLDLVSGYF-ESEEV---------------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       467 p~~~~~l~~~~-~d~e~---------------~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ....++++.+. ||.-.               .+...+.+..+ .+.+..-.-+-++|+.+.|||||++-|..-+
T Consensus        30 ~~~~~l~~~~~~g~~~alar~it~~E~~~~~~~~~~~~~l~~~-~~~~~~~~rIgItG~PGaGKSTLi~~L~~~~  103 (355)
T 3p32_A           30 DTVDGLATAVRGGDRAALPRAITLVESTRPDHREQAQQLLLRL-LPDSGNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             -CHHHHHHHHHTTCTTHHHHHHHHHHCCSHHHHHHHHHHHHHH-GGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             7699999999879998999999998789952399999999987-3016897599742899998999999999999


No 233
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=78.27  E-value=2.4  Score=18.57  Aligned_cols=57  Identities=21%  Similarity=0.217  Sum_probs=35.6

Q ss_pred             HHHHHHHHHH-C-C----CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             7899999888-7-9----9999999999999997598743379999707886257899999997233
Q gi|254781225|r  467 QEFLDLVSGY-F-E----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       467 p~~~~~l~~~-~-~----d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ..+.+.|.+= . |    -+|+.+.|.+.    .-+.......++++|-.++||||+.+.|..-|..
T Consensus       333 t~lR~~L~~G~~pP~~f~rpEV~~~L~~~----~~~~~~~gmvIw~tGlsGsGKTTla~~l~~~L~~  395 (552)
T 3cr8_A          333 EEFQRRMRAGLKIPEWYSFPEVLAELHRQ----TPPRERQGFTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             HHHHHHHTTTCCCCTTTSCHHHHHHHHHH----SCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCCHHCCCHHHHHHHHH----HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             99999997699999120263278999987----5440477459999578999876999999999986


No 234
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=78.25  E-value=1.5  Score=19.86  Aligned_cols=17  Identities=41%  Similarity=0.794  Sum_probs=8.0

Q ss_pred             EEEEEEECCCCCHHHHH
Q ss_conf             79999707886257899
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLM  518 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~  518 (789)
                      +++|+.|.||.||||+.
T Consensus        19 r~i~~sGKGGvGKTT~a   35 (348)
T 3io3_A           19 KWIFVGGKGGVGKTTTS   35 (348)
T ss_dssp             SEEEEECSTTSSHHHHH
T ss_pred             EEEEEECCCCCHHHHHH
T ss_conf             59999689857299999


No 235
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=78.08  E-value=1.9  Score=19.30  Aligned_cols=83  Identities=19%  Similarity=0.231  Sum_probs=42.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHH-----HCCCC-CCCCCHHHHHH---CCC----CCCCCCCH---------HHHHHC
Q ss_conf             3379999707886257899999997-----23300-03442676420---124----55556898---------899738
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYA-----FGNQY-VINAEASDIMQ---NRP----PEAGKANP---------SLIRLM  557 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~l-----lG~~~-~~~~~~~~~~~---~~~----~~~~~~~~---------~la~l~  557 (789)
                      ...+++++|+-..||||++..+.-+     +|-|. +.+.....+..   .-+    -..|..+|         -|-..-
T Consensus       788 ~~~~~liTGPNmgGKST~LRqial~viLAQiG~~VPA~~a~i~~~D~IftRiga~D~i~~g~STF~vEm~e~~~IL~~at  867 (1022)
T 2o8b_B          788 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHAT  867 (1022)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEHHHCEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             62289997899886189999999999999809955166668436576999706500221370569999999999998589


Q ss_pred             CCEEEEEECCCCCCC------CCCCEEEEEE
Q ss_conf             980999934677760------1310024541
Q gi|254781225|r  558 GSRIVIISETNENDE------INAAKIKQMT  582 (789)
Q Consensus       558 g~r~~~~~E~~~~~~------~~~~~~K~lt  582 (789)
                      ..-|++++|...|--      +..+.++.|.
T Consensus       868 ~~SLVllDElGrGTst~dG~aIA~avle~L~  898 (1022)
T 2o8b_B          868 AHSLVLVDELGRGTATFDGTAIANAVVKELA  898 (1022)
T ss_dssp             TTCEEEEECTTTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9848998238899885789999999999998


No 236
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=77.90  E-value=1.6  Score=19.66  Aligned_cols=22  Identities=41%  Similarity=0.671  Sum_probs=16.2

Q ss_pred             EEEEECCCCCHHHHHHHHHHHH
Q ss_conf             9997078862578999999972
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +-+.|+-+.||||+++++...+
T Consensus       702 vai~G~nGaGKSTLlk~l~G~~  723 (986)
T 2iw3_A          702 IAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEECSCCCHHHHHHHHHHTTSS
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
T ss_conf             9853788877689999861756


No 237
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=77.88  E-value=1.4  Score=20.22  Aligned_cols=19  Identities=26%  Similarity=0.576  Sum_probs=15.5

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.+.|..+.|||||+|.|.
T Consensus         8 I~lvG~~nvGKStLin~l~   26 (258)
T 3a1s_A            8 VALAGCPNVGKTSLFNALT   26 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999998999999995


No 238
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=77.86  E-value=1.3  Score=20.43  Aligned_cols=21  Identities=38%  Similarity=0.724  Sum_probs=17.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHH
Q ss_conf             799997078862578999999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      +..++.|+.+-|||||+|.|.
T Consensus       170 k~sv~~G~SGVGKSSLiN~L~  190 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAIN  190 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHCCC
T ss_conf             859999479876888975238


No 239
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell membrane, GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A*
Probab=77.44  E-value=1.5  Score=19.96  Aligned_cols=19  Identities=42%  Similarity=0.578  Sum_probs=13.6

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.+.|..+.|||||+|.|.
T Consensus         6 I~lvG~~nvGKSTLin~L~   24 (274)
T 3i8s_A            6 IGLIGNPNSGKTTLFNQLT   24 (274)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999899997999999996


No 240
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=77.16  E-value=1.7  Score=19.61  Aligned_cols=17  Identities=53%  Similarity=0.601  Sum_probs=7.6

Q ss_pred             EEEEECCCCCHHHHHHH
Q ss_conf             99970788625789999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNL  520 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~  520 (789)
                      +-+.|..+.|||||+|.
T Consensus        11 VaivG~pN~GKSTL~N~   27 (301)
T 1ega_A           11 IAIVGRPNVGKSTLLNK   27 (301)
T ss_dssp             EEEECSSSSSHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHH
T ss_conf             99998999989999999


No 241
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=77.14  E-value=1.6  Score=19.68  Aligned_cols=24  Identities=38%  Similarity=0.574  Sum_probs=19.2

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             9999707886257899999997233
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      .+-++|.-|+||||+.++++. +|-
T Consensus         4 iIgitG~igSGKStv~~~l~~-~G~   27 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD-LGV   27 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCC
T ss_conf             999889987669999999998-899


No 242
>2o8b_A DNA mismatch repair protein MSH2; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 2o8e_A*
Probab=76.96  E-value=1.9  Score=19.23  Aligned_cols=25  Identities=32%  Similarity=0.284  Sum_probs=20.1

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             3379999707886257899999997
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYA  524 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~l  524 (789)
                      .+.+++++||-..||||++..+.-+
T Consensus       661 ~~~~~liTGpNmgGKSt~Lr~i~l~  685 (934)
T 2o8b_A          661 KQMFHIITGPNMGGKSTYIRQTGVI  685 (934)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf             4521587778877606799899999


No 243
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=76.96  E-value=2.6  Score=18.33  Aligned_cols=24  Identities=38%  Similarity=0.473  Sum_probs=13.0

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             999970788625789999999723
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      -+.+.|+-+.||||+++.|..-+|
T Consensus       172 rI~i~G~~stGKTTL~~~L~~~~~  195 (365)
T 1lw7_A          172 TVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899978887777899999999969


No 244
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=76.90  E-value=1.1  Score=20.74  Aligned_cols=25  Identities=44%  Similarity=0.679  Sum_probs=20.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             9999707886257899999997233
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ++.+-|.-|+||||+++.|..-|..
T Consensus         2 ~I~ieG~dGsGKST~~~~L~e~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             8999899878999999999999987


No 245
>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=76.72  E-value=2.6  Score=18.32  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=22.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             3379999707886257899999997233
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ...++-+.|.-|+||||+...|..-||-
T Consensus        13 ~~~iItI~g~~GsGKsTia~~LA~~Lg~   40 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGI   40 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             9979985799989979999999999498


No 246
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=76.71  E-value=1.8  Score=19.43  Aligned_cols=20  Identities=20%  Similarity=0.587  Sum_probs=11.5

Q ss_pred             EEEECCCCCCCCCCEEECCC
Q ss_conf             38804776888874575177
Q gi|254781225|r  134 YFVAYNIHPKTKKEYTWTTP  153 (789)
Q Consensus       134 q~V~~gshp~Tg~~Y~w~~~  153 (789)
                      +-|..|..|.|.|-|-|..+
T Consensus        65 F~v~~~~~~~T~Giw~~~~~   84 (592)
T 1f5n_A           65 FSLGSTVQSHTKGIWMWCVP   84 (592)
T ss_dssp             SCCCCSSSCCCCSEEEEEEE
T ss_pred             CCCCCCCCCCCCEEEEEEEC
T ss_conf             88788888878507887300


No 247
>2dpx_A GTP-binding protein RAD; GTPase, small-G, RGK, signal transduction, diabetes, signaling protein; HET: GDP; 1.80A {Homo sapiens} PDB: 2gjs_A*
Probab=76.68  E-value=1.9  Score=19.18  Aligned_cols=24  Identities=25%  Similarity=0.517  Sum_probs=17.9

Q ss_pred             CCCCEE-EEEEECCCCCHHHHHHHH
Q ss_conf             743379-999707886257899999
Q gi|254781225|r  498 NKAQRF-IHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       498 ~~~~~~-~~~~G~G~nGKSt~~~~l  521 (789)
                      +.++.| +++.|..+.|||+|++-+
T Consensus         3 s~~~ifKi~lvG~~~vGKSsli~~~   27 (174)
T 2dpx_A            3 SDESVYKVLLLGAPGVGKSALARIF   27 (174)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf             8376889999999995899999999


No 248
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=76.65  E-value=2.2  Score=18.85  Aligned_cols=31  Identities=26%  Similarity=0.371  Sum_probs=21.2

Q ss_pred             HHHCCCCC-CCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             99759874-33799997078862578999999
Q gi|254781225|r  492 MALLGGNK-AQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       492 ~~l~g~~~-~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      ..|++... .+.=+++.|..+.|||+|++-+.
T Consensus        12 ~g~~p~~~k~~~kI~ivG~~~~GKTsLi~~l~   43 (188)
T 1zd9_A           12 SGLVPRGSKEEMELTLVGLQYSGKTTFVNVIA   43 (188)
T ss_dssp             -------CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             88787888873399999999999899999997


No 249
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=76.55  E-value=1.7  Score=19.60  Aligned_cols=20  Identities=35%  Similarity=0.479  Sum_probs=16.4

Q ss_pred             EEEEECCCCCHHHHHHHHHH
Q ss_conf             99970788625789999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +++.|.++.|||+|++-+..
T Consensus        11 i~viG~~~vGKSsli~~~~~   30 (182)
T 1ky3_A           11 VIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99999899598999999970


No 250
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydrolase; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=76.37  E-value=1.9  Score=19.21  Aligned_cols=29  Identities=28%  Similarity=0.517  Sum_probs=23.1

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             43379999707886257899999997233
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ..++++|..|.||-||||+.-.+...+-.
T Consensus       325 ~~~~i~~~~gKGGVGKTtva~~lA~~la~  353 (589)
T 1ihu_A          325 NEHGLIMLMGKGGVGKTTMAAAIAVRLAD  353 (589)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             58679996689993289999999999986


No 251
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=76.05  E-value=2.1  Score=18.98  Aligned_cols=156  Identities=13%  Similarity=0.117  Sum_probs=72.9

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHH-----HCCCCC-CCCCHH----HHHH---CCCCCCCCCCH---------HHHHHCC
Q ss_conf             379999707886257899999997-----233000-344267----6420---12455556898---------8997389
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYA-----FGNQYV-INAEAS----DIMQ---NRPPEAGKANP---------SLIRLMG  558 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~l-----lG~~~~-~~~~~~----~~~~---~~~~~~~~~~~---------~la~l~g  558 (789)
                      +.+++++|+-..|||||+..+.-+     +|-+-- ......    .++.   ......|..+|         -|-..-.
T Consensus       576 ~~~~iITGpNm~GKST~LRqval~~iLAqiG~~VPA~~a~~~~~d~Iftrig~~D~i~~g~STF~~Em~e~~~IL~~at~  655 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATE  655 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             43799988887760999999999999998098388421296066879999476324343756399999999999985899


Q ss_pred             CEEEEEECCCCCCCCCC------CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             80999934677760131------002454159858732104786068714528999738863426798416646899965
Q gi|254781225|r  559 SRIVIISETNENDEINA------AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF  632 (789)
Q Consensus       559 ~r~~~~~E~~~~~~~~~------~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~iipF  632 (789)
                      .-|++++|...|--..+      +.++.|..          .+.        .. +.+-|.+.+.+..   ..++....|
T Consensus       656 ~SLvliDElgrGTst~dG~aia~avle~L~~----------~~~--------~~-lfaTH~~eL~~l~---~~~v~~~h~  713 (765)
T 1ewq_A          656 NSLVLLDEVGRGTSSLDGVAIATAVAEALHE----------RRA--------YT-LFATHYFELTALG---LPRLKNLHV  713 (765)
T ss_dssp             TEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----------HTC--------EE-EEECCCHHHHTCC---CTTEEEEEE
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHHH----------CCC--------EE-EEECCCHHHHHCC---CCCCEEEEE
T ss_conf             8299994598899848999999999999985----------799--------79-9989718988435---576258999


Q ss_pred             CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf             8878887878334220120447999999999999987889887889999999999
Q gi|254781225|r  633 DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER  687 (789)
Q Consensus       633 ~~~~~~~d~~~~~~~~~~e~~~i~~w~l~g~~~~~~~g~~~~~p~~v~~a~~~y~  687 (789)
                      ...+.+....+..++..  +..--.+++   .-....|+    |+.|.+.-++..
T Consensus       714 ~~~~~~~~i~f~Ykl~~--G~~~~S~gi---~vA~~aG~----p~~vi~rA~~i~  759 (765)
T 1ewq_A          714 AAREEAGGLVFYHQVLP--GPASKSYGV---EVAAMAGL----PKEVVARARALL  759 (765)
T ss_dssp             EEECCSSSCEEEEEEEE--SCCSSCCHH---HHHHHTTC----CHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEEEEE--CCCCCHHHH---HHHHHHCC----CHHHHHHHHHHH
T ss_conf             99997892618889846--899870999---99999691----999999999999


No 252
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A*
Probab=76.00  E-value=2.4  Score=18.52  Aligned_cols=33  Identities=30%  Similarity=0.206  Sum_probs=22.2

Q ss_pred             HHHHHCCCCCCCE-EEEEEECCCCCHHHHHHHHH
Q ss_conf             9999759874337-99997078862578999999
Q gi|254781225|r  490 VGMALLGGNKAQR-FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       490 ~g~~l~g~~~~~~-~~~~~G~G~nGKSt~~~~l~  522 (789)
                      +|.++.+...... =+++.|..+.|||+|++-+.
T Consensus         3 ~~~~~~~~~~~~~~KI~vvG~~~vGKTSli~r~~   36 (179)
T 1z0f_A            3 LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFT   36 (179)
T ss_dssp             --------CCSEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf             8878999886756799999999918999999997


No 253
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=76.00  E-value=0.88  Score=21.45  Aligned_cols=26  Identities=27%  Similarity=0.534  Sum_probs=17.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             79999707886257899999997233
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ..+-+.|..|+||||++++|..++-.
T Consensus      1060 e~vaIVG~SGSGKSTL~~lL~rl~~p 1085 (1284)
T 3g5u_A         1060 QTLALVGSSGCGKSTVVQLLERFYDP 1085 (1284)
T ss_dssp             SEEEEECSSSTTHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             99999899998699999999468768


No 254
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=75.57  E-value=2.8  Score=18.09  Aligned_cols=12  Identities=0%  Similarity=-0.172  Sum_probs=6.8

Q ss_pred             EEEECCCCCCCC
Q ss_conf             999738863426
Q gi|254781225|r  606 PFIVPNKHLFVR  617 (789)
Q Consensus       606 ~~~~~N~~P~~~  617 (789)
                      +|++|.|.|.+.
T Consensus       323 v~iTtt~~~~~~  334 (359)
T 2o5v_A          323 AIVTGTELAPGA  334 (359)
T ss_dssp             EEEEESSCCTTC
T ss_pred             EEEECCCCCCCC
T ss_conf             999878986640


No 255
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=75.46  E-value=1.8  Score=19.41  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=18.2

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             79999707886257899999997233
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      +..++.|+.|-||||++|.|   ++.
T Consensus       166 k~sv~~G~SGVGKSSLIN~L---~~~  188 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRL---TGE  188 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHH---HSC
T ss_pred             CEEEEECCCCCCHHHHHHHC---CHH
T ss_conf             75999898996787887613---727


No 256
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=75.15  E-value=1.9  Score=19.28  Aligned_cols=19  Identities=32%  Similarity=0.518  Sum_probs=15.8

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||++++.+.
T Consensus        23 I~l~G~~~vGKSSLi~~l~   41 (196)
T 3llu_A           23 ILLMGLRRSGKSSIQKVVF   41 (196)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999989989999999996


No 257
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome assembly, GTP-binding; HET: GNP; 1.90A {Aquifex aeolicus}
Probab=75.13  E-value=2  Score=19.09  Aligned_cols=20  Identities=40%  Similarity=0.582  Sum_probs=11.8

Q ss_pred             EEEEEECCCCCHHHHHHHHH
Q ss_conf             99997078862578999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~  522 (789)
                      ++-+.|..+.|||||+|.|.
T Consensus        12 ~VaivG~pNvGKStLiN~L~   31 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLL   31 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             89999999984999999996


No 258
>3lx5_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTP-binding, GTPase, transmembran nucleotide-binding; HET: AGO; 1.90A {Streptococcus thermophilus} PDB: 3lx8_A*
Probab=75.07  E-value=1.8  Score=19.41  Aligned_cols=19  Identities=47%  Similarity=0.690  Sum_probs=11.2

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.+.|..+.|||||+|.|.
T Consensus         6 ValvG~pNvGKStL~N~L~   24 (272)
T 3lx5_A            6 IALIGNPNSGKTSLFNLIT   24 (272)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999999999999996


No 259
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=75.04  E-value=2.1  Score=19.02  Aligned_cols=11  Identities=27%  Similarity=0.162  Sum_probs=4.9

Q ss_pred             HHCCCEEEEEE
Q ss_conf             73898099993
Q gi|254781225|r  555 RLMGSRIVIIS  565 (789)
Q Consensus       555 ~l~g~r~~~~~  565 (789)
                      .|.+.-++++.
T Consensus       395 ~L~~~ilAvs~  405 (460)
T 2npi_A          395 NLQHAIIAITF  405 (460)
T ss_dssp             HHTTEEEEEES
T ss_pred             HHHCCEEEEEE
T ss_conf             86086899994


No 260
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium LT2}
Probab=75.00  E-value=1.7  Score=19.63  Aligned_cols=21  Identities=38%  Similarity=0.585  Sum_probs=17.3

Q ss_pred             EEEEEEECCCCCHHHHHHHHH
Q ss_conf             799997078862578999999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      +..++.|+.|-|||||+|.|.
T Consensus       216 ktsv~~G~SGVGKSSLiN~L~  236 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALL  236 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHC
T ss_conf             769998888765889997744


No 261
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=74.71  E-value=2  Score=19.06  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=17.8

Q ss_pred             CEEEEEEECCCCCHHHHHHHHH
Q ss_conf             3799997078862578999999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.=+++.|..+.|||+|++-+.
T Consensus         7 e~ki~lvG~~~vGKSsLi~~l~   28 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQ   28 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
T ss_conf             0089999999989899999997


No 262
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=74.68  E-value=2  Score=19.05  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=12.8

Q ss_pred             CEEEEEEECCCCCHHHHHHHHH
Q ss_conf             3799997078862578999999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      ..+.+++|+++.|||+|+--|.
T Consensus        30 g~~~~i~G~~G~GKS~l~l~la   51 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLA   51 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
T ss_conf             9689998089898999999999


No 263
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum 3D7}
Probab=74.43  E-value=1.8  Score=19.43  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=18.9

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             33799997078862578999999
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      ....+++.|..+.|||||+|.|.
T Consensus        28 ~~~~V~lvG~~nvGKSSLln~L~   50 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVS   50 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
T ss_conf             99999999999985999999984


No 264
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=74.39  E-value=2  Score=19.07  Aligned_cols=19  Identities=37%  Similarity=0.602  Sum_probs=15.9

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.+.|..+.|||||+|.|.
T Consensus         7 I~ivG~~nvGKSSLin~l~   25 (172)
T 2gj8_A            7 VVIAGRPNAGKSSLLNALA   25 (172)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999989999999999996


No 265
>1m2o_B GTP binding, GTP-binding protein SAR1; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=74.18  E-value=2.3  Score=18.64  Aligned_cols=24  Identities=25%  Similarity=0.493  Sum_probs=17.9

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             337999970788625789999999
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      .+.=+++.|..+.|||||++-+..
T Consensus        22 k~~KI~ivG~~~~GKTsLl~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf             843899999999998999999928


No 266
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=74.16  E-value=2.7  Score=18.24  Aligned_cols=25  Identities=32%  Similarity=0.386  Sum_probs=18.4

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             8743379999707886257899999
Q gi|254781225|r  497 GNKAQRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       497 ~~~~~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      .+..+.=+++.|..+.|||+|++-+
T Consensus         2 ~~~r~~Ki~vvG~~~vGKTsLi~~~   26 (178)
T 2hxs_A            2 SHMRQLKIVVLGDGASGKTSLTTCF   26 (178)
T ss_dssp             CCCCEEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHH
T ss_conf             9887889999998997989999999


No 267
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=73.83  E-value=3.1  Score=17.81  Aligned_cols=23  Identities=30%  Similarity=0.482  Sum_probs=19.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             99970788625789999999723
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      +++.|..+-|||||+|.|.....
T Consensus       163 v~vvG~~NvGKSTLIN~L~~~~~  185 (368)
T 3h2y_A          163 VYVVGCTNVGKSTFINRMIKEFS  185 (368)
T ss_dssp             EEEEEBTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
T ss_conf             99975787563788888765303


No 268
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens}
Probab=73.55  E-value=3.2  Score=17.76  Aligned_cols=25  Identities=32%  Similarity=0.515  Sum_probs=14.6

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             7999970788625789999999723
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      +-++++||.|.||+.+...|...+|
T Consensus        64 k~iLl~GPpGtGKT~iAralA~~lg   88 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             7799989999779999999999748


No 269
>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB: 2onj_A*
Probab=73.47  E-value=0.72  Score=22.06  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=24.2

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             4337999970788625789999999723300
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      .......++|+-|.||||++++|..++-.+.
T Consensus       365 ~~G~~i~ivG~sGsGKSTLl~ll~g~~~~~~  395 (578)
T 2hyd_A          365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTS  395 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf             7887657889888418999999647888998


No 270
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=73.43  E-value=2.8  Score=18.12  Aligned_cols=28  Identities=32%  Similarity=0.453  Sum_probs=22.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             9999707886257899999997233000
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQYV  530 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~~~  530 (789)
                      .+-+-|+.++||||+..+|..-||=.+.
T Consensus         7 IIaIDGPagSGKST~ak~LA~~Lg~~~l   34 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEALQWHLL   34 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             8997789867889999999999199765


No 271
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=72.99  E-value=2.5  Score=18.49  Aligned_cols=19  Identities=37%  Similarity=0.447  Sum_probs=16.1

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus         6 IvvlG~~~vGKTSli~~~~   24 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFV   24 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999968899999998


No 272
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A*
Probab=72.95  E-value=2.5  Score=18.50  Aligned_cols=20  Identities=30%  Similarity=0.476  Sum_probs=16.3

Q ss_pred             EEEEECCCCCHHHHHHHHHH
Q ss_conf             99970788625789999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +++.|.++.|||+|++.+..
T Consensus        32 I~ivG~~~vGKTSLi~~l~~   51 (191)
T 1oix_A           32 VVLIGDSGVGKSNLLSRFTR   51 (191)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99999999398999999972


No 273
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=72.79  E-value=3  Score=17.95  Aligned_cols=30  Identities=27%  Similarity=0.297  Sum_probs=22.2

Q ss_pred             HHCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             975987433799997078862578999999
Q gi|254781225|r  493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       493 ~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      +..|.....+=+++.|..+.|||+|++-+.
T Consensus         4 ~~~~~k~~~~Ki~vvG~~~vGKTsLi~~~~   33 (181)
T 2efe_B            4 AAAGNKSINAKLVLLGDVGAGKSSLVLRFV   33 (181)
T ss_dssp             ------CEEEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             768998207599999989968999999998


No 274
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=72.67  E-value=2.1  Score=18.98  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=18.6

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             3799997078862578999999972330
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      +.=+++.|..+.|||+|++-   +.|++
T Consensus        18 e~kI~ivG~~~~GKSSLl~~---l~~~~   42 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKK---FNGED   42 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHH---HTTCC
T ss_pred             EEEEEEECCCCCCHHHHHHH---HHCCC
T ss_conf             34999999999998999999---95788


No 275
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=72.61  E-value=3.2  Score=17.76  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=17.7

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             43379999707886257899999
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      ..+.=+++.|..+.|||+|++-+
T Consensus        14 ~~~~kI~vvG~~~~GKTsLi~~l   36 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQL   36 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHH
T ss_conf             97879999999999899999999


No 276
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=72.06  E-value=3.4  Score=17.53  Aligned_cols=44  Identities=18%  Similarity=0.187  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             9999999999999759874337999970788625789999999723
Q gi|254781225|r  481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       481 e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      .+++-+.++++-.  ..+....+++++|+.|.||||+.+-|..-+-
T Consensus         6 ~l~~~v~~iL~rr--~knN~R~~ViLvG~pGvGKTaI~egLA~~I~   49 (359)
T 2ga8_A            6 KLADDVLQLLDNR--IEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHHHHHT--TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--HCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9999999998776--3489876769984999889999999999998


No 277
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=71.77  E-value=2.6  Score=18.38  Aligned_cols=19  Identities=26%  Similarity=0.510  Sum_probs=9.9

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.+.|..+.|||||+|.|.
T Consensus         6 ValvG~~nvGKSsL~n~L~   24 (271)
T 3k53_A            6 VALVGNPNVGKTTIFNALT   24 (271)
T ss_dssp             EEEEECSSSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999971999999996


No 278
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=71.76  E-value=3.1  Score=17.85  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=16.5

Q ss_pred             CEEEEEEECCCCCHHHHHHHH
Q ss_conf             379999707886257899999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      ..=+++.|..+.|||||++-+
T Consensus        25 ~~KIlilG~~~sGKTSll~~l   45 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHML   45 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHH
T ss_conf             118999999999889999999


No 279
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=71.73  E-value=2.4  Score=18.53  Aligned_cols=21  Identities=33%  Similarity=0.390  Sum_probs=16.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHH
Q ss_conf             799997078862578999999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      .-+.+.|..+.|||||++.|.
T Consensus         4 ~~V~lvG~~~~GKSsLi~~L~   24 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALT   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
T ss_conf             199999899998999999997


No 280
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=71.45  E-value=2  Score=19.17  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=21.4

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             99970788625789999999723300
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      +-+=|+.++||||+...|..-||=.+
T Consensus         6 IaIDGpagSGKsT~ak~LA~~l~~~~   31 (219)
T 2h92_A            6 IALDGPAAAGKSTIAKRVASELSMIY   31 (219)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf             99778986788999999999929927


No 281
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=71.41  E-value=2.7  Score=18.25  Aligned_cols=20  Identities=40%  Similarity=0.532  Sum_probs=16.8

Q ss_pred             EEEEECCCCCHHHHHHHHHH
Q ss_conf             99970788625789999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +++.|..+.|||+|++-+..
T Consensus        11 i~lvG~~~vGKSsli~rl~~   30 (207)
T 1vg8_A           11 VIILGDSGVGKTSLMNQYVN   30 (207)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHC
T ss_conf             99999799299999999961


No 282
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 2hcb_A*
Probab=71.21  E-value=3.1  Score=17.88  Aligned_cols=112  Identities=16%  Similarity=0.162  Sum_probs=52.8

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCC--CCCCCHHHHHHCCC--CCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEE
Q ss_conf             99970788625789999999723300--03442676420124--555568988997389809999346777601310024
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAFGNQY--VINAEASDIMQNRP--PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK  579 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~llG~~~--~~~~~~~~~~~~~~--~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K  579 (789)
                      ++++|+.|.|||-|+..|.+-+-...  +.-.+...+.....  ...+........+...-+++++|.+.-.        
T Consensus        40 l~l~G~~G~GKTHLl~Ai~~~~~~~~~~v~y~~~~~~~~~~~~a~~~~~~~~~~~~~~~~dlLiiDDi~~l~--------  111 (324)
T 1l8q_A           40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS--------  111 (324)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT--------
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCHHHHC--------
T ss_conf             898889999899999999999985499759944999999999998648789999885125640003066541--------


Q ss_pred             EEECCCEEEEEECCCCCCEE-EECCEEEEEECCCCCCCC-CCCCCEEEEEE
Q ss_conf             54159858732104786068-714528999738863426-79841664689
Q gi|254781225|r  580 QMTGGDCMTARLNYGNTYSE-SPASFTPFIVPNKHLFVR-NPDDAWWRRYI  628 (789)
Q Consensus       580 ~ltggD~i~ar~~~~~~~~~-~~p~~~~~~~~N~~P~~~-~~d~~~~rR~~  628 (789)
                         |.+.. .+.+| .-+.. ..-...++++++..|.-- ..+.-+..|+.
T Consensus       112 ---~~~~~-qe~lf-~l~n~~~~~~k~iiits~~~P~~l~~~~~~L~SRl~  157 (324)
T 1l8q_A          112 ---GKERT-QIEFF-HIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE  157 (324)
T ss_dssp             ---TCHHH-HHHHH-HHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH
T ss_pred             ---CCHHH-HHHHH-HHHHHHHHCCCCEEEECCCCHHHHCCCCHHHHHHHH
T ss_conf             ---55578-99999-999999870996898569885654132267887864


No 283
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural genomics, NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii OT3}
Probab=71.16  E-value=2.4  Score=18.61  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=18.4

Q ss_pred             EEEEEEECCCCCHHHHHHHHHH
Q ss_conf             7999970788625789999999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      ..+.+.|..+.|||||+|.|..
T Consensus       168 ~~V~i~G~pnvGKSSLin~l~~  189 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKALTT  189 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHHCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
T ss_conf             8899989999715159999838


No 284
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=70.86  E-value=3.2  Score=17.73  Aligned_cols=26  Identities=31%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             79999707886257899999997233
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      +.+-+.|..++||+||+.-|...|-.
T Consensus         5 ki~~I~G~~gSGKTTLi~~Li~~L~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             59999819999899999999999997


No 285
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=70.48  E-value=3.7  Score=17.31  Aligned_cols=25  Identities=28%  Similarity=0.316  Sum_probs=18.7

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             4337999970788625789999999
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      ....=+++.|..+.|||+|++.+..
T Consensus         7 ~~~~Ki~ivG~~~vGKSsLi~~~~~   31 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQ   31 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf             8867999999799899999999970


No 286
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=70.37  E-value=3.6  Score=17.42  Aligned_cols=24  Identities=38%  Similarity=0.505  Sum_probs=19.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             7999970788625789999999723
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ..+-++|.-++||||+.+++.. +|
T Consensus         5 ~IIgItG~igSGKStva~~l~~-~G   28 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD-LG   28 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH-TT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CC
T ss_conf             6999879887879999999998-79


No 287
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=70.29  E-value=3.8  Score=17.28  Aligned_cols=22  Identities=23%  Similarity=0.447  Sum_probs=16.9

Q ss_pred             CEEEEEEECCCCCHHHHHHHHH
Q ss_conf             3799997078862578999999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.=+++.|..+.|||+|++-+.
T Consensus        16 ~~kI~liG~~~~GKTsli~~l~   37 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFS   37 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
T ss_conf             6799999999988799999997


No 288
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=70.10  E-value=3.1  Score=17.79  Aligned_cols=20  Identities=30%  Similarity=0.449  Sum_probs=16.4

Q ss_pred             EEEEECCCCCHHHHHHHHHH
Q ss_conf             99970788625789999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +++.|..+.|||+|++.+..
T Consensus        13 I~v~G~~~vGKTsli~~l~~   32 (186)
T 2bme_A           13 FLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99999899499999999983


No 289
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=70.04  E-value=3.8  Score=17.25  Aligned_cols=82  Identities=11%  Similarity=0.109  Sum_probs=45.0

Q ss_pred             HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCC---CCCCCCCHHH-HHHC-CCCCCCCCCHHHHHHCCCEEE
Q ss_conf             9999997598743379999707886257899999997233---0003442676-4201-245555689889973898099
Q gi|254781225|r  488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN---QYVINAEASD-IMQN-RPPEAGKANPSLIRLMGSRIV  562 (789)
Q Consensus       488 ~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~---~~~~~~~~~~-~~~~-~~~~~~~~~~~la~l~g~r~~  562 (789)
                      .+..|+-.-......-++++|+-|.|||.++..|.+-+-.   +.+.-..... +..- ..-..+.....+..+....+.
T Consensus       139 ~~~~~~~~~~~~~~~gl~l~G~~G~GKT~L~~ai~~~l~~~~~~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~dlL  218 (308)
T 2qgz_A          139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVL  218 (308)
T ss_dssp             HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEE
T ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf             99999984754678828998999985899999999999875797189985359999999998531478999986306502


Q ss_pred             EEECCCC
Q ss_conf             9934677
Q gi|254781225|r  563 IISETNE  569 (789)
Q Consensus       563 ~~~E~~~  569 (789)
                      +++|...
T Consensus       219 iiDDlg~  225 (308)
T 2qgz_A          219 ILDDIGA  225 (308)
T ss_dssp             EEETCCC
T ss_pred             HHHHHHC
T ss_conf             3356400


No 290
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=70.02  E-value=3.8  Score=17.24  Aligned_cols=22  Identities=18%  Similarity=0.188  Sum_probs=17.5

Q ss_pred             CEEEEEEECCCCCHHHHHHHHH
Q ss_conf             3799997078862578999999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      -.=+++.|..+.|||+|++-+.
T Consensus        11 l~KivvvG~~~vGKTsLi~~~~   32 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYT   32 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
T ss_conf             9899999999978899999997


No 291
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=69.76  E-value=1.9  Score=19.24  Aligned_cols=27  Identities=22%  Similarity=0.535  Sum_probs=18.5

Q ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             7598743379999707886257899999
Q gi|254781225|r  494 LLGGNKAQRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      +.+..++-+ +++.|..+.|||+|++-+
T Consensus        16 ~~p~~k~~k-i~ivG~~~vGKTsLi~~l   42 (189)
T 2x77_A           16 LLPADRKIR-VLMLGLDNAGKTSILYRL   42 (189)
T ss_dssp             TSCTTSCEE-EEEEEETTSSHHHHHHHT
T ss_pred             CCCCCCEEE-EEEECCCCCCHHHHHHHH
T ss_conf             588887889-999999998889999999


No 292
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=69.64  E-value=3.1  Score=17.84  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=18.5

Q ss_pred             EEEEECCCCCHHHHHHHHHHHH
Q ss_conf             9997078862578999999972
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +++.|..+-|||||+|.|..-.
T Consensus       165 v~vvG~~NvGKSTLiN~L~~~~  186 (369)
T 3ec1_A          165 VYVVGCTNVGKSTFINRIIEEA  186 (369)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9994688735889998775664


No 293
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=69.62  E-value=3.1  Score=17.84  Aligned_cols=20  Identities=25%  Similarity=0.194  Sum_probs=16.3

Q ss_pred             EEEEEECCCCCHHHHHHHHH
Q ss_conf             99997078862578999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~  522 (789)
                      =+++.|..+.|||+|++-+.
T Consensus        22 Kv~lvG~~~vGKTsLi~rl~   41 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFC   41 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             99999999909999999997


No 294
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=69.53  E-value=1.3  Score=20.26  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=15.9

Q ss_pred             CEEEEEEECCCCCHHHHHHHH
Q ss_conf             379999707886257899999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      .+..++.|+.|-|||||+|.|
T Consensus       173 ~k~sv~~G~SGVGKSSLiN~L  193 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAI  193 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHCC
T ss_conf             879999998985588897513


No 295
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58}
Probab=69.22  E-value=2  Score=19.08  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=18.0

Q ss_pred             EE-CCCCCHHHHHHHHHHHHCC
Q ss_conf             70-7886257899999997233
Q gi|254781225|r  507 RG-VGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       507 ~G-~G~nGKSt~~~~l~~llG~  527 (789)
                      +| +|.|||||...+|..+|-.
T Consensus       111 IaVTGTnGKTTTt~mi~~iL~~  132 (326)
T 3eag_A          111 LGVAGTHGKTTTASMLAWVLEY  132 (326)
T ss_dssp             EEEESSSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCEEHHHHHHHHHHH
T ss_conf             9994689955499999999986


No 296
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=69.10  E-value=3.6  Score=17.44  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=20.9

Q ss_pred             HCCCCCCCEEEEEEECCCCCHHHHH-HHHHHH
Q ss_conf             7598743379999707886257899-999997
Q gi|254781225|r  494 LLGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA  524 (789)
Q Consensus       494 l~g~~~~~~~~~~~G~G~nGKSt~~-~~l~~l  524 (789)
                      |-|+.....+.++.|+.+.|||+|. +++.+.
T Consensus        23 l~GGl~~g~~~~i~G~~G~GKT~l~~~~~~~~   54 (251)
T 2ehv_A           23 IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKG   54 (251)
T ss_dssp             TTTSEETTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             55898798599999789999899999999999


No 297
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluorescence, membrane, disease mutation, golgi stack, GTP- binding; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=69.09  E-value=3.4  Score=17.56  Aligned_cols=20  Identities=35%  Similarity=0.524  Sum_probs=16.5

Q ss_pred             EEEEECCCCCHHHHHHHHHH
Q ss_conf             99970788625789999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +++.|..+.|||+|++-+..
T Consensus         6 v~liG~~~vGKTSll~~l~~   25 (166)
T 2ce2_X            6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99999999799999999970


No 298
>1yzq_A Small GTP binding protein RAB6 isoform; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.78A {Homo sapiens} SCOP: c.37.1.8 PDB: 3cwz_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=69.06  E-value=3.6  Score=17.41  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=17.9

Q ss_pred             EEEEEEECCCCCHHHHHHHHHH
Q ss_conf             7999970788625789999999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      .=+++.|..+.|||+|++-+..
T Consensus         7 ~KI~vvG~~~vGKSsLi~~~~~   28 (170)
T 1yzq_A            7 FKLVFLGEQSVGKTSLITRFMY   28 (170)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
T ss_conf             8999999499799999999983


No 299
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=69.01  E-value=2.6  Score=18.32  Aligned_cols=10  Identities=10%  Similarity=-0.117  Sum_probs=3.3

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254781225|r  482 VMDYFTRCVG  491 (789)
Q Consensus       482 ~~~~l~~~~g  491 (789)
                      +++.....++
T Consensus       269 li~~~~~lL~  278 (363)
T 1jal_A          269 VIRAGYALLN  278 (363)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHC
T ss_conf             9999998819


No 300
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=68.98  E-value=1.4  Score=20.03  Aligned_cols=20  Identities=25%  Similarity=0.390  Sum_probs=16.5

Q ss_pred             EEEEEEECCCCCHHHHHHHH
Q ss_conf             79999707886257899999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l  521 (789)
                      .-+.+.|..+.|||||+|.|
T Consensus        27 ~~I~lvG~~nvGKSSLiN~L   46 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTL   46 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHH
T ss_conf             78999999999899999999


No 301
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=68.96  E-value=4  Score=17.10  Aligned_cols=44  Identities=20%  Similarity=0.294  Sum_probs=26.9

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             79999999999999999759874337999970788625789999999
Q gi|254781225|r  477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       477 ~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      ++-++.++.+.+++-. +.  ......+.++|.||-||||+...+.+
T Consensus       131 ~gr~~~~~~i~~~L~~-~~--~~~~~~v~I~GmgGiGKTtLA~~~~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDE-MC--DLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHH-HT--TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-CC--CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             2648999999999984-45--67856699876897886999999999


No 302
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A*
Probab=68.90  E-value=4  Score=17.09  Aligned_cols=46  Identities=20%  Similarity=0.277  Sum_probs=29.8

Q ss_pred             CHHHHHHHHHHHHHHHCCC-----CCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             9999999999999997598-----743379999707886257899999997
Q gi|254781225|r  479 SEEVMDYFTRCVGMALLGG-----NKAQRFIHIRGVGGSGKSTLMNLIKYA  524 (789)
Q Consensus       479 d~e~~~~l~~~~g~~l~g~-----~~~~~~~~~~G~G~nGKSt~~~~l~~l  524 (789)
                      +++++..+++.+.-.|...     ....+.++++|+.|.||+|++-=|.+.
T Consensus        78 ~~~~~~~l~~~L~~~l~~~~~~~~~~~~~vI~lvGptGvGKTTtiaKLAa~  128 (296)
T 2px0_A           78 EENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAI  128 (296)
T ss_dssp             TTTHHHHHHHHHHTTSCCGGGSCCCCCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             999999999999987044444434678888999899998889999999999


No 303
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* 2a5g_A* 2w83_A*
Probab=68.39  E-value=3.4  Score=17.54  Aligned_cols=19  Identities=32%  Similarity=0.608  Sum_probs=16.1

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus         3 i~ivG~~~vGKTsLi~~~~   21 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLK   21 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999988899999996


No 304
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=68.38  E-value=4.1  Score=17.02  Aligned_cols=19  Identities=26%  Similarity=0.338  Sum_probs=16.3

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|.++.|||+|++-+.
T Consensus         9 i~viG~~~vGKTsli~~~~   27 (170)
T 1r2q_A            9 LVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999949999999998


No 305
>3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome, procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo sapiens}
Probab=68.23  E-value=4.1  Score=17.00  Aligned_cols=10  Identities=0%  Similarity=-0.087  Sum_probs=6.1

Q ss_pred             CCEEEEEEEC
Q ss_conf             9879999646
Q gi|254781225|r   63 QPLYAFDIDS   72 (789)
Q Consensus        63 ~glv~iDiD~   72 (789)
                      ++++++++-.
T Consensus       186 ~~~~w~~~~~  195 (1263)
T 3iyt_A          186 GGVHWVSVGK  195 (1263)
T ss_dssp             TCEEEEEEES
T ss_pred             CCEEEEEECC
T ss_conf             8089999688


No 306
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A*
Probab=68.03  E-value=3.2  Score=17.78  Aligned_cols=19  Identities=26%  Similarity=0.496  Sum_probs=16.1

Q ss_pred             EEEEEECCCCCHHHHHHHH
Q ss_conf             9999707886257899999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l  521 (789)
                      =+++.|..+.|||+|++-+
T Consensus        31 KIvivG~~~vGKSSLi~~l   49 (192)
T 2b6h_A           31 RILMVGLDAAGKTTILYKL   49 (192)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
T ss_conf             9999999998689999999


No 307
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), structural genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=67.94  E-value=4.2  Score=16.96  Aligned_cols=26  Identities=31%  Similarity=0.585  Sum_probs=19.2

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             379999707886257899999997233
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ...+-++|.-++||||+.+.++. +|-
T Consensus        75 ~~IIGLTGgigSGKStva~~L~~-~G~  100 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN-LGA  100 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH-HTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-CCC
T ss_conf             98999878875219999999998-799


No 308
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=67.76  E-value=3.5  Score=17.46  Aligned_cols=20  Identities=25%  Similarity=0.481  Sum_probs=16.7

Q ss_pred             EEEEECCCCCHHHHHHHHHH
Q ss_conf             99970788625789999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +++.|..+.|||+|++-+..
T Consensus        28 IviiG~~~vGKSSLi~~l~~   47 (193)
T 2oil_A           28 VVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99999999589999999971


No 309
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=67.73  E-value=2.1  Score=18.96  Aligned_cols=25  Identities=32%  Similarity=0.284  Sum_probs=20.1

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             4337999970788625789999999
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      ++..-+.++|..+.|||||+|.|..
T Consensus       241 ~~g~~VaIvG~PNvGKSSL~N~L~g  265 (482)
T 1xzp_A          241 NRGLRMVIVGKPNVGKSTLLNRLLN  265 (482)
T ss_dssp             HHCEEEEEECCHHHHTCHHHHHHHH
T ss_pred             HCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf             5498799989999866899999858


No 310
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=67.37  E-value=3.9  Score=17.19  Aligned_cols=19  Identities=32%  Similarity=0.501  Sum_probs=16.2

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus        29 IvvlG~~~vGKTsLi~~l~   47 (201)
T 2ew1_A           29 IVLIGNAGVGKTCLVRRFT   47 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999959999999997


No 311
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=67.22  E-value=3.9  Score=17.21  Aligned_cols=22  Identities=9%  Similarity=-0.002  Sum_probs=8.8

Q ss_pred             EEEEEEECCCCHHHHHHHHHHH
Q ss_conf             7999964688125678999876
Q gi|254781225|r   65 LYAFDIDSKDEKTANTFKDTFE   86 (789)
Q Consensus        65 lv~iDiD~~d~~~~~~~~~~~~   86 (789)
                      ++.|=||+.++.+...+.+.+.
T Consensus         7 ~lrI~IEG~iGsGKTTl~~~L~   28 (334)
T 1p6x_A            7 IVRIYLDGVYGIGKSTTGRVMA   28 (334)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
T ss_conf             4899998887788999999999


No 312
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=67.22  E-value=3.4  Score=17.59  Aligned_cols=23  Identities=35%  Similarity=0.364  Sum_probs=19.0

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             37999970788625789999999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      ..-+.+.|..+.|||||+|.|..
T Consensus       179 ~~~ValvG~~NaGKSSLlNaLtg  201 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTG  201 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
T ss_conf             97799974556204188642020


No 313
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=67.14  E-value=3.7  Score=17.33  Aligned_cols=19  Identities=32%  Similarity=0.532  Sum_probs=15.7

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|.++.|||+|++-+.
T Consensus         8 i~vlG~~~vGKTsli~~~~   26 (199)
T 2f9l_A            8 VVLIGDSGVGKSNLLSRFT   26 (199)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999959899999998


No 314
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, disease mutation, mitochondrion, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=67.11  E-value=4.4  Score=16.85  Aligned_cols=30  Identities=20%  Similarity=0.239  Sum_probs=20.9

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHH-HHCC
Q ss_conf             74337999970788625789999999-7233
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKY-AFGN  527 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~-llG~  527 (789)
                      +..-.-+=++|+.+.|||||++-+.. +...
T Consensus        71 ~~~a~~IGitG~PGaGKStli~~l~~~~~~~  101 (349)
T 2www_A           71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTER  101 (349)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf             8870588621799988999999999999847


No 315
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=66.93  E-value=3.8  Score=17.22  Aligned_cols=19  Identities=32%  Similarity=0.522  Sum_probs=15.8

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.+.|..+.|||+|++-+.
T Consensus        13 I~vlG~~~vGKTSli~~~~   31 (180)
T 2g6b_A           13 VMLVGDSGVGKTCLLVRFK   31 (180)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999989969899999997


No 316
>2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2}
Probab=66.86  E-value=4.4  Score=16.82  Aligned_cols=28  Identities=29%  Similarity=0.453  Sum_probs=22.3

Q ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             7598743379999707886257899999
Q gi|254781225|r  494 LLGGNKAQRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      |-|+.....+.+++|+.+.|||+|+--+
T Consensus        16 l~GGl~~G~~~~i~G~~G~GKT~~~~~~   43 (235)
T 2w0m_A           16 IQGGIPQGFFIALTGEPGTGKTIFSLHF   43 (235)
T ss_dssp             GTTSEETTCEEEEECSTTSSHHHHHHHH
T ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf             5689889859999958998899999999


No 317
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell membrane, GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Probab=66.62  E-value=4.1  Score=17.03  Aligned_cols=18  Identities=22%  Similarity=0.340  Sum_probs=15.3

Q ss_pred             EEEEECCCCCHHHHHHHH
Q ss_conf             999707886257899999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l  521 (789)
                      +++.|..+.|||+|++-+
T Consensus        26 I~viG~~~vGKTsLi~rl   43 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRY   43 (191)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
T ss_conf             999999992889999999


No 318
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=66.57  E-value=2.4  Score=18.54  Aligned_cols=15  Identities=20%  Similarity=0.175  Sum_probs=8.3

Q ss_pred             HHHHHHCCCEEEEEC
Q ss_conf             899997798597735
Q gi|254781225|r   10 AKQAIHNGFKLIPLR   24 (789)
Q Consensus        10 ~~~~i~~G~~viPi~   24 (789)
                      |+.+.+.||.|.=-+
T Consensus        29 A~~l~~~G~~V~gsD   43 (469)
T 1j6u_A           29 ALHEFSNGNDVYGSN   43 (469)
T ss_dssp             HHHHHHTTCEEEEEC
T ss_pred             HHHHHHCCCEEEEEE
T ss_conf             999996899699982


No 319
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=66.46  E-value=4  Score=17.12  Aligned_cols=19  Identities=21%  Similarity=0.319  Sum_probs=16.0

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.+.|..+.|||+|++-+.
T Consensus         6 v~ilG~~~vGKSsLi~~l~   24 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999909899999996


No 320
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=66.33  E-value=4  Score=17.12  Aligned_cols=19  Identities=26%  Similarity=0.347  Sum_probs=15.6

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|.++.|||+|++-+.
T Consensus         9 I~vlG~~~vGKSsLi~r~~   27 (170)
T 1z08_A            9 VVLLGEGCVGKTSLVLRYC   27 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999959999999997


No 321
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=66.19  E-value=4  Score=17.07  Aligned_cols=19  Identities=37%  Similarity=0.545  Sum_probs=15.6

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus         6 i~vvG~~~vGKTsli~~~~   24 (167)
T 1c1y_A            6 LVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999989939999999996


No 322
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP- binding, coiled coil, cytoplasm, disease mutation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=66.19  E-value=3.4  Score=17.60  Aligned_cols=18  Identities=44%  Similarity=0.706  Sum_probs=14.6

Q ss_pred             EEEEECCCCCHHHHHHHH
Q ss_conf             999707886257899999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l  521 (789)
                      +++.|..+.|||+|++-+
T Consensus         5 ivivG~~~~GKTsli~~~   22 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQL   22 (184)
T ss_dssp             EEEESCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
T ss_conf             999993996889999999


No 323
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=66.03  E-value=4.6  Score=16.72  Aligned_cols=13  Identities=31%  Similarity=0.417  Sum_probs=6.3

Q ss_pred             CCCEEEEEECCCC
Q ss_conf             8980999934677
Q gi|254781225|r  557 MGSRIVIISETNE  569 (789)
Q Consensus       557 ~g~r~~~~~E~~~  569 (789)
                      ...-++++.|.+.
T Consensus       249 ~~~~~~~~~eidk  261 (444)
T 1g41_A          249 EQNGIVFIDEIDK  261 (444)
T ss_dssp             HHHCEEEEETGGG
T ss_pred             HHCCCCCCCHHHH
T ss_conf             7648766412455


No 324
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=65.87  E-value=2.9  Score=18.00  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=18.1

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             43379999707886257899999
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      ..+.=+++.|..+.|||+|++-+
T Consensus       163 ~k~~kIvliG~~~vGKSSLl~rl  185 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKL  185 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHH
T ss_conf             98129999999998599999999


No 325
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3}
Probab=65.86  E-value=4.6  Score=16.70  Aligned_cols=32  Identities=22%  Similarity=0.437  Sum_probs=21.9

Q ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHH-HHHHHH
Q ss_conf             75987433799997078862578999-999972
Q gi|254781225|r  494 LLGGNKAQRFIHIRGVGGSGKSTLMN-LIKYAF  525 (789)
Q Consensus       494 l~g~~~~~~~~~~~G~G~nGKSt~~~-~l~~ll  525 (789)
                      |-|+...-.+.+++|+.+.|||+|.- ++.+.+
T Consensus        16 l~GGi~~G~~~~i~G~~GsGKT~l~l~l~~~~~   48 (247)
T 2dr3_A           16 LHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL   48 (247)
T ss_dssp             TTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             468997983999997899889999999999998


No 326
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=65.74  E-value=2.6  Score=18.37  Aligned_cols=27  Identities=41%  Similarity=0.646  Sum_probs=19.4

Q ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             7598743379999707886257899999
Q gi|254781225|r  494 LLGGNKAQRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      +.+..+ +.=+++.|..+.|||+|++-+
T Consensus        12 ~~~~~k-~~Ki~lvG~~~vGKTsLi~~l   38 (183)
T 1moz_A           12 LWGSNK-ELRILILGLDGAGKTTILYRL   38 (183)
T ss_dssp             GTTCSS-CEEEEEEEETTSSHHHHHHHT
T ss_pred             HHCCCC-EEEEEEECCCCCCHHHHHHHH
T ss_conf             717896-789999999999889999798


No 327
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=65.57  E-value=4.1  Score=17.00  Aligned_cols=20  Identities=25%  Similarity=0.310  Sum_probs=15.7

Q ss_pred             EEEEEECCCCCHHHHHHHHH
Q ss_conf             99997078862578999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~  522 (789)
                      =+++.|..+.|||+|++-+.
T Consensus        30 Ki~v~G~~~vGKTsLi~~~~   49 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLC   49 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             99999999979899999996


No 328
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=65.42  E-value=4.7  Score=16.64  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             CCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             5987433799997078862578999999
Q gi|254781225|r  495 LGGNKAQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       495 ~g~~~~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      .+....+.-+++.|..+.|||+|++-+.
T Consensus       316 ~~~~~~~~ki~ivG~~~vGKTsli~~l~  343 (497)
T 3lvq_E          316 EGLSNKEMRILMLGLDAAGKTTILYKLK  343 (497)
T ss_dssp             ----CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred             HCCCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf             3346553189998988777333212120


No 329
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=65.06  E-value=4.4  Score=16.84  Aligned_cols=20  Identities=40%  Similarity=0.464  Sum_probs=16.3

Q ss_pred             EEEEECCCCCHHHHHHHHHH
Q ss_conf             99970788625789999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +++.|..+.|||+|++-+..
T Consensus        18 I~v~G~~~vGKTsli~~~~~   37 (195)
T 1x3s_A           18 ILIIGESGVGKSSLLLRFTD   37 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHC
T ss_conf             99999999698999999973


No 330
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP}
Probab=64.70  E-value=3.4  Score=17.55  Aligned_cols=10  Identities=30%  Similarity=0.886  Sum_probs=5.0

Q ss_pred             EEEEEEEEEC
Q ss_conf             6646899965
Q gi|254781225|r  623 WWRRYIVIPF  632 (789)
Q Consensus       623 ~~rR~~iipF  632 (789)
                      +-...++|.|
T Consensus       357 ~~~~~L~i~F  366 (374)
T 3igf_A          357 FQNNYLIISF  366 (374)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
T ss_conf             9899999998


No 331
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A*
Probab=64.68  E-value=2.3  Score=18.68  Aligned_cols=11  Identities=9%  Similarity=0.138  Sum_probs=4.6

Q ss_pred             EEEECCCEEEE
Q ss_conf             45415985873
Q gi|254781225|r  579 KQMTGGDCMTA  589 (789)
Q Consensus       579 K~ltggD~i~a  589 (789)
                      +.+..||.|-.
T Consensus       427 ~~~~~gDvVLi  437 (454)
T 2am1_A          427 ESLGAHDQILL  437 (454)
T ss_dssp             HHCCTTEEEEE
T ss_pred             HHCCCCCEEEE
T ss_conf             63799998999


No 332
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=64.68  E-value=4.1  Score=17.01  Aligned_cols=19  Identities=37%  Similarity=0.602  Sum_probs=15.4

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus         6 I~v~G~~~vGKTsLi~~~~   24 (172)
T 2erx_A            6 VAVFGAGGVGKSSLVLRFV   24 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999989999999996


No 333
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ protein, ATP-binding, DNA-binding; 4.35A {Sulfolobus solfataricus}
Probab=64.37  E-value=0.8  Score=21.73  Aligned_cols=129  Identities=17%  Similarity=0.225  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHCCCC---------CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC---CHHHHHH--CCCCCCC--C
Q ss_conf             99999999975987---------43379999707886257899999997233000344---2676420--1245555--6
Q gi|254781225|r  485 YFTRCVGMALLGGN---------KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA---EASDIMQ--NRPPEAG--K  548 (789)
Q Consensus       485 ~l~~~~g~~l~g~~---------~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~---~~~~~~~--~~~~~~~--~  548 (789)
                      .+...+-.+|.|..         +....+++.|.-+.|||.+++.+..+......++.   +..-++.  .+....|  .
T Consensus       302 ~vK~allL~l~~g~~~~~~~~~~r~~~~ill~Gd~~~~ks~ll~~~~~l~p~~~~~~~~~~~~~gl~~~~~~~~~~~~~~  381 (595)
T 3f9v_A          302 ELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYY  381 (595)
T ss_dssp             HHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCS
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEEEECCCCCEE
T ss_conf             79999999983898535788766774246652687530889999998757875521798777667630589842677445


Q ss_pred             CCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCC
Q ss_conf             8988997389809999346777601310024541598587321047860687145289997388634
Q gi|254781225|r  549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF  615 (789)
Q Consensus       549 ~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~  615 (789)
                      ..+...-+.....+.++|.+.-....-+.|.+..-...++..+. +.. .++.-.+.++.++|-.+.
T Consensus       382 ~~~G~l~la~~Gv~~iDE~~~~~~~~~~~L~eamE~~~isi~k~-g~~-~~l~~~~~iiaa~NP~~~  446 (595)
T 3f9v_A          382 LEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKA-GIV-AKLNARAAVIAAGNPKFG  446 (595)
T ss_dssp             EEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESS-SSE-EEECCCCEEEEEECCTTC
T ss_pred             ECCCHHHCCCCCCEEHHHHHHCCHHHHHHHHHHHHHEEEEECCC-CEE-EEECCCEEEEEECCCCCC
T ss_conf             33640100345630100375527778999998765118997266-517-874797699996378755


No 334
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=64.22  E-value=4.9  Score=16.50  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=17.6

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             33799997078862578999999
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      .+.=+++.|..+.|||+|++-+.
T Consensus         5 r~~Ki~vvG~~~vGKSSli~~~~   27 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFV   27 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCHHHHHHHHH
T ss_conf             68799999979968999999998


No 335
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 1xcg_B 1tx4_B* 1kmq_A* 1dpf_A* ...
Probab=64.14  E-value=4.9  Score=16.53  Aligned_cols=20  Identities=30%  Similarity=0.469  Sum_probs=16.3

Q ss_pred             EEEEEECCCCCHHHHHHHHH
Q ss_conf             99997078862578999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~  522 (789)
                      =+++.|..+.|||+|++-+.
T Consensus        27 KvvvlG~~~vGKTsLi~r~~   46 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFS   46 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             89999999979899999996


No 336
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=64.02  E-value=4.7  Score=16.63  Aligned_cols=33  Identities=12%  Similarity=0.089  Sum_probs=21.3

Q ss_pred             HHHHCCCCCCC-EEEEEEECCCCCHHHHHHHHHH
Q ss_conf             99975987433-7999970788625789999999
Q gi|254781225|r  491 GMALLGGNKAQ-RFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       491 g~~l~g~~~~~-~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +..|.++..+- .=+++.|..+.|||+|++-+..
T Consensus        11 ~~~~~p~~~~~~~KIvvvG~~~vGKTsLi~~~~~   44 (189)
T 2gf9_A           11 SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             ---CCCTTCSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHC
T ss_conf             6899998877478999999999698999889864


No 337
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=63.67  E-value=3.3  Score=17.68  Aligned_cols=17  Identities=41%  Similarity=0.593  Sum_probs=14.2

Q ss_pred             EEEEECCCCCHHHHHHH
Q ss_conf             99970788625789999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNL  520 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~  520 (789)
                      +++.|.++.|||+|++-
T Consensus        26 i~viG~~~vGKSsLi~~   42 (195)
T 3cbq_A           26 VMLVGESGVGKSTLAGT   42 (195)
T ss_dssp             EEEECSTTSSHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHH
T ss_conf             99998999799999999


No 338
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560}
Probab=63.67  E-value=4.5  Score=16.74  Aligned_cols=28  Identities=14%  Similarity=0.097  Sum_probs=21.5

Q ss_pred             CCEEEEEE-ECCCCCHHHHHHHHHHHHCC
Q ss_conf             33799997-07886257899999997233
Q gi|254781225|r  500 AQRFIHIR-GVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       500 ~~~~~~~~-G~G~nGKSt~~~~l~~llG~  527 (789)
                      -++++|.+ |+-|+||||+...|..-||=
T Consensus         4 mk~~iI~I~g~~GsGKstiak~LA~~Lg~   32 (201)
T 3fdi_A            4 MKQIIIAIGREFGSGGHLVAKKLAEHYNI   32 (201)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             87458986699999869999999999599


No 339
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=63.59  E-value=4.8  Score=16.60  Aligned_cols=18  Identities=33%  Similarity=0.302  Sum_probs=15.7

Q ss_pred             CEEEEEEECCCCCHHHHH
Q ss_conf             379999707886257899
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLM  518 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~  518 (789)
                      -..+.+.|+.+.||||+.
T Consensus        34 g~~v~i~G~SG~GKStl~   51 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETA   51 (205)
T ss_dssp             TEEEEEECCCTTTTHHHH
T ss_pred             CEEEEEECCCCCCHHHHH
T ss_conf             999999828999989999


No 340
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ...
Probab=63.58  E-value=4.6  Score=16.69  Aligned_cols=28  Identities=29%  Similarity=0.392  Sum_probs=19.4

Q ss_pred             CCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             5987433799997078862578999999
Q gi|254781225|r  495 LGGNKAQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       495 ~g~~~~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      .|....+.=+++.|..+.|||+|++-+.
T Consensus         9 ~~~p~~~fKIvlvG~~~vGKTsLi~~~~   36 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHL   36 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBH
T ss_pred             CCCCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf             7898706899999999949899999997


No 341
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2ke5_A*
Probab=63.46  E-value=4.9  Score=16.52  Aligned_cols=18  Identities=39%  Similarity=0.586  Sum_probs=14.8

Q ss_pred             EEEEECCCCCHHHHHHHH
Q ss_conf             999707886257899999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l  521 (789)
                      +++.|..+.|||+|++-+
T Consensus         7 I~iiG~~~vGKSsli~~~   24 (168)
T 1u8z_A            7 VIMVGSGGVGKSALTLQF   24 (168)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
T ss_conf             999998998889999999


No 342
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=63.40  E-value=2.9  Score=18.07  Aligned_cols=19  Identities=11%  Similarity=0.146  Sum_probs=10.9

Q ss_pred             CHHHHHHHHHHHHHHHHHC
Q ss_conf             0447999999999999987
Q gi|254781225|r  651 YTLEAKKWFLKGVKAYISK  669 (789)
Q Consensus       651 e~~~i~~w~l~g~~~~~~~  669 (789)
                      +.+.+..|+|.++..-+.+
T Consensus       303 ~~~~~~~w~l~~l~~~l~~  321 (376)
T 1of1_A          303 DLYNVFAWALDVLAKRLRS  321 (376)
T ss_dssp             CBCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHH
T ss_conf             8177799999999998864


No 343
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis}
Probab=63.01  E-value=5.2  Score=16.35  Aligned_cols=15  Identities=13%  Similarity=0.093  Sum_probs=7.9

Q ss_pred             EEEEECCCEEEEEEC
Q ss_conf             245415985873210
Q gi|254781225|r  578 IKQMTGGDCMTARLN  592 (789)
Q Consensus       578 ~K~ltggD~i~ar~~  592 (789)
                      ++.+--||.|-.-.+
T Consensus       489 ~~~a~~gDvVLv~G~  503 (535)
T 2wtz_A          489 VAWARPGDVVLIAGK  503 (535)
T ss_dssp             HHHCCTTCEEEEESC
T ss_pred             HHHCCCCCEEEECCC
T ss_conf             983899999998378


No 344
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=62.95  E-value=3.2  Score=17.77  Aligned_cols=13  Identities=15%  Similarity=0.381  Sum_probs=5.7

Q ss_pred             HHHHHHCCCEEEE
Q ss_conf             8999977985977
Q gi|254781225|r   10 AKQAIHNGFKLIP   22 (789)
Q Consensus        10 ~~~~i~~G~~viP   22 (789)
                      |+.+.+.|+.|.=
T Consensus        36 A~~l~~~G~~V~g   48 (491)
T 2f00_A           36 AEVLANEGYQISG   48 (491)
T ss_dssp             HHHHHHTTCEEEE
T ss_pred             HHHHHHCCCEEEE
T ss_conf             9999968993999


No 345
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=62.94  E-value=5.2  Score=16.34  Aligned_cols=29  Identities=21%  Similarity=0.335  Sum_probs=20.7

Q ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             75987433799997078862578999999
Q gi|254781225|r  494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      |-|......+.++.|+.+.|||+|.--+.
T Consensus        17 l~GGi~~G~~~~i~G~~GsGKT~l~lq~~   45 (243)
T 1n0w_A           17 LQGGIETGSITEMFGEFRTGKTQICHTLA   45 (243)
T ss_dssp             TTTSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf             26998599799999189999899999999


No 346
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=62.92  E-value=5.1  Score=16.41  Aligned_cols=20  Identities=35%  Similarity=0.524  Sum_probs=16.6

Q ss_pred             EEEEECCCCCHHHHHHHHHH
Q ss_conf             99970788625789999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +++.|..+.|||+|++-+..
T Consensus        24 I~vlG~~~vGKTSLi~~~~~   43 (190)
T 3con_A           24 LVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHC
T ss_conf             99999999199999999972


No 347
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=62.84  E-value=4.7  Score=16.65  Aligned_cols=19  Identities=42%  Similarity=0.628  Sum_probs=15.5

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|.++-|||+|++.+.
T Consensus        40 IvlvG~~~vGKSsLi~r~~   58 (211)
T 2g3y_A           40 VVLIGEQGVGKSTLANIFA   58 (211)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999969988899999998


No 348
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GDP-binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=62.33  E-value=5.3  Score=16.30  Aligned_cols=19  Identities=37%  Similarity=0.531  Sum_probs=15.4

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus        21 I~lvG~~~vGKTSli~r~~   39 (187)
T 2a9k_A           21 VIMVGSGGVGKSALTLQFM   39 (187)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999969988999999997


No 349
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Probab=62.30  E-value=5.3  Score=16.32  Aligned_cols=21  Identities=33%  Similarity=0.243  Sum_probs=16.3

Q ss_pred             EEEEEEECCCCCHHHHHHHHH
Q ss_conf             799997078862578999999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      .=+++.|..+.|||+|++-+.
T Consensus        21 ~KI~vvG~~~vGKTsLi~r~~   41 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYL   41 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
T ss_conf             799999959987899999998


No 350
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=62.30  E-value=3.3  Score=17.68  Aligned_cols=15  Identities=20%  Similarity=-0.026  Sum_probs=9.7

Q ss_pred             HHHHHHCCCEEEEEC
Q ss_conf             899997798597735
Q gi|254781225|r   10 AKQAIHNGFKLIPLR   24 (789)
Q Consensus        10 ~~~~i~~G~~viPi~   24 (789)
                      |+-+.+.||.|.=-+
T Consensus        36 A~~l~~~G~~V~gsD   50 (524)
T 3hn7_A           36 ALLARALGHTVTGSD   50 (524)
T ss_dssp             HHHHHHTTCEEEEEE
T ss_pred             HHHHHHCCCEEEEEE
T ss_conf             999996889699990


No 351
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=62.20  E-value=5.2  Score=16.37  Aligned_cols=19  Identities=32%  Similarity=0.541  Sum_probs=15.7

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus        28 I~vlG~~~vGKTSLi~rl~   46 (200)
T 2o52_A           28 FLVIGSAGTGKSCLLHQFI   46 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999957928999999998


No 352
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* 1e2l_A* ...
Probab=62.17  E-value=2.4  Score=18.53  Aligned_cols=19  Identities=11%  Similarity=0.146  Sum_probs=9.0

Q ss_pred             CHHHHHHHHHHHHHHHHHC
Q ss_conf             0447999999999999987
Q gi|254781225|r  651 YTLEAKKWFLKGVKAYISK  669 (789)
Q Consensus       651 e~~~i~~w~l~g~~~~~~~  669 (789)
                      +.+.+..|++.++..-.++
T Consensus       258 ~~~~~~~~~~~~l~~~l~~  276 (331)
T 1e2k_A          258 DLYNVFAWALDVLAKRLRS  276 (331)
T ss_dssp             CBCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHH
T ss_conf             8177799999999998864


No 353
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=61.96  E-value=5.4  Score=16.23  Aligned_cols=29  Identities=31%  Similarity=0.285  Sum_probs=22.6

Q ss_pred             HHCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             97598743379999707886257899999
Q gi|254781225|r  493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       493 ~l~g~~~~~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      .|-|.........++|+.+.|||+|.--+
T Consensus        12 ll~GGl~~g~i~li~G~~GsGKT~lal~~   40 (220)
T 2cvh_A           12 LLGGGFAPGVLTQVYGPYASGKTTLALQT   40 (220)
T ss_dssp             HTTSSBCTTSEEEEECSTTSSHHHHHHHH
T ss_pred             HHCCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf             32699738869999979998499999999


No 354
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=61.84  E-value=5.1  Score=16.41  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCC
Q ss_conf             79999707886257899999997233
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGN  527 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~  527 (789)
                      ..+-+.|..++||+||+.-|-..|-.
T Consensus         7 pii~ivG~~~SGKTTLi~~li~~L~~   32 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             27999906999899999999999997


No 355
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=61.78  E-value=5  Score=16.45  Aligned_cols=22  Identities=41%  Similarity=0.368  Sum_probs=15.7

Q ss_pred             EEEEEEECCCCCHHHHHHHHHH
Q ss_conf             7999970788625789999999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      .-+-+.|..+.|||||+|.|..
T Consensus       181 ~~iaiiGrPNvGKStL~N~L~g  202 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILN  202 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHC
T ss_conf             2699973898868999999849


No 356
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=61.55  E-value=5.5  Score=16.18  Aligned_cols=20  Identities=25%  Similarity=0.217  Sum_probs=16.3

Q ss_pred             EEEEEECCCCCHHHHHHHHH
Q ss_conf             99997078862578999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~  522 (789)
                      =+++.|..+-|||+|++-+.
T Consensus        10 KivvvG~~~vGKTsli~r~~   29 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYT   29 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             99999979979899999997


No 357
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=61.47  E-value=5.5  Score=16.17  Aligned_cols=21  Identities=14%  Similarity=0.154  Sum_probs=7.6

Q ss_pred             EEEEEEECCCCHHHHHHHHHH
Q ss_conf             799996468812567899987
Q gi|254781225|r   65 LYAFDIDSKDEKTANTFKDTF   85 (789)
Q Consensus        65 lv~iDiD~~d~~~~~~~~~~~   85 (789)
                      ++-|=||+.++.+...+.+.+
T Consensus        12 ~lrI~iEG~~GsGKTT~~~~L   32 (341)
T 1osn_A           12 VLRIYLDGAYGIGKTTAAEEF   32 (341)
T ss_dssp             EEEEEEEESSSSCTTHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
T ss_conf             659999888678899999999


No 358
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=61.11  E-value=5.6  Score=16.15  Aligned_cols=19  Identities=37%  Similarity=0.548  Sum_probs=15.7

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|.++.|||+|++-+.
T Consensus        16 ivviG~~~vGKTsLi~r~~   34 (223)
T 3cpj_B           16 IVLIGDSGVGKSNLLSRFT   34 (223)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999969999999997


No 359
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome dynamics; HET: GDP; 2.5A {Homo sapiens}
Probab=61.09  E-value=5.5  Score=16.19  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=16.6

Q ss_pred             CEEEEEEECCCCCHHHHHHHH
Q ss_conf             379999707886257899999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      ..=+++.|..+.|||+|++-+
T Consensus        34 ~iKI~vvG~~~vGKTSLi~r~   54 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVF   54 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHH
T ss_conf             789999999997899999999


No 360
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 2.07A {Thermus thermophilus HB8} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=61.05  E-value=4  Score=17.11  Aligned_cols=15  Identities=33%  Similarity=0.193  Sum_probs=7.5

Q ss_pred             EEEECCCCEE-EECCC
Q ss_conf             3485268438-80477
Q gi|254781225|r  126 LDILGCGQYF-VAYNI  140 (789)
Q Consensus       126 iEi~~~G~q~-V~~gs  140 (789)
                      .|+...|+.+ |+.|-
T Consensus       104 ~d~~~~~~~~~~~~gg  119 (416)
T 1udx_A          104 ADLTEEGQTVLVARGG  119 (416)
T ss_dssp             EEECSTTCEEEEECCC
T ss_pred             EEECCCCCEEEEECCC
T ss_conf             9935799599996479


No 361
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=60.99  E-value=5.2  Score=16.36  Aligned_cols=21  Identities=24%  Similarity=0.260  Sum_probs=16.2

Q ss_pred             EEEEEEECCCCCHHHHHHHHH
Q ss_conf             799997078862578999999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      .=+++.|..+.|||+|++-+.
T Consensus        26 iKI~ivG~~~vGKTsLi~rl~   46 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYT   46 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
T ss_conf             799999979979899999996


No 362
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=60.93  E-value=5.6  Score=16.13  Aligned_cols=60  Identities=17%  Similarity=0.248  Sum_probs=32.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             78888757947899999888799------9999999999999975987433799997078862578999999
Q gi|254781225|r  457 GTPFVEGEPSQEFLDLVSGYFES------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       457 ~~~y~~~a~~p~~~~~l~~~~~d------~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      .++..+......|.+++......      .+.+..+.+.+    .- .+ ..-+++.|-.+-||||++|.|.
T Consensus        55 K~DL~~~~~~~~w~~~~~~~~~~~i~~~~~~~~~~l~~~~----~~-~~-~~~i~vvG~PNVGKSslIN~L~  120 (262)
T 3cnl_A           55 KVDIADEKTTKKWVEFFKKQGKRVITTHKGEPRKVLLKKL----SF-DR-LARVLIVGVPNTGKSTIINKLK  120 (262)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH----CC-CT-TCEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH----HC-CC-CCEEEEECCCCCCHHHHHHHHH
T ss_conf             8877998999999998743597578840553589999986----02-67-7479997788755899999985


No 363
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=60.76  E-value=5  Score=16.45  Aligned_cols=19  Identities=37%  Similarity=0.543  Sum_probs=15.7

Q ss_pred             EEEEEECCCCCHHHHHHHH
Q ss_conf             9999707886257899999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l  521 (789)
                      =+++.|..+.|||+|++-+
T Consensus        28 KIvvlG~~~vGKTSli~rl   46 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERF   46 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
T ss_conf             9999999997999999999


No 364
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=60.44  E-value=5.7  Score=16.06  Aligned_cols=19  Identities=37%  Similarity=0.447  Sum_probs=15.7

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus        23 i~vvG~~~vGKTSLi~~~~   41 (213)
T 3cph_A           23 ILLIGDSGVGKSCLLVRFV   41 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999978999999997


No 365
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=60.35  E-value=3.7  Score=17.34  Aligned_cols=15  Identities=27%  Similarity=0.173  Sum_probs=6.1

Q ss_pred             EEEECCCCEE-EECCC
Q ss_conf             3485268438-80477
Q gi|254781225|r  126 LDILGCGQYF-VAYNI  140 (789)
Q Consensus       126 iEi~~~G~q~-V~~gs  140 (789)
                      .|+...|+.+ ||.|-
T Consensus       105 ~dl~~~~~~~~~a~Gg  120 (342)
T 1lnz_A          105 ADLTEHGQRAVIARGG  120 (342)
T ss_dssp             EEECSTTCEEEEECCC
T ss_pred             EECCCCCCEEEEECCC
T ss_conf             8705699489996078


No 366
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=60.22  E-value=5.6  Score=16.13  Aligned_cols=18  Identities=28%  Similarity=0.362  Sum_probs=14.8

Q ss_pred             EEEEECCCCCHHHHHHHH
Q ss_conf             999707886257899999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l  521 (789)
                      +++.|..+.|||+|++-+
T Consensus        11 i~vlG~~~vGKSsLi~r~   28 (203)
T 1zbd_A           11 ILIIGNSSVGKTSFLFRY   28 (203)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
T ss_conf             999998990989999999


No 367
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A
Probab=59.97  E-value=5.9  Score=16.00  Aligned_cols=13  Identities=15%  Similarity=0.105  Sum_probs=5.8

Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9999999987889
Q gi|254781225|r  660 LKGVKAYISKGLD  672 (789)
Q Consensus       660 l~g~~~~~~~g~~  672 (789)
                      ++-+..+.+.|..
T Consensus       484 ~~~v~~~~~~g~~  496 (624)
T 2gk6_A          484 EKITTKLLKAGAK  496 (624)
T ss_dssp             HHHHHHHHTTTCC
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999973999


No 368
>1xtq_A GTP-binding protein RHEB; beta saddle, P-loop, signaling protein; HET: GDP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtr_A* 1xts_A*
Probab=59.86  E-value=5.9  Score=15.99  Aligned_cols=20  Identities=35%  Similarity=0.292  Sum_probs=16.0

Q ss_pred             EEEEEECCCCCHHHHHHHHH
Q ss_conf             99997078862578999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~  522 (789)
                      =+++.|..+.|||+|++-+.
T Consensus         8 KI~viG~~~vGKSsLi~~~~   27 (177)
T 1xtq_A            8 KIAILGYRSVGKSSLTIQFV   27 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             99999989909899999997


No 369
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=59.52  E-value=5.1  Score=16.43  Aligned_cols=40  Identities=13%  Similarity=0.057  Sum_probs=20.4

Q ss_pred             HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             99999975987433799997078862578999999972330003
Q gi|254781225|r  488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI  531 (789)
Q Consensus       488 ~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~  531 (789)
                      +-.+-++.+...-+.+  +-+...+.+  ..+.+..++|.+-+.
T Consensus       327 ~~~a~~i~~n~~t~i~--~~~~~~d~~--ta~~~s~~lG~~~v~  366 (437)
T 1e9r_A          327 VKEAQTLRASFRSLVV--LGGSRTDPK--TNEDMSLSLGEHEVE  366 (437)
T ss_dssp             HHHHHHHHTTCCEEEE--EECCTTCHH--HHHHHHHHHCEEEEE
T ss_pred             HHHHHHHHHHCCCEEE--ECCCCCCHH--HHHHHHHHHCCEEEE
T ss_conf             8899999974787799--617999989--999999972987999


No 370
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=59.51  E-value=6  Score=15.95  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=17.1

Q ss_pred             CEEEEEEECCCCCHHHHHHHHH
Q ss_conf             3799997078862578999999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      ++=+++.|..+.|||+|+.-+.
T Consensus         7 ~~KivvvGd~~vGKTsLi~r~~   28 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFA   28 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
T ss_conf             2699999989979999999997


No 371
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=59.40  E-value=6  Score=15.94  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=16.1

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus        21 iviiG~~~vGKTsli~r~~   39 (194)
T 2atx_A           21 CVVVGDGAVGKTCLLMSYA   39 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999979999999996


No 372
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=59.31  E-value=6  Score=15.93  Aligned_cols=20  Identities=15%  Similarity=0.129  Sum_probs=11.4

Q ss_pred             EEEEECCCEEEEEECCCCCC
Q ss_conf             24541598587321047860
Q gi|254781225|r  578 IKQMTGGDCMTARLNYGNTY  597 (789)
Q Consensus       578 ~K~ltggD~i~ar~~~~~~~  597 (789)
                      ++.+.-||.|-.-++.-+.|
T Consensus       451 ~~~a~~gDvVLi~G~G~e~~  470 (498)
T 1e8c_A          451 VMQAKENDVVLVAGKGHEDY  470 (498)
T ss_dssp             HHHSCTTCEEEEESCTTCCE
T ss_pred             HHHCCCCCEEEEECCCCCCE
T ss_conf             98489989999947888784


No 373
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=59.25  E-value=6  Score=15.92  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=17.1

Q ss_pred             CEE-EEEEECCCCCHHHHHHHHH
Q ss_conf             379-9997078862578999999
Q gi|254781225|r  501 QRF-IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       501 ~~~-~~~~G~G~nGKSt~~~~l~  522 (789)
                      ..| +++.|..+.|||+|++-+.
T Consensus        13 ~~~KIviiG~~~vGKTsli~r~~   35 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFM   35 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCHHHHHHHHH
T ss_conf             33799999989988999999996


No 374
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=58.70  E-value=6.1  Score=15.86  Aligned_cols=21  Identities=24%  Similarity=0.398  Sum_probs=16.5

Q ss_pred             CEEEEEEECCCCCHHHHHHHH
Q ss_conf             379999707886257899999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      ++=+++.|..+.|||+|++-+
T Consensus        28 ~~KIviiGd~~vGKTsLi~r~   48 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVF   48 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
T ss_conf             479999998997899999999


No 375
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8
Probab=58.53  E-value=3.2  Score=17.79  Aligned_cols=19  Identities=21%  Similarity=0.391  Sum_probs=15.3

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus        11 I~vlG~~~vGKTSli~~~~   29 (183)
T 2fu5_C           11 LLLIGDSGVGKTCVLFRFS   29 (183)
T ss_dssp             EEEECCCCC----------
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999938899999997


No 376
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP binding protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=58.15  E-value=6.3  Score=15.80  Aligned_cols=18  Identities=33%  Similarity=0.582  Sum_probs=14.5

Q ss_pred             EEEEECCCCCHHHHHHHH
Q ss_conf             999707886257899999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l  521 (789)
                      +++.|..+.|||+|++-+
T Consensus         7 i~vvG~~~vGKTsLi~~~   24 (175)
T 2nzj_A            7 VVLLGDPGVGKTSLASLF   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
T ss_conf             999999996989999999


No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 1x1r_A* 1x1s_A*
Probab=57.79  E-value=6.4  Score=15.76  Aligned_cols=21  Identities=33%  Similarity=0.352  Sum_probs=16.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHH
Q ss_conf             999970788625789999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      =+++.|..+.|||+|++-+..
T Consensus        20 Ki~lvG~~~vGKTsli~r~~~   40 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQ   40 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999899688999999964


No 378
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=57.56  E-value=6.4  Score=15.74  Aligned_cols=19  Identities=47%  Similarity=0.674  Sum_probs=15.3

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus        10 I~v~G~~~vGKTsli~~~~   28 (177)
T 1wms_A           10 VILLGDGGVGKSSLMNRYV   28 (177)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999989989999999998


No 379
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=57.16  E-value=6.5  Score=15.69  Aligned_cols=19  Identities=37%  Similarity=0.382  Sum_probs=15.8

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus        24 I~vvG~~~vGKTSLi~rl~   42 (191)
T 2a5j_A           24 YIIIGDTGVGKSCLLLQFT   42 (191)
T ss_dssp             EEEESSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999989979999999984


No 380
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=57.06  E-value=6.5  Score=15.68  Aligned_cols=20  Identities=25%  Similarity=0.454  Sum_probs=16.2

Q ss_pred             EEEEEECCCCCHHHHHHHHH
Q ss_conf             99997078862578999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~  522 (789)
                      =+++.|..+.|||+|++-+.
T Consensus        27 KIlviG~~~vGKSSLi~r~~   46 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFS   46 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             89999999978999999997


No 381
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=57.05  E-value=6.5  Score=15.68  Aligned_cols=113  Identities=17%  Similarity=0.186  Sum_probs=52.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHCCCC----CCCCCHHHHHHCCCC--CCCCCCHHHHHH-CCCEEEEEECCCCCCCCCC
Q ss_conf             999970788625789999999723300----034426764201245--555689889973-8980999934677760131
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFGNQY----VINAEASDIMQNRPP--EAGKANPSLIRL-MGSRIVIISETNENDEINA  575 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG~~~----~~~~~~~~~~~~~~~--~~~~~~~~la~l-~g~r~~~~~E~~~~~~~~~  575 (789)
                      -+++||+.|.|||-|+..|.+-+-..+    +...+...+......  ..+.......+. ...-+.++++...-     
T Consensus       132 Pl~IyG~~G~GKTHLL~Ai~n~~~~~~~~~~v~y~t~e~f~~~~~~~~~~~~~~~~~~~~~r~~DvLliDDiq~l-----  206 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFL-----  206 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGG-----
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEECCCHHHH-----
T ss_conf             579980899867899999999999729971021023999888888753123358999985420452110227765-----


Q ss_pred             CEEEEEECCCEEEEEECCCCCCEE-EECCEEEEEECCCCCC-CCCCCCCEEEEEE
Q ss_conf             002454159858732104786068-7145289997388634-2679841664689
Q gi|254781225|r  576 AKIKQMTGGDCMTARLNYGNTYSE-SPASFTPFIVPNKHLF-VRNPDDAWWRRYI  628 (789)
Q Consensus       576 ~~~K~ltggD~i~ar~~~~~~~~~-~~p~~~~~~~~N~~P~-~~~~d~~~~rR~~  628 (789)
                            .|.+.. -+..+ .-|.. ......+++++...|. +.+.+.-+..|+.
T Consensus       207 ------~gk~~t-qeelf-~~fN~l~~~gkqIvitsd~~P~~l~~l~~rL~SRf~  253 (440)
T 2z4s_A          207 ------IGKTGV-QTELF-HTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ  253 (440)
T ss_dssp             ------SSCHHH-HHHHH-HHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH
T ss_pred             ------CCCHHH-HHHHH-HHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHH
T ss_conf             ------277789-99999-999999863985999689895663362378888986


No 382
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=56.89  E-value=6.6  Score=15.67  Aligned_cols=19  Identities=21%  Similarity=0.389  Sum_probs=15.7

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+-|||+|++-+.
T Consensus        32 ivvvG~~~vGKTSLi~rl~   50 (201)
T 2hup_A           32 LVLVGDASVGKTCVVQRFK   50 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999999908999999996


No 383
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=56.81  E-value=6.6  Score=15.66  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=17.3

Q ss_pred             CEEEEEEECCCCCHHHHHHHHH
Q ss_conf             3799997078862578999999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      +.=+.+.|.++.|||+|++-+.
T Consensus        23 ~~KI~vvG~~~vGKTSLi~~~~   44 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFV   44 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
T ss_conf             7799999989989999999997


No 384
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=56.20  E-value=6.8  Score=15.59  Aligned_cols=19  Identities=37%  Similarity=0.550  Sum_probs=15.7

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus         6 v~vvG~~~vGKTsli~r~~   24 (167)
T 1kao_A            6 VVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999979959999999997


No 385
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=55.99  E-value=6.8  Score=15.59  Aligned_cols=24  Identities=29%  Similarity=0.458  Sum_probs=17.7

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             799997078862578999999972330
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      .-+-+.|-.+.|||||+|.|   +|+.
T Consensus       176 ~~iaiiGrpN~GKStl~N~l---l~~~  199 (436)
T 2hjg_A          176 IQFCLIGRPNVGKSSLVNAM---LGEE  199 (436)
T ss_dssp             EEEEEECSTTSSHHHHHHHH---HTST
T ss_pred             CEEEEECCCCCCHHHHHHHH---HCCC
T ss_conf             47999869988789888787---2797


No 386
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=55.92  E-value=6.8  Score=15.56  Aligned_cols=22  Identities=32%  Similarity=0.344  Sum_probs=17.2

Q ss_pred             CEEEEEEECCCCCHHHHHHHHH
Q ss_conf             3799997078862578999999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      ..=+++.|.++.|||+|++-+.
T Consensus        28 ~iKIvvvG~~~vGKTsLi~r~~   49 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFL   49 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
T ss_conf             7699999999978999999997


No 387
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=55.90  E-value=6.8  Score=15.56  Aligned_cols=40  Identities=13%  Similarity=0.137  Sum_probs=23.0

Q ss_pred             CHHHHHHHHHHHHHHCCC----CCCCCCCHHHHHHHHHHCCCCC
Q ss_conf             179999999999985046----6755545256899998635423
Q gi|254781225|r  710 ESHSLAKSYSEYREQELN----YDRKRISTRTVTLNLKQKGFIG  749 (789)
Q Consensus       710 ~~~~l~~~y~~~~~~~~~----~~~~~~s~~~~~~~l~~~g~~~  749 (789)
                      +.+...++|.+.+++-.+    ...+|++.......|.+.|...
T Consensus       232 P~s~~a~~~~~LA~~il~~~~~~~p~p~~~~~~~~~~~~~~~~~  275 (289)
T 2afh_E          232 PKAKQADEYRALARKVVDNKLLVIPNPITMDELEELLMEFGIME  275 (289)
T ss_dssp             TTSHHHHHHHHHHHHHHHCCCCBCCCCCCHHHHHHHHHHTTSSC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             39989999999999997599998888899889999999967775


No 388
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=55.38  E-value=7  Score=15.51  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=20.9

Q ss_pred             HHHHCCC--CC-CCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             9997598--74-33799997078862578999999
Q gi|254781225|r  491 GMALLGG--NK-AQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       491 g~~l~g~--~~-~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      |..+.|.  +. .+.=+++.|..+-|||+|++-+.
T Consensus         3 ~~~~~~~~~~~~~~~Ki~vvG~~~vGKSsLi~~~~   37 (211)
T 3bbp_A            3 GMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFM   37 (211)
T ss_dssp             --------------CEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf             88898888898761799999959979999999997


No 389
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=54.91  E-value=7.1  Score=15.46  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=16.9

Q ss_pred             EEEEECCCCCHHHHHHHHHHH
Q ss_conf             999707886257899999997
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYA  524 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~l  524 (789)
                      +++.|..+-|||+|++-+...
T Consensus         9 ivvvG~~~vGKTsli~r~~~~   29 (192)
T 2cjw_A            9 VVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999998996889999999828


No 390
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=54.78  E-value=7.1  Score=15.44  Aligned_cols=19  Identities=26%  Similarity=0.455  Sum_probs=15.7

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus         8 i~viG~~~vGKTsli~~~~   26 (168)
T 1z2a_A            8 MVVVGNGAVGKSSMIQRYC   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999989909899999998


No 391
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.73A {Homo sapiens}
Probab=54.22  E-value=7.3  Score=15.38  Aligned_cols=20  Identities=25%  Similarity=0.262  Sum_probs=15.5

Q ss_pred             EEEEEEECCCCCHHHHHHHH
Q ss_conf             79999707886257899999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l  521 (789)
                      .=+++.|..+.|||+|++-+
T Consensus        21 iKvvivG~~~vGKTSLi~r~   40 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSY   40 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
T ss_conf             18999998998989999999


No 392
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=53.93  E-value=7.3  Score=15.35  Aligned_cols=23  Identities=30%  Similarity=0.297  Sum_probs=17.9

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             37999970788625789999999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +.=+++.|..+.|||+|++.+..
T Consensus        21 ~~Ki~viG~~~vGKTSli~~~~~   43 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHH
T ss_conf             79999999899889999999973


No 393
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=53.67  E-value=7.4  Score=15.33  Aligned_cols=25  Identities=36%  Similarity=0.634  Sum_probs=13.2

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             3799997078862578999999972
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ++..+.-|.||-||||+.--|...|
T Consensus        19 ~~IaV~SgKGGvGKTT~a~NLA~aL   43 (262)
T 2ph1_A           19 SRIAVMSGKGGVGKSTVTALLAVHY   43 (262)
T ss_dssp             CEEEEECSSSCTTHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             6999975999887999999999999


No 394
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 1ryf_A* 1ryh_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C 1ds6_A* 2qme_A* 2ov2_A* ...
Probab=53.43  E-value=7.5  Score=15.30  Aligned_cols=20  Identities=25%  Similarity=0.278  Sum_probs=15.9

Q ss_pred             EEEEEECCCCCHHHHHHHHH
Q ss_conf             99997078862578999999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~  522 (789)
                      =+++.|..+.|||+|++-+.
T Consensus         7 KvvivG~~~vGKTsli~~~~   26 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYT   26 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             99999989969999999997


No 395
>2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens} PDB: 2cls_A*
Probab=52.25  E-value=7.8  Score=15.18  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=17.5

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             33799997078862578999999
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      .+.=+++.|..+.|||+|++-+.
T Consensus         9 ~~~Ki~vvG~~~vGKTsli~~~~   31 (197)
T 2rex_B            9 ARCKLVLVGDVQCGKTAMLQVLA   31 (197)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCHHHHHHHHH
T ss_conf             41699999999958899999997


No 396
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=52.12  E-value=7.8  Score=15.17  Aligned_cols=27  Identities=15%  Similarity=0.347  Sum_probs=20.4

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             433799997078862578999999972
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +..-.++++|+.|.||+++...+...+
T Consensus        22 ~l~ha~L~~G~~G~GK~~~a~~~a~~l   48 (334)
T 1a5t_A           22 RGHHALLIQALPGMGDDALIYALSRYL   48 (334)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             956036358999988999999999997


No 397
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=50.52  E-value=8.3  Score=15.00  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=16.5

Q ss_pred             EEEEEEECCCCCHHHHHHHHH
Q ss_conf             799997078862578999999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      .=+++.|..+.|||+|++-+.
T Consensus         9 ~KV~vvG~~~vGKTsLi~r~~   29 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFV   29 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
T ss_conf             489999969988999999996


No 398
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=50.21  E-value=7.6  Score=15.26  Aligned_cols=18  Identities=50%  Similarity=0.776  Sum_probs=13.7

Q ss_pred             EEEEEEECCCCCHHHHHH
Q ss_conf             799997078862578999
Q gi|254781225|r  502 RFIHIRGVGGSGKSTLMN  519 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~~~  519 (789)
                      .+.-+.|.-++|||++++
T Consensus       524 ~l~~vtGvsGsGKstl~~  541 (842)
T 2vf7_A          524 VMTSVTGVSGSGKSTLVS  541 (842)
T ss_dssp             SEEEEECCTTSSHHHHCC
T ss_pred             CEEEEECCCCCCCHHHHH
T ss_conf             668885346766224588


No 399
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10}
Probab=49.96  E-value=7.9  Score=15.13  Aligned_cols=19  Identities=58%  Similarity=0.948  Sum_probs=14.7

Q ss_pred             CEEEEEEECCCCCHHHHHH
Q ss_conf             3799997078862578999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMN  519 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~  519 (789)
                      ..++-+.|..++||||++.
T Consensus       650 G~i~~i~G~sGsGKstL~~  668 (972)
T 2r6f_A          650 GTFVAVTGVSGSGKSTLVN  668 (972)
T ss_dssp             SSEEECCBCTTSSHHHHHT
T ss_pred             CCEEEEECCCCCCCCCHHH
T ss_conf             9755430467777640078


No 400
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=49.84  E-value=8.5  Score=14.93  Aligned_cols=10  Identities=30%  Similarity=0.185  Sum_probs=4.9

Q ss_pred             EECCCCCCCC
Q ss_conf             9743888558
Q gi|254781225|r  436 LDLETGQKVK  445 (789)
Q Consensus       436 ~dl~t~~~~~  445 (789)
                      +|..|+.|.+
T Consensus       265 ~d~~t~~~~~  274 (296)
T 1cr0_A          265 YNKETGWLEP  274 (296)
T ss_dssp             ECTTTCCEEE
T ss_pred             EECCCCEEEE
T ss_conf             9688656964


No 401
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=49.49  E-value=8.6  Score=14.90  Aligned_cols=19  Identities=26%  Similarity=0.342  Sum_probs=15.5

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+.|||+|++-+.
T Consensus        27 I~vvG~~~vGKTsLi~r~~   45 (201)
T 3oes_A           27 VVILGYRCVGKTSLAHQFV   45 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999979988999999997


No 402
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=49.30  E-value=8.6  Score=14.88  Aligned_cols=25  Identities=32%  Similarity=0.337  Sum_probs=19.9

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             7433799997078862578999999
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      .....-+.+.|-.+-|||||+|.|.
T Consensus       117 ~~~~~~v~vvG~PNVGKSsliN~L~  141 (282)
T 1puj_A          117 KPRAIRALIIGIPNVGKSTLINRLA  141 (282)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             7765157762388565889999982


No 403
>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A
Probab=48.29  E-value=9  Score=14.78  Aligned_cols=26  Identities=31%  Similarity=0.452  Sum_probs=16.8

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             37999970788625789999999723
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      +..+++.|+.|.||+|.+--|...+-
T Consensus        99 p~vil~vG~nG~GKTTTiaKLA~~~~  124 (309)
T 2qy9_A           99 PFVILMVGVNGVGKTTTIGKLARQFE  124 (309)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             86999965766676550789999998


No 404
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=48.12  E-value=9  Score=14.76  Aligned_cols=20  Identities=20%  Similarity=0.268  Sum_probs=15.9

Q ss_pred             EEEEECCCCCHHHHHHHHHH
Q ss_conf             99970788625789999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~  523 (789)
                      +++.|..+-|||+|++-+..
T Consensus        10 I~vvG~~~vGKTsLi~r~~~   29 (208)
T 3clv_A           10 TVLLGESSVGKSSIVLRLTK   29 (208)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHC
T ss_conf             99999999488999999971


No 405
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=47.71  E-value=9.1  Score=14.72  Aligned_cols=21  Identities=38%  Similarity=0.491  Sum_probs=11.1

Q ss_pred             EEECCCCCHHHHHHHHHHHHC
Q ss_conf             970788625789999999723
Q gi|254781225|r  506 IRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       506 ~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ++|.||-||||+.--|...|-
T Consensus         6 i~gKGGVGKTT~a~nLA~~La   26 (269)
T 1cp2_A            6 IYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEECTTSSHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHH
T ss_conf             989998769999999999999


No 406
>3hws_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli k-12} PDB: 3hte_A
Probab=45.98  E-value=9.7  Score=14.55  Aligned_cols=63  Identities=19%  Similarity=0.238  Sum_probs=40.4

Q ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHH----HHCCCCCCC-----EEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf             7899999888-7999999999999999----975987433-----7999970788625789999999723300
Q gi|254781225|r  467 QEFLDLVSGY-FESEEVMDYFTRCVGM----ALLGGNKAQ-----RFIHIRGVGGSGKSTLMNLIKYAFGNQY  529 (789)
Q Consensus       467 p~~~~~l~~~-~~d~e~~~~l~~~~g~----~l~g~~~~~-----~~~~~~G~G~nGKSt~~~~l~~llG~~~  529 (789)
                      ......|++. +|-++.++-+-..+--    .-.|.....     .-|++.||.|-||+-+...|...|+.+.
T Consensus         7 ~~i~~~L~~~ViGQd~Ai~~va~al~~~~~r~~~~~~~~~~~~~~~~~Lf~GPTGvGKTelAk~LA~~l~~~~   79 (363)
T 3hws_A            7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPF   79 (363)
T ss_dssp             HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999985892649399999999999999988745677788766765189989998889999999999860046


No 407
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=45.45  E-value=9.9  Score=14.49  Aligned_cols=19  Identities=32%  Similarity=0.410  Sum_probs=15.1

Q ss_pred             EEEEEECCCCCHHHHHHHH
Q ss_conf             9999707886257899999
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l  521 (789)
                      +++++|..++|||.|.+-+
T Consensus         1 iiLVtGGarSGKS~~AE~l   19 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEAL   19 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHH
T ss_conf             9899789875799999999


No 408
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=45.34  E-value=9.9  Score=14.48  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=16.3

Q ss_pred             CEEEEEEECCCCCHHHHHHHH
Q ss_conf             379999707886257899999
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      +.=+++.|..+.|||+|++-+
T Consensus         7 ~~ki~vvG~~~vGKTsli~r~   27 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRF   27 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHH
T ss_conf             469999998998899999999


No 409
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6- bisphosphatase; transferase (phospho), hydrolase (phospho), glycolysis, bifunctional enzyme; HET: ATG; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=45.07  E-value=10  Score=14.46  Aligned_cols=11  Identities=18%  Similarity=0.404  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHC
Q ss_conf             89999999723
Q gi|254781225|r  516 TLMNLIKYAFG  526 (789)
Q Consensus       516 t~~~~l~~llG  526 (789)
                      ++--++..++|
T Consensus       394 vir~ll~~~l~  404 (469)
T 1bif_A          394 VMRCLLAYFLD  404 (469)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999809


No 410
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=44.82  E-value=10  Score=14.43  Aligned_cols=46  Identities=13%  Similarity=0.181  Sum_probs=27.3

Q ss_pred             HHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             88799999999999999997598743379999707886257899999997
Q gi|254781225|r  475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA  524 (789)
Q Consensus       475 ~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~l  524 (789)
                      +++|..+.+.-+.+.+....  ..  ..-++++|+-|+||+++.+.|...
T Consensus         2 ~liG~S~~~~~l~~~l~~~a--~~--~~pvli~Ge~GtGK~~~A~~iH~~   47 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLS--ET--DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHT--TC--CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCHHHHHHHHHHHHHH--CC--CCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             06988999999999999996--88--994899899997879999999873


No 411
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=44.39  E-value=10  Score=14.39  Aligned_cols=11  Identities=9%  Similarity=-0.088  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999999975
Q gi|254781225|r  485 YFTRCVGMALL  495 (789)
Q Consensus       485 ~l~~~~g~~l~  495 (789)
                      -|++++.||.+
T Consensus       392 ~L~~~~~~~~~  402 (591)
T 2v1x_A          392 KLYEMVSYCQN  402 (591)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998


No 412
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=43.61  E-value=11  Score=14.31  Aligned_cols=19  Identities=21%  Similarity=0.275  Sum_probs=16.2

Q ss_pred             EEEEECCCCCHHHHHHHHH
Q ss_conf             9997078862578999999
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~  522 (789)
                      +++.|..+-|||+|++-+.
T Consensus        12 I~viG~~~vGKTsLi~r~~   30 (212)
T 2j0v_A           12 CVTVGDGAVGKTCMLICYT   30 (212)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             9999979978899999997


No 413
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=42.95  E-value=11  Score=14.24  Aligned_cols=22  Identities=18%  Similarity=0.181  Sum_probs=9.2

Q ss_pred             EEEEECC-CCCHHHHHHHHHHHH
Q ss_conf             9997078-862578999999972
Q gi|254781225|r  504 IHIRGVG-GSGKSTLMNLIKYAF  525 (789)
Q Consensus       504 ~~~~G~G-~nGKSt~~~~l~~ll  525 (789)
                      +|.+|+| +-||||+.-.|..+|
T Consensus         4 ~~Itgt~~GVGKTtvs~~La~~L   26 (224)
T 1byi_A            4 YFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998999975999999999999


No 414
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X*
Probab=40.67  E-value=12  Score=14.02  Aligned_cols=19  Identities=21%  Similarity=0.261  Sum_probs=9.8

Q ss_pred             CCHHHHHHHH--HCCEEEEEC
Q ss_conf             8989997420--078899923
Q gi|254781225|r   41 LSSEKIDKLP--ACGFGFVCG   59 (789)
Q Consensus        41 ~~~~~i~~~~--~~giGi~~G   59 (789)
                      .+.+++++..  ...|+|+..
T Consensus        10 msd~~l~~~L~~~ksIAVVGa   30 (144)
T 2d59_A           10 LTDEDIREILTRYKKIALVGA   30 (144)
T ss_dssp             CCHHHHHHHHHHCCEEEEETC
T ss_pred             CCHHHHHHHHHCCCEEEEECC
T ss_conf             799999999877894999863


No 415
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 3k0c_A* 3k0f_A*
Probab=40.44  E-value=12  Score=13.99  Aligned_cols=29  Identities=28%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             75987433799997078862578999999
Q gi|254781225|r  494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      |-|.....-..+++|+.++|||+|.--+.
T Consensus       274 lggG~~~gs~~ll~G~~GsGKT~l~~q~~  302 (525)
T 1tf7_A          274 CGGGFFKDSIILATGATGTGKTLLVSRFV  302 (525)
T ss_dssp             TTSSEESSCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf             27985345289983699874899999999


No 416
>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=40.11  E-value=12  Score=13.96  Aligned_cols=16  Identities=19%  Similarity=0.401  Sum_probs=7.2

Q ss_pred             HHHHHCCCEEEEECCC
Q ss_conf             9999779859773567
Q gi|254781225|r   11 KQAIHNGFKLIPLRLG   26 (789)
Q Consensus        11 ~~~i~~G~~viPi~pg   26 (789)
                      +.+.+.||.|+|+.|.
T Consensus        25 ~~L~~~G~~V~pVnP~   40 (122)
T 3ff4_A           25 ERLKSHGHEFIPVGRK   40 (122)
T ss_dssp             HHHHHHTCCEEEESSS
T ss_pred             HHHHHCCCEEEEECCC
T ss_conf             9999789989998887


No 417
>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: a.80.1.1 c.37.1.20
Probab=39.99  E-value=12  Score=13.95  Aligned_cols=130  Identities=12%  Similarity=0.119  Sum_probs=66.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC--CCCHH--HH
Q ss_conf             999999999999999759874337999970788625789999999723300034426764201245555--68988--99
Q gi|254781225|r  479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG--KANPS--LI  554 (789)
Q Consensus       479 d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~--~~~~~--la  554 (789)
                      .++.++.+++++-      ...-.-++++|+-+.||+++...+..-+.......++...+... +.+.+  ..+.-  -+
T Consensus         2 ~~~~~~~~~~~~~------~~~~~~~~~~g~~g~gk~~~~~~~~~~i~~~~~~HpD~~~i~~e-~~~I~Id~IR~l~~~~   74 (305)
T 2gno_A            2 AKDQLETLKRIIE------KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE-GENIGIDDIRTIKDFL   74 (305)
T ss_dssp             --CHHHHHHHHHH------TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS-SSCBCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH------CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECC-CCCCCHHHHHHHHHHH
T ss_conf             6789999999997------69997498889999887999999999973656779988987077-6789989999999999


Q ss_pred             H----HCCCEEEEEECCCCCCCCCC-CEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf             7----38980999934677760131-002454159858732104786068714528999738863426798416646899
Q gi|254781225|r  555 R----LMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV  629 (789)
Q Consensus       555 ~----l~g~r~~~~~E~~~~~~~~~-~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~i  629 (789)
                      .    .-+.+++++.|.+.-..-+. +.+|.|                .+..+...+++.||+.-.+-.   .+-.|...
T Consensus        75 ~~~p~~~~~KVvIId~ad~lt~~AaNaLLK~L----------------EEPp~~t~fIL~t~~~~kilp---TI~SRCq~  135 (305)
T 2gno_A           75 NYSPELYTRKYVIVHDCERMTQQAANAFLKAL----------------EEPPEYAVIVLNTRRWHYLLP---TIKSRVFR  135 (305)
T ss_dssp             TSCCSSSSSEEEEETTGGGBCHHHHHHTHHHH----------------HSCCTTEEEEEEESCGGGSCH---HHHTTSEE
T ss_pred             HHCCCCCCCEEEEEECHHHCCHHHHHHHHHHH----------------HCCCCCCEEEEEECCCCCCCC---HHHCCEEE
T ss_conf             53553589669998575542999999999997----------------479977058752057424763---00310367


Q ss_pred             EECCC
Q ss_conf             96588
Q gi|254781225|r  630 IPFDK  634 (789)
Q Consensus       630 ipF~~  634 (789)
                      +.|..
T Consensus       136 ~~~~~  140 (305)
T 2gno_A          136 VVVNV  140 (305)
T ss_dssp             EECCC
T ss_pred             EECCC
T ss_conf             74488


No 418
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=39.81  E-value=12  Score=13.93  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=16.8

Q ss_pred             CCCEEEEEEECCCCCHHHHHHH
Q ss_conf             4337999970788625789999
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNL  520 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~  520 (789)
                      .....+++.|+.|+||||.+-.
T Consensus        74 ~~n~vvvV~G~TGsGKSTqiPq   95 (235)
T 3llm_A           74 SQNSVVIIRGATGCGKTTQVPQ   95 (235)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHH
T ss_pred             HHCCEEEEEECCCCCHHHHHHH
T ss_conf             9799799993898999999999


No 419
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ewa_A* 3ew9_A* 3etl_A* 2gdj_A*
Probab=38.89  E-value=12  Score=13.84  Aligned_cols=24  Identities=42%  Similarity=0.596  Sum_probs=15.4

Q ss_pred             CCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf             598743379999707886257899
Q gi|254781225|r  495 LGGNKAQRFIHIRGVGGSGKSTLM  518 (789)
Q Consensus       495 ~g~~~~~~~~~~~G~G~nGKSt~~  518 (789)
                      -|+........++|+.+.|||+|.
T Consensus        92 ~GGl~~G~itei~G~pGsGKT~la  115 (322)
T 2i1q_A           92 GGGLESQSVTEFAGVFGSGKTQIM  115 (322)
T ss_dssp             TSSEETTEEEEEEESTTSSHHHHH
T ss_pred             CCCCCCCEEEEEECCCCCCCCHHH
T ss_conf             799778838999768887737999


No 420
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A*
Probab=38.80  E-value=12  Score=13.83  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=18.7

Q ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             433799997078862578999999972
Q gi|254781225|r  499 KAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       499 ~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ..+..+++.|+.+.||+|.+--+...+
T Consensus        96 ~~~~i~~lvG~~G~GKTTt~aKLA~~~  122 (295)
T 1ls1_A           96 KDRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCCEEHHHHHHHHH
T ss_conf             896499996778898521199999999


No 421
>2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=37.51  E-value=13  Score=13.70  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=14.7

Q ss_pred             EEEEEEECCCCCHHHH-HHHHHHHH
Q ss_conf             7999970788625789-99999972
Q gi|254781225|r  502 RFIHIRGVGGSGKSTL-MNLIKYAF  525 (789)
Q Consensus       502 ~~~~~~G~G~nGKSt~-~~~l~~ll  525 (789)
                      -+.++.||.|+|||++ ..++..++
T Consensus       372 ~lsLIqGPPGTGKT~Ti~~iI~~L~  396 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATIVYHLA  396 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9728989999995099999999999


No 422
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=36.96  E-value=13  Score=13.64  Aligned_cols=24  Identities=13%  Similarity=0.243  Sum_probs=14.9

Q ss_pred             HHHHHHHHHCCCEEEEECC-CCCCC
Q ss_conf             8878999977985977356-77878
Q gi|254781225|r    7 KEQAKQAIHNGFKLIPLRL-GDKRP   30 (789)
Q Consensus         7 ~~~~~~~i~~G~~viPi~p-g~KrP   30 (789)
                      |..|-..+-+|-.++=+.| |.+|.
T Consensus        30 Q~~aI~~iL~G~Dvlv~apTGsGKT   54 (523)
T 1oyw_A           30 QEEIIDTVLSGRDCLVVMPTGGGKS   54 (523)
T ss_dssp             HHHHHHHHHTTCCEEEECSCHHHHH
T ss_pred             HHHHHHHHHCCCCEEEECCCCCHHH
T ss_conf             9999999983998899869984699


No 423
>3l0i_B RAS-related protein RAB-1A; GEF/GDF-RAB complex, GTP-binding, guanine-nucleotide exchange factor, GDI-displacement factor; 2.85A {Homo sapiens}
Probab=36.85  E-value=6  Score=15.93  Aligned_cols=28  Identities=29%  Similarity=0.369  Sum_probs=18.5

Q ss_pred             HHCCCCCC-C-EE-EEEEECCCCCHHHHHHH
Q ss_conf             97598743-3-79-99970788625789999
Q gi|254781225|r  493 ALLGGNKA-Q-RF-IHIRGVGGSGKSTLMNL  520 (789)
Q Consensus       493 ~l~g~~~~-~-~~-~~~~G~G~nGKSt~~~~  520 (789)
                      ...+-+.+ . .| +++.|..+.|||+|++-
T Consensus        22 ~~~~~~~~~~~~~KI~vlG~~~vGKTSLi~r   52 (199)
T 3l0i_B           22 PMSSMNPEYDYLFKLLLIGDSGVGKSCLLLR   52 (199)
T ss_dssp             ---CC-CCCSEEEEEEEECCTTSCCTTTTTS
T ss_pred             CCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
T ss_conf             7656798757798999999899598999999


No 424
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=36.47  E-value=14  Score=13.59  Aligned_cols=14  Identities=21%  Similarity=0.143  Sum_probs=7.5

Q ss_pred             CCEEEEEEECCCCH
Q ss_conf             98799996468812
Q gi|254781225|r   63 QPLYAFDIDSKDEK   76 (789)
Q Consensus        63 ~glv~iDiD~~d~~   76 (789)
                      ..++.||.|...+.
T Consensus        32 ~~VlliD~D~~~~~   45 (237)
T 1g3q_A           32 RKVLAVDGDLTMAN   45 (237)
T ss_dssp             CCEEEEECCTTSCC
T ss_pred             CCEEEEECCCCCCC
T ss_conf             98999979999997


No 425
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=36.44  E-value=14  Score=13.59  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=16.9

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             999970788625789999999723
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ..+.-+.||-||||+.--|...|-
T Consensus         3 I~v~s~KGGvGKTT~a~nLA~~La   26 (209)
T 3cwq_A            3 ITVASFKGGVGKTTTAVHLSAYLA   26 (209)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             999829998749999999999999


No 426
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=33.13  E-value=15  Score=13.24  Aligned_cols=26  Identities=31%  Similarity=0.446  Sum_probs=19.6

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             37999970788625789999999723
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ...+++.|+.|.||+|.+-=|.+.+-
T Consensus       100 p~vi~~vG~~G~GKTTTiaKLA~~~~  125 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             86999757988867749999999999


No 427
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Pyrococcus horikoshii OT3}
Probab=32.84  E-value=15  Score=13.21  Aligned_cols=25  Identities=8%  Similarity=-0.040  Sum_probs=13.4

Q ss_pred             HCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf             7598743379999707886257899
Q gi|254781225|r  494 LLGGNKAQRFIHIRGVGGSGKSTLM  518 (789)
Q Consensus       494 l~g~~~~~~~~~~~G~G~nGKSt~~  518 (789)
                      |-|....-..+++.|+.++|||+|.
T Consensus        14 l~GG~~~g~~~ll~g~~gsgkt~l~   38 (260)
T 3bs4_A           14 IGKIKKHSLILIHEEDASSRGKDIL   38 (260)
T ss_dssp             HCCBCTTCEEEEEECSGGGCHHHHH
T ss_pred             HCCCCCCCEEEEEEECCCCCHHHHH
T ss_conf             3799879869999938999989999


No 428
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerization motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=32.74  E-value=15  Score=13.20  Aligned_cols=15  Identities=33%  Similarity=0.459  Sum_probs=5.6

Q ss_pred             CCCCCCCCHHHHHHH
Q ss_conf             221646899999999
Q gi|254781225|r  159 VEDTPLLSEEDVEYL  173 (789)
Q Consensus       159 ~~~~P~i~~~~~~~l  173 (789)
                      +.++|=+.+..++.|
T Consensus        37 l~~l~gv~~~~~~kL   51 (349)
T 1pzn_A           37 IEDLPGVGPATAEKL   51 (349)
T ss_dssp             SSCCTTCCHHHHHHH
T ss_pred             HHHCCCCCHHHHHHH
T ss_conf             633799699999999


No 429
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=32.60  E-value=16  Score=13.19  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=16.9

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             3799997078862578999999972
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +..+++.|+-|.||+|.+-=|.+.+
T Consensus       157 p~vIl~vG~nGvGKTTTiaKLA~~~  181 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             8699997888886461799999999


No 430
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=32.16  E-value=16  Score=13.14  Aligned_cols=29  Identities=31%  Similarity=0.454  Sum_probs=19.9

Q ss_pred             HHCCCCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf             97598743379999707886257899999
Q gi|254781225|r  493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLI  521 (789)
Q Consensus       493 ~l~g~~~~~~~~~~~G~G~nGKSt~~~~l  521 (789)
                      .|-|+.....+..++|+.+.|||+|.--+
T Consensus        99 lLgGGi~~G~itei~G~~GsGKT~l~l~l  127 (324)
T 2z43_A           99 LLAGGIETRTMTEFFGEFGSGKTQLCHQL  127 (324)
T ss_dssp             HTTTSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf             77897417879998758888804799999


No 431
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls}
Probab=31.75  E-value=16  Score=13.09  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=12.5

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             999970788625789999999723
Q gi|254781225|r  503 FIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       503 ~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ..|+-+.||-||||+.--|...|.
T Consensus         7 I~v~s~kGGvGkTt~a~nlA~~La   30 (245)
T 3ea0_A            7 FGFVSAKGGDGGSCIAANFAFALS   30 (245)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             999899997659999999999999


No 432
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=31.62  E-value=16  Score=13.08  Aligned_cols=29  Identities=24%  Similarity=0.247  Sum_probs=19.2

Q ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf             75987433799997078862578999999
Q gi|254781225|r  494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIK  522 (789)
Q Consensus       494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~  522 (789)
                      |-|+........++|+.+.|||+|.--+.
T Consensus       115 LgGGi~~G~ItEi~G~~GsGKTql~l~la  143 (343)
T 1v5w_A          115 LGGGIESMAITEAFGEFRTGKTQLSHTLC  143 (343)
T ss_dssp             TTSSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             HCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             08995788699997799888999999999


No 433
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=31.08  E-value=16  Score=13.02  Aligned_cols=14  Identities=21%  Similarity=0.166  Sum_probs=7.4

Q ss_pred             CCCCCCCHHHHHHH
Q ss_conf             45656898999742
Q gi|254781225|r   36 WEEQLLSSEKIDKL   49 (789)
Q Consensus        36 w~~~~~~~~~i~~~   49 (789)
                      ++.+-.+.+.++++
T Consensus        18 L~~RgI~~~~~~~~   31 (503)
T 1q57_A           18 LTARGISKETCQKA   31 (503)
T ss_dssp             BTTTTBCHHHHHHH
T ss_pred             HHHCCCCHHHHHHC
T ss_conf             75488899999975


No 434
>3co5_A Putative two-component system transcriptional response regulator; structural genomics, APC89341.1, sigma-54 interaction domain; 2.40A {Neisseria gonorrhoeae fa 1090}
Probab=30.77  E-value=15  Score=13.24  Aligned_cols=43  Identities=12%  Similarity=0.095  Sum_probs=25.4

Q ss_pred             HCCC-HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             8799-99999999999999759874337999970788625789999999
Q gi|254781225|r  476 YFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       476 ~~~d-~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      .+|. +.+.+..+++--++-+     ..=++++|..|+||+++...|..
T Consensus         6 liG~S~~~~~l~~~i~~~a~~-----~~pvlI~GE~GtGK~~~A~~IH~   49 (143)
T 3co5_A            6 KLGNSAAIQEMNREVEAAAKR-----TSPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             --CCCHHHHHHHHHHHHHHTC-----SSCEEEEEETTCCHHHHHGGGCC
T ss_pred             CEECCHHHHHHHHHHHHHHCC-----CCCEEEECCCCCCHHHHHHHHHH
T ss_conf             367999999999999999588-----98089982899878999999997


No 435
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=30.09  E-value=17  Score=12.91  Aligned_cols=25  Identities=32%  Similarity=0.558  Sum_probs=14.9

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             3799997078862578999999972
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ...+++.|+-|.||+|.+--|...+
T Consensus        98 p~vi~lvG~~G~GKTTt~aKLA~~~  122 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             8799974676666203799999999


No 436
>2ax3_A Hypothetical protein TM0922; putative carbohydrate kinase, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.27A {Thermotoga maritima MSB8} SCOP: c.72.1.4 c.104.1.1
Probab=29.37  E-value=16  Score=13.06  Aligned_cols=12  Identities=33%  Similarity=0.722  Sum_probs=8.1

Q ss_pred             CCEEEEECCCCC
Q ss_conf             788999234779
Q gi|254781225|r   52 CGFGFVCGVGEQ   63 (789)
Q Consensus        52 ~giGi~~G~~s~   63 (789)
                      ..|-|+||++.|
T Consensus        53 ~~v~vl~G~GNN   64 (502)
T 2ax3_A           53 YRFLVLCGGGNN   64 (502)
T ss_dssp             CEEEEEECSSHH
T ss_pred             CEEEEEECCCCC
T ss_conf             989999899978


No 437
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=28.96  E-value=18  Score=12.79  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=16.5

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             37999970788625789999999723
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ++..|.-|.||-||||+.--|...|-
T Consensus         7 k~I~v~s~KGGvGKTTia~nlA~~La   32 (257)
T 1wcv_1            7 RRIALANQKGGVGKTTTAINLAAYLA   32 (257)
T ss_dssp             CEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             69999869998769999999999999


No 438
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=28.64  E-value=18  Score=12.75  Aligned_cols=17  Identities=29%  Similarity=0.470  Sum_probs=7.0

Q ss_pred             CEEEEEEECCCCCHHHH
Q ss_conf             37999970788625789
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTL  517 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~  517 (789)
                      +.++++.|+|+||=--|
T Consensus        80 ~~IlvlcG~GNNGGDGl   96 (265)
T 2o8n_A           80 PTVLVICGPGNNGGDGL   96 (265)
T ss_dssp             CEEEEEECSSHHHHHHH
T ss_pred             CEEEEEECCCCCHHHHH
T ss_conf             84999988998769999


No 439
>3h20_A Replication protein B; primase, nucleotidyltransferase, helix-bundle-domain; 1.99A {Plasmid RSF1010} PDB: 3h25_A
Probab=28.59  E-value=18  Score=12.75  Aligned_cols=103  Identities=11%  Similarity=0.063  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHCCCEEEEECCCCCCCCC--CCCCCCCCC--CHHHHHHHHHCCEEEEECCCC-CCEEEEEEECCCCHHHHH
Q ss_conf             888789999779859773567787877--565456568--989997420078899923477-987999964688125678
Q gi|254781225|r    6 WKEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLL--SSEKIDKLPACGFGFVCGVGE-QPLYAFDIDSKDEKTANT   80 (789)
Q Consensus         6 ~~~~~~~~i~~G~~viPi~pg~KrP~~--~~~w~~~~~--~~~~i~~~~~~giGi~~G~~s-~glv~iDiD~~d~~~~~~   80 (789)
                      -++..+++-+.|..-+=|..++..+..  ..+|+...+  ....+++....|-+|+.-+.+ ..-..|++|....+... 
T Consensus         7 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~l~~~n~~g~~iyv~p~~~~~~~~v~~Dd~~~~~~~-   85 (323)
T 3h20_A            7 LQAIGRQLKAMGCERFDIGVRDATTGQMMNREWSAAEVLQNTPWLKRMNAQGNDVYIRPAEQERHGLVLVDDLSEFDLD-   85 (323)
T ss_dssp             HHHHHHHHHHHCCSEEEEEEEETTTCCEEEEEEEHHHHHHTHHHHHHHHHTTEEEEEEECTTCCCCEEEEEEECHHHHH-
T ss_pred             HHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHH-
T ss_conf             9999999986085310013467431211233667777998779999875258867997567787404872679899999-


Q ss_pred             HHHHHHHCCCCCEEEECCCCCEEEEEEECCC
Q ss_conf             9998764189976996788965999950731
Q gi|254781225|r   81 FKDTFEILHGTPIVRIGQKPKILIPFRMNKE  111 (789)
Q Consensus        81 ~~~~~~~l~g~p~~~~g~~~~~~~~yr~~~~  111 (789)
                        .+.......+.+-.+++++.|.+.+++..
T Consensus        86 --~l~~~g~~P~~vv~ts~g~~h~~w~~~~~  114 (323)
T 3h20_A           86 --DMKAEGREPALVVETSPKNYQAWVKVADA  114 (323)
T ss_dssp             --HHHHTTCCCSEEEEEETTEEEEEEECCSC
T ss_pred             --HHHHCCCCCCEEEEECCCCEEEEEEECCC
T ss_conf             --99965899867998089967999981798


No 440
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=28.46  E-value=18  Score=12.73  Aligned_cols=197  Identities=11%  Similarity=0.095  Sum_probs=80.6

Q ss_pred             HHHHHHCCCH-HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCC-------CCCCCCHHHHHHC-
Q ss_conf             9998887999-999999999999975987433799997078862578999999972330-------0034426764201-
Q gi|254781225|r  471 DLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ-------YVINAEASDIMQN-  541 (789)
Q Consensus       471 ~~l~~~~~d~-e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~-------~~~~~~~~~~~~~-  541 (789)
                      .|-++++|.. .+.+.+.++.-++-++   ..  ++++|.-|+||+.+...|...-+..       ++...+....... 
T Consensus         3 ~~~~~liG~S~~~~~~~~~i~~~a~~~---~p--vlI~GE~GtGK~~lA~~iH~~s~~~~~~~~~i~c~~~~~~~~~~~l   77 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLEQVSHLAPLD---KP--VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSEL   77 (265)
T ss_dssp             -------CCCHHHHHHHHHHHHHTTSC---SC--EEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHH
T ss_pred             CCCCCEEECCHHHHHHHHHHHHHHCCC---CC--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             778871872999999999999984899---97--8988989978999999999846465799734667776244689997


Q ss_pred             CCCCC------CCCCHHHHHHCCCEEEEEECCCCCCCCCCC-EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCC
Q ss_conf             24555------568988997389809999346777601310-02454159858732104786068714528999738863
Q gi|254781225|r  542 RPPEA------GKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL  614 (789)
Q Consensus       542 ~~~~~------~~~~~~la~l~g~r~~~~~E~~~~~~~~~~-~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P  614 (789)
                      .+...      ...+..+......-.+++.+.+.-....-. .++.|..+. +  ++....  ......+.++++++.-+
T Consensus        78 ~g~~~~~~~~~~~~~~G~le~a~~GtL~l~~i~~L~~~~Q~~L~~~l~~~~-~--~r~~~~--~~~~~~~rii~ss~~~~  152 (265)
T 2bjv_A           78 FGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGE-L--ERVGGS--QPLQVNVRLVCATNADL  152 (265)
T ss_dssp             HCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCE-E--CCCCC----CEECCCEEEEEESSCH
T ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCE-E--EECCCC--CEEEEEEEEECCCCCCH
T ss_conf             186567766311168880788689889986614499999999999850691-7--977999--62566566522456678


Q ss_pred             CC----CCCCCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHH
Q ss_conf             42----67984166468999658878887878334220120447999999999999987889--887889999999999
Q gi|254781225|r  615 FV----RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD--VDIPEVCLKAKEEER  687 (789)
Q Consensus       615 ~~----~~~d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i~~w~l~g~~~~~~~g~~--~~~p~~v~~a~~~y~  687 (789)
                      .-    ...+..++.|+.......+-      |-++.  ...+.+....+.-+.  .+.|.+  +...+.+.+....|.
T Consensus       153 ~~~~~~~~~~~~L~~~l~~~~i~vPp------LreR~--eDi~~l~~~~l~~~~--~~~~~~~~~~ls~~a~~~L~~y~  221 (265)
T 2bjv_A          153 PAMVNEGTFRADLLDALAFDVVQLPP------LRERE--SDIMLMAEYFAIQMC--REIKLPLFPGFTERARETLLNYR  221 (265)
T ss_dssp             HHHHHHTSSCHHHHHHHCSEEEECCC------GGGCH--HHHHHHHHHHHHHHH--HHTTCSSCCCBCHHHHHHHHHSC
T ss_pred             HHHHHHCCCCCCHHHCCCEEEEECCC------CCCCC--CCHHHHHHHHHHHHH--HHHCCCCCCCCCHHHHHHHHHCC
T ss_conf             99988087543243301437998189------99875--479999999999999--98389854557899999998189


No 441
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=28.12  E-value=18  Score=12.69  Aligned_cols=13  Identities=8%  Similarity=-0.286  Sum_probs=5.8

Q ss_pred             CCHHHHHHHHHHH
Q ss_conf             8999999999762
Q gi|254781225|r  165 LSEEDVEYLFKFF  177 (789)
Q Consensus       165 i~~~~~~~l~~~~  177 (789)
                      +|+.....+++..
T Consensus        77 ~p~~~~~~il~e~   89 (138)
T 1y81_A           77 VPPKVGLQVAKEA   89 (138)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             ECHHHHHHHHHHH
T ss_conf             1788879999999


No 442
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=27.89  E-value=19  Score=12.67  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=13.9

Q ss_pred             CCCCCCEEEEEEECCCCCHHHHHH
Q ss_conf             987433799997078862578999
Q gi|254781225|r  496 GGNKAQRFIHIRGVGGSGKSTLMN  519 (789)
Q Consensus       496 g~~~~~~~~~~~G~G~nGKSt~~~  519 (789)
                      |......+..++|+.+.|||+|.-
T Consensus       173 GGIp~G~ItEI~GepGsGKTqLal  196 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLCH  196 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHH
T ss_conf             997688489985699899999999


No 443
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=27.32  E-value=19  Score=12.60  Aligned_cols=27  Identities=22%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             337999970788625789999999723
Q gi|254781225|r  500 AQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       500 ~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ....+++.|+.|.||+|.+-=|...+-
T Consensus       104 ~p~villvG~~G~GKTTTiaKLA~~~~  130 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             977999977878870528999999998


No 444
>1r5b_A Eukaryotic peptide chain release factor GTP- binding subunit; translation termination, peptide release, GTPase; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=26.19  E-value=20  Score=12.47  Aligned_cols=29  Identities=34%  Similarity=0.294  Sum_probs=0.0

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             74337999970788625789999999723
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      .+++.=+...|.=..||||++..|....|
T Consensus        40 ~k~~vni~viGhVD~GKSTL~g~L~~~~g   68 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTG   68 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTT
T ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf             99804999996678649899999999719


No 445
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=26.13  E-value=20  Score=12.46  Aligned_cols=59  Identities=17%  Similarity=0.191  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCCCCE------EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             78999998887-9999999999999999759874337------99997078862578999999972
Q gi|254781225|r  467 QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR------FIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       467 p~~~~~l~~~~-~d~e~~~~l~~~~g~~l~g~~~~~~------~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +...++++.+- ...+..+.+++.+.-.+........      .+++.|+.|.||+|.+--|...+
T Consensus        63 ~~~~~ii~~l~~~~~~~~~~l~~~~~~~l~~~~~l~~~~~~p~vi~~vG~~G~GKTTT~aKLA~~~  128 (306)
T 1vma_A           63 ETTEYILERLEEKDGDALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             HHHHHHHHHHTTCCSCHHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             999999999987668899999999999853233100167899699997788898431599999999


No 446
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 intergenic region; yeast hypothetical protein, structural genomics, selenomethionine, PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=25.79  E-value=16  Score=13.03  Aligned_cols=15  Identities=33%  Similarity=0.614  Sum_probs=0.0

Q ss_pred             CCCEEEEEEECCCCC
Q ss_conf             433799997078862
Q gi|254781225|r  499 KAQRFIHIRGVGGSG  513 (789)
Q Consensus       499 ~~~~~~~~~G~G~nG  513 (789)
                      +.+.++++.|+|+||
T Consensus        57 ~~~~i~il~G~GNNG   71 (246)
T 1jzt_A           57 KGKHVFVIAGPGNNG   71 (246)
T ss_dssp             HTCEEEEEECSSHHH
T ss_pred             CCCEEEEEECCCCCC
T ss_conf             688599997899984


No 447
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=25.32  E-value=21  Score=12.37  Aligned_cols=48  Identities=19%  Similarity=0.232  Sum_probs=0.0

Q ss_pred             CCHHHHHHHHHHHHHHHCCCC-----------CCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             999999999999999975987-----------433799997078862578999999972
Q gi|254781225|r  478 ESEEVMDYFTRCVGMALLGGN-----------KAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       478 ~d~e~~~~l~~~~g~~l~g~~-----------~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +.+.+++.+.+.+.-.|-+..           .....+++.|+.|.||+|.+-=|...+
T Consensus        95 ~~~~l~~~l~~~L~~ll~~~~~~~~~~~~~~~~~p~Vi~~vG~~G~GKTTt~aKlA~~~  153 (328)
T 3e70_C           95 KGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             -CHHHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             79999999999999874543332202332036898699997687788654389999999


No 448
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=24.43  E-value=21  Score=12.26  Aligned_cols=30  Identities=27%  Similarity=0.326  Sum_probs=0.0

Q ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             987433799997078862578999999972
Q gi|254781225|r  496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       496 g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ....-+...+.-+.||-||||+.-.+...|
T Consensus       139 ~~~~~kvI~V~S~kGGvGKTT~A~~LA~~L  168 (373)
T 3fkq_A          139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAH  168 (373)
T ss_dssp             CTTSCEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             689987999989999951999999999999


No 449
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=23.32  E-value=23  Score=12.12  Aligned_cols=30  Identities=20%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             HCCCCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             759874337999970788625789999999
Q gi|254781225|r  494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKY  523 (789)
Q Consensus       494 l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~  523 (789)
                      ++|+-...-+.++.|..+.|||+|+.-+..
T Consensus       193 ~~~G~~~g~l~vi~a~pg~GKT~~~~~~a~  222 (444)
T 2q6t_A          193 LIGTLGPGSLNIIAARPAMGKTAFALTIAQ  222 (444)
T ss_dssp             HHCCCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred             HHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf             846878884899983046662188887899


No 450
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=23.19  E-value=23  Score=12.10  Aligned_cols=30  Identities=30%  Similarity=0.460  Sum_probs=0.0

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             874337999970788625789999999723
Q gi|254781225|r  497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      ..+...=+.+.|.-..|||||+..|...+|
T Consensus       173 ~~k~~~ni~v~Ghvd~GKsTl~g~ll~~~G  202 (592)
T 3mca_A          173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELG  202 (592)
T ss_dssp             CCCCEEEEEEECCSSSTHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf             998822899994679788899999998728


No 451
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=23.11  E-value=23  Score=12.09  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=0.0

Q ss_pred             HHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             99999997598743379999707886257899999997
Q gi|254781225|r  487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA  524 (789)
Q Consensus       487 ~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~l  524 (789)
                      |+.+--+|    ....+.++.|+.|+|| ||+-+...+
T Consensus        12 Q~~~~~al----~~~~iv~~~G~AGTGK-T~la~~~al   44 (208)
T 3b85_A           12 QKHYVDAI----DTNTIVFGLGPAGSGK-TYLAMAKAV   44 (208)
T ss_dssp             HHHHHHHH----HHCSEEEEECCTTSST-THHHHHHHH
T ss_pred             HHHHHHHH----CCCCEEEEECCCCCCH-HHHHHHHHH
T ss_conf             99999986----3598189987999739-999999999


No 452
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=23.06  E-value=23  Score=12.09  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=0.0

Q ss_pred             EEEEEEECC-CCCHHHHHHHHHHHH
Q ss_conf             799997078-862578999999972
Q gi|254781225|r  502 RFIHIRGVG-GSGKSTLMNLIKYAF  525 (789)
Q Consensus       502 ~~~~~~G~G-~nGKSt~~~~l~~ll  525 (789)
                      ..+|..|++ +-||||+.-.|...|
T Consensus        27 ~~lfItGT~TgVGKT~Vs~~L~~aL   51 (251)
T 3fgn_A           27 TILVVTGTGTGVGKTVVCAALASAA   51 (251)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             8689986999961999999999999


No 453
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=22.87  E-value=23  Score=12.06  Aligned_cols=46  Identities=24%  Similarity=0.343  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHCCCC-----CCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             9999999999999975987-----433799997078862578999999972
Q gi|254781225|r  480 EEVMDYFTRCVGMALLGGN-----KAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       480 ~e~~~~l~~~~g~~l~g~~-----~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +.++..+.+.+--.|.+..     .....+++.|..|.||+|.+--+...+
T Consensus        72 ~~i~~~v~eeL~~~l~~~~~~~~~~~p~VIl~vG~~G~GKTTT~aKLA~~~  122 (425)
T 2ffh_A           72 EVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCCCCCCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             999999999998500554345456897389996678876100899999999


No 454
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 3fic_Z* 1b23_P* 1ob5_A* 1ttt_A* 1tui_A* 1zc8_Y 1eft_A* 1mj1_A* 1ob2_A* 1dg1_G* 1efc_A* 1ls2_A 1qzd_A 2bvn_A* ...
Probab=22.53  E-value=23  Score=12.02  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=0.0

Q ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHHC
Q ss_conf             874337999970788625789999999723
Q gi|254781225|r  497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG  526 (789)
Q Consensus       497 ~~~~~~~~~~~G~G~nGKSt~~~~l~~llG  526 (789)
                      +.+.+.-+...|.=..||||++..|....|
T Consensus         7 ~~kp~~nivi~GHVD~GKSTL~g~Ll~~~~   36 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAA   36 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             589869999991558708999999985542


No 455
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=22.49  E-value=23  Score=12.01  Aligned_cols=28  Identities=25%  Similarity=0.425  Sum_probs=0.0

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf             3799997078862578999999972330
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQ  528 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~llG~~  528 (789)
                      +...+.-+.||-||||+.--+...+..+
T Consensus         3 kvI~v~s~KGGvGKTtia~nlA~~la~~   30 (263)
T 1hyq_A            3 RTITVASGKGGTGKTTITANLGVALAQL   30 (263)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf             6999989999871999999999999968


No 456
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=22.29  E-value=24  Score=11.99  Aligned_cols=24  Identities=42%  Similarity=0.544  Sum_probs=0.0

Q ss_pred             CEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             3799997078862578999999972
Q gi|254781225|r  501 QRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       501 ~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +.+.|. |.||=||||+.--|...|
T Consensus        42 kiIAVa-GKGGVGKTTtsvNLA~aL   65 (307)
T 3end_A           42 KVFAVY-GKGGIGKSTTSSNLSAAF   65 (307)
T ss_dssp             EEEEEE-CSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEE-CCCCCCHHHHHHHHHHHH
T ss_conf             399998-998757999999999999


No 457
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=20.50  E-value=26  Score=11.75  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=0.0

Q ss_pred             EEEEECCCCCHHHHHHHHHHH
Q ss_conf             999707886257899999997
Q gi|254781225|r  504 IHIRGVGGSGKSTLMNLIKYA  524 (789)
Q Consensus       504 ~~~~G~G~nGKSt~~~~l~~l  524 (789)
                      ++++|+-|+||+++...|...
T Consensus        28 vlI~Ge~GtGK~~~Ar~iH~~   48 (304)
T 1ojl_A           28 VLIHGDSGTGKELVARALHAC   48 (304)
T ss_dssp             EEEESCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
T ss_conf             898898997799999999981


No 458
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=20.42  E-value=26  Score=11.74  Aligned_cols=47  Identities=9%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             98887999999999999999975987433799997078862578999999972
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      |..+++-++-++-+.+++.      .+.+.=.+++|+.+-||+++++-+..-+
T Consensus        21 l~~~igRd~Ei~~l~~iL~------r~~k~n~lLVGepGVGKTaiV~~la~ri   67 (187)
T 2p65_A           21 LDPVIGRDTEIRRAIQILS------RRTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCCCCSCHHHHHHHHHHHT------SSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH------CCCCCCCEEECCCCCCHHHHHHHHHHHH
T ss_conf             9877482999999999985------6678996685588736799999999999


No 459
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=20.39  E-value=26  Score=11.73  Aligned_cols=28  Identities=25%  Similarity=0.446  Sum_probs=0.0

Q ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             7433799997078862578999999972
Q gi|254781225|r  498 NKAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       498 ~~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      ......+++.|+-|.||+|.+-=|...+
T Consensus        99 ~~~~~vi~lvG~~G~GKTTt~aKlA~~~  126 (304)
T 1rj9_A           99 EPKGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             CCSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             7887699952466777411899999998


No 460
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii}
Probab=20.30  E-value=26  Score=11.72  Aligned_cols=46  Identities=24%  Similarity=0.250  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHCC-------CCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             99999999999999759-------87433799997078862578999999972
Q gi|254781225|r  480 EEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGSGKSTLMNLIKYAF  525 (789)
Q Consensus       480 ~e~~~~l~~~~g~~l~g-------~~~~~~~~~~~G~G~nGKSt~~~~l~~ll  525 (789)
                      +.++..+.+-+--.|-+       ....+..+++.|..|.||+|.+--|...+
T Consensus        71 ~~i~kiv~~eL~~lLg~~~~~~~~~~~~p~VIllvGl~GsGKTTT~aKLA~~l  123 (432)
T 2v3c_C           71 EHIIKIVYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             HHHHHHHHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             99999999999987363101101378998699985798776214899999999


Done!