BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid
primase [Candidatus Liberibacter asiaticus str. psy62]
         (789 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040902|gb|ACT57698.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 789

 Score =  746 bits (1926), Expect = 0.0,   Method: Composition-based stats.
 Identities = 789/789 (100%), Positives = 789/789 (100%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
           MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV
Sbjct: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
           GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE
Sbjct: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI
Sbjct: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
           TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET
Sbjct: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240

Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
           RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK
Sbjct: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
           GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV
Sbjct: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD
Sbjct: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
           LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE
Sbjct: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ
Sbjct: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
           NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES
Sbjct: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
           PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL
Sbjct: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
           KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE
Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720

Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
           YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD
Sbjct: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780

Query: 781 NSNIIDFKR 789
           NSNIIDFKR
Sbjct: 781 NSNIIDFKR 789


>gi|317120690|gb|ADV02513.1| phage associated primase [Liberibacter phage SC1]
 gi|317120834|gb|ADV02655.1| phage associated primase [Candidatus Liberibacter asiaticus]
          Length = 790

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 766/790 (96%), Positives = 774/790 (97%), Gaps = 1/790 (0%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
           MP MQWKEQAKQAIHNGFKLIPLRL DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV
Sbjct: 1   MPGMQWKEQAKQAIHNGFKLIPLRLRDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
           GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE
Sbjct: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI
Sbjct: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
           TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET
Sbjct: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240

Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
           RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK
Sbjct: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
           GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV
Sbjct: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD
Sbjct: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
           LLDSSSRFLGEQDGILDLETGQK+KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE
Sbjct: 421 LLDSSSRFLGEQDGILDLETGQKIKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ
Sbjct: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
           NRPPEAGKANPSLIRLMG+R+VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES
Sbjct: 541 NRPPEAGKANPSLIRLMGARVVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
           PASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL
Sbjct: 601 PASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
           KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE
Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720

Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK-EWKSKRIIKGLKLKPAFESVD 779
           YREQELNYDRKRISTRTV LNLKQKGF  G + EK      +  R+I+GLKLKPAFESVD
Sbjct: 721 YREQELNYDRKRISTRTVALNLKQKGFKAGRQWEKPRPNRGRYLRVIEGLKLKPAFESVD 780

Query: 780 DNSNIIDFKR 789
           DN+NIIDFKR
Sbjct: 781 DNNNIIDFKR 790


>gi|317120732|gb|ADV02554.1| phage associated primase/P4 family phage/plasmid primase
           [Liberibacter phage SC2]
 gi|317120793|gb|ADV02614.1| phage associated primase [Candidatus Liberibacter asiaticus]
          Length = 790

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 649/790 (82%), Positives = 700/790 (88%), Gaps = 1/790 (0%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
           M  MQWKEQAKQAIHNGFKLIPLR  DKRP RLGKWEEQLLSSE+IDKLPACGFG VCGV
Sbjct: 1   MSGMQWKEQAKQAIHNGFKLIPLRFRDKRPLRLGKWEEQLLSSEEIDKLPACGFGLVCGV 60

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
           GEQPLYAFDIDSKDEKT N FKDTFEILHGTPIVRIGQKPKILIPFRM+K+G+KKKKT E
Sbjct: 61  GEQPLYAFDIDSKDEKTTNNFKDTFEILHGTPIVRIGQKPKILIPFRMDKDGVKKKKTPE 120

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           S QGHLDILG GQYFVAYNIHP TK+EYTWTTPPHRFK ED PLLS+EDVE   K FQ+ 
Sbjct: 121 SPQGHLDILGYGQYFVAYNIHPITKEEYTWTTPPHRFKAEDLPLLSKEDVECFSKAFQDF 180

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
           T PLVK KKSI P K   NNNNR YTNREITAFLSCF E+FYNGSHD+WIPV+MAVHHET
Sbjct: 181 TTPLVKAKKSIKPVKLGKNNNNRYYTNREITAFLSCFNEDFYNGSHDDWIPVIMAVHHET 240

Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
           RGS KG++IARRWSKQGSTYDE NFNYKWDTFD EE GD AKKRSTF SLFYHH KLIP 
Sbjct: 241 RGSDKGQDIARRWSKQGSTYDEANFNYKWDTFDCEENGDPAKKRSTFASLFYHHRKLIPD 300

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
           GLL  RFSDAYNKA+FS++K GHFLY +D K+WYK+D+ N YIW +T DKI   IM+FLV
Sbjct: 301 GLLEDRFSDAYNKALFSVFKLGHFLYASDIKSWYKRDETNRYIWRITDDKIAGYIMDFLV 360

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           + K D FDL EE  + +   K+PR  +   Y ++N  + S +KSTA +LE+ S F ITSD
Sbjct: 361 AQKNDSFDLCEELVNEDDTKKNPRALYFKVYDKRNACQYSTSKSTANALESKSHFHITSD 420

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
             D++ R++GE+DG+LDLETGQ++ PT+ELYITKSTGTPFVEGEPSQEFLDLVSGYFESE
Sbjct: 421 RFDANLRYIGEKDGVLDLETGQRITPTEELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           EVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ
Sbjct: 481 EVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
           NRPPEAGKANPSLIRLMG+R+VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES
Sbjct: 541 NRPPEAGKANPSLIRLMGARVVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
           PASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL
Sbjct: 601 PASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
           KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE
Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720

Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK-EWKSKRIIKGLKLKPAFESVD 779
           YREQELNYDRKRISTRTV LNLKQKGF  G + EK      +  R+I+GLKLKPAFESVD
Sbjct: 721 YREQELNYDRKRISTRTVALNLKQKGFKAGRQWEKPRPNRGRYLRVIEGLKLKPAFESVD 780

Query: 780 DNSNIIDFKR 789
           DN+NIIDFKR
Sbjct: 781 DNNNIIDFKR 790


>gi|41179390|ref|NP_958698.1| Bbp29 [Bordetella phage BPP-1]
 gi|45569522|ref|NP_996591.1| primase [Bordetella phage BMP-1]
 gi|45580773|ref|NP_996639.1| primase [Bordetella phage BIP-1]
 gi|40950129|gb|AAR97695.1| Bbp29 [Bordetella phage BPP-1]
          Length = 854

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 191/850 (22%), Positives = 329/850 (38%), Gaps = 126/850 (14%)

Query: 4   MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
             ++   +  + NG+ +IP++ G KRP  L  W+   L +  + + P  G G +CG G Q
Sbjct: 3   SDFQTHGRALLGNGYLIIPIKPGHKRPA-LDNWQTARLGAADLTRYPEHGVGVLCGQGAQ 61

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE--- 120
           P+ A D+D+ D + A  F    +   G    R+G  PKIL+ +R   EG  K        
Sbjct: 62  PVVAIDVDTTDAELAARFVAWCQEHLGATCERVGNAPKILLAYRAESEGWGKATGAWFED 121

Query: 121 --STQGHLDILGCGQYFVAYNIHPKTKKEYTWT---TPPHRFKVEDTPLLSEEDVEYLFK 175
               +  L++LG GQ FVAY++HP T + Y WT         +  D P+++E  VE   +
Sbjct: 122 LAGDRHRLEVLGKGQQFVAYHVHPDTGRPYEWTDFFGGLDAMRASDLPVITEAQVEEALQ 181

Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY----------NGS 225
            F+ +       + +   S+T   +      +  + A+    G +            N  
Sbjct: 182 VFEAMAEECGLARVTGSKSRTGLTSAPE---DDPLMAYEPPVGIDLAEARRLVAYVDNED 238

Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN-FNYKWDTFDFEEIGD----- 279
           +D W+ V M++HHE  GS +   +   WS   S Y        +WD+F            
Sbjct: 239 YDTWLKVGMSLHHEFDGSGEALALWDEWSATASNYASSEDVARRWDSFGKSGRNPTTARW 298

Query: 280 -------------TAKKRSTF---TSLFYHHGKLIP-----------------------K 300
                         A+KR+      +L       I                         
Sbjct: 299 LLKIGNQGKRDAVRAEKRTALDDAKALILACADSIDLVNDVARRAGEAAGTDLALRAELA 358

Query: 301 GLLASRFSD----------------------AYNKAMFSIY-----------KKGHFLYT 327
           GL+ +RF +                       +NK    +                 +Y 
Sbjct: 359 GLIRARFKELTDTTLPVADVRAAMAGGRKVVPFNKQRRQMTEFGNAERMLDHYGDGLMYV 418

Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387
            +   W+         W+    +  A +       KE +  L +E +    +++   F+ 
Sbjct: 419 PEIDGWF--------TWTGIYWRRAAGV-ELEHLAKETIRALPDEAKAIESDAERAEFFK 469

Query: 388 -NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
                +R  +  N    S AQS +   +  +    LD +   LG  +G++DL TG+ + P
Sbjct: 470 FCAVSQRAVMVRN--MVSLAQS-DPRVVVGVAD--LDKAPHLLGVGNGVVDLTTGKLLPP 524

Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIH 505
            +   +T  T T +        F   V+   F   +++ +F R +G +L+          
Sbjct: 525 DQAYRVTTITATEYDAAATCPLFEQTVADVFFGDADMIGFFQRLIGYSLMAQPTEDVLAI 584

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
             G G +GKST++  I+   G      +A+           AG A   ++RL G+R V +
Sbjct: 585 PYGSGSNGKSTVLGAIRDVLGEHAKMASADTFLSSGAAGATAGSAREDVLRLRGARFVYV 644

Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
           SE +E  E+    IK MTGG+ + AR  Y  T  E   ++  F+  N    V+  D A W
Sbjct: 645 SEPDEGSELREGLIKSMTGGEPLPARGLYSKTTVEVAPTWVAFMPTNHRPIVKGDDHAIW 704

Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTL-----EAKKWFLKGVKAYISKGLDVDIPEVC 679
           RR + +PF +   ++D +  +  +    L         W ++G  AY  +GL    P   
Sbjct: 705 RRLLPVPFTRNF-DQDLTLTKDPDRAEKLAAEAAGILAWCVRGALAYQRQGLRP--PGAV 761

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
            +A+++ +   D    W+D+CC++G    E +  L  S+  + +      R   S +++ 
Sbjct: 762 RQARDDYKSDMDLLAEWLDECCEVGPAYVESNARLWASWEAFAKARGEL-RFIASAKSLG 820

Query: 740 LNLKQKGFIG 749
             L  KGF  
Sbjct: 821 RRLDSKGFSS 830


>gi|315121955|ref|YP_004062444.1| P4 family phage/plasmid primase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495357|gb|ADR51956.1| P4 family phage/plasmid primase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 686

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 511/686 (74%), Positives = 591/686 (86%), Gaps = 4/686 (0%)

Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
           M K GIKKK+T +S QGHLDILG GQYFVAYNIHPKTK+EYTWTTPP  FK E+ PLLSE
Sbjct: 1   MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
           EDVE+LF+FF+E T P+VK KK I   K      NR+YTNREITAFLSCFGEEF NG+HD
Sbjct: 61  EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120

Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
           EWIPVVMA+HHET+GS +GKE+ARRWSK+GS+YDEENFNYKW TFD EE GD+ KKRSTF
Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFDCEEEGDSEKKRSTF 180

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
            S+FYHH KLIP G+L  RFSDAYNKAMFS++K G+FLY +DTKAWYKKDK N YIW +T
Sbjct: 181 ASIFYHHRKLIPDGILEERFSDAYNKAMFSVFKSGYFLYASDTKAWYKKDKTNRYIWRIT 240

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
            DKI   IM FL+SMK+D FDL EE E+ +   K+PR  +   Y ++N  E S++KSTA 
Sbjct: 241 DDKIAGYIMEFLISMKKDAFDLCEEIENKDGTKKNPRALYLKAYAKRNACEQSRSKSTAN 300

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
           ++EA S F I+S++ D++ R++GE+DGILD+ETGQ++ P +ELYITKSTGTPFVEG+PS 
Sbjct: 301 AIEAKSPFHISSEIFDANLRYIGERDGILDMETGQQITPKEELYITKSTGTPFVEGKPSA 360

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           EF++LVS YFES+EVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNLIK+AFGN
Sbjct: 361 EFMNLVSNYFESKEVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNLIKFAFGN 420

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
           QYVINAEASD+MQNRPPEAGKANPSLIRLMGSR+VIISETNENDE+NAAKIKQMTGGDCM
Sbjct: 421 QYVINAEASDVMQNRPPEAGKANPSLIRLMGSRVVIISETNENDELNAAKIKQMTGGDCM 480

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
           TARLNYGNTYSE+ ASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDA+FAQKL
Sbjct: 481 TARLNYGNTYSEARASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDATFAQKL 540

Query: 648 ETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
           ET+Y LEAKKWF++G+KAYI  G  LDV +PEVC+ AKEEER+GTDTYQAWIDDCCD+G 
Sbjct: 541 ETEYALEAKKWFMEGIKAYIRNGRNLDVYVPEVCINAKEEERRGTDTYQAWIDDCCDVGS 600

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK-EWKSKR 764
           +LWEES  LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG + +K      K   
Sbjct: 601 DLWEESRILAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGREWDKSSSDRGKYLS 660

Query: 765 IIKGLKLKPAFESVDDN-SNIIDFKR 789
           +IKGLKLKPAFE +++  +N++DFK+
Sbjct: 661 LIKGLKLKPAFEDIENEPNNVLDFKK 686


>gi|291541585|emb|CBL14695.1| phage/plasmid primase, P4 family, C-terminal domain [Ruminococcus
           bromii L2-63]
          Length = 774

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 136/783 (17%), Positives = 260/783 (33%), Gaps = 58/783 (7%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           W+       H+G    P+         P     W +   +  +  K      G       
Sbjct: 29  WQSYPDPKSHSGISKKPINPRTGGFAMPNNSDTWSDFETAVRESAKYS----GIGFMFSN 84

Query: 63  QPLYAFDIDSK--------DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114
            P +  D+D          +    N   +    L         +    +I      EG  
Sbjct: 85  SPFFGVDLDDMPNDIQDYQNGGADNIISEFVNTLQSYTEFSQSKTGVHIICKGTLPEG-- 142

Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
            ++  ++  G  ++   G++FV    +  +   Y          +    L    + +   
Sbjct: 143 -RRKAKNDSGGFEMYENGRFFVVTGDY-CSAYAYINDCTESIKPLHSKYLGKATEPQPKL 200

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
           +  +     +    ++   +K  +        +    +  S     F N     W     
Sbjct: 201 RNIEVNLNTVDDIVRAACNAKNGSLFKALYSGDFSAYSSQSEADMAFCNM-LAFWCGCDT 259

Query: 235 -AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF-Y 292
             +    R S   ++   R  + G+TY          +   +          + +     
Sbjct: 260 DKMDSIFRQSGLMRDKWDR-KQSGTTYGIITLQKAV-SGCTQTYNPKQHNDYSISIGEGK 317

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS-LTLDKI 351
               +  + + A  F D  N   F      +  Y    K WY  +     + +   + ++
Sbjct: 318 AVQAVNEEKMRAYTFDDMGNADRFVDLFGDNVRYCYTEKKWYYYNSMKWCVDNIGVVLRM 377

Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
               +  + +       L  + ++ N    S  F  +    R N  +       A   E 
Sbjct: 378 ADKSVEAMKAEAR----LYLQADEENGGDMSKAFEKHMKASRSNKSKK------AMLNEV 427

Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
                +    +D     L    GI++L+ G+      E Y TK T     +      +L 
Sbjct: 428 EHHIPVLPAQMDKYRMALNTPSGIINLKNGEVRAHNPEYYFTKITSVDCSQTAECPRWLA 487

Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            +   F   +E++ Y  + VG +L G    Q    + G G +GKST +++I+  FG+   
Sbjct: 488 FLDDIFAGDKELIRYIQKAVGYSLTGSTAEQCAFFLYGTGRNGKSTFIDVIRDVFGDYAA 547

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
                + ++  R  ++   N  + RL G+R+V   E NE   IN   +KQ+TG D +TAR
Sbjct: 548 NIQPETIMV--RNSQSSAINSDIARLKGARLVTSVEPNEGVRINEGLLKQLTGDDTVTAR 605

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLE 648
             Y   + E    F  ++  N    +R  D   WRR  +IPF+  I     D +   KL 
Sbjct: 606 KLYSEEF-EFKPEFKLWMATNHKPIIRGTDTGIWRRIHMIPFNVQIPEDKVDKNLTHKL- 663

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
                   KW + G   +  +GL   +P   L++  E ++  D   A+I+D C +     
Sbjct: 664 KAEMTAIFKWCIDGCILWQREGLK--MPSAVLQSVREYKREMDVISAFIEDRCVL--EGS 719

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
            ++ +L  +Y+ +      Y    +S    +  L ++           +   K+     G
Sbjct: 720 VQASTLYAAYTSWAGDNNEY---CMSNTKFSTELAKR---------FEKVRGKNYNFFNG 767

Query: 769 LKL 771
           + L
Sbjct: 768 ISL 770


>gi|148252805|ref|YP_001237390.1| putative phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
 gi|146404978|gb|ABQ33484.1| putative Phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
          Length = 749

 Score =  448 bits (1152), Expect = e-123,   Method: Composition-based stats.
 Identities = 141/783 (18%), Positives = 246/783 (31%), Gaps = 62/783 (7%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63
           +   Q       ++PL    KRP           + +++ +     P   +G   G G  
Sbjct: 10  DLVHQFAERDLPVLPLLAEQKRPAIKRGVHGATTNKKELKRYFRNNPQANYGVSTG-GTS 68

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTP-IVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
            ++  DID +  K  ++           P  V +         FR N   I+        
Sbjct: 69  NIFVLDIDGRAGK--HSLSKLISEHGKLPRTVTVLTGSGEHRYFRGNGTPIRNSSGR--L 124

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
              LDI G G Y V       + K Y++        V          +  +         
Sbjct: 125 GEGLDIRGDGGYVVGPGSIHPSGKVYSFKEGRALDDVA-IAKAPPWLLSLISSDRPHQAT 183

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD-EWIPVVMAV-HHET 240
            +  +  +    +                  LS       N   +     +   + +   
Sbjct: 184 RMQLEVPTNNSRRL---AAYLVAAQDRELERLSRAPNHRRNHCLNRSAFKLGQLLPYRIL 240

Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
                 ++++     +    +E        +       +          +          
Sbjct: 241 DEGGCTRKLSE--VARSIGLEESEIIPTIRSGLSAGSRNPRPLHFLKCQIDNPAVAKNES 298

Query: 301 -------GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
                   L   R +D  N   F+       LYT               ++     K   
Sbjct: 299 QTPELTIELAKLRENDTDNAQRFASRWADRILYTP---------GKGWLVFDGKRWKP-D 348

Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
           S++  +   K     ++ E +    +          D          +    A+SL    
Sbjct: 349 SLLECMEFAKITARMIACEAQHLPDDQAKATRRKFADSSLSK-GSLERMIDLAKSL---- 403

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
              +    LD++   L    G +DL TG          +TK             +F   +
Sbjct: 404 -VMVDDSRLDANPWLLNTTTGTIDLRTGDCDDHDPRDLLTKMIPVAADPTAKCPQFRKFL 462

Query: 474 SGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVI 531
           +        +M Y  +C G  L G  + Q F    G  G +GKSTL+NL++   G+    
Sbjct: 463 NRITGGDRALMRYLKKCAGYTLTGSTQEQVFFFCYGKSGSNGKSTLINLLRDMLGDYSRH 522

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
               + + +            L RL G R+V   E N +  ++ AK+K MTGG+ +TAR 
Sbjct: 523 TPTETLLTKQY---DNNIPADLARLAGVRMVTAIEANFDRHLDEAKLKSMTGGEPITARF 579

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLET 649
                Y E   +F  ++V N    VR  D A+WRR  VIPFD  I    +D     KL  
Sbjct: 580 M-RQDYFEFTPAFKLWLVANDMPRVRGTDTAFWRRVRVIPFDVQIPESEKDPELPAKL-R 637

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
                   W ++G KA+ ++GL    P+    A     +  D  + ++ +C  +      
Sbjct: 638 DEFPGVLAWAVRGCKAWQAEGL--AEPQTVKLASGRWLEAADHLKRFVAECLIVDPENRL 695

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
            S SL   YS +  +      + ++ + +  +L++             KE K      GL
Sbjct: 696 PSSSLLNRYSNWCSKNGE---QPLTVQKLNASLREA-------HNFTHKESKHGSEWVGL 745

Query: 770 KLK 772
           KL+
Sbjct: 746 KLR 748


>gi|281419521|ref|ZP_06250534.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
 gi|281406812|gb|EFB37077.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
          Length = 719

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 145/794 (18%), Positives = 257/794 (32%), Gaps = 112/794 (14%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G ++      E+I K  
Sbjct: 7   DAALKYAEANIPVIPLHWICEDGSCSCKVGSNCDSKGKHPLYTGWYKNSTADVEQIRKWW 66

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T   L  T     G   +    F
Sbjct: 67  TKTPYANIGIPTGEKSGWLV-LDVDDGGDETISALEATHGKLPDTVTAVTGSGGR-HYIF 124

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           +  +   +           LD    G   V       +   Y W      F         
Sbjct: 125 KYPEG--RSIPNKTKFAPGLDTRSTGGLIVVAPSIHVSGNRYEWIKDHSPFD-RTLAEAP 181

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
           E  ++ + +    +T                                 S    E   GS 
Sbjct: 182 EWLLKLMERVEVLLTPFEG-----------------------------SSIAAEIKEGSR 212

Query: 227 DEWIPV---VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
           +  +      M V   T  S     +A   ++     DE        +    +     KK
Sbjct: 213 NSTLTSLAGTMRVRGMTEESIYAALLAENNARCNPPLDEAEVKKIAHSVSRYQPNPPMKK 272

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
                                   +D+ N             Y    K W         +
Sbjct: 273 H--------------------YHRTDSGNAERLRDRFGSIIRYCPAFKYW--------LV 304

Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
           +     +        +    +   D+  E       +       +   + +N        
Sbjct: 305 YDGCCWRKETG--ELMQFAIKTARDMLAEASRIEDEAMRKELVRHAM-QSENAGRLKAMI 361

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
             A +LE   I     D LD+    L  ++G+++L+TG+ +   +E Y++K     +   
Sbjct: 362 DVASNLEGLVIMP---DELDADIWKLNCKNGVVNLKTGELLPHKREYYMSKICPVEYKPS 418

Query: 464 EPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
             +  ++D ++     S+E++ Y  + VG +L G    Q    + G G +GKST +N I 
Sbjct: 419 SKAPRWMDFLNTITGGSKELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTIS 478

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
              G+        + + +            + RL G+R+V   E NE   ++ A IK  T
Sbjct: 479 ELLGDYARNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKSFT 534

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RD 640
           GGD +TAR  YG  Y +    FTPF+V N    +R+   + WRR  +IPF   I    +D
Sbjct: 535 GGDRITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKD 593

Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
                KL  +       W ++G   +  +GL  ++P+   +A E  R+  DT+ ++I++C
Sbjct: 594 KQLPAKL-REELPGILSWAVEGCLLWQKEGL--EMPDEVKEATEGYREEMDTFSSFIEEC 650

Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
           C + E     + S+  +Y  +  +  +Y    +  +     + ++GF             
Sbjct: 651 CIVEEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRSGA 701

Query: 761 KSKRIIKGLKLKPA 774
              R   G+ L   
Sbjct: 702 NGSRDWHGIGLADE 715


>gi|227528969|ref|ZP_03959018.1| phage primase [Lactobacillus vaginalis ATCC 49540]
 gi|227351106|gb|EEJ41397.1| phage primase [Lactobacillus vaginalis ATCC 49540]
          Length = 803

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 145/805 (18%), Positives = 273/805 (33%), Gaps = 97/805 (12%)

Query: 5   QWKEQAKQAIH--NGFKLIPLRLG---DKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVC 58
           QW    +  +   N +  IPL      D +      W +   + + IDK P A G  F  
Sbjct: 45  QWGNYHRIWVEKRNKYTKIPLNPWNGEDGKSNDSSTWSDFDTALQAIDKYPQADGLAFYF 104

Query: 59  GVGEQPLYAFDIDSKDEKTAN---------TFKDTFEILHGTPIVRIGQKPKILIPFRMN 109
                     DID   ++             + +    L     + I    + +      
Sbjct: 105 A---NGYVGLDIDHIADELDKVREGDSDPENYVNKAHQLTKGSYMEISMSGEGIHCI--- 158

Query: 110 KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED 169
                K       +G+ ++   G++F                       +   P +   D
Sbjct: 159 --FKGKIPGNRRRKGNYEMYQSGRFFALTG-----------------NTLNSQPTIKSLD 199

Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI----TAFLSCFGEEFYNGS 225
            E + K +   T     DK    P  +     N    +  I     +      + F  G 
Sbjct: 200 HEEMAKLY---THYFGNDKVMPFPQNSPQITTNDLSLDEVISRAERSSSGKRFKMFMEGG 256

Query: 226 HDEWI----PVVMAVHH-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF---- 272
            +++        MA  +       R  ++   I R+ S     +D +     +       
Sbjct: 257 WEDFYPSHSEADMAFANDLAFWTGRDFNQMDTIFRQSSLMRPKFDSKRGKTTYGIALLNK 316

Query: 273 ---DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329
              +  ++ +   K      L + +     K      + D  N   F      +F Y+  
Sbjct: 317 AINETSDVFNPHGKPEFNYDLSFLNNDDSKKKHPQRSWDDMGNAQRFMDMYGDNFKYSYI 376

Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389
            K +Y  +         +  +   + +         + ++  E      + K      + 
Sbjct: 377 DKCFYYYNN--------SYWEPDQTGI-VEKCADNVISNMKNEKIHVAPDVKDEDAKKDW 427

Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
           +   +    N   K+  + L       +     D     L  + G +DL +G      ++
Sbjct: 428 EKFLKKSRSNRSKKNMLEEL--KHHIPVLHSQFDKEIMLLNTKSGYVDLNSGVLHDHDRD 485

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
              ++ T   + +     E+   +   F + EE++ Y  + VG +  G  K Q    + G
Sbjct: 486 KMFSQQTAAEYTDNIDCPEWDKFLHQVFNNNEELIHYIQKAVGYSATGSVKEQVMFILYG 545

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            G +GKS  +N I    G        +S +++N       AN  + RL G+R+VI SE N
Sbjct: 546 NGRNGKSVFINTIADILGTYAETMNVSSIMVKNN----NGANSDIARLEGARLVISSEAN 601

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           E   ++   +KQ+TGGD + AR  YGN + E    F  ++  N    +R  D+  WRR +
Sbjct: 602 EGSRLDEGLLKQLTGGDKIVARHLYGNEF-EFNPEFKLWMATNHKPLIRGTDEGIWRRIM 660

Query: 629 VIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
           +IPF   I     D     KL+         W ++G   + ++GL+   PE+  KA +E 
Sbjct: 661 LIPFTVQIPKDKVDKDLKYKLQR-EGTGILNWIVQGAMMWQAEGLNP--PEIVTKASQEY 717

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           +   D    ++ + C+ G +    +  L   Y E+  +   Y             + ++ 
Sbjct: 718 KDEMDVVSYFVSEKCETGSDYKVPAGELFNVYREWANESGEYS------------MPKQK 765

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKL 771
           F   +K++   K   + R   GL++
Sbjct: 766 FGREMKKKFEYKRTMNGRYYLGLRI 790


>gi|125974487|ref|YP_001038397.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC
           27405]
 gi|125714712|gb|ABN53204.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC
           27405]
          Length = 717

 Score =  442 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 151/791 (19%), Positives = 261/791 (32%), Gaps = 106/791 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G ++      E+I K  
Sbjct: 5   DAALKYAEANIPVIPLHWICEDGSCSCKVGSNCDSKGKHPLYTGWYKNSTADIEQIKKWW 64

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D    +T +  + T   L  T     G   +    F
Sbjct: 65  TKTPNANIGIPTGEKSGWLV-LDVDDGGNETLSALEATHGKLPDTVTAVTGSGGR-HYVF 122

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           +  +   +           LD    G   VA      +   Y W      F         
Sbjct: 123 KYPQG--RSIPNKTKFVPGLDTRSTGGLIVAAPSIHVSGNRYEWIKDHSPFD-----RTP 175

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
            E  E+L K  +   V L   + S I ++    + N        +   S  G     G  
Sbjct: 176 AEAPEWLLKLMEREEVLLTPFEGSSITAEIMEGSRN--------STLTSLAGTMRARGMT 227

Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
           +E I   +   +  R +                 DE        +    +     KK   
Sbjct: 228 EEGIYAALLAENNARCNPPL--------------DEAEVRNIVHSVSRYQPNPPMKKH-- 271

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
                                +D+ N             Y    K W         ++  
Sbjct: 272 ------------------YHRTDSGNAERLRDRFGSIIRYCPAFKYW--------LVYDG 305

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
              +        +    +   D+  E       +       +   + +N          A
Sbjct: 306 CCWRKETG--ELMQFAIKTARDMLAEASQIEDEATRKELV-HHAMQSENAGRLKAMIDVA 362

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
            +LE      I  D LDS    L  ++G++DL+TG+ +   +E Y++K     +     +
Sbjct: 363 SNLEG---LIIMPDELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICPVEYSPESKA 419

Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
             +++ ++     S E++ Y  + VG +L G    Q    + G G +GKST +N I    
Sbjct: 420 PRWIEFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLL 479

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
           G+        + + +            + RL G+R+V   E NE   ++ A IK  TGGD
Sbjct: 480 GDYARNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKSFTGGD 535

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643
            +TAR  YG  Y +    FTPF+V N    +R+   + WRR  +IPF   I    +D   
Sbjct: 536 RITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQL 594

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
             KL  +       W ++G   +  +GL  ++P+   +A E  R+  DT+ ++I++CC +
Sbjct: 595 PAKL-REELPGILSWAVEGCLLWQKEGL--EMPDEVKEATEGYREEMDTFSSFIEECCIV 651

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
            E     + S+  +Y  +  +  +Y    +  +     + ++GF                
Sbjct: 652 EEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRSGANGS 702

Query: 764 RIIKGLKLKPA 774
           R   G+ L   
Sbjct: 703 RDWHGIGLADE 713


>gi|331701892|ref|YP_004398851.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129235|gb|AEB73788.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL
           B-30929]
          Length = 767

 Score =  441 bits (1134), Expect = e-121,   Method: Composition-based stats.
 Identities = 139/788 (17%), Positives = 273/788 (34%), Gaps = 82/788 (10%)

Query: 15  HNGFKLIP---LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID 71
            N +  IP   L  G  R      W +   + + +      G  F            DID
Sbjct: 27  RNKYTKIPHNALDGGAGRTNDPSTWTDYQTALKALQTYKMDGLAFYFA---NGYVGLDID 83

Query: 72  SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--FRMNKEGIKKKKTTESTQGHLDIL 129
              ++        ++      ++ + +    +      ++     K       +G++++ 
Sbjct: 84  HIGDELEKYAAQDYQQNEVQDVLTMTKSYVEISLSGKGIHAIFKGKIPGDRRRKGNVEMY 143

Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189
             G++F       KT   Y+          +     + E ++ ++K          +   
Sbjct: 144 ESGRFFALTG---KTIGPYS----------DRINTPNSEVMKLIYK------HYFGESNV 184

Query: 190 SIIPSKTWTNNNNRQYTNREITAFLSCFGEEF-------YNGSHDEWIPVVMAVHH---- 238
             +P++     N+         A LS  G+ F       + G +       +A  +    
Sbjct: 185 VKLPNQAPIRPNDLSVDEIIKRAELSRTGKRFKMFMHGGWEGFYTSHSEADLAFSNDLAF 244

Query: 239 -ETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLF 291
              R  +K  EI R+ S     YDE++    +       + +        ++        
Sbjct: 245 WTGRDFNKMDEIFRKSSLMRPKYDEKHGKTTYGVSLLNKSINETRETFNPQQHPLHKYNL 304

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
                   K L    + D  N   F         Y+   K+WY          + +  ++
Sbjct: 305 KFLQSKPKKKLPPRSWDDTGNADRFIDVFGNLVKYSYVDKSWYFY--------NGSYWEM 356

Query: 352 TASI--MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
                   F+    +++ +            K+   W     + ++        S     
Sbjct: 357 DDQGKAAQFVDMTVDNMKNEKLHVAAGVDPEKAKVAWEKFLKKSRSHAAKQAMIS----- 411

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
           E      +     D     L   +G +DL +G       +   +  T   + +     E+
Sbjct: 412 EVQHRVPVLHGQFDQDKTLLNTVNGYIDLTSGILKDHDIKKMFSHQTSVEYTDKIDCPEW 471

Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
            + ++  F   +E++ Y  + VG +  G  K Q    + G G +GKS  ++ I    G  
Sbjct: 472 DEFLNQIFAGDQELIHYIQKAVGYSATGSIKEQVMFILYGNGRNGKSIFIDTISDILGTY 531

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                  S +++        AN  + RL  +R+V  SE NE   ++   +KQ+TGGD +T
Sbjct: 532 AKSMQADSIMVRQNK---SGANSDIARLESARLVTSSEPNEGVRLDEGLVKQLTGGDKVT 588

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQK 646
           AR  YG  + E    F  ++  N    +R  DD  WRR ++IPF   I +   D +   K
Sbjct: 589 ARYLYGKEF-EFKPQFKLWLATNHKPIIRGTDDGIWRRLMLIPFKVKIPDGQVDKNLKDK 647

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           L+   ++    W ++G   +  +GL+   P    +A  + R+  D    ++DDCC++ ++
Sbjct: 648 LKR-ESVGILNWIVEGCLLWQREGLNP--PISVTRASRQYREEMDVISLFVDDCCEVSDS 704

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
               +  L K Y  + +    Y    +S +  +  +KQK            K+  + R  
Sbjct: 705 YRAPAGELFKKYQSWAKDNSEYS---MSKQKFSREMKQK---------FEFKKTMTGRFY 752

Query: 767 KGLKLKPA 774
           +G+K+K  
Sbjct: 753 EGIKIKTD 760


>gi|125975329|ref|YP_001039239.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC
           27405]
 gi|125715554|gb|ABN54046.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC
           27405]
          Length = 717

 Score =  440 bits (1130), Expect = e-121,   Method: Composition-based stats.
 Identities = 145/791 (18%), Positives = 258/791 (32%), Gaps = 106/791 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G ++      E+I K  
Sbjct: 5   DAALKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQIKKWW 64

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T   L  T     G   +    F
Sbjct: 65  TKTPNANIGIPTGEKSDWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGSGGR-HYVF 122

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
              K   +           LD+   G           +   Y W      F+    P  +
Sbjct: 123 IYPKG--RSIPNKTKFAPGLDMRSTGGLIAVAPSIHISGNRYEWLEGHSPFE--RIPAEA 178

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
              +  L +  + +  P           +   N+              S  G     G  
Sbjct: 179 PAWLLKLMERVEVLLTPFEGSSIIAEIKEGNRNST-----------LTSLAGTMRARGMT 227

Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
           +E I   +   +  R +                 DE        +    +     KK   
Sbjct: 228 EESIYAALLAENNARCNPPL--------------DEAEVRKIAHSVSRYQPNPPMKKH-- 271

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
                                +D+ N             Y    K W         ++  
Sbjct: 272 ------------------YHRTDSGNAERLRDRFGEIIRYCPAFKYW--------LVYDG 305

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
              +        +    +   D+  E       +       +   + +N          A
Sbjct: 306 CCWRKETG--ELMQFAIKTARDMLAEASRIEDEAARKELVRHAM-QSENAGRLKAMIDVA 362

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
            +LE   I     D +DS    L  ++G++DL+TG+ +   +E Y++K     +     +
Sbjct: 363 SNLEGMVIMP---DEIDSDIWKLNCRNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKA 419

Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
            ++++ ++     S+E++ Y  + VG +L G    Q    + G G +GKST +N I    
Sbjct: 420 PKWMEFLNTITGGSKELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLL 479

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
           G+        + + +            + RL G+R+V   E NE   ++ A IK  TGGD
Sbjct: 480 GDYARNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKSFTGGD 535

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643
            +TAR  YG  Y +    FTPF+V N    +R+   + WRR  +IPF   I    +D   
Sbjct: 536 RITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQL 594

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
             KL  +       W ++G   +  +GL  ++P+   KA E  R+  DT+ ++I++CC +
Sbjct: 595 PAKL-REELPGILSWAVEGCLLWQKEGL--NMPDEVKKATEGYREEMDTFSSFIEECCIV 651

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
            E     + S+  +Y  +  +  +Y    +  +     + ++GF                
Sbjct: 652 EEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRSGANGS 702

Query: 764 RIIKGLKLKPA 774
           R   G+ L   
Sbjct: 703 RDWHGIGLADE 713


>gi|281419011|ref|ZP_06250029.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
 gi|281407468|gb|EFB37728.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
          Length = 719

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 150/791 (18%), Positives = 260/791 (32%), Gaps = 106/791 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G ++      E+I K  
Sbjct: 7   DAALKYAEANIPVIPLHWICEDGSCSCKVGSNCDSKGKHPLYTGWYKNSTADIEQIKKWW 66

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D    +T +  + T   L  T     G   +    F
Sbjct: 67  TKTPNANIGIPTGEKSGWLV-LDVDDGGNETLSALEATHGKLPDTVTAVTGSGGR-HYVF 124

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           +  +   +           LD    G   VA      +   Y W      F         
Sbjct: 125 KYPQG--RSIPNKTKFVPGLDTRSTGGLIVAAPSIHVSGNRYEWIKAHSPFD-----RTP 177

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
            E  E+L K  +   V L   + S I ++    + N        +   S  G     G  
Sbjct: 178 AEAPEWLLKLMEREEVLLTPFEGSSITAEIMEGSRN--------STLTSLAGTMRARGMT 229

Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
           +E I   +   +  R +                 DE        +    +     KK   
Sbjct: 230 EEGIYAALLAENNARCNPPL--------------DEAEVRNIVHSVSRYQPNPPMKKH-- 273

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
                                +D+ N             Y    K W         ++  
Sbjct: 274 ------------------YHRTDSGNAERLRDRFGSIIRYCPAFKYW--------LVYDG 307

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
              +        +    +   D+  E       +       +   + +N          A
Sbjct: 308 CCWRKETG--ELMQFAIKTARDMLAEASQIEDEATRKELV-HHAMQSENAGRLKAMIDVA 364

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
            +LE      I  D LDS    L  ++G++DL+TG+ +   +E Y++K     +     +
Sbjct: 365 SNLEG---LIIMPDELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICPVEYSPESKA 421

Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
             +++ ++     S E++ Y  + VG +L G    Q    + G G +GKST +N I    
Sbjct: 422 PRWIEFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLL 481

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
           G+        + + +            + RL G+R+V   E NE   ++ A IK  TGGD
Sbjct: 482 GDYARNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKSFTGGD 537

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643
            +TAR  YG  Y +    FTPF+V N    +R+   + WR   +IPF   I    +D   
Sbjct: 538 RITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRHIKLIPFTVTIPEDKKDKQL 596

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
             KL  +       W ++G   +  +GL  ++P+   +A E  R+  DT+ ++I++CC +
Sbjct: 597 PAKL-REELPGILSWAVEGCFLWQKEGL--EMPDEVKEATEGYREEMDTFSSFIEECCIV 653

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
            E     + S+  +Y  +  +  +Y    +  +     + ++GF                
Sbjct: 654 EEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRSGANGS 704

Query: 764 RIIKGLKLKPA 774
           R   G+ L   
Sbjct: 705 RDWHGIGLADE 715


>gi|227522313|ref|ZP_03952362.1| primase [Lactobacillus hilgardii ATCC 8290]
 gi|227090520|gb|EEI25832.1| primase [Lactobacillus hilgardii ATCC 8290]
          Length = 767

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 137/788 (17%), Positives = 274/788 (34%), Gaps = 82/788 (10%)

Query: 15  HNGFKLIP---LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID 71
            N +  IP   L  G  +      W +   + + +      G  F            DID
Sbjct: 27  RNKYTKIPHNALDGGAGKTNDPSSWTDYQTALKALKTYQMDGLAFYFA---NGYVGLDID 83

Query: 72  SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--FRMNKEGIKKKKTTESTQGHLDIL 129
              ++        ++      ++ + +    +      ++     K       +G++++ 
Sbjct: 84  HIGDELERYAAQDYQQNEVQDVLTMTKSYVEISLSGTGIHAIFKGKIPGDRRRKGNVEMY 143

Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189
             G++F       +T   Y+          +     + E ++ ++K          ++  
Sbjct: 144 ESGRFFALTG---RTVGPYS----------DRINTPNSEVMKLIYK------HYFGENNV 184

Query: 190 SIIPSKTWTNNNNRQYTNREITAFLSCFGEEF-------YNGSHDEWIPVVMAVHH---- 238
             +P++     N+         A LS  G+ F       ++G +       +A  +    
Sbjct: 185 VKLPNQAPIRPNDLSVDEIIKRAELSRTGKRFKMFMEGGWDGFYTSQSEADLAFSNDLAF 244

Query: 239 -ETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLF 291
              R  +K  +I R+ S     YDE++    +       + +        ++        
Sbjct: 245 WTGRDFNKMDQIFRKSSLMRPKYDEKHGKTTYGVSLLNKSINETRETFNPQQHPLHKYNL 304

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
                   K L    + D  N   F         Y+   K+WY          + +  ++
Sbjct: 305 KFLQSKPKKKLPPRSWDDTGNADRFIDVFGNLVKYSYIDKSWYFY--------NGSYWEM 356

Query: 352 TASI--MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
                   F+    +++ +            K+   W     + ++        S     
Sbjct: 357 DDQGKAAQFVDMTVDNMKNEKLHVAAGVDPEKAKVAWEKFLKKSRSHAAKQAMIS----- 411

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
           E      +     D     L   +G +DL +G       +   +  T   + +     E+
Sbjct: 412 EVQHRVPVLHGQFDQDKTLLNTVNGYIDLTSGILKDHDIKKMFSHQTSVEYTDKIDCPEW 471

Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
            + ++  F   +E++ Y  + VG +  G  K Q    + G G +GKS  ++ I    G  
Sbjct: 472 DEFLNQIFAGDQELIHYIQKAVGYSATGSIKEQVMFILYGNGRNGKSIFIDTISDILGTY 531

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                  S +++        AN  + RL  +R+V  SE NE   ++   +KQ+TGGD +T
Sbjct: 532 AKSMQADSIMVRQNK---SGANSDIARLESARLVTSSEPNEGVRLDEGLVKQLTGGDKVT 588

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQK 646
           AR  YG  + E    F  ++  N    +R  DD  WRR ++IPF   I +   D +   K
Sbjct: 589 ARYLYGKEF-EFKPQFKLWLATNHKPIIRGTDDGIWRRLMLIPFKVKIPDGQVDKNLKDK 647

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           L+   ++    W ++G   +  +GL+   P    +A  + R+  D    ++DDCC++ +N
Sbjct: 648 LKR-ESVGILNWIVEGSLLWQREGLNP--PISVTRASRQYREEMDVISLFVDDCCEVSDN 704

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
               +  L K Y  + +    Y             + ++ F   IK++   K+    R  
Sbjct: 705 YRSPAGELFKKYQSWAKDNSEYS------------MSKQKFSREIKQKFEFKKTMKGRFY 752

Query: 767 KGLKLKPA 774
           +GLK+K  
Sbjct: 753 EGLKIKTD 760


>gi|292491152|ref|YP_003526591.1| phage/plasmid primase, P4 family [Nitrosococcus halophilus Nc4]
 gi|291579747|gb|ADE14204.1| phage/plasmid primase, P4 family [Nitrosococcus halophilus Nc4]
          Length = 715

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 146/778 (18%), Positives = 257/778 (33%), Gaps = 99/778 (12%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWE-----EQLLSSEKIDKLPACGFGFVCGVGE 62
             A      G++L+P+    K P     W      +  +  +   + P    G   G   
Sbjct: 6   SHAITYAQQGYRLLPVTPNGKVPLLKE-WTKKATRDPAILEDYWRRWPKANIGLATGEDS 64

Query: 63  QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI---GQKPKILIPFRMNKEGIKKKKTT 119
              +  D+D K         +  E  +G     +            F+     +  +   
Sbjct: 65  -GCFVLDVDVKKGAPGEQSLEELESEYGVLPETLKAKTPSGGFHYFFQHPGGRLGNRA-- 121

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
            + +  LDI G G Y +      +  K Y W                +  +E L     +
Sbjct: 122 -NFRPGLDIRGDGGYVLVAPSVVE-GKAYNWLNEGTP-----PAEAPDWLLE-LLHEGPK 173

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239
            TVP    +     ++   N++  +Y      A L   G  +          +  A    
Sbjct: 174 PTVPGGAAQALKGVAEGQRNDSVFRY-----AASLLHRGLRYEEAQ----TLIGKA---- 220

Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP 299
                                               +      +      L   +G+  P
Sbjct: 221 ----------------------------------AGKCNPPLPEDEALRCLDSAYGRYSP 246

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
                   ++  N             Y            ++  +W+ T  +I+       
Sbjct: 247 T--PQRPLTELGNAERLVDRFGEVVRYLPA--------YHHWLLWNGTHWQISEKG-EIE 295

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
             +   V  +  E  D   ++             +     S   S A +LE     ++  
Sbjct: 296 QLVHAVVRGIKVEA-DAETDTTRKENLIKHGRNSERKTAISNMLSLAATLEG---IALAP 351

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE- 478
             LD+     G ++G++DL TGQ   P    Y+TK     F  G     +   V      
Sbjct: 352 HQLDADPYAFGVENGVVDLRTGQLRPPNTVDYLTKFGHVGFQPGAQCPRWEHFVLEVMGG 411

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            ++++ +  R VG  L+GGN  Q    + G G +GKSTL+ +I+   G+       A   
Sbjct: 412 DKDLVSFLQRAVGATLVGGNSDQVIFILHGGGANGKSTLLRIIQTLMGSYARAAGNA-LF 470

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
             NR    G     ++RL  +R+V+ SE  E + +N   +K+MTG D +T R+ YG    
Sbjct: 471 TVNRFQNQGGPREDIVRLKDARMVLTSELGEGEILNEDLVKRMTGDDTLTGRVPYGKASI 530

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656
           E    FTP++  N    +R  D A WRR  +IPF++      +D   +  L  +      
Sbjct: 531 EFRPQFTPWMATNHKPIIRGDDHAIWRRVKLIPFEQTFAGKKQDKGLSHAL-LQELPGIL 589

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
            W ++G  A+   GL    P+V  +A  E R   D    W+++ C  G     ++  L +
Sbjct: 590 NWAIQGCLAWQKGGLTP--PQVVEEATREYRSEMDLLGEWLEERCVQGAEHKAKNADLYQ 647

Query: 717 SYSEY--REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
            Y ++   +  +   +  +  R     L  KGF           + +  R  +G+  K
Sbjct: 648 DYLDWSEAQYGIRGKKHCLDPRVFGRKLAAKGFT--------RIKIQGGRGFQGIACK 697


>gi|281419305|ref|ZP_06250320.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
 gi|281406925|gb|EFB37188.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
          Length = 719

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 145/796 (18%), Positives = 257/796 (32%), Gaps = 106/796 (13%)

Query: 3   VMQWKEQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEK 45
            M   + A +       ++PL                     K P   G ++      E+
Sbjct: 2   KMTMMDAAIKYAEANIPVMPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTADMEQ 61

Query: 46  IDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK 101
           I K     P    G   G     L   D+D   ++T +  + T   L    +  +     
Sbjct: 62  IRKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGDETISALEATHGKL-PDTVTAVTGSGG 119

Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
               F+  K   +           LD    G   V       +  +Y W      F    
Sbjct: 120 WHYVFKYPKG--RSIPNKTKFASGLDTRSTGGLIVVAPSIHVSGNQYQWLEGHSPFD-RT 176

Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
                   ++ L +  + +  P           +   N+              S  G   
Sbjct: 177 PAEAPAWLLK-LMERVEVLLTPFEGSSIIAEIKEGSRNST-----------LTSLAGSMR 224

Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
             G  +E I   +   ++ R +                 DE        +    +     
Sbjct: 225 ARGMTEESIYAALLAENKARCNPPL--------------DEAEVKKIAHSVSRYQPNPPM 270

Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
           KK                        +D+ N             Y    K W        
Sbjct: 271 KKH--------------------YHRTDSGNAERLRDRFGSIIRYCPAFKYW-------- 302

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
            ++     +        +    +   D+  E       +       +   + +N      
Sbjct: 303 LVYDGCCWRKETG--ELMQFAIKTARDMLAEASRIEDEAARKELVRHAM-QSENAGRLKA 359

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
               A +LE   I     D LDS    L  ++G++DL+TG+ +   +E Y++K     + 
Sbjct: 360 MIDVASNLEGMVIMP---DELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICPVEYK 416

Query: 462 EGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               +  ++D ++     S E++ Y  + VG +L G    Q    + G G +GKST +N 
Sbjct: 417 PSSKAPRWMDFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNT 476

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           I    G+        + + +            + RL G+R+V   E NE   ++ A IK 
Sbjct: 477 ISELLGDYTRNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKS 532

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-- 638
            TGGD +TAR  YG  Y +    FTPF+V N    +R+   + WRR  +IPF   I    
Sbjct: 533 FTGGDRITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDK 591

Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
           +D     KL  +       W ++G   +  +GL  ++P+   KA E  R+  DT+ ++I+
Sbjct: 592 KDKQLPAKL-REELPGILSWAVEGCLLWQKEGL--NMPDEVKKATEGYREEMDTFSSFIE 648

Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
           +CC + E     + S+  +Y  +  +  +Y    +  +     + ++GF           
Sbjct: 649 ECCIVEEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRS 699

Query: 759 EWKSKRIIKGLKLKPA 774
                R   G+ L   
Sbjct: 700 GANGSRDWHGIGLADE 715


>gi|125975346|ref|YP_001039256.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC
           27405]
 gi|125715571|gb|ABN54063.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC
           27405]
          Length = 717

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 142/791 (17%), Positives = 257/791 (32%), Gaps = 106/791 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       ++PL                     K P   G ++      E+I K  
Sbjct: 5   DAAIKYAEANIPVMPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTADMEQIRKWW 64

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T+  L    +  +         F
Sbjct: 65  TKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATYGKL-PDTVTAVTGSGGWHYVF 122

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           +  K   +           LD    G   V       +  +Y W      F         
Sbjct: 123 KYPKG--RSIPNKTKFASGLDTRSTGGLIVVAPSIHVSGNQYQWLEGHSPFD-RTPAEAP 179

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
              ++ L +  + +  P           +   N+              S  G     G  
Sbjct: 180 AWLLK-LMERVEVLLTPFEGSSIIAEIKEGSRNST-----------LTSLAGSMRARGMT 227

Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
           +E I   +   ++ R +                 DE        +    +     KK   
Sbjct: 228 EESIYAALLAENKARCNPPL--------------DEAEVKKIAHSVSRYQPNPPMKKH-- 271

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
                                +D+ N             Y    K W         ++  
Sbjct: 272 ------------------YHRTDSGNAERLRDRFGSIIRYCPAFKYW--------LVYDG 305

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
              +        +    +   D+  E       +       +   + +N          A
Sbjct: 306 CCWRKETG--ELMQFAIKTARDMLAEASRIEDEAARKELVRHAM-QSENAGRLKAMIDVA 362

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
            +LE   I     D LDS    L  ++G++DL+TG+ +   +E Y++K     +     +
Sbjct: 363 SNLEGMVIMP---DELDSDIWKLNCKNGVVDLKTGELLSHKREYYMSKICPVEYKPSSKA 419

Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
             ++D ++     S E++ Y  + VG +L G    Q    + G G +GKST +N +    
Sbjct: 420 PRWMDFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTVSDLL 479

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
           G+        + + +            + RL G+R+V   E NE   ++ A IK  TGGD
Sbjct: 480 GDYARNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKSFTGGD 535

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643
            +TAR  YG  Y +    FTPF+V N    +R+   + WRR  +IPF   I    +D   
Sbjct: 536 RITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQL 594

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
             KL  +       W ++G   +  +GL  ++P+   +A +  RQ  DT+ ++I++CC +
Sbjct: 595 PAKL-REELPGILSWAVEGCLIWQKEGL--NMPDEVKEATDGYRQEMDTFSSFIEECCIV 651

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
            E     + S+  +Y  +  +  +Y    +  +     + ++GF                
Sbjct: 652 EEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRSGANGS 702

Query: 764 RIIKGLKLKPA 774
           R   G+ L   
Sbjct: 703 RDWHGIGLAEE 713


>gi|56963140|ref|YP_174867.1| hypothetical protein ABC1368 [Bacillus clausii KSM-K16]
 gi|56909379|dbj|BAD63906.1| phage-related protein [Bacillus clausii KSM-K16]
          Length = 791

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 132/809 (16%), Positives = 270/809 (33%), Gaps = 67/809 (8%)

Query: 5   QWKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           QW    K+        +P +   +  +      W     + +  +K    G GF+    +
Sbjct: 17  QWIVWRKETRKGKTTKVPYKADGRHAKANDKQHWTTFENAVKAYEKGEFDGIGFMF-SSD 75

Query: 63  QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
            P    D+D   +D   ++  +   + L     +       + I  +            +
Sbjct: 76  DPFIGIDLDHCIEDGAYSDDARKIVDQLDSYTEL-SPSGDGLHIIVKGKIPLRGPGTGKK 134

Query: 121 STQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
           + +  +++   G+YF     +   T           + + +      +  +E   K    
Sbjct: 135 NVERGIEVYRHGRYFTFTGNVVHSTG---------VQERSDALKDFWQAYMEEKPKKVST 185

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD--------EWIP 231
            + P  + + S +  +             +I A          + S D         W  
Sbjct: 186 PSPPQQRTRTSDLSERELWEKMFNSKKGADIKALFDGHLINDDHSSSDLALCNHLAFWTD 245

Query: 232 VVMA-VHHETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTS 289
              A +    R S   ++   R  +  GSTY +        +     I D   ++     
Sbjct: 246 ADEAKMDRMFRESGLMRDKWDRQANSDGSTYGQITIRNA-ASQCPSTISDFVPQQREPYQ 304

Query: 290 LFYHHGKLIPKGLLAS--RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
           +F+               R S+  N             Y  + +           IW   
Sbjct: 305 VFFPQAGDDEFKSSKPFFRLSELGNAERIVYEHGKDIKYCPERE---------WLIWDGK 355

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
              I  S           +  + +E    +++          D+ ++    + +  S   
Sbjct: 356 RW-IEDSKKEIESITARTLRAIYKEANQASQDDDKQMAKKLYDWAQKCERRSVRVNSI-- 412

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
            L+   + S+T++ LD        ++G++DL+TG+ +   ++   TK +   + +     
Sbjct: 413 -LDMRPMVSVTNEELDKHPYLFNCKNGVIDLKTGELLSHDRKYLFTKISDVEYDKSAKCP 471

Query: 468 EFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
            ++  +   F+ +      E++ +  + +G  L G    Q+   + G G +GKST +N I
Sbjct: 472 NWIKFLESIFQDDQGNVDYELIRFMQKAIGYTLTGDISEQQMFFLFGTGRNGKSTFINTI 531

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
           +   G         + I   R       N  + RL  +R V   E+ E  +++ + +KQ+
Sbjct: 532 QRILGAYGKQTNSDTFI---RKKNDSGINNDIARLDKARFVSAVESEEGQQLSESLVKQI 588

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639
           TGG+ MTAR      + E    F  F   N    +R  D+  WRR   IPF   I     
Sbjct: 589 TGGERMTARFM-RQEFFEFTPEFKVFFTTNHPPVIRGSDEGIWRRICQIPFKVTIPKSQV 647

Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
           D    QKLE         W ++G   +  +GL  + P+   +A +  R+  D    ++++
Sbjct: 648 DRRLPQKLE-AEMPGILAWAVEGCLLWQKEGL--EHPKSIKQATQAYREDMDILGPFLEE 704

Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
            C + E    E+  +   Y ++  +   ++   +  R     L+ +GF      +     
Sbjct: 705 KCIVSEIAEIEAKEIYNEYKDFCFKNGEFE---LKNRAFYRLLESRGFKKKKGAKNK--- 758

Query: 760 WKSKRIIKGLKLKPAFESVDDNSNIIDFK 788
                   G+ L      +     + +F 
Sbjct: 759 ----TFFVGVSLLKKNPDLRVIERVTEFD 783


>gi|313903458|ref|ZP_07836849.1| phage/plasmid primase, P4 family [Thermaerobacter subterraneus DSM
           13965]
 gi|313466279|gb|EFR61802.1| phage/plasmid primase, P4 family [Thermaerobacter subterraneus DSM
           13965]
          Length = 849

 Score =  430 bits (1106), Expect = e-118,   Method: Composition-based stats.
 Identities = 144/773 (18%), Positives = 253/773 (32%), Gaps = 82/773 (10%)

Query: 9   QAKQAIHNGFKLIPL-----------------RLGD--KRPQRLGK---WEEQLLSSEKI 46
           +A + +  G+ ++PL                       K P +        ++  +    
Sbjct: 10  EAVRYLKRGWTIVPLCWPTDGGCGAGHPTCSADPRHIGKAPIKGSTLFRPGQEAEAERFW 69

Query: 47  DKLPACGFGFVCGVGEQPLYAFDIDSKDEKT--ANTFKDTFEILHGTPIVRIGQKPKILI 104
            + P    G      E  L   DID  D          D +E       V  G+     I
Sbjct: 70  SEYPKANIGIRL--EESGLIVVDIDDPDAVPPEDRQRFDLYED-----YVSTGR--GKHI 120

Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
            FR N   I K       +   +I   G Y VA     ++ KEY W+           P 
Sbjct: 121 YFRRNDLPIPKAAIDLRKERGWEIRLRG-YVVAPPSRHRSGKEYRWSRGIEVVH----PE 175

Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
           + +   E +    ++    +  D   +       +        RE+  F +  G      
Sbjct: 176 VPDWIAEIIRAASEQKVQDVNIDWDHLPD--VDISRIPLSIETRELIRFGAPKGAR---- 229

Query: 225 SHDEWIPVVMAVHHETRGS-------SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
           S   W  +   +      +       +    I+ +  ++      +   Y+      E  
Sbjct: 230 SEAIWRVIGDLIRAGCDDATVAAVLMNPEHLISEKIREKAPEQQHKYVEYQIAKMRSEFR 289

Query: 278 GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337
              +K              +         F+D  N          +  Y  + + W   D
Sbjct: 290 SPASKG----AEWTNMDQSVASAQPAMEHFTDLGNAKRLVRRHGKNLRYCPELEKWLVYD 345

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
                +               +   KE V  + +E        K  +          N E
Sbjct: 346 GRRWVV---------DKTGEVMRRAKETVQSMYQEAAQIADEDKRKKLVQWAL----NSE 392

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
             SK K   +  +      +    LD     L   +G +DL +G+     ++  ITK   
Sbjct: 393 SASKLKHMVELAQTEPGIPVKPSQLDRDPWLLNCLNGTIDLRSGELRPHRRDDLITKLVP 452

Query: 458 TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
             +     +  +   +      ++ ++++  R VG  L G    Q    + G G +GKST
Sbjct: 453 VEYDPDAKAPLWEKFLHRIMNGNQRLIEFLQRAVGYTLTGDTSEQVLFLLYGTGANGKST 512

Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
            + +++  FG+       ++ + ++      +    L RL+G R V  +E  E    +  
Sbjct: 513 FLEVLRSLFGDYGQQAEFSTFLARD----TERVRNDLARLVGKRFVSAAEAEEGRRWSEV 568

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
            IKQ+TGGD +TAR  Y   Y E   +   ++  N    VR  D A WRR  +IPF   I
Sbjct: 569 VIKQLTGGDTITARFLYRE-YFEFRPAMKLWLAANHKPRVRGTDYAIWRRLRLIPFTVTI 627

Query: 637 A--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
               RD   + KL          W ++G   ++ +GLD   P   ++A  + R+  D   
Sbjct: 628 PEGERDRDLSSKLCQ-ELQGILAWAVQGCLKWLDRGLD--APPEVMEATNQYREEQDVIA 684

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
            +I+  C    N    +  L K+Y ++ E       + +S       L +KGF
Sbjct: 685 QFIEAACVPHPNTRVNATDLYKAYLKWCEDVGE---RPVSLTEFGERLNEKGF 734


>gi|52081928|ref|YP_080719.1| phage-like protein [Bacillus licheniformis ATCC 14580]
 gi|52787314|ref|YP_093143.1| hypothetical protein BLi03629 [Bacillus licheniformis ATCC 14580]
 gi|52005139|gb|AAU25081.1| hypothetical phagelike protein [Bacillus licheniformis ATCC 14580]
 gi|52349816|gb|AAU42450.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 805

 Score =  427 bits (1097), Expect = e-117,   Method: Composition-based stats.
 Identities = 140/805 (17%), Positives = 275/805 (34%), Gaps = 88/805 (10%)

Query: 5   QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           QW     +        +P  +     +      W       +  +     G GF+    +
Sbjct: 16  QWILWRSEERDGKKTKVPYQIDGSMAQSSNKRTWSTFPTVLKFYNDRDYDGIGFMF-SKD 74

Query: 63  QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
            P    DID   +D   +   ++  + +          K  + I  +            +
Sbjct: 75  DPFIGIDIDHCVEDGVLSPFAEEIVQAISSYTEYSPSGKG-VHIITKGKIPLRGPGTGRK 133

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           + +  L++   G+YF                   +   +      ++E  E   K+ ++ 
Sbjct: 134 NPELGLEVYRHGRYFTFTG---------------NSLGIGAVEERTDELKELFEKYLKDK 178

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238
                  K     S+  +N +N++   R   +      ++ +NG    D+     MA+ +
Sbjct: 179 KEESKPSKLPAASSRDMSNLSNKEIWERMFNSKNGKSIQDLFNGHLINDDHSATDMALCN 238

Query: 239 ---------------ETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
                            R S   +E   R  S  G+TY E        +          +
Sbjct: 239 HLAFWTDKDPAKMDSMFRESGLFREKWDRQHSSDGATYGEMTIAAAVYSTHTTISDLLEE 298

Query: 283 KRSTFTSLFYHH--------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334
           ++     ++  H         + I     A   ++  N      Y   +  Y        
Sbjct: 299 QQEQPYEIYISHPENSQVEDTEEIIDTPPAFHLTELGNAERIVYYHGKNIRYC------- 351

Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
             ++ +  IW+    +   S         + +  L  E +      +  +     D+ ++
Sbjct: 352 --NELDWLIWNGKRWEE-DSKRKIEAITAKTLRALYGEAKATEDKFRKKQL---NDWAKK 405

Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
               N +  +    L+   + S+    LDS        +G++DL+TG+ +   ++L  TK
Sbjct: 406 CERRNIRMNTI---LDVRPMVSVRKQELDSHKYLFNCDNGVIDLKTGELLPHDRDLLFTK 462

Query: 455 STGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRG 508
            +   +        +   +   F  +      E++D+  + +G +L G    Q    + G
Sbjct: 463 ISPISYQTDADCPNWKTFLESIFIDDQGTPNYEIIDFMQKAIGYSLTGDTTEQVMFFLFG 522

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            G +GKST +N +++ FG+        + I +         N  + RL G+R V   E+ 
Sbjct: 523 NGRNGKSTFINTVQHLFGDYGRQTNSDTFIKKK---NDSAINNDIARLDGARFVSAVESE 579

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           E  +++ + +KQ+TGG+ M+AR      Y E    F  F   N    V+  D+  WRR  
Sbjct: 580 EGQQLSESLVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIR 638

Query: 629 VIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
           +IPF   I     D    QKL         +W ++G   +  +GL    PE   KA +  
Sbjct: 639 LIPFTVTIPKEKVDKKLPQKL-AAEMPGILRWAVEGCLKWQKEGLG--EPEAIKKATDGY 695

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R+  D    ++++ C        E+  L K Y ++  +    +   +  R     L+ +G
Sbjct: 696 REDMDILGPFMEERCIQHPKAKVEAKELYKDYKDWCFENDEIE---LKNRAFYRQLEIRG 752

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKL 771
           F       K  +   +K    G+ L
Sbjct: 753 F-------KKYRGNYNKNYFDGIGL 770


>gi|295002752|gb|ADF59173.1| gp60 [Bacillus phage phi105]
          Length = 806

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 135/822 (16%), Positives = 273/822 (33%), Gaps = 88/822 (10%)

Query: 5   QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           QW     +  +     +P  +     +      W       +  ++    G GF+    +
Sbjct: 16  QWILWRSEERNGKKTKVPYQIDGSLAQSSNKRTWSTFATIMKFFNEQEYDGIGFMF-SKD 74

Query: 63  QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
            P    DID    D   +   ++  + +          +  + I  +            +
Sbjct: 75  DPFIGIDIDHCVNDGVLSPFAQEIIQTISSYTEYSPSGEG-VHIIAKGKLPLRGPGTGRK 133

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           +    L++   G+YF            +                    +++ +F  +   
Sbjct: 134 NIDKGLEVYRHGRYFTFTGSSLDVGPVHE----------------RSAEIKTIFDKYLTE 177

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238
                       P    +N +N++   R   +      ++ +NG    D+     MA+ +
Sbjct: 178 KDEARPVSTRSQPESDMSNLSNKEIWERMFNSKNGKSIQDLFNGQLVNDDHSSTDMALCN 237

Query: 239 ---------------ETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
                            R S+  +E   R  S  G+TY E        +          +
Sbjct: 238 HLAFWTDKDASKMDSMFRESNLFREKWDRQHSADGATYGEMTIAAAIYSTGPTISDLMEQ 297

Query: 283 KRSTFTSLF-------YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK 335
           +   +   F           + I         ++  N      Y   +  Y         
Sbjct: 298 QEKPYEVYFSQPPTAQVEDTEEIIDTPPTFHLTELGNAERIVYYHGKNIRYC-------- 349

Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
            ++    IW+  + +   S         + +  +  E +      +  +     D+ ++ 
Sbjct: 350 -NELEWLIWNGKMWQE-DSKRKIEAITAQTLRAIYGEAQATEDGYRKKQL---NDWAKKC 404

Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
              N +  +    L+A  + S+    LDS       ++G++DL+TG  +   ++L  TK 
Sbjct: 405 ERRNIRMNTI---LDARPMVSVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLLFTKI 461

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
           +   + +      +   +   F  E      E++++  + +G +L G    Q    + G 
Sbjct: 462 SPVAYEKDADCPNWKAFMESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFFLFGN 521

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST +N ++   G+        + I +         N  + RL G+R V   E+ E
Sbjct: 522 GRNGKSTFINTVQQLLGDYGRQTNSDTFIKKK---NDSSINNDIARLDGARFVSAVESEE 578

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
             +++ + +KQ+TGG+ M+AR      Y E    F  F   N    V+  D+  WRR  +
Sbjct: 579 GQQLSESLVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRL 637

Query: 630 IPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           +PF   I     D    QKL         +W ++G   +  +GL    PE   KA E  R
Sbjct: 638 VPFTVTIPKEKVDKQLPQKL-AAEMPGILRWAVEGCLMWQKEGL--TEPEDIRKATEGYR 694

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +  D    ++++ C +      E+  L K Y ++  +    +   +  R     L+ +GF
Sbjct: 695 EDMDILGPYMEERCILHPTTKVEAKELYKDYKDWCFENDEIE---LKNRAFYRQLEIRGF 751

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
                  K  +   +K    G+ L      +    N+    +
Sbjct: 752 -------KKYRGNYNKNYFDGIGLIKENRDLYKQLNLFKHDQ 786


>gi|9633023|ref|NP_050131.1| putative DNA-polymerase or DNA-primase [Lactobacillus phage phiadh]
 gi|5730280|emb|CAB52501.1| putative DNA-polymerase or DNA-primase [Lactobacillus phage phiadh]
          Length = 771

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 139/790 (17%), Positives = 283/790 (35%), Gaps = 78/790 (9%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK-LPACGFGFVCGVGEQPL 65
           K    +  ++   + P      +      W +   +   +DK   A G  F         
Sbjct: 25  KYVPARKKNSKIPINPYDGSAGKSNDPSTWSDFNTALRALDKIERADGLAFYFA---NGY 81

Query: 66  YAFDIDSKDEKTAN-------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118
              D+D+      +       T  +TF  L     + + Q  K +           K   
Sbjct: 82  VGLDVDNIGNDLQDFLVGAPETLVETFRKLTKKTYMEVSQSGKGIH-----AVFKGKIPG 136

Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
               +G+ ++   G++F                   +         L   D+++L++F  
Sbjct: 137 KHRRKGNYEMYEAGRFFALTG---------------NTIGSSQIQSLDNSDMKHLYEFLF 181

Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP----VVM 234
                +        P    + +   +  NR +++      + F +G  +++        +
Sbjct: 182 GKDKVIDISNYQDKPINDLSIS---EIINRMLSSSRGQRDKLFMSGGWEKFYTSQSEADL 238

Query: 235 AVHH-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTS 289
           A  +       +   K   I R  S   + +DE+     +      +  +      +   
Sbjct: 239 AFANDLAFWTGKNFQKMDTIFRNSSLMRAKWDEKRGATTYGIATLNKANNDTVNTFSTKD 298

Query: 290 -----LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344
                ++  + +   K      + D      F        +Y+   + WY  + +     
Sbjct: 299 DEALNVYGFNQESSQKETPPRSWDDMGMAQRFLDMFPHSIIYSMVDETWYVYNGSYWKQD 358

Query: 345 S-LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
           +   ++K    ++N L + K  + +  +E           + W   + R ++        
Sbjct: 359 NQGLIEKAADKVINNLKNEKHVIPEDVDE-------DDYKKAWKKFEKRERSRSSKVNMV 411

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           +     E   +  +  +  D     L    G +DL  G           T+ TG  F E 
Sbjct: 412 N-----EIKHLVPVLHNQWDQEHMLLNTPSGYIDLTNGTLHNHKYNKMFTQETGVDFSEN 466

Query: 464 EPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
                ++  ++  F   +E++ +  + +G +L G N  Q+   + G G +GKS L+N++K
Sbjct: 467 VDCPLWIKFLNQTFQNDQELIHFVQKIIGYSLTGSNAEQKMFILYGNGRNGKSVLLNIVK 526

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
           Y FG+       A+ IMQ R   +  A   + RL G+R+V+ SE NE D ++ + +KQMT
Sbjct: 527 YIFGSYAKT-MNATTIMQKRIGSSQGATSDIARLEGARLVVSSEANEGDRLDESLVKQMT 585

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
           GGD + AR  YG  + E    F  F+  N    +   D+  WRR ++IPF   +   +  
Sbjct: 586 GGDTLVARYQYGKDF-EFDPVFKLFMATNHKPKIYGTDEGIWRRLVIIPFTHTVKKENVD 644

Query: 643 FA-QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
              +      ++   KW ++G   + S+GL+   P+V   A  E R+  D  +A+ID+CC
Sbjct: 645 KKLEDKLKAESMGILKWAIEGAMMWQSEGLNP--PDVIQNAGNEYRKEMDVIEAFIDECC 702

Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
              ++   +  +   +Y  +  +  N++   ++       + ++            K   
Sbjct: 703 VTNDSYKVKLPTYLDAYKNWANETNNWE--GMNNTKFGKEITKR---------FERKRLN 751

Query: 762 SKRIIKGLKL 771
           +     G+ L
Sbjct: 752 TGNYYLGIDL 761


>gi|22855035|ref|NP_690795.1| hypothetical protein phi105_42 [Bacillus phage phi105]
 gi|4126648|dbj|BAA36668.1| unnamed protein product [Bacteriophage phi-105]
          Length = 806

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 135/822 (16%), Positives = 273/822 (33%), Gaps = 88/822 (10%)

Query: 5   QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           QW     +  +     +P  +     +      W       +  ++    G GF+    +
Sbjct: 16  QWILWRSEERNGKKTKVPYQIDGSLAQSSNKRTWSTFATIMKFFNEQEYDGIGFMF-SKD 74

Query: 63  QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
            P    DID    D   +   ++  + +          +  + I  +            +
Sbjct: 75  DPFIGIDIDHCVNDGVLSPFAQEIIQTISSYTEYSPSGEG-VHIIAKGKLPLRGPGTGRK 133

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           +    L++   G+YF            +                    +++ +F  +   
Sbjct: 134 NIDKGLEVYRHGRYFTFTGSSLDVGPVHE----------------RSAEIKTIFDKYLTE 177

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238
                       P    +N +N++   R   +      ++ +NG    D+     MA+ +
Sbjct: 178 KDEARPVSTRSQPESDMSNLSNKEIWERMFNSKNGKSIQDLFNGQLVNDDHSSTDMALCN 237

Query: 239 ---------------ETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
                            R S+  +E   R  S  G+TY E        +          +
Sbjct: 238 HLAFWTDKDASKMDSMFRESNLFREKWDRQHSADGATYGEMTIAAAIYSTGPTISDLMEQ 297

Query: 283 KRSTFTSLF-------YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK 335
           +   +   F           + I         ++  N      Y   +  Y         
Sbjct: 298 QEKPYEVYFSQPPTAQVEDTEEIIDTPPTFHLTELGNAERIVYYHGKNIRYC-------- 349

Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
            ++    IW+  + +   S         + +  +  E +      +  +     D+ ++ 
Sbjct: 350 -NELEWLIWNGKMWQE-DSKRKIEAITAQTLRAIYGEAQATEDGYREKQL---NDWAKKC 404

Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
              N +  +    L+A  + S+    LDS       ++G++DL+TG  +   ++L  TK 
Sbjct: 405 ERRNIRMNTI---LDARPMVSVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLLFTKI 461

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
           +   + +      +   +   F  E      E++++  + +G +L G    Q    + G 
Sbjct: 462 SPVAYEKDADCPNWKAFMESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFFLFGN 521

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST +N ++   G+        + I +         N  + RL G+R V   E+ E
Sbjct: 522 GRNGKSTFINTVQQLLGDYGRQTNSDTFIKKK---NDSSINNDIARLDGARFVSAVESEE 578

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
             +++ + +KQ+TGG+ M+AR      Y E    F  F   N    V+  D+  WRR  +
Sbjct: 579 GQQLSESLVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRL 637

Query: 630 IPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           +PF   I     D    QKL         +W ++G   +  +GL    PE   KA E  R
Sbjct: 638 VPFTVTIPKEKVDKQLPQKL-AAEMPGILRWAVEGCLMWQKEGL--TEPEDIRKATEGYR 694

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +  D    ++++ C +      E+  L K Y ++  +    +   +  R     L+ +GF
Sbjct: 695 EDMDILGPYMEERCILHPTTKVEAKELYKDYKDWCFENDEIE---LKNRAFYRQLEIRGF 751

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
                  K  +   +K    G+ L      +    N+    +
Sbjct: 752 -------KKYRGNYNKNYFDGIGLIKENRDLYKQLNLFKHDQ 786


>gi|291484307|dbj|BAI85382.1| hypothetical protein BSNT_02817 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 805

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 131/797 (16%), Positives = 265/797 (33%), Gaps = 72/797 (9%)

Query: 5   QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           QW     +  +     +P  +     +      W       +  ++    G GF+    +
Sbjct: 16  QWILWRSEERNGKKTKVPYQIDGSMAQSSNKRTWSTFATIMKFFNEQEYDGIGFMF-SKD 74

Query: 63  QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
            P    DID    D   +   ++  + +          +  + I  +            +
Sbjct: 75  DPFIGIDIDHCVNDGVLSPFAQEIIQTISSYTEYSPSGEG-VHIIAKGKLPLRGPGTGRK 133

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           +    L++   G+YF                  P + + E+   + ++ +    +     
Sbjct: 134 NIDKGLEVYRHGRYFTFTGNSLDVG--------PVQERSEEIKTIFDKYLTEKEEAKPVS 185

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD--------EWIPV 232
           T        S + +K            + I    +       + S D         W   
Sbjct: 186 TRTQSASDISNLSNKEIWERMFNSKNGKSIQELFNGQLINGDHSSTDMALCNHLAFWTDK 245

Query: 233 VMA-VHHETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
             + +    R S   +E   +  S  G+TY E        +          ++   +   
Sbjct: 246 DASKMDSMFRESGLFREKWDQQHSADGATYGEMTIAAAIYSTGPTISDLMEQQEQPYEVY 305

Query: 291 FYHHGKL-------IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
           F             I         ++  N      Y   +  Y          ++ +  I
Sbjct: 306 FSQPQASHVADTEEIIDTPPVFHLTELGNAERLVYYHGKNIRYC---------NELDWLI 356

Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
           W+  + +   S         + +  +  E +      +  +     D+ ++    N +  
Sbjct: 357 WNGKMWEE-DSKRQIEALTAQTLRAIYGEAKATEDGYRKKQL---NDWAKKCERRNIRMN 412

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           +    L+   + ++    LDS       ++G++DL+TG+ +   ++   TK +   + + 
Sbjct: 413 TI---LDTRPMVAVRKQDLDSHKYLFNCENGVIDLKTGELLPHDRDFLFTKISSVAYQKD 469

Query: 464 EPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
                +   +   F  E      E++++  + +G +L G    Q    + G G +GKST 
Sbjct: 470 ADCPNWKAFLESIFIDEQGQPNYEIINFMQKAIGYSLTGDTTEQVMFFLFGNGRNGKSTF 529

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
           +N ++   G+        + I +         N  + RL G+R V   E+ E  +++ + 
Sbjct: 530 INTVQQLLGDYGRQTNSDTFIKKK---NDSSINNDIARLDGARFVSAVESEEGQQLSESL 586

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           +KQ+TGG+ M+AR      Y E    F  F   N    V+  D+  WRR  ++PF   I 
Sbjct: 587 VKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLVPFTVTIP 645

Query: 638 NR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
               D    QKL         +W ++G   +  +GL    PEV  KA E  R+  D    
Sbjct: 646 KEKVDKKLPQKL-AAEMPGILRWAVEGCLKWQKEGLK--EPEVIRKATEGYREDMDILGP 702

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           ++ + C +  +   E+  L K Y  +  +    +   +  R     ++ +GF       K
Sbjct: 703 YMSERCVVHPSAKIEAKELYKDYKNWCYENDEIE---LKNRAFYRQIEIRGF-------K 752

Query: 756 IEKEWKSKRIIKGLKLK 772
            E   K+K    G+ L 
Sbjct: 753 KENGAKNKVFFYGIGLN 769


>gi|262047920|ref|ZP_06020865.1| phage primase [Lactobacillus crispatus MV-3A-US]
 gi|260571773|gb|EEX28349.1| phage primase [Lactobacillus crispatus MV-3A-US]
          Length = 776

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 146/786 (18%), Positives = 270/786 (34%), Gaps = 77/786 (9%)

Query: 15  HNGFKLIPLRL---GDKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDI 70
              +  IP      G  +      W +   +   + K P A G  F            D+
Sbjct: 31  REKYTKIPKNPYNFGAGKSNDQRTWSDFETALRALKKYPQADGLAFYFA---NGFVGLDV 87

Query: 71  DSKDEKTAN---------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
           D  D   A+            + F+ L     + I Q  K L           K      
Sbjct: 88  DHIDSDLADYEEGDTDPNNLVNHFKSLTHNSYMEISQSGKGLHVI-----FKGKIPGKYR 142

Query: 122 TQGHLDILGCGQYFVAYNIHPKT-----------KKEYTWTTPPHRFKVEDTPLLSEEDV 170
             G+ ++   G++F                       Y +     +      P + + D 
Sbjct: 143 RHGNYEMYESGRFFALTGNTIGKPVIKSLDESEMTTLYEFCFGKDKVTPLH-PEIDDND- 200

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
           E +     EI     +  KS      +      Q+ N +  A ++   +  +    D   
Sbjct: 201 ETIDLSVTEIIKRAEESPKSGKRFTLFMQGGWEQFYNTQSEADMAFANDLAFWCGRDI-- 258

Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
                +    R SS  ++   R     +TY +       +  +   + + + + +     
Sbjct: 259 ---HKMDQIFRNSSLIRDKWDR-QDGATTYGQRTLQKAIN--ETPNVYNPSSENTGNYIF 312

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
            ++  K  PK            +     Y K            Y       YI++ +   
Sbjct: 313 SFNEKKQKPKHYTQDDMG--MAQRFIDKYGKNFL---------YSYVDKEWYIYNGSYWS 361

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNS-KSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
                     +    + DL+++    + +  +  +     ++ +    E S       + 
Sbjct: 362 PDTKGY-IETAADHVIKDLAKDGPVIDPSLPEKDQDRIIKNWNKFVNHERSHKAKVDLTK 420

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
           E      +T  + +     L    G +DL  G+          T  TG+ + +   S  +
Sbjct: 421 ELQHRLPVTHSMWNQEDMLLNTPSGYVDLTNGKLHPHDISKMFTAETGSEYSDTIDSPNW 480

Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
              +   F   EEV+ Y  + +G +  G  K Q      G G +GKS L++ I+   G  
Sbjct: 481 RKFLKQIFQNDEEVIHYVQKAIGYSFTGSTKEQVMFIPYGNGRNGKSVLLDTIQDVAGGY 540

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                 +S + +     +  AN  + RL GSR+VI SE NE   ++   +KQ+TGGD + 
Sbjct: 541 AKTMNVSSIMTK---YNSNGANSDIARLEGSRMVISSEANEGQRLDEGLVKQLTGGDRIV 597

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQK 646
           AR  YG  + E   S+  ++  N    +R  D+  WRR I+IPF+  +     D +   K
Sbjct: 598 ARQQYGKEF-EYQPSYKIWMATNHKPLIRGTDEGIWRRLILIPFEYQVPKDKIDRNLKYK 656

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           LE   ++    W ++G   +  +GL   IPE    A ++ R+  D    +++DCC+IG  
Sbjct: 657 LE-SESMGILNWIVEGAIMWQVEGLQ--IPERIKNASQKYREEMDVLSGFVNDCCEIGPG 713

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
              +S  L  SY  + E    Y    ++       + +K           +K+     + 
Sbjct: 714 FTAKSGELYDSYKNWAEDANEYK---MTLTRFGKEMTKK---------FHKKKSMGVMVY 761

Query: 767 KGLKLK 772
           +G+++K
Sbjct: 762 EGIRIK 767


>gi|153955845|ref|YP_001396610.1| hypothetical protein CKL_3236 [Clostridium kluyveri DSM 555]
 gi|219856206|ref|YP_002473328.1| hypothetical protein CKR_2863 [Clostridium kluyveri NBRC 12016]
 gi|146348703|gb|EDK35239.1| Phage-related protein [Clostridium kluyveri DSM 555]
 gi|219569930|dbj|BAH07914.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 769

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 124/796 (15%), Positives = 249/796 (31%), Gaps = 72/796 (9%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPL 65
           WK + +          P+     +P + G +++   +   I      G GF+ G     +
Sbjct: 14  WKYEERSGRKTKVPYNPVTRKRAKPNQRGTFKDFSSAVAAISDY--DGIGFLVG---NDI 68

Query: 66  YAFDIDS---KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK-KKTTES 121
              D+D       K     +   E   G  +        + I F+       K K    +
Sbjct: 69  CVIDLDDCFDSSGKLKPIAQSVVEAFSGCYMEHSPSGKGLHIFFKATGYDFDKTKYYINN 128

Query: 122 TQGHLDIL---GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
            +  +++       ++                          D P  S E    L K+  
Sbjct: 129 RKLGVEVYVAGATNRFVTVTGNVYANG---------------DIPEKSNELQMILDKYML 173

Query: 179 EITV---PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235
             T     +  + +S +  K+      +        A        + + S  +     M 
Sbjct: 174 RPTPVKQLVDIESQSYLSDKSVIEKAFKSVNGERFKALWQGDTSGYASASEADLALCGML 233

Query: 236 ----------VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD--FEEIGDTAKK 283
                     +    R S   ++   R  + GSTY          +    ++  G  +  
Sbjct: 234 AFWCGRDIGQMDRLFRKSGLMRDKWNR-PQSGSTYGMITIQKAIASVTEVYKPGGKRSSA 292

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
              F    Y    L  +      ++D     +F+ Y K    Y  + K W+  +      
Sbjct: 293 TEDFLQGEYSLANLKTENNERYPWTDIGASRLFADYYKSFARYVPERKMWFCYENG---- 348

Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
               +       +  +   K     L           +   +       +      +  K
Sbjct: 349 ----IWTPDIGNLKVMEMCKSLANQLLTYALTIQDEHQRKAYIDYCRKWQSRRYRETVLK 404

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
                 +A S++ I+    D   + L   +G L L +        E  +TK +G  +   
Sbjct: 405 ------DAQSVYPISMAEFDQDPQVLNCANGTLFLTSMDFHPHNSEDRLTKISGVKYDPE 458

Query: 464 EPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLI 521
             S+ +   +       EE   +  +  G ++ G  + +    + G    +GK TL   I
Sbjct: 459 AKSERWDRFIYEIMSGDEEKAKFLQKAFGYSISGDTRYECLFVLYGATTRNGKGTLCESI 518

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
               G+        + I   +   +   +  + RL G R V ISE +    +NAA++K M
Sbjct: 519 LKVLGSYGCTARPET-ISLKKNNNSSSPSEDIARLAGVRFVNISEPSRGLVLNAAQVKSM 577

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANR 639
           TGGD + AR  + N++ +    F  +I  N    + +       R ++IPF++    + +
Sbjct: 578 TGGDTINARFLHENSF-DFSPKFKLYINTNYLPVITDMTLFSSGRVVIIPFERHFDESEQ 636

Query: 640 DASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
           D +  ++            W ++G +    +GL   +P+    A E  ++ +D    + +
Sbjct: 637 DKNLKREFAKPKNQSAILNWLIEGYQLLKKEGL--TLPDSVKTATEAYKRDSDKIALFFE 694

Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
           D  +   N    +  +   Y  +      Y       R     L     I  ++R++   
Sbjct: 695 DALEESPNSEVRTSEVYARYQRWCSANGCYSENA---RNFKQALTA---IARVERKRPRS 748

Query: 759 EWKSKRIIKGLKLKPA 774
                 ++ G KL   
Sbjct: 749 GGGMTTMLIGYKLTEE 764


>gi|229008912|ref|ZP_04166266.1| hypothetical protein bmyco0002_56420 [Bacillus mycoides Rock1-4]
 gi|228752349|gb|EEM02023.1| hypothetical protein bmyco0002_56420 [Bacillus mycoides Rock1-4]
          Length = 796

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 152/822 (18%), Positives = 285/822 (34%), Gaps = 93/822 (11%)

Query: 6   WKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           W     +  +     +P  +     +      W       +  ++    G GF+    + 
Sbjct: 18  WILWRSEVRNGKKTKVPYQINGEMAQSNNKRSWSTFPTIIKFYEQGGYDGIGFMF-SKDD 76

Query: 64  PLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
           P    DID   ++    +  +D  E ++            I I  +            ++
Sbjct: 77  PFVGIDIDHCMQEGALTSLAEDIIETVNSYTEY-SPSGDGIHIIAKGKLPLKGPGTGRKN 135

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
           T+  L++   G+YF                    +  VED    +EE      K+ +E  
Sbjct: 136 TEIGLEVYRHGRYFTFTG------------DCLDQVPVED---RTEELKVLFDKYLKEKP 180

Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY-----NGSHDE-------- 228
            P  K   +    +  T+ +N +   R   +      ++ +     NG H          
Sbjct: 181 KPERKQSNTSFEREDITSLSNAELWERMFDSKSGGAIKDLFQGILINGDHSSTDMALCNH 240

Query: 229 ---WIPVVMA-VHHETRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
              W     A +    R SS  +E   +  S  G TY +   +    +           +
Sbjct: 241 LAFWTDKDAAKMDSMFRESSLLREKWDKPHSSDGRTYGQMTIDTAILSTPSTIEDYEPPE 300

Query: 284 RSTFTSLFY------HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337
              +              + I   +     ++  N    + Y   +  Y          +
Sbjct: 301 EKKYEIYISDDSSVIEDTEEIIDEVPKFHLTELGNAERIAYYHGENIRYC---------N 351

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN--SKSPRFWFNTDYRRQN 395
           +    IW+        S         + +  L  E +       +K    W     RR  
Sbjct: 352 ELEWLIWNGKHWHE-DSKRQIEAITAKTLRALYGEAKATEDKYQAKLLHDWAKKCERRS- 409

Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
                        L+   + S+    LDS S      +G++DL+TG+ +   ++L +TK 
Sbjct: 410 -------IRINSILDVRPMVSVKKKELDSHSFLFNCDNGVIDLKTGELLPHDRDLLLTKL 462

Query: 456 TGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
           +   + +      +   +   F+        E++ Y  + +G +L G  K Q    + G 
Sbjct: 463 SPIKYDKNAECPNWKAFLKSIFKTPAGEADHELIHYLQKAIGYSLTGVTKEQVMFFLFGN 522

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST +N+I+   G+        + +   +       N  + RL G+R V   E+ E
Sbjct: 523 GRNGKSTFINIIQDLLGDYGRQTNSDTFL---KKRNDSGINNDVARLDGARFVSAVESEE 579

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
             +++ A +KQ+TGG+ M+AR      Y E    F  F   N    V+  D+  WRR ++
Sbjct: 580 GQQLSEALVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIML 638

Query: 630 IPFDKPIANRDASFA-QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           IPF   I   +  +       K      +W ++G   + ++GL    PE    A  E R+
Sbjct: 639 IPFTVTIKKENIDYDLPDKLAKEMPGILRWAVEGCMKWQAEGLR--APEAVKAATAEYRE 696

Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
             D    +ID+ C +  ++  E+ SL ++Y+++  Q    +   +  R     L+ +GF 
Sbjct: 697 DMDILAPFIDENCTVNSSVRIEAKSLYENYTKWCYQNNELE---LKNRAFYRQLEVRGF- 752

Query: 749 GGIKREKIEKEWKSKRIIKGLKLK-----PAFESVDDNSNII 785
                 K EK   +K  I G+ L        F + D++ N +
Sbjct: 753 ------KKEKGTGNKNFILGITLNKLAGSNLFSTKDEDKNNV 788


>gi|184154942|ref|YP_001843282.1| phage primase [Lactobacillus fermentum IFO 3956]
 gi|183226286|dbj|BAG26802.1| phage primase [Lactobacillus fermentum IFO 3956]
 gi|299782971|gb|ADJ40969.1| Phage primase [Lactobacillus fermentum CECT 5716]
          Length = 769

 Score =  416 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 148/800 (18%), Positives = 261/800 (32%), Gaps = 91/800 (11%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKRP---QRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVG 61
           WKE+        +  IP+      P        W +   +   +D+ P A G  F     
Sbjct: 22  WKEE-----RGKYTKIPVNPWTGGPGKSNDSSTWADFDTAMRALDQYPDADGLAFYFA-- 74

Query: 62  EQPLYAFDIDSKDEKTA---------NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG 112
                  DID   E            +        L     + +    + +         
Sbjct: 75  -NGYVGLDIDHIAEDLERVQCGDTDPDNLVTKAHELTHGSYMEVSMSGEGIHCI-----F 128

Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
             K       +G+ ++   G++F                         +   L +  +  
Sbjct: 129 KGKIPGDRRRKGNYEMYQSGRFFALTG--------------NTLNATPEIKSLDDTAMRR 174

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI-- 230
           L+  +          KK   P+ T    +  +  NR   +        F  G  + +   
Sbjct: 175 LYDHYLHSDKVAEFPKKQ--PAITENTLSIDEIINRAERSTNGARFRAFMKGGWEPFYPS 232

Query: 231 --PVVMAVHHE-----TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
                MA  ++      R       I R+ S     YDE++    +      +  +    
Sbjct: 233 QSEADMAFANDLAFWCGRDFKAMDSIFRQSSLYRKKYDEKHGKTTYGIALLNKAINETSN 292

Query: 284 ------RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337
                             K   K      + D  N   F      +F Y+   K WY   
Sbjct: 293 VFHPHQPLNVNYDMSFLNKDRDKPKTPRTWDDMGNALRFIDMYGDNFKYSYIDKMWYLY- 351

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
                  + +  +I  S M         + ++  E  +                 +    
Sbjct: 352 -------NGSYWQIDQSGM-VEKCADSVIKNMDNEKLNIWPGMDESDATEKWVKFKAKCR 403

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
            N   KS     E      +     D+    L  + G +DL +G   +  ++   +  T 
Sbjct: 404 SNRSKKSMLD--EVKHHVPVLHSEFDNDLMLLNTESGYVDLNSGLLKEHDRDKMFSHQTA 461

Query: 458 TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
             + +   + E+   +   F   EEV+ Y  + VG +  G  K Q  + + G G +GKS 
Sbjct: 462 AEYTDTIDAPEWDKFLHQIFNNDEEVIHYIQKAVGYSATGSIKEQVMLLLYGNGRNGKSV 521

Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
            +N I    G+        S ++++    +   N  + RL G+R+VI SE NE   ++  
Sbjct: 522 FINTIADILGSYAETMNVESIMVKH----SSGVNSDIARLEGARLVISSEANEGSRLDEG 577

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
            +KQMTGGD M AR  Y + + E    F  ++  N    +R  DD  WRR ++IPF   I
Sbjct: 578 LVKQMTGGDKMVARHLYASEF-EFTPQFKLWMATNHKPIIRGTDDGIWRRIMLIPFLVQI 636

Query: 637 ANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
                D     KL+         W ++G   + ++GL+   PE+  KA +E RQ  D  +
Sbjct: 637 PKDKVDKELKYKLQR-EASGILNWIVQGAMMWQAEGLEP--PEIIKKASDEYRQEMDAIE 693

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            +I + C+ G+     +  L   Y  + ++   +               ++ F   +K +
Sbjct: 694 FFISEKCERGDGYMAPAGELYDVYKRWSDESGEH------------QFNKQKFGSEMKAK 741

Query: 755 KIEKEWKSKRIIKGLKLKPA 774
              K  K  R  +GLK+   
Sbjct: 742 FNYKHTKHGRYYEGLKIITD 761


>gi|196037390|ref|ZP_03104701.1| gp60 [Bacillus cereus NVH0597-99]
 gi|196031632|gb|EDX70228.1| gp60 [Bacillus cereus NVH0597-99]
          Length = 795

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 145/805 (18%), Positives = 273/805 (33%), Gaps = 90/805 (11%)

Query: 6   WKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           W     +  +     +P  +     +      W       +  ++    G GF+    + 
Sbjct: 18  WILWRSEVRNGKKTKVPYQINGEMAQSNNKRSWSTFPTIMKFYEQGDYDGIGFMF-SKDD 76

Query: 64  PLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
           P    DID   ++    +  +D  E ++            I I  +            ++
Sbjct: 77  PFIGIDIDHCIQEGALTSLAEDVIETVNSYTEY-SPSGDGIHIIAKGKLPLKGPGTGRKN 135

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
               L++   G+YF                    +  VED      ++++ LF+ + +  
Sbjct: 136 VDLGLEVYRHGRYFTFTG------------DCLDQVPVED----RTDELKVLFEKYLKEK 179

Query: 182 VPLVKDKKSIIPSKTWTNNNNRQY------TNREITAFLSCFGEEFYNGSHDE------- 228
               K + +    +    + +          ++   +    F     NG H         
Sbjct: 180 PKPEKKQSTTSFEREDITSLSNAELWERMFDSKSGASIKDLFQGMLINGDHSSTDMALCN 239

Query: 229 ----WIPVVMA-VHHETRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
               W     A +    R SS  +E   +  S  G TY +   +    +           
Sbjct: 240 HLAFWTDKDAAKMDSMFRESSLLREKWDKPHSSDGRTYGQMTIDTAILSTPSTIADYEPP 299

Query: 283 KRSTFTSLFYHHG----KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338
           +   +      +     + I         ++  N    + Y   +  Y          ++
Sbjct: 300 EEKKYEVYISDNSIEDTEEIIDEAPKFHLTELGNAERIAYYHGENVRYC---------NE 350

Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN--SKSPRFWFNTDYRRQNV 396
               IW+        S         + +  +  E +       SK    W     RR   
Sbjct: 351 LEWLIWNGKHWHE-DSKRQIEAITAKTLRAIYGEAKATEDKYQSKLLHDWAKKCERRS-- 407

Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
                       L+   + S+    LD+ +      +G++DL+TG+ +   ++L +TK +
Sbjct: 408 ------IRINSILDVRPMVSVKKKELDAHNFLFNCDNGVIDLKTGELLPHDRDLLLTKLS 461

Query: 457 GTPFVEGEPSQEFLDLVSGYF------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
              + +      +   +   F         E+++Y  + +G +L G  K Q    + G G
Sbjct: 462 PIKYDKNADCPNWKAFMESIFKTPAGEPDPELINYLQKAIGYSLTGVTKEQVMFFLFGNG 521

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
            +GKST +N+I+   G+        + +   +       N  + RL G+R V   E+ E 
Sbjct: 522 RNGKSTFINIIQDLLGDYGRQTNSDTFL---KKRNDSGINNDVARLDGARFVSAVESEEG 578

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
            +++ A +KQ+TGG+ M+AR      Y E    F  F   N    V+  D+  WRR ++I
Sbjct: 579 QQLSEALVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIMLI 637

Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           PF   I     D     KL  K      +W ++G   + ++GL    PE    A  E R+
Sbjct: 638 PFTVTIPKDKIDYDLPDKL-AKEMPGVLRWAVEGCMKWQAEGLR--APEAVKAATAEYRE 694

Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
             D    +ID+ C +      E+  L ++Y+++  Q    D   +  R     L+ +GF 
Sbjct: 695 DMDILAPFIDENCTVHPTERIEAKLLYENYTKWCYQNNELD---LKNRAFYRQLEIRGF- 750

Query: 749 GGIKREKIEKEWKSKRIIKGLKLKP 773
                 K EK  K+K  I G+ L  
Sbjct: 751 ------KKEKGSKNKTFIMGMTLNS 769


>gi|227534633|ref|ZP_03964682.1| primase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187734|gb|EEI67801.1| primase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 765

 Score =  413 bits (1060), Expect = e-113,   Method: Composition-based stats.
 Identities = 134/786 (17%), Positives = 269/786 (34%), Gaps = 80/786 (10%)

Query: 15  HNGFKLIPLRL--GDKRPQ-RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID 71
            N +  IP     G K       +W     +   +      G GF            D+D
Sbjct: 26  KNKYTKIPYSALTGTKTSSTDSKQWVTFEEAITALQAYDLDGLGFFFA---NGYVGIDVD 82

Query: 72  SKDEKTANTFK---------DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
              +      +         +            +      +I          +   T   
Sbjct: 83  HIGDDLERLEEGQTDDNVAWEFMNTFKSYTERSMSGTGIHIIV-------KGEIPGTRRR 135

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
           + ++++   G++F           ++     P   + +              K+ +  TV
Sbjct: 136 KANVEMYQSGRFFAMTG---DEIGKFHSINSPAEEEFKRI----------YTKYLEPKTV 182

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH---- 238
             +  + +++P+    +    +    +    +       +   +       +A  +    
Sbjct: 183 IDLPSRYNLVPNNLSEDEIIIKMLRSKSGDRIKKLLNGGWEPLYPSQSEADLAFANDLAF 242

Query: 239 -ETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLF 291
              R  ++   I R  S     +DE++    +         +        K       L 
Sbjct: 243 WTGRDFTRMDSIFRHSSLMRPKWDEKHGKTTYGVSTLNRAINDVSDTYQPKHEKPKYKLG 302

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
           +      PK      + D  N   F         Y+   KAWY        I++ +  ++
Sbjct: 303 FITDTGKPKAFPPRSWDDTGNADRFVDRYGDVARYSYIDKAWY--------IYNGSFWEL 354

Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
               +     + E V DL +E      +    +         +    N   ++     E 
Sbjct: 355 DKRGL-LRTMIDEVVADLKKEKPKTPPDVDPEKAEKEWAKFCKTSRGNRAKRAL--EDEI 411

Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
                +T+D  D+    +   +G +DL  G   +   +   +K +   + +     E+  
Sbjct: 412 QHRLPVTTDEFDADQTLMNVDNGYIDLSDGTLHEHDIKKMFSKKSNVEYSDTVECPEWQA 471

Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            ++  F    E++DY  + VG +L G  + Q    + G G +GKS  M+ +K+  G+   
Sbjct: 472 FLNQTFNGDNELIDYIQKAVGYSLTGSVEEQVMFILYGSGRNGKSVFMDTLKHIAGSYSR 531

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
                S ++Q     +G AN  + RL G+R+V  SE NE   ++   IK++TGG+ +TAR
Sbjct: 532 TMQAKSIMVQQ---SSGGANSDIARLKGARLVSASEPNEGVRLDEGLIKELTGGESVTAR 588

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLE 648
             YG+ + E    F  ++  N    +R  DD  WRR ++IPF   +     D     KLE
Sbjct: 589 FLYGSEF-EFKPEFKLWLSTNHKPIIRGTDDGIWRRLMLIPFTHQVPVDQVDKRLTYKLE 647

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
              ++    W + G   +  +GL+   P+    A  E R   D  + +I+DCC+ G    
Sbjct: 648 R-ESIGILNWAVDGALKWQREGLEP--PQSVKDASNEYRTEMDVLELFINDCCEKGPGYQ 704

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
             +  L ++Y ++ ++   Y    +  +     ++          +K +K  +      G
Sbjct: 705 AAAGQLYQTYVDWCDKSGEYK---MRKQKFGAEMQ----------KKFDKHKRGSFFYLG 751

Query: 769 LKLKPA 774
           +++K  
Sbjct: 752 IRIKSD 757


>gi|229016445|ref|ZP_04173387.1| hypothetical protein bcere0030_10200 [Bacillus cereus AH1273]
 gi|228744853|gb|EEL94913.1| hypothetical protein bcere0030_10200 [Bacillus cereus AH1273]
          Length = 795

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 154/828 (18%), Positives = 281/828 (33%), Gaps = 97/828 (11%)

Query: 6   WKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           W     +  +     +P  +     +      W       +  ++    G GF+    + 
Sbjct: 18  WILWRSEVRNGKKTKVPYQINGEMAQSNNKRSWSTFPTIIKFYEQGDYDGIGFMF-SKDD 76

Query: 64  PLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
           P    DID   ++    +  +D  E ++            I I  +            ++
Sbjct: 77  PFIGIDIDHCIQEGALTSIAEDVIETVNSYTEY-SPSGDGIHIIAKGKLPLKGPGTGRKN 135

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
               L++   G+YF                    +  VED      ++++ LF+ + +  
Sbjct: 136 VDIGLEVYRHGRYFTFTG------------DCLDQVPVED----RTDELKVLFEKYLKEK 179

Query: 182 VPLVKDKKSIIPSKTWTNNNNRQY------TNREITAFLSCFGEEFYNGSHDE------- 228
               K + +    +    + +          ++   A    F     NG H         
Sbjct: 180 PKPEKKQSTTSFEREDITSLSNAELWERMFDSKSGAAIKDLFQGMLINGDHSSTDMALCN 239

Query: 229 ----WIPVVMA-VHHETRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
               W     A +    R SS  +E   +  S  G TY E   +    +           
Sbjct: 240 HLAFWTDKDSAKMDSMFRESSLLREKWDKPHSSDGRTYGEMTIDTAILSTPSTIADYEPP 299

Query: 283 KRSTFTSLFYHHG----KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338
           +   +      +     + I         ++  N    + Y   +  Y          ++
Sbjct: 300 EEKKYEVYISDNSIEDTEEIIDEAPKFHLTELGNAERIAYYHGDNVRYC---------NE 350

Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN--SKSPRFWFNTDYRRQNV 396
               IW+        S         + +  +  E +       SK    W     RR   
Sbjct: 351 LEWLIWNGKHWHE-DSKRQIEAITAKTLRAIYGEAKATEDKYQSKLLHDWAKKCERRS-- 407

Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
                       L+   + S+    LDS S      +G++DL+TG+ +   ++L +TK +
Sbjct: 408 ------IRINSILDVKPMVSVRKKELDSHSFLFNCDNGVIDLKTGELLPHDRDLLLTKLS 461

Query: 457 GTPFVEGEPSQEFLDLVSGYF------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
              + +      +   +   F         E+++Y  + +G +L G  K Q    + G G
Sbjct: 462 PIKYDKNAECPNWKSFMESIFKTPAGEPDHELINYLQKAIGYSLTGVTKEQVMFFLFGNG 521

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
            +GKST +N+I+   G+        + +   +       N  + RL G+R V   E+ E 
Sbjct: 522 RNGKSTFINIIQDLLGDYGRQTNSDTFL---KKRNDSGINNDVARLDGARFVSAVESEEG 578

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
            +++ A +KQ+TGG+ M+AR      Y E    F  F   N    V+  D+  WRR ++I
Sbjct: 579 QQLSEALVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIMLI 637

Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           PF   I     D     KL  K      +W ++G   + ++GL    PE    A  E R+
Sbjct: 638 PFTVTIPKDKIDYDLPDKL-AKEMPGVLRWAVEGCMKWQTEGLR--APEAVKAATAEYRE 694

Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
             D    +ID+ C +      E+  L ++Y+++  Q    D   +  R     L+ +GF 
Sbjct: 695 DMDILGPFIDENCAVYSTARVEAKLLYENYTKWCYQNNEMD---LKNRAFYRQLEIRGF- 750

Query: 749 GGIKREKIEKEWKSKRIIKGLKLKP-------AFESVDDNSNIIDFKR 789
                 K EK  K+K  I G+ L         + E  ++  NI   KR
Sbjct: 751 ------KKEKGSKNKTFIHGMTLNEFAGASLFSGEEKEEKDNITPIKR 792


>gi|22296557|ref|NP_680517.1| putative primase [Lactobacillus phage A2]
 gi|6599326|emb|CAB63672.1| putative primase [Lactobacillus phage A2]
          Length = 770

 Score =  408 bits (1048), Expect = e-111,   Method: Composition-based stats.
 Identities = 141/786 (17%), Positives = 260/786 (33%), Gaps = 76/786 (9%)

Query: 15  HNGFKLIP---LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID 71
            + +  IP   +            W     + + + +    G GF            D+D
Sbjct: 26  KHKYTKIPWSAVTGKRASSTNPDDWTTFDNALQYLKQSDFAGLGFFF---VDGYVGIDVD 82

Query: 72  SKDEKTANTFKDTFEILHG--------TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
                         +            +          I I  R       K   +   +
Sbjct: 83  HIGPDLDRLENGDKQDNMAFEFLDAMKSYAETSLSGEGIHIIIR------GKLPGSRHRK 136

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV- 182
            ++++   G++F            Y+    P    ++       E    L    +     
Sbjct: 137 KNVEMYESGRFFAMTGNKI---GPYSGINKPDPPALKKLYEKYIEPKSVLKMPMRTDDRF 193

Query: 183 -----------PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
                        + + K+    +        ++   +  A L+   +  +    D    
Sbjct: 194 AVNNLSEDEIIAKMLNSKTGDRIRLLLVGGWEKFYTSQSEADLALANDLAFWTGRDF--- 250

Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF 291
               +    RGSS  +          +TY     N   +        +  + +   + L 
Sbjct: 251 --SKMDSIFRGSSLMRPKWDE-KHGKTTYGVATLNKAINETSNVYHPERERMKYDLSGLM 307

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
               K   K      + D  N   F  +      Y+   KAWY        +++ +  ++
Sbjct: 308 GESKKPKKKLPPR-SWDDTGNAQRFVDHFGDAARYSYVDKAWY--------VYNGSYWEL 358

Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
                     +   V D+  E                     +    NS  K+  + L  
Sbjct: 359 DKQG-KLGSMVDIVVDDMKREKIVIADGMDPEEAKKKWSKFLKQSRSNSAKKAMTEQL-- 415

Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
               ++  +  D     L   +G +DL  G+      +   +K TG  + +   S E+  
Sbjct: 416 RHRLAVMPEEFDRDKILLNTINGYVDLSDGELHDHDVKKMFSKETGVEYTDTVDSPEWRQ 475

Query: 472 LVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            +   F+  EE++DY  + +G +L G  + Q    + G G +GKS  M+ +K+  G+   
Sbjct: 476 FLDQIFDHDEELIDYLQKAIGYSLTGSTEEQVMFILYGNGRNGKSVFMDTLKHVAGSYAK 535

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
             +  S +++        AN  + RL G+R+V  SE NE   ++   +K++TGGD +TAR
Sbjct: 536 SMSAKSIMIKQ---SDSAANSDIARLKGARLVTASEPNEGVRLDEGLVKELTGGDMVTAR 592

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLE 648
             YG+ + E    F  ++  N    +R  DD  WRR ++IPF+  I     D   A KLE
Sbjct: 593 FLYGSEF-EYKPEFKLWLATNHKPIIRGTDDGIWRRLMLIPFNVQIPENKVDKRLAYKLE 651

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
              ++    W + G   +  +GL    P     A +  R   DT + ++ DCCD+  +  
Sbjct: 652 R-ESVGILNWAVDGALKWQREGLK--APASVQAASKSYRAEMDTLELFVRDCCDLRPDYQ 708

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
             +  L K+Y  + E    Y    +  +     +KQK             +  S     G
Sbjct: 709 APAGELFKAYQSWAESNGEYK---MRKQKFGAEMKQK----------FMSKKNSGIFYVG 755

Query: 769 LKLKPA 774
           LK+K  
Sbjct: 756 LKIKSD 761


>gi|312984184|ref|ZP_07791530.1| putative nucleoside triphosphatase, D5 family [Lactobacillus
           crispatus CTV-05]
 gi|310894403|gb|EFQ43479.1| putative nucleoside triphosphatase, D5 family [Lactobacillus
           crispatus CTV-05]
          Length = 774

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 146/786 (18%), Positives = 265/786 (33%), Gaps = 78/786 (9%)

Query: 15  HNGFKLIPLRL---GDKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDI 70
              +  IP      G  +      W +   +   + K P A G  F            D+
Sbjct: 31  REKYTKIPKNPYNFGAGKSNDQRTWSDFDTALRALHKYPQADGLAFYFA---NGFVGLDV 87

Query: 71  DSKDEKTAN---------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
           D  D    +            + F+ L       I Q  K L           K      
Sbjct: 88  DHIDSDLEDYQEGDTDPNNLVNHFKSLTHNSYTEISQSGKGLHVI-----FKGKIPGKHR 142

Query: 122 TQGHLDILGCGQYFVAYN-----------IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170
             G+ ++   G++F                 P   K Y +     +      P  +++  
Sbjct: 143 RHGNYEMYESGRFFALTGNTIGKPIIKSLDKPAMTKLYEFCFGKDKVTPLH-PENTDD-- 199

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
           E +     EI         S      +      Q+ N +  A ++   +  +    D   
Sbjct: 200 EAIDLPISEIIKRAEDSPSSGKRFTMFMQGGWEQFYNSQSEADMAFANDLAFWCGRDI-- 257

Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
                +    R SS  ++   R     +TY +       +          ++   T   +
Sbjct: 258 ---HKMDQIFRSSSLIRDKWDR-QDGATTYGQRTLQKAINE-TPNVYTPNSEN--TGNYI 310

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
           F  + K   +        D      F      +FLY+   K WY        I++ +   
Sbjct: 311 FSFNEKK--QKPKHYTQDDMGMAQRFIDRYGKNFLYSYIDKEWY--------IYNGSYWS 360

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNS-KSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
                     +    + +L+++    + +  +  +      + +    E S         
Sbjct: 361 PDIKGY-IETASDHVIKNLAKDRPAIDPSLPEKDQKKIINSWNKFVNHERSHKAKVDLIK 419

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
           E      +T  + D     L    G +DL  G+      +   T  TG  + +      +
Sbjct: 420 ELQHRLPVTHSMWDQEDMLLNTPSGYVDLTNGKLHPHDIKKMFTAETGAEYSDTIDCPNW 479

Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
              +   F   EEV+ Y  + +G +  G  K Q      G G +GKS +++ ++   G  
Sbjct: 480 CKFLKQIFQNDEEVIHYVQKAIGYSFTGSTKEQVMFIPYGNGRNGKSVMLDTVQDIAGGY 539

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                 +S + +        AN  + RL GSR+VI SE NE   ++   +KQ+TGGD + 
Sbjct: 540 AKTMNVSSIMTK---YNNNGANSDIARLEGSRMVISSEANEGQRLDEGLVKQLTGGDRIV 596

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
           AR  YG  + E   S+  ++  N    +R  D+  WRR I+IPFD  +     D +   K
Sbjct: 597 ARQMYGKEF-EYQPSYKIWMATNHKPLIRGTDEGIWRRLILIPFDYQVLKDKIDRNLKYK 655

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           LET  ++    W ++G   +  +GL  + PE   KA ++ R+  D    ++ DCC++G  
Sbjct: 656 LET-ESMGILNWIVEGAIMWQVEGL--EAPEQIKKASQKYREEMDVLSGFVADCCELGLG 712

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
              +S  L  SY  +      Y    ++       + +K            K     ++ 
Sbjct: 713 FTAKSGELYDSYKNWAADANEYK---MTLTRFGKEMTKK---------FHRKVKDGYKVY 760

Query: 767 KGLKLK 772
           +G+++K
Sbjct: 761 EGIRIK 766


>gi|107022006|ref|YP_620333.1| Phage-plasmid primase P4-like [Burkholderia cenocepacia AU 1054]
 gi|116688950|ref|YP_834573.1| P4 family phage/plasmid primase [Burkholderia cenocepacia HI2424]
 gi|105892195|gb|ABF75360.1| Phage-plasmid primase P4-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116647039|gb|ABK07680.1| phage/plasmid primase, P4 family [Burkholderia cenocepacia HI2424]
          Length = 746

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 140/786 (17%), Positives = 255/786 (32%), Gaps = 95/786 (12%)

Query: 12  QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67
                GF   P+   +KRP     +++  L  E+        P+    +  G     L  
Sbjct: 11  DLATKGFACFPIVPNEKRPLTPNGFKDASLDPEQHRAWAEQFPSSNIAYATGAPSGRLIV 70

Query: 68  FDIDSKDEKTANTFKDTFEILHGTPIVR---IGQKPKILIPFRMNKEGIKKKKTTESTQG 124
            D+D K+ K+        +  HG        I     I + F   +    K +     + 
Sbjct: 71  IDVDVKNNKSGAKSLVALQKKHGPLPATRTVITPSGGIHLLFTYPEGM--KIQCKVGFRD 128

Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
            +DI   G Y  A     +    Y W                   +E   K         
Sbjct: 129 GIDIRADGGYCGAPPSTIE-GNPYEWVDETVPIAP-----APAWLLEEFAKQ-------- 174

Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244
              ++     KT       +  +  + AF         NG  D                 
Sbjct: 175 GTTRRKRKSRKTAIVPAGNRNQSVMLHAF------SLLNGGLDY---------------- 212

Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304
                  R  ++   Y+    N      +  ++            +  H           
Sbjct: 213 ------ERLEEELLEYNAACCNPPLSESEVSQV--------AVNVIRSHQENSGSN---- 254

Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
              +D  N    S        Y   TK W KK ++ V        +     ++ L+  ++
Sbjct: 255 QHTTDLGNARRMSDLFGDELRYVPQTKQWLKKRESGV-------WQRVDE-LHVLLLARQ 306

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
            +  + EE    +  +     + +     +  E N+  K   +   +    ++++  LD 
Sbjct: 307 LLPLIYEELSRLSPGN-RVEMFEHA----KYTESNTGLKYAVELFRSEPGIAVSAGDLDQ 361

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVM 483
               L  ++G++DL TG  +    +L+IT +    +        +   +      + E++
Sbjct: 362 GEWMLPVRNGLIDLRTGSFMPMDPKLHITYTAAVDYDPDATCPLWEAFLLEIMNRNVELV 421

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
           +Y  R +G  L             G G +GKST +N+++  FG+          + +N  
Sbjct: 422 EYVRRAIGYTLTTLTSEHALFFAFGSGANGKSTFLNVLRALFGDLGAQANGDMLLDKNGG 481

Query: 544 PEAGKANP--SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
                      + RL G R+V +SE  E    +   +K  TGG+ +TARL YGN + E  
Sbjct: 482 AAMSSNAASSEVARLAGKRLVAMSEVEEGRHFSEKTVKWYTGGEDITARLLYGNAF-EFK 540

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659
             F  ++  N    ++  D   WRR  +IPF   I    RD    +KL          W 
Sbjct: 541 PRFKLWLAGNYKPTIKGNDHGIWRRMKLIPFTVTIPPEKRDPDLERKL-RDELPGILNWA 599

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
           L G K +   G  ++ P+       E R   D  ++W+ +      +         K + 
Sbjct: 600 LVGCKQWRENGNKLNEPKAITNEVSEYRGEMDVVESWLSEFTRNDPDGEIHFGDTYKFFK 659

Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
            + E + N+     S +   + L  KG+         +   K  R+ KGL+L    +  +
Sbjct: 660 AWSESQYNFSY---SGKRFGMILADKGY---------KPASKPHRVYKGLRLIVDLQFNE 707

Query: 780 DNSNII 785
           +    +
Sbjct: 708 NTKAYV 713


>gi|262047907|ref|ZP_06020853.1| phage primase [Lactobacillus crispatus MV-3A-US]
 gi|260571785|gb|EEX28360.1| phage primase [Lactobacillus crispatus MV-3A-US]
          Length = 773

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 138/791 (17%), Positives = 269/791 (34%), Gaps = 85/791 (10%)

Query: 15  HNGFKLIPLRL---GDKRPQRLGKWEEQLLSSEKIDK-LPACGFGFVCGVGEQPLYAFDI 70
            N    IP+        +      W +   + + +D+   A G  F            DI
Sbjct: 30  RNKNTKIPIDPYNGRAGKSNDPSTWSDFNTALKALDEIERADGLAFYF---TNGYVGLDI 86

Query: 71  DSKDEKTAN---------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
           D   +  A+            + F ++     + + Q    +           +      
Sbjct: 87  DHISDDLADWHQGDSSVSNLINKFRLMTDETYMEVSQSGTGIHCI-----FKGEIPGNRR 141

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
            +G+ ++   G++F                   +   +     LS+E ++ L+ F     
Sbjct: 142 RKGNYEMYQQGRFFALTG---------------NSIGIPKIVTLSKEKMQALYNFLFGAD 186

Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS----HDEWIPVVMAVH 237
             +    +    +    +  +     R   +        F  G     ++      MA  
Sbjct: 187 KSVPDKIEEPEITALDLSIPD--IIQRAEKSKTGTRFTMFMKGGWEQFYNSHSEADMAFA 244

Query: 238 H-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRST 286
           +       R   K   I R  S     YDE+     +                  ++   
Sbjct: 245 NDLAFWTGRDFHKMDTIFRNSSLMRDKYDEKRGATTYGISLLNKAISEAVNIYNPEQDGK 304

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
              L + +     K  +A  + D       +      F Y A  K WY  + +   + + 
Sbjct: 305 EPDLVF-NWNKPKKRAVARSWDDTGRGLRLNDQFGDVFRYMAADKTWYFYNGSYWELDNG 363

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
              ++ A  +  L+  +   F  + + + +    +  +F   +                 
Sbjct: 364 RHIELAAEKVVNLIKTENPDFSFATQQDKDKAMKEWNKFIKESRS---------HMAKIH 414

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
              E     +I   + D  +  L  + G +DL  G+      +   ++ T + + +    
Sbjct: 415 MIEEFKKYVTIDHGVFDHDNMLLNTESGYVDLTNGELKDHDIKKMFSEQTASEYSDNIDC 474

Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
             + D +   F   E+++ Y  + VG ++ G    Q F  + G G +GKS  +N I+   
Sbjct: 475 PMWKDFLEQIFNHDEKLIHYIQKAVGYSITGSTAEQVFFLLLGTGRNGKSVFINTIRNIL 534

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
           G+     +  S I+ N    +G AN  + RL  +R+V  SE NE   ++ + +KQ+TGGD
Sbjct: 535 GSYAKQMSVESIIVHN---SSGSANSDIARLENTRLVTSSEANEGSRLDESLVKQLTGGD 591

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASF 643
            + AR  YG  + E    F  ++  N   F+R  D+  WRR  V+PF+  I     D + 
Sbjct: 592 RILARFLYGQEF-EYDPKFKIWMATNHLPFIRGTDEGIWRRIKVVPFNVQIPANKVDKNL 650

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
             KL          W ++G   +  +GL    PEV   A ++ R+  D  +A++D+CC  
Sbjct: 651 ENKL-KAEWTGILNWIVQGAIMWQVEGLK--DPEVVQDASKQYRENMDPLEAFLDECCKA 707

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
           G N       L  +Y ++  +        +S       + +K           + + ++ 
Sbjct: 708 GSNYTIMGRPLYNAYRDWARESNE---HLMSMTKFGREMAKK---------LPKTKERNG 755

Query: 764 RIIKGLKLKPA 774
               G++LK  
Sbjct: 756 TRYVGIQLKKE 766


>gi|229008352|ref|ZP_04165829.1| hypothetical protein bmyco0002_51610 [Bacillus mycoides Rock1-4]
 gi|228752920|gb|EEM02472.1| hypothetical protein bmyco0002_51610 [Bacillus mycoides Rock1-4]
          Length = 784

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 156/815 (19%), Positives = 287/815 (35%), Gaps = 94/815 (11%)

Query: 5   QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           QW     +  +N    +P  +     +      W     + +   +    G GFV    +
Sbjct: 20  QWILWRFETRNNKPTKVPCQVDGEMAQANNRSTWSTFATAVKFYLEGDYDGIGFVF-SRQ 78

Query: 63  QPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
                 DID    DEKT     +  + L          K  I I  + N          +
Sbjct: 79  DNYIGIDIDKCVVDEKTNAFATEIIDTLDSYTEFSPSGKG-IHIIIKGNLPQSVLGTGRK 137

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           +T+  L+I   G++F                   +R    D    ++E  E   K+F + 
Sbjct: 138 NTKHGLEIYSYGRFFTFTG---------------NRENSNDVYERTDELAEVFEKYFDDS 182

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238
              +          K     +N     R   +         YNGS   ++     +A+ +
Sbjct: 183 D--IQGRVNLAEFEKDEIKISNDALWERMFRSKNGDEIRSLYNGSLINNDHSASDLALCN 240

Query: 239 ---------------ETRGSSKGKEIAR--RWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
                              +S  ++      +     TY E        +     + +  
Sbjct: 241 HLAFWTGKSATRMDSMFCETSLMRDKWDVIHFRDTNETYGERTIATAISSTSTTILDN-- 298

Query: 282 KKRSTFTSLFYHHGKLI----PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337
           K++    S  +H+G        K     R ++  N    +        Y +D        
Sbjct: 299 KQQFEEFSFDFHNGDAKEVVEDKPKKKFRLTELGNAERIAYEYGHVIKYVSDIG------ 352

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
               +IW     K   +         + +  L +         +S   W     RR    
Sbjct: 353 ---WFIWDGKRWK-LDTKKEIERITAKVLRSLYK------SEDESEMKWARMCERR---- 398

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
            N +  S     +   +     +  D        ++GI+DL+TG+  +  +EL +TK T 
Sbjct: 399 -NIRMNSIK---DLMPLVPGEREDFDRHKYLFNVENGIVDLKTGKLQQHDRELGLTKITN 454

Query: 458 TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
             F E     E+L+ +   F   +E+++Y  R +G +L G    Q  + + G G +GKST
Sbjct: 455 IAFDENTKCPEWLNFLDQIFQGDQELVEYMQRLIGYSLTGEITEQIMVFLIGGGSNGKST 514

Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
            +N IK   G         + I +        AN  + RL+GSR V   E+ E ++++ A
Sbjct: 515 FINTIKDLMGEYGKQAKSDTFIKKKET----GANNDIARLVGSRFVSAIESEEGEQLSEA 570

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
            +KQ+TGG+ + AR      Y E    F  F   N    ++  D+  WRR  ++PF+  +
Sbjct: 571 FVKQITGGEPVLARFL-RQEYFEFIPEFKVFFTTNHKPVIKGVDEGIWRRIRLVPFNLQL 629

Query: 637 A--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
               RD    +KL          W ++G   +   GL  + P + +KA  + ++  D   
Sbjct: 630 PKEKRDKKLPEKLSL-EMPGILNWAIEGCLKWQQSGL--NDPAIVMKATGDYKEEMDILG 686

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            ++ +CC   E++  E+  L + Y+ +  +       ++  R     L+ +G        
Sbjct: 687 PFMFECCFKREDVQIEAKELYEVYANWCFRNGE---HQLKNRAFYRILESQGL------- 736

Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
           K E+  ++K  IKG+ L    ++      +++F +
Sbjct: 737 KRERGNRNKYFIKGVTL-IERKNTFTQQKLLNFDK 770


>gi|189426164|ref|YP_001953341.1| P4 family phage/plasmid primase [Geobacter lovleyi SZ]
 gi|189422423|gb|ACD96821.1| phage/plasmid primase, P4 family [Geobacter lovleyi SZ]
          Length = 695

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 134/722 (18%), Positives = 246/722 (34%), Gaps = 52/722 (7%)

Query: 66  YAFDIDS---------KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
           +  DID          +    A         L     V  G               ++ +
Sbjct: 4   FWLDIDCGPGKPFPDQQAGGRALLEFAKATKLPSPTGVSSGNGLYAYWVLDTAISAVEWR 63

Query: 117 KTTESTQ---GHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
            T    +      D      +   A ++             P   K     ++ E     
Sbjct: 64  TTAALLKKACQAYDFEADPSRTSDAASVLRPVG--VHNRKAPETPKPVKVGIIRERISPE 121

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
            F+   E  +    +    +       +     T  +I    S           +EWI V
Sbjct: 122 EFRLLIEKALLAKGEPLPAVKLDQVAADEFSIKTPADIANLKSALPA-ISPDGREEWICV 180

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
            M +HHE  GS +G  +   WS+  + + +E    KW  F     GD   +  T  ++++
Sbjct: 181 GMGLHHEFAGSEEGLALWEEWSRGSTKFKDEECPEKWAGF-----GDRVDQPVTAGTIYH 235

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
                    L A R S+     + +  +   +               +  ++        
Sbjct: 236 MAKAAGW--LPAERVSEEAALKLLTDMRVSSYFAAKFKDRLRFNPSLDWLVFDGQRWNSN 293

Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
                +   +KE + ++  +      +++       +  + +     +   S AQ +   
Sbjct: 294 TPGGAY-PFLKELIAEIRAKASQIENDAERMSMLKESV-KLEAHNRQAMVISAAQKI--- 348

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
             FS++S  LD     L   +G LDL TG   + +   +IT+     +     +  F   
Sbjct: 349 PDFSVSSCQLDRDPMLLNVLNGTLDLRTGSLKQHSPADFITRLVPIEYNHTATAPVFEAF 408

Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           +S     +  +  +  R  G  L G    Q  + + G G +GKST +N++K   G+    
Sbjct: 409 LSKIMAGNTALTAFIKRWAGYCLTGDTSEQVLLFLYGTGRNGKSTFVNILKKLLGDFAAT 468

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
            A    + +     +     +L  + G+R+V ++E N+ D +N A +K +TGGD +  R 
Sbjct: 469 GAGDLILHKGNGDLS--TLSALAAMRGARLVNLNELNDGDRLNEAAVKNLTGGDLLACRF 526

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLET 649
            +   + E   +F   +  N    +R  D   WRR  ++ F   I++   D    QKLE 
Sbjct: 527 LHKE-FFEYKPAFKLLLFGNHKPSIRGTDHGIWRRLHLLKFGVTISDAECDPHLEQKLE- 584

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
           K       W ++G   +  + L    P    +A  E R   D  + W+DDCC +      
Sbjct: 585 KELPGILAWAVQGCLEWQREKLSP--PAEVKEAVAEYRNSEDALKGWLDDCCQLAPQFRT 642

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
            +  L  S+ +Y   +       +S R  +  L   GF  G           +  + +GL
Sbjct: 643 PAGLLLNSFIQYSNWKG------LSARRFSSMLTVAGFTKGR---------SNGVVWEGL 687

Query: 770 KL 771
            L
Sbjct: 688 AL 689


>gi|284801589|ref|YP_003413454.1| hypothetical protein LM5578_1342 [Listeria monocytogenes 08-5578]
 gi|284994731|ref|YP_003416499.1| hypothetical protein LM5923_1295 [Listeria monocytogenes 08-5923]
 gi|284057151|gb|ADB68092.1| hypothetical protein LM5578_1342 [Listeria monocytogenes 08-5578]
 gi|284060198|gb|ADB71137.1| hypothetical protein LM5923_1295 [Listeria monocytogenes 08-5923]
          Length = 762

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/779 (16%), Positives = 263/779 (33%), Gaps = 82/779 (10%)

Query: 20  LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76
            IP+   D           W +   + + ++K    G GF     ++P +  DID   ++
Sbjct: 31  KIPMNANDGSYGNSVDDRTWADFETALDSLEKYKFDGLGFYF---KKPYFGVDIDDIKDE 87

Query: 77  TANTF--------KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
             +           +  + L       +      +I                  +G++++
Sbjct: 88  IEDYLYGNTENIAGEFIQTLSSYTEYSVSGTGIHII-------AKGSFPEGGRRKGNIEM 140

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
              G++FV           Y         +V +     +          + +        
Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATSAIQYLHTKYIGTNE-VRQINNLQS 188

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243
              +P         R     +            ++G +       +A  +         +
Sbjct: 189 TVDLPVSDIIQRAERSKQGAQFKTLYDGL----WDGLYPSQSEADLAFANMLAFWTGCNA 244

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299
            K  EI R      + +D++     +      +      +     S              
Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVINKAITNTSEIYQPGSELEGYSISIKNQNN 304

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
                    D  N   F         ++   K +Y  D                +I    
Sbjct: 305 TARKVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVK 355

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
             + + + D+  E    +  S + + +       ++ +  +         EA  +  +  
Sbjct: 356 TLVDDVIKDMKSEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478
           +  D    FL  Q+G ++L+ G+ +   ++   TK +   + +   +  +   ++  F  
Sbjct: 411 EEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAG 470

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +E+++Y  + VG +L G    Q    + G G +GKS  +++I   FG+        + +
Sbjct: 471 DKELINYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
           ++    ++  AN  + RL G+R V  +E NE   ++   +KQ+TGGD +TAR  Y + + 
Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF- 586

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
           E    F  ++  N    +R  DD  WRR  ++PF   I +   D     KL         
Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGIL 645

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
            W ++G   +  +GL   +P+    A  E +   D   A+I+DCC+ GEN    + +L +
Sbjct: 646 NWAVEGFLKWQKEGLG--MPKAVENASSEYKSEMDVITAFIEDCCETGENKQINAKTLYE 703

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
           +Y E+      Y    +S+      +       G+K EK  K    +   K + L   +
Sbjct: 704 TYREWARDNGQY---LMSSTKFGKEM-------GLKFEK--KRSNGQTAYKCITLNKEY 750


>gi|163816182|ref|ZP_02207550.1| hypothetical protein COPEUT_02366 [Coprococcus eutactus ATCC 27759]
 gi|158448602|gb|EDP25597.1| hypothetical protein COPEUT_02366 [Coprococcus eutactus ATCC 27759]
          Length = 769

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/786 (15%), Positives = 248/786 (31%), Gaps = 61/786 (7%)

Query: 6   WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           WK + +    NG    +P ++  KR        + +  L+   +D     G G       
Sbjct: 18  WKYEKR----NGRMTKVPYQINSKRASSADKKTFSDFRLAVSAMDGYDGIGMGAF----- 68

Query: 63  QPLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
                 DID      K     +D  E ++    +        ++    +      +    
Sbjct: 69  DDFCMVDIDHCVFGGKLTQMAEDIVEKMNSYTEISPSGMGVRIVCKASSLSYDTDRYYIN 128

Query: 121 STQGHLDILGCG--QYFVAYNIHPKTKKEYTWTTPPHRFKVED-----TPLLSEEDVEYL 173
           + +  L+I   G  + F     +    +     +      +E       P      ++  
Sbjct: 129 NQKLGLEIYAAGVTRKFCTLTGNVIRNRGIEERSAELGTILETYMFRPIPEKKNRMLDIP 188

Query: 174 FKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
             +  + +V       ++       W        ++ +    L+     +  G  ++   
Sbjct: 189 GSYLSDDSVIRLASDSRQGEKFKALWNGEIPDGKSHSDADMSLASILAFWCGGDTEQ--- 245

Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTFTSL 290
               +    R S   +    R  + GSTY             DF          S F  +
Sbjct: 246 ----MDRLFRKSGLMRTKWDRV-QSGSTYGALTLEKAVAQAMDFYRPYARTSAESDFDDM 300

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
                +L         ++D  +  +F+   K    Y    K WY        ++  T   
Sbjct: 301 LQKLIELNVSDNSRYPWNDNGSGRLFADVYKDIARYVPKRKKWY--------VYDGTRWI 352

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
                +  +   K     L           +   +   +   +     N+         +
Sbjct: 353 SDIGGLKTMELAKSLADSLVRYALTITDERRRKDYLEYSAKWQSRNYRNTYI------SD 406

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
           A S++ I     D +  +L  Q+G LDL+TG+    T +  +TK  G  +     +  F 
Sbjct: 407 AQSVYPIAMSEFDRNIYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPKTKNPRFT 466

Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528
             VS       +   +  + +G  L G  + +      G    +GK TLM    +  G+ 
Sbjct: 467 RFVSEVMSGDMDKAKFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGDY 526

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
            +     + I       +      + RL G R   ISE      +N A+IK MTG D + 
Sbjct: 527 GLTVRPET-IAAKPSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLN 585

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646
           AR  + N++ +    F  ++  N    + +       R ++IPFD+      ++ +   +
Sbjct: 586 ARFLHENSF-DFKPQFKLYVNTNYLPAITDMTLFSSGRIVIIPFDRHFEEWEQEQNLKAE 644

Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
                       W ++G      +G     P+    A    +  +D  + ++++  +  +
Sbjct: 645 FSKPEAASAILNWLIEGYTLLQKEG--FSQPKSVKDATMSYQHDSDKIELFVEEFLEQEK 702

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
           +    + ++ ++Y  +      +      +R     L+  G    + R +     +   +
Sbjct: 703 DAECRTSAVYQAYRNWCNDNGYFAEN---SRNFNQALRTIG---SVVRRRPRDGGEKTTL 756

Query: 766 IKGLKL 771
           + G +L
Sbjct: 757 LTGYRL 762


>gi|167920131|ref|ZP_02507222.1| phage/plasmid primase, P4 family protein [Burkholderia pseudomallei
           BCC215]
          Length = 761

 Score =  396 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/787 (16%), Positives = 255/787 (32%), Gaps = 95/787 (12%)

Query: 12  QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67
             +  G   +P+RL DK P     +++     +K        P     +  G     +  
Sbjct: 16  DLVAEGLAPLPIRLNDKVPATQHGFKDANQDPDKHRAWANECPDYNVAYATGPASGYVLV 75

Query: 68  FDIDSKDEKTA--NTFKDTFEILHGTPIVR--IGQKPKILIPFRMNKEGIKKKKTTESTQ 123
            D+D K+       +     +     P  R          + +R  +    K  +  +  
Sbjct: 76  VDVDVKNGDATGLKSISRLEKEHGPLPPTRKVFTPSGGYHLIYRYPENL--KVPSRINFL 133

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
             +D+   G Y +A        + Y +          D P+L               T  
Sbjct: 134 PRVDVKAEGGYCLAPPSII-NDEPYFY----------DEPVLPISRAPAWLLELLCSTQG 182

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGS 243
               K+    SK+ T  N  +    E                         ++ +     
Sbjct: 183 TKPRKRKSAKSKSATIGNRNESVAFE-----------------------GFSLLNAGLNP 219

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
                      ++   Y+  N +      +  +I                          
Sbjct: 220 -------DLLEEELLEYNATNCDPPLSESEVSQIAANV------------ASSHQKNNDS 260

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
            SR +D  N    S        Y ++ K W +K  +          +     +  L+  +
Sbjct: 261 VSRATDLGNAKRMSELYSDTLRYVSEMKRWLEKSPSG-------AWRFIDE-LRVLLLAR 312

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           E +  + +E    N  ++            +  E N   K   +   +    ++++  LD
Sbjct: 313 EIIPMIHDEIRRLNPGNRRELM-----DHAKYSESNKALKDAVELFRSEPGIAVSASNLD 367

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
                   ++G++DL+TG+ +     L+IT++ G  F        +   +      + E+
Sbjct: 368 EGEWMFPAKNGLVDLQTGKFMPMDPALHITQTAGVNFDPDATCPRWEAFLLEIMNGNVEL 427

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
           ++Y  R +G  L             G G +GKST +NL++  FG+          + +N 
Sbjct: 428 VEYLRRAIGYTLTCQTSEHALFFAFGSGANGKSTFLNLLRALFGDLGAQANGDMLLDKNG 487

Query: 543 PP--EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
                +  ++  + RL+G R+V +SE  E    +   +K  TGG+ + AR+ Y N +S  
Sbjct: 488 GQAMSSNASSSEVARLVGKRLVAMSEVEEGRHFSEKTVKWYTGGEDIVARMLYQNAFS-F 546

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKW 658
              F  ++  N    ++  D   WRR  +IPF   I    RD    +KL          W
Sbjct: 547 TPRFKLWLAGNYKPTIKGNDHGIWRRMKLIPFTVTIPPEKRDPDLERKL-RDELPGILNW 605

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
            L G + +   G  +  P +      E R   D  ++W+ +      +         K +
Sbjct: 606 ALVGCQQWRDNGYKLKEPAIITNEVSEYRGEMDVVESWLSEFTRDDPDGEIHFGDAYKFF 665

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
             + E E N+     S + + + L+ KG+    +           R+ +GL L    +  
Sbjct: 666 KAWSEAEYNFSY---SRKRLGMILQDKGYKPVARPH---------RVYQGLTLLVDLQFN 713

Query: 779 DDNSNII 785
           ++    +
Sbjct: 714 ENTGAYV 720


>gi|296394743|ref|YP_003659627.1| phage/plasmid primase [Segniliparus rotundus DSM 44985]
 gi|296181890|gb|ADG98796.1| phage/plasmid primase, P4 family [Segniliparus rotundus DSM 44985]
          Length = 761

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/815 (15%), Positives = 247/815 (30%), Gaps = 90/815 (11%)

Query: 1   MPVMQWKEQAKQAIHNGFK-LIPLRLGDKRPQRLG---------KWEEQLLSSEKIDKLP 50
           M    + E A +    G++ ++PL  G K P   G          W + +  SE+     
Sbjct: 1   MAASVYAEHAPRYWAAGWRGVLPLPPGAKTPPPTGFTGHDGPAPSWADVVAWSEERA--- 57

Query: 51  ACGFGFVCGVGEQPLYAFDIDSKDEK-TANTFKDTFEILHGTPIV--RIGQKPK--ILIP 105
                         +   DID    K   +T  +        P       ++     +  
Sbjct: 58  GSNLALRL---PDGVVGIDIDHYAGKRGGDTLAEAVRRWGPLPPTVMSTSREDGVSGIRL 114

Query: 106 FRMNKEG--IKKKKTTESTQGHLDILG-CGQYFVAYNIHPKTKKEYTW-----TTPPHRF 157
           +R+        +    E   G ++++    +Y VA        + Y W       P    
Sbjct: 115 YRLPSPAALTTQIGFPELGLGGIEVVQRHHRYLVAPPSIHPEGRAYRWLDSQAMGPAELP 174

Query: 158 KVEDTPLLSEED-----VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
           +    PLL E                                    +   R+  ++ +  
Sbjct: 175 EPGSLPLLPERWRDALAAAPAPIAAPAPIAASDPAAALASLRGGAMSETVRERLDKHVAT 234

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGK-EIARRWSKQGSTYDEENFNYKWDT 271
                    ++ +    + ++        G  +   E+ R +    +       +   D 
Sbjct: 235 VRDPGAGSRHDAALKGALALLRLGEQGHPGVREALDELGRAFVAATTADGSRTPHQAVDE 294

Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK 331
           F         +       +            +A R +D  N  +          Y     
Sbjct: 295 FLR-----MVENPRGHRLI----AATPTPDPVAPRLTDEANADLLVAEHGHGLRYDPARG 345

Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
           AW          W  +             +  +    L E+ ++  ++ +          
Sbjct: 346 AW--------LEWDQSRWAYRPDDAACFQAAVKTAKSLPEQTKEEREHKRR--------- 388

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
                      ++  ++        +  + LD+    L    G++DL TG   +   E  
Sbjct: 389 ----SLNLRGLEAMVKTARRDPRIRVDPERLDADPMLLNTPGGVVDLATGALREHDPEAL 444

Query: 452 ITKSTGTPFVEGEPSQEFLDLVS-GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
            TK  G      + +  F   ++    +  E++ Y  R  G+A +G         + G G
Sbjct: 445 CTKLAGCAPDFAQRTPIFDAFLAVSLADDAELIGYLRRLAGLAAIGLPS-PILPFLHGAG 503

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
            +GKS   N++    G+          +         +    + RL G R+V+ SE   +
Sbjct: 504 ANGKSVFANILLRVLGDYATTAPPDFLLASR----GDRHEAEIARLKGMRLVVCSEVERD 559

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
              + A+IK +TGGD +TAR  YG  +     S   +++ N    VR    ++WRR  +I
Sbjct: 560 SRFDEARIKLLTGGDRLTARFLYGQHF-TFAPSHCVWLMGNHQPEVRAGGVSFWRRMRMI 618

Query: 631 PFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           PF   +   +   +  + +  +       W ++G       GL    PE    A  +  +
Sbjct: 619 PFTVVVPEAERVDALDELIAQEEGPGVLAWIVRGALEARRDGL--ADPEKVRAATRDYAE 676

Query: 689 GTDTYQAWIDDCCDIGENL--WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
             D    ++ + C IG       E+  + ++YS +  +    +   ++       L + G
Sbjct: 677 EEDALGRFLAERCRIGGGDMVKIEAGRVYRAYSAWCRRSGESE---MNQNVFGRELTRHG 733

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                    I +    K     L L P  E+ +  
Sbjct: 734 ---------IGRTRSGKWFYTNLHLLPDDEADERE 759


>gi|313123979|ref|YP_004034238.1| DNA-polymerase or DNA-primase [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280542|gb|ADQ61261.1| Putative DNA-polymerase or DNA-primase [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 784

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 139/785 (17%), Positives = 250/785 (31%), Gaps = 72/785 (9%)

Query: 15  HNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDI 70
            N    IP+        +      W +   + E ++K   A G  F  G         DI
Sbjct: 29  RNKNTKIPIDAMTGNNAKTNDPSTWCDFKTAKEGLEKNSRASGLAFFFG---DGYVGLDI 85

Query: 71  DS-------KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
           D        K+   A    D F  L       I Q  + L           K       +
Sbjct: 86  DHIANDIELKELGNAENEVDEFINLTDHTYGEISQSGEGLHFI-----FKGKIPGKRRRK 140

Query: 124 GHLDILGCGQYFVAYN--------IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
            + ++   G++F                + +  T  T     + +   L  + + + +  
Sbjct: 141 SNYEMYQDGRFFALTGNMITSNTISELSSDQMTTLYTRLFGKEDKVIDLHPQVETQAIDL 200

Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235
              +I   +  D       + +      +    +  A L+   +  +    D        
Sbjct: 201 PVPDIIRKM-LDSSKGQRDRLFMQGGWEKIYASQSEADLAFANDLAFWTGKDP-----EK 254

Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF------EEIGDTAKKRSTFTS 289
           +    R S+  ++          TY E   N              +  G        F  
Sbjct: 255 MDTIFRNSALMRDKWDE-KHGAVTYGEMTINKAIAGTTSVYHPTSDVAGPFVDNVFKFNV 313

Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349
                 +          + D      F       F Y    K WY  DK+NV        
Sbjct: 314 PPESAERAKNAEHPHRSYDDMGMAQRFQDRWPDTFRYLVADKEWYYYDKDNV-------W 366

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
           K      N   +    + +L +EP    +              ++++   +  ++  + +
Sbjct: 367 KKDDRK-NVEKACDVVINELKDEPLYVPEGVSEEDAAKAFTKFKKHMRSRAAKEAMIKEI 425

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE--PSQ 467
               + +++    D     L  ++G +DL  G           ++     F         
Sbjct: 426 --MHLLAVSHGEFDQDPMLLNVKNGYVDLTDGTLHDADWTKMFSRQASVEFSPNAEYDHP 483

Query: 468 EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
            +   +   F   +E ++Y  + +G +L G    Q      G G +GKS ++ +I    G
Sbjct: 484 MWDKFLYQTFGGDQEAIEYIQKAIGYSLTGLTSEQVLFFCYGKGRNGKSLMLKVISDILG 543

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
           +     +  + I++        AN  + RL G+R V+ SE NE   +N    KQ+TGGD 
Sbjct: 544 SYSQTMSADTLIVKG---STNGANSDIARLEGARFVVSSELNEGSRLNEGLTKQITGGDR 600

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA-Q 645
           + AR  YG  + E       ++  N    +R  D+  WRR I++PFD  IA  D      
Sbjct: 601 VVARHLYGKEF-EFDPCCKIWMATNHEPIIRGTDEGIWRRIIILPFDHIIAKEDVDPKLY 659

Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
                  +    W ++G   Y  +GLDV  PE    A E+ R   D  QA+++D     E
Sbjct: 660 DKLMSEAVGILNWAVEGAIKYQLEGLDV--PESIKSAVEDYRGQMDEVQAFLEDETVPCE 717

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
                S  L   + ++  +   Y                K F   +K +  +K  +   +
Sbjct: 718 GAQVSSKVLYSKFQDWARRNGEYV------------FSHKAFSQKMKDKCKKKHTRVGTV 765

Query: 766 IKGLK 770
             G++
Sbjct: 766 YLGIR 770


>gi|254933547|ref|ZP_05266906.1| primase [Listeria monocytogenes HPB2262]
 gi|293585111|gb|EFF97143.1| primase [Listeria monocytogenes HPB2262]
          Length = 757

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/750 (16%), Positives = 254/750 (33%), Gaps = 83/750 (11%)

Query: 20  LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76
            IP+   +           W +   +   ++K    G GF     + P +  DID   ++
Sbjct: 31  KIPMNANNGSYGNSVDERTWADFETALASLEKFQFDGLGFYF---KAPYFGVDIDGIQDE 87

Query: 77  TANTF--------KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
             +           +  + L       +      +I                  +G++++
Sbjct: 88  IQDYLYGNTDNIAGEFIQTLASYTEYSVSGAGIHII-------AKGDFPEGGRRKGNIEM 140

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
              G++FV           Y         +V +     +             T  +  ++
Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATSAIQYLH----------TKYIGTNE 179

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSC-----FGEEFYNGSHDEWIPVVMAVHH----- 238
                +   T +                       +  ++G +       +A  +     
Sbjct: 180 VRQTNNLHSTVDLPVSDIIHRAEQSKQGSQFKTLFDGLWDGLYPSQSEADLAFANMLAFW 239

Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHH 294
               S K  EI R        +D++     +      +      +     S         
Sbjct: 240 TGCNSEKMDEIFRSSGLYRQKWDQKRGAQLYGEMVINKAITNTSEIYQPGSDLEGYSISI 299

Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
            K      +     D  N   F         ++   K +Y  D                +
Sbjct: 300 KKQNNTARIVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDN 350

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
           +      + + + D+  E    +  S + + +       ++ +  +         EA  +
Sbjct: 351 VGAVKTLVDDVIKDMKSEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHL 405

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
             +  +  D    FL  Q+G ++L+ G+ +   ++   TK +   + +   +  + + ++
Sbjct: 406 MPVLPEEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQEFLN 465

Query: 475 GYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
             F   +E+++Y  + VG +L G    Q    + G G +GKS  +++I   FG+      
Sbjct: 466 DIFAGDKELINYIQKSVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQ 525

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
             + +++    ++  AN  + RL G+R V  +E NE   ++   +KQ+TGGD +TAR  Y
Sbjct: 526 PQTIMVKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLY 582

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKY 651
            + + E    F  ++  N    +R  DD  WRR  ++PF   I +   D     KL  + 
Sbjct: 583 KDEF-EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDTKVDKQLKYKL-RRE 640

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                 W ++G   +  +GL   +P+    A  E +   D   A+I+DCCD+ E     +
Sbjct: 641 LTGILNWAVEGFLKWQREGLG--MPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNA 698

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLN 741
             + ++Y ++ ++   Y    +S+      
Sbjct: 699 KKMYETYRDWAKENGQY---LMSSTKFGKE 725


>gi|313114054|ref|ZP_07799607.1| nucleoside triphosphatase, D5 family [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623624|gb|EFQ07026.1| nucleoside triphosphatase, D5 family [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 799

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 127/753 (16%), Positives = 245/753 (32%), Gaps = 53/753 (7%)

Query: 19  KLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS-KD 74
              P+        +P     W     +   + +    G G + G     L   DID  +D
Sbjct: 21  AKTPINPATGQNAKPNDPATWGTLEAAQAAVSRFGLRGVGVLLG---DGLCGIDIDHCRD 77

Query: 75  EKTANTFKDTFEILHG--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132
             T        EI+ G  T          + + F   K         +S+ G L++   G
Sbjct: 78  PDTGVLSDMAREIIDGMQTYAEESPSGTGVHLLFTGQKPA---GACRKSSIG-LEMYDGG 133

Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
           +YF               T        +         V      +Q++     +  ++  
Sbjct: 134 RYFTVTGKALNDLAIEERTAQCAAVHAKYLAKPEAPWVPAPAGVWQKVDRSDEELLRTAC 193

Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA-VHHETRGSSKGKEIAR 251
            ++           + +         +  +      W    +  + H  R S   +    
Sbjct: 194 AARDGERFAALYAGDWQAYYNSHSEADLSFCNLLAFWFGADVERMDHVFRTSGLMRPKWD 253

Query: 252 RWSKQGSTYDE-------ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK---- 300
              +   TY          +    +      +    A +     +L   +G   P     
Sbjct: 254 E-RRGAKTYGRWTLERAVSDCQEVYTPSPEPDKTPFADQDEALRALNVKYGTQSPAAAPA 312

Query: 301 -GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
            G+      D  N   F         Y    K W         +W     K     +  +
Sbjct: 313 PGVKTYSLDDTGNARRFRDRYADRVRYNPTDKCW--------MVWDGARWKRDD--LATI 362

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
             + +++ D  ++     ++  +         + ++          AQ L       +  
Sbjct: 363 KGLADEMLDQMDKACFGIRDINTAGALRRHVQKSRSSRSKEAFLKEAQHL---PGIPMLP 419

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478
           +  D +   L  ++GIL+L   + V   +  YIT+     +     +  +   +      
Sbjct: 420 EQFDRNKGLLNLRNGILNLARRELVPHDRARYITRMAQVDYDPAAQAPVWEAFIQSVTGG 479

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             ++ +Y    VG  L G  + Q    + G G +GKST +  +    G+   +NA+A  I
Sbjct: 480 DAQLAEYLQVMVGYCLCGSTREQCMFFLYGDGANGKSTFLETLAKMLGDY-CMNAQADTI 538

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
              R   +G A   + RL G+R V + E ++   ++   +KQMTGG+ +TAR  YG  + 
Sbjct: 539 ASTRSRSSGAARSDVARLKGARFVTLEEGDQGATLDEGLVKQMTGGNTITARFQYGKEF- 597

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAK 656
           E    F      N    +   D   WRR  ++PF + I    +D    QKLE        
Sbjct: 598 EFRPEFKLVEATNHLPKIHGTDVGIWRRIRLVPFTQSIPEEKQDILLPQKLE-AELPGIL 656

Query: 657 KWFLKGVKAYISK---GLD--VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
            W L G++ +++    G    +        A    +Q  D   A++ DC +  E    ++
Sbjct: 657 NWALDGLQKWLANSQGGRRHGLPACAAVDSAVSAYKQDQDRIAAFLADCTEPAEGSTVQA 716

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
             L ++Y  +  +     + R++ +   + +K+
Sbjct: 717 SVLFRTYLNWCSENNE--KWRMANKQFGMEVKK 747


>gi|224501854|ref|ZP_03670161.1| hypothetical protein LmonFR_04967 [Listeria monocytogenes FSL
           R2-561]
          Length = 757

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/765 (16%), Positives = 261/765 (34%), Gaps = 79/765 (10%)

Query: 34  GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTF--------KDTF 85
             W +   + + ++K    G GF     ++P +  DID   ++  +           +  
Sbjct: 48  RTWADFETALDSLEKYQFDGLGFYF---KKPYFGVDIDDIKDEIEDYLYGNTENIAGEFI 104

Query: 86  EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145
           + L       +      +I                  +G++++   G++FV         
Sbjct: 105 QTLSSYTEYSVSGTGIHII-------AKGSFPEGGRRKGNIEMYPDGRFFVMTGQVIDN- 156

Query: 146 KEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQY 205
             Y         +V +     +          + +           +P         R  
Sbjct: 157 --YR--------QVNEATTAIQYLHTKYIGTNE-VRQINNLQSTVDLPVSDIIQRAERSK 205

Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGSSKGKEIARRWSKQGSTY 260
              +            ++G +       +A  +         + K  EI R      + +
Sbjct: 206 QGAQFKTLYDGL----WDGLYPSQSEADLAFANMLAFWTGCNAEKMDEIFRSSGLYRTKW 261

Query: 261 DEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMF 316
           D++     +      +      +     S                       D  N   F
Sbjct: 262 DQKRGAQLYGEMVINKAITNTSEIYQPGSELEGYSISIKNQNNTARKVYGLDDTGNAERF 321

Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
                    ++   K +Y  D                +I      + + + D+  E    
Sbjct: 322 RDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVKTLVDDVIKDMKSEFAYM 372

Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
           +  S + + +       ++ +  +         EA  +  +  D  D    FL  Q+G +
Sbjct: 373 DNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLPDEFDRYKYFLNTQNGYI 427

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALL 495
           +L+ G+ +   ++   TK +   + +   +  +   +   F   +E++DY  + VG +L 
Sbjct: 428 NLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLKDIFAGDKELIDYIQKAVGYSLS 487

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
           G    Q    + G G +GKS  +++I   FG+        + +++    ++  AN  + R
Sbjct: 488 GSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIMVKQ---QSSNANSDIAR 544

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L G+R V  +E NE   ++   +KQ+TGGD +TAR  Y + + E    F  ++  N    
Sbjct: 545 LHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF-EFTPEFKIWMATNHKPI 603

Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
           +R  DD  WRR  ++PF   I +   D     KL          W ++G   +  +GL  
Sbjct: 604 IRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGILNWAVEGFLKWQKEGL-- 660

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
            +P+    A  E +   D   A+I+DCCD+ E     +  + ++Y E+ ++   Y    +
Sbjct: 661 GMPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYETYHEWAKENGQY---LM 717

Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
           S+               I  +  +K+ K+  + +G+ L   + ++
Sbjct: 718 SSTKFGKE---------IGMKFTKKKTKTANVYEGITLNDDYYNL 753


>gi|16801649|ref|NP_471917.1| hypothetical protein lin2587 [Listeria innocua Clip11262]
 gi|16415124|emb|CAC97814.1| lin2587 [Listeria innocua Clip11262]
          Length = 757

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/782 (15%), Positives = 266/782 (34%), Gaps = 82/782 (10%)

Query: 20  LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76
            IP+   +           W +   + + ++K    G GF     ++P +  DID   ++
Sbjct: 31  KIPMNANNGSYGNSVDERTWADFETALDSLEKYRFDGLGFYF---KKPYFGVDIDDIKDE 87

Query: 77  TANTF--------KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
             +           +  + L       +      +I                  +G++++
Sbjct: 88  IEDYLYGNTENIAGEFIQTLSSYTEYSVSGTGIHII-------AKGSFPEGGRRKGNIEM 140

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
              G++FV           Y         +V +     +          + +        
Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATSAIQYLHTKYIGTNE-VRQINNLQS 188

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243
              +P         R     +            ++G +       +A  +         +
Sbjct: 189 TVDLPVSDIIQRAERSKQGAQFKTLYDGL----WDGLYPSQSEADLAFANMLAFWTGCNA 244

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299
            K  EI R      + +D++     +      +      +     S              
Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVINKAITNTSEIYQPGSELEGYSISIKNQNN 304

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
                    D  N   F         ++   K +Y  D                +I    
Sbjct: 305 TARKVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVK 355

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
             + + + D+  E    +  S + + +       ++ +  +         EA  +  +  
Sbjct: 356 TLVDDVIKDMKSEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478
           +  D    FL  Q+G ++L+ G+ +   ++   TK +   + +   +  +   ++  F  
Sbjct: 411 EEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAG 470

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +E+++Y  + VG +L G    Q    + G G +GKS  +++I   FG+        + +
Sbjct: 471 DKELINYMQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
           ++    ++  AN  + RL G+R V  +E NE   ++   +KQ+TGGD +TAR  Y + + 
Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF- 586

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
           E    F  ++  N    +R  DD  WRR  ++PF   I +   D     KL         
Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGIL 645

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
            W ++G   +  +GL   +P+    A  E +   D   A+I+DCCD+ E     +  + +
Sbjct: 646 NWAVEGFLKWQKEGL--GMPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYE 703

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
           +Y E+ ++   Y    +S+               I  +  +K+ K+  + +G+ L   + 
Sbjct: 704 TYHEWAKENGQY---LMSSTKFGKE---------IGMKFTKKKTKTANVYEGITLNDDYY 751

Query: 777 SV 778
           ++
Sbjct: 752 NL 753


>gi|331087335|ref|ZP_08336403.1| hypothetical protein HMPREF0987_02706 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408361|gb|EGG87836.1| hypothetical protein HMPREF0987_02706 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 769

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 117/789 (14%), Positives = 250/789 (31%), Gaps = 67/789 (8%)

Query: 6   WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           WK + +    NG    +P ++  K+        + +  ++   +      G G       
Sbjct: 18  WKYEER----NGRITKVPYQINGKKASSADKNTFSDFRMAVNAMADYDGIGMGAF----- 68

Query: 63  QPLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
                 DID      K     +   E +     +        ++    +    K +    
Sbjct: 69  DDFCMVDIDHCVCGGKLTRMAEVIIEKMDSYTEISPSGTGVRIVCKASSLFYDKGRYYIN 128

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK----------VEDTPLLSEEDV 170
           +++  L+I   G   V       T           R            +   P   + + 
Sbjct: 129 NSKIGLEIYAAG---VTKKFCTLTGNAIRNCGVEERSDQLGIILETYMLRSIPKEKDREQ 185

Query: 171 EYLFKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228
           +    +  + +V       ++       W        ++ +    L+     +  G  ++
Sbjct: 186 DIPGSYLSDGSVVRLASDSRQGRKFKSLWNGEIPEGKSHSDADMSLASILAFWCGGDVEQ 245

Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTF 287
                  +    R S   +    R  + GSTY             +F     T    S F
Sbjct: 246 -------MDRLFRKSGLMRSKWDRV-QSGSTYGALTLEKAVVQAVEFYRPYATTSAESDF 297

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
             +     +          ++D  +  +F+   K    Y  + K WY        ++  T
Sbjct: 298 DDMLQKLVEWNVSDNRRYPWNDNGSGRLFADVYKDIARYVPERKKWY--------VYDGT 349

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
                   +  +   K     L           +   +   +   +     N+       
Sbjct: 350 RWIPDIGGLKTMELAKSLADTLVRYALTIADERRRKDYLEYSAKWQSRNYRNTYI----- 404

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
             +A S++ I     D +  +L  Q+G LDL+TG+    T +  +TK  G  +     S 
Sbjct: 405 -SDAQSVYPIAMSEFDRNIYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKSP 463

Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAF 525
            F+  +S      +E   +  + +G  L G  + +      G    +GK TLM    +  
Sbjct: 464 RFIRFISEVMSGDKEKARFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVM 523

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
           G+  +     + I       +      + RL G R   ISE      +N A+IK MTG D
Sbjct: 524 GDYGLTVRPET-IAAKPSANSQNPTEDIARLAGIRFANISEPRRGLVLNEAQIKSMTGND 582

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASF 643
            + AR  + N++ +    F  ++  N    + +       R ++IPFD+      ++ + 
Sbjct: 583 TLNARFLHENSF-DFKPQFKLYVNTNYLPAITDMTLFSSGRIVIIPFDRHFEEWEQEQNL 641

Query: 644 AQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
             +            W ++G      +G   + P     A    +  +D  Q ++++  +
Sbjct: 642 KAEFSKPEIASAILNWLIEGYTLLQEEG--FNQPTAVKDAIMSYQHDSDKMQLFVEEFLE 699

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
             ++    + ++ ++Y  +      +      +R     L+  G    + R++ +   + 
Sbjct: 700 KEKDAECRTSAVYQAYRNWCNNNGYFAEN---SRNFNQALRTIGM---VVRKRPKDGGEK 753

Query: 763 KRIIKGLKL 771
             ++ G +L
Sbjct: 754 TTLLTGYRL 762


>gi|295402704|ref|ZP_06812647.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294975276|gb|EFG50911.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 832

 Score =  390 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/642 (18%), Positives = 228/642 (35%), Gaps = 64/642 (9%)

Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT--AFLSC 216
           ++  P      +E L    +E+   L  +  S         +         +    F+  
Sbjct: 203 LKINPECRYSLLE-LRDAIEEMEKSLSPEDTSWEQRDYGETHLPDAQVEPILKGCRFIQD 261

Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------- 269
           + +   + +++EW    MA           ++I   WSK    Y E   + K        
Sbjct: 262 YLQHKESTTYNEW----MAALSIGAYCENYEQICHDWSKGHPDYSEAETDRKIVEIRSKM 317

Query: 270 ---------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
                    D F          K ++  SL             +   +D  N        
Sbjct: 318 KPRTCRSIHDEFGTCNGCPYFGKINSPISLGMKKEHRTGTKKPSFMRTDLGNAERLVYRH 377

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
             +  Y     +W+        IW     K    I        E + ++ +E ++  ++S
Sbjct: 378 GDNIRYCNVFGSWF--------IWDGQRWKEDK-INQIQELAAETIRNIYKEAQE-ERDS 427

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
              +       R ++  +     S A+S        +  + LD         +GI+DL T
Sbjct: 428 DIRKTLTEHALRSESRGKIEAMISLAKSKVP-----VMPEELDQDIWLFNCANGIIDLRT 482

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMAL 494
           G+ +   ++  +TK +   +        ++  +      E      E++++  + VG +L
Sbjct: 483 GELLPHDRKKLMTKISPVIYDPKAECPTWIKFLEDIMSDEKGNPKYELIEFLQKAVGYSL 542

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
            G    Q    + G G +GKST +N I+   G+        +  ++     + + N  + 
Sbjct: 543 TGDTSEQVLFFLYGTGRNGKSTFVNTIREILGDYGKQTNADTFTVKR----SDRVNNDIA 598

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            L G+R V  +E+ E   +  + +KQ+TGG+ + AR  Y   + E    F  F   N   
Sbjct: 599 ALKGARFVSATESEEGARLAESLVKQLTGGEAIQARFLYQENF-EYIPQFKIFFTTNHKP 657

Query: 615 FVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
            ++  D+  WRR  +IPF   I    +D    +KL         +W ++G   +  +GL 
Sbjct: 658 VIKGSDEGIWRRIRLIPFTVTIPEEKKDTRLPEKL-KAEMPGILRWAVEGCLKWQREGLG 716

Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
              P+   +A E  +   D+  A+I DCC + E        L  +Y ++ ++   Y+   
Sbjct: 717 --NPDEIKQATEGYKAEMDSLGAFIADCCVVNELAKCWGSDLYTAYQKWCDENGEYE--- 771

Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
           I  R     L+++GF       K ++         G+ LK  
Sbjct: 772 IGKRKFNKRLEERGF-------KKKRGTGGAIEFLGIGLKTE 806


>gi|300766173|ref|ZP_07076138.1| phage/plasmid primase P4 [Listeria monocytogenes FSL N1-017]
 gi|300513131|gb|EFK40213.1| phage/plasmid primase P4 [Listeria monocytogenes FSL N1-017]
          Length = 757

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 137/779 (17%), Positives = 264/779 (33%), Gaps = 82/779 (10%)

Query: 20  LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74
            IP+   D           W +   + + + K    G GF     + P +  DID     
Sbjct: 31  KIPMNANDGSYGNSVDERTWADFETALDSLTKYKFDGLGFYF---KAPYFGVDIDDIQDD 87

Query: 75  ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
                   T N   +  + L       +      +I                  +G++++
Sbjct: 88  IQDYLYGNTENIAAEFIQTLSSYTEYSVSGNGIHII-------AKGNFPEGGRRKGNIEM 140

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
              G++FV                  +  KV +     +          +EI        
Sbjct: 141 YPDGRFFVMTGQVIN-----------NYSKVNEATSAIQYLHTKYIGA-KEIRQANHLQS 188

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243
              +P+        +     +         +  ++G +       +A  +          
Sbjct: 189 TVDLPANEIIQRATQSKQGSQFKT----LFDGLWDGLYPSQSEADLAFANMLAFWTGCDP 244

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299
            K  EI R      + +D++     +      +      +     S              
Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVINKAIANTSEVYQPGSDLEGYSITVKNQNR 304

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
                    D  N   F         Y+   K +Y  D                +I    
Sbjct: 305 TARKVYGLDDTGNAERFRDKFHDIVRYSYINKGFYYYDSKVW---------KYDNIGAVK 355

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
             + + + D+  E       S + + +       ++ +  +         EA  +  +  
Sbjct: 356 TLVDDVIKDMKSEFAYMESESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478
           +  D    FL  Q+G ++L++G+ +   ++   TK +   + +   +  + + ++  F  
Sbjct: 411 EEFDRYKYFLNTQNGYINLQSGELLDHDRQKMFTKISNIEYTDKIDAPLWENFLNDIFAG 470

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +E++ Y  + VG +L G    Q    + G G +GKS  +++I   FG+        + +
Sbjct: 471 DQELIHYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
           ++    ++  AN  + RL G+R V  +E NE   ++   +KQ+TGGD +TAR  Y + + 
Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF- 586

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
           E    F  ++  N    +R  DD  WRR  ++PF   I +   D     KL         
Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGIL 645

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
            W ++G   +  +GL   +P+    A  E +   D   A+I+DCCD+GE    +   L +
Sbjct: 646 NWAVEGFLKWQREGLG--MPKSVENASSEYKSEMDVITAFIEDCCDVGEKQEVDVKVLYE 703

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
           +Y E+ +    Y    +S       L       G+K EK  K+  S+R   G+ L   +
Sbjct: 704 TYREWAKDNGQY---LMSNTKFGKEL-------GLKFEK--KKTNSRRKYIGVALNKEY 750


>gi|295399290|ref|ZP_06809272.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978756|gb|EFG54352.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 765

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/761 (16%), Positives = 243/761 (31%), Gaps = 96/761 (12%)

Query: 28  KRPQRLGKWEEQL---LSSEKIDKL--PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82
           KRP  +  W++     L+  +I          G V           DID ++ +    FK
Sbjct: 47  KRP-CMKGWQDLNRPGLTEREIRSWLRQKGWTGLVI---PDGYDCVDIDDRE-EGELIFK 101

Query: 83  DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL-DILGCGQ-YFVAYNI 140
                  G     I         FR       +  T     G + D    G+   V  + 
Sbjct: 102 ALLRE--GYQFHAIQTVRGFQFFFRSTGAIKGQDATVLMAGGFVGDYRLSGRGQIVLPSE 159

Query: 141 HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200
           +  T     W       ++   P+  E  ++ + K  +  ++P+ +  ++          
Sbjct: 160 N--TGGR-EWVH-IADKELSPMPIFFER-LKKIDKTQRPFSIPMHEGGRNNALYAHCCRL 214

Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260
               YT  +++   S     F+    D+                      R +S      
Sbjct: 215 VEFGYTPEQVSEIASFLNRYFFLPPLDQ----------------------REFSAIL--- 249

Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
                      +   +   +     +   + +               ++  N        
Sbjct: 250 -----------YSALKHEPSGTNYHSPPPMPFPA--RKEGEPRKFNLTEMGNAERLVARN 296

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
             +  Y  + + W         IW      +                ++  E      N 
Sbjct: 297 GENLRYCVEFEEW--------LIWDGKTW-VEDKKKQIERIAIRTFREMYAEAAHEENND 347

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
                        ++    +          A ++  I+ + L+     L   +G++DL T
Sbjct: 348 ARNELLRWAKASEKSSVFLNSI------ARAEAMLPISQEELNKDKFLLNCANGVVDLRT 401

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALL 495
           G+ +   +E  +TK+T   +        ++  +   F        E++ +  + +G AL 
Sbjct: 402 GELLPHAREYMMTKNTHVSYDPNAKCPTWMAFLESIFRDGDNVKYEIISFLQKAIGYALT 461

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
           G    Q    + G G +GKST +N IK   G+        +   +         N  + R
Sbjct: 462 GDISEQVVFFLWGTGRNGKSTFINTIKALLGDYAKQTNSNTFTAK---MNDSGINNDIAR 518

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L GSR V   E+ +   ++ + IKQ+TGG+ +TAR      + E    F  F   N    
Sbjct: 519 LHGSRFVSAMESEDGQRLSESLIKQLTGGEPITARFL-RKEFFEFVPEFKIFFTTNHKPI 577

Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
           ++  D+  WRR  ++PF   I     D    +KL         +W ++G   +  +GL  
Sbjct: 578 IKGDDEGIWRRIRLVPFTYTIPKEQVDKHLPEKL-MNELPGILRWAVEGCLKWQKEGL-- 634

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
             P+    A +E ++  D    +++DCC I  +   + + L K Y ++ E+        +
Sbjct: 635 GEPDEIKNATDEYKEEMDLLSNFLNDCCVIHPDAKVQLNELYKEYIDWCEENSEI---PM 691

Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
             +  +  L  +GF          K   +K    G+ L   
Sbjct: 692 KKQKFSARLVLRGFEK-------RKSTGNKTFFFGIGLSTE 725


>gi|217964665|ref|YP_002350343.1| phage/plasmid primase, P4 family [Listeria monocytogenes HCC23]
 gi|217333935|gb|ACK39729.1| phage/plasmid primase, P4 family [Listeria monocytogenes HCC23]
 gi|307570771|emb|CAR83950.1| bacteriophage primase [Listeria monocytogenes L99]
          Length = 762

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/779 (17%), Positives = 262/779 (33%), Gaps = 82/779 (10%)

Query: 20  LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74
            IP+   D           W +   +   ++K    G GF     + P +  DID     
Sbjct: 31  KIPMNANDGSYGNSADERTWADFETALTSLNKYQFDGLGFYF---KAPYFGVDIDDIQDD 87

Query: 75  ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
                   T N   +  + L       +      +I                  +G++++
Sbjct: 88  IQDYLYGNTENLAAEFIQTLSSYTEYSVSGTGIHII-------AKGNFPEGGRRKGNIEM 140

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
              G++FV           Y         +V +     +          +EI        
Sbjct: 141 YPDGRFFVMTGQVINN---YR--------QVNEATSAIQYLHSKYIGS-KEIRQANHLQS 188

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243
              +P+        +     +            ++G +       +A  +          
Sbjct: 189 TVDLPTNEIIQRAVQSKQGSQFKTLYDGL----WDGLYPSQSEADLAFANMLAFWTGCDP 244

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299
            K  EI R      + +D++     +      +      +     S              
Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVLNKAIANTSEVYQPGSDLEGYSITVKNQNR 304

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
                    D  N   F         ++   K +Y  D                +I    
Sbjct: 305 TVRKVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVK 355

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
             + + + D+  E       S + + +       ++ +  +         EA  +  +  
Sbjct: 356 TLVDDVIKDMKSEFAYMESESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478
           +  D    FL  Q+G ++L++G+ +   ++   TK +   + +   +  + + ++  F  
Sbjct: 411 EEFDRYKYFLNTQNGYINLQSGELLDHDRQKMFTKISNIEYTDKIDAPLWENFLNDIFAG 470

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +E++ Y  + VG +L G    Q    + G G +GKS  +++I   FG+        + +
Sbjct: 471 DQELIHYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
           ++    ++  AN  + RL G+R V  +E NE   ++   +KQ+TGGD +TAR  Y + + 
Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF- 586

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
           E    F  ++  N    +R  DD  WRR  ++PF   I +   D     KL         
Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGIL 645

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
            W ++G   +  +GL   +P+   KA  E +   D   A+I+DCC+ GEN    + +L +
Sbjct: 646 NWAVEGFLKWQREGLG--MPKAVEKASSEYKSEMDVITAFIEDCCETGENKQINAKTLYE 703

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
           +Y E+      Y    +S+      +       G+K EK  K    +   K + L   +
Sbjct: 704 TYREWARDNGQY---LMSSTKFGKEM-------GLKFEK--KRSNGQTAYKCITLNKEY 750


>gi|331091162|ref|ZP_08340004.1| hypothetical protein HMPREF9477_00647 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405384|gb|EGG84920.1| hypothetical protein HMPREF9477_00647 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 769

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 115/786 (14%), Positives = 253/786 (32%), Gaps = 61/786 (7%)

Query: 6   WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           WK + +    NG    +P ++  K+        + +  ++   +D     G G       
Sbjct: 18  WKYEER----NGRITKVPYQINGKKASSADKNTFSDFRMAVNAMDDYDGIGMGAF----- 68

Query: 63  QPLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
                 DID      K     ++  E +     +        ++    +    K +    
Sbjct: 69  DDFCMVDIDHCVCGGKLTRMAENIIEKMDSYTEISPSGTGVRIVCKASSLFYDKGRYYIN 128

Query: 121 STQGHLDILG---CGQYFVAYNIHPKTKKEYTWTTPPHRF----KVEDTPLLSEEDVEYL 173
           +++  L+I       ++        +       +           +   P   + + +  
Sbjct: 129 NSKIGLEIYVSDVTKKFCTLTGNAIRNCGVEERSGQLGIILETYMLRPIPKEKDREQDIP 188

Query: 174 FKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
             +  + +V       ++       W        ++ +    L+     +  G  ++   
Sbjct: 189 GSYLSDDSVVRLASDSRQGRKFKSLWNGEIPEGKSHSDADMSLASILAFWCGGDLEQ--- 245

Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTFTSL 290
               +    R S   +    R  + GSTY             +F     T    S F  +
Sbjct: 246 ----MDRLFRKSGLMRSKWDRV-QSGSTYGALTLEKAVAQAVEFYRPYATTSAESDFDDM 300

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
                +          ++D  +  +F+   K    Y  + K WY        ++  T   
Sbjct: 301 LQKLVEWNVSDNRRYPWNDNGSGRLFADVYKDIARYVPERKKWY--------VYDGTRWI 352

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
                +  +   K     L           +   +   +   +     N+         +
Sbjct: 353 PDIGGLKTMELAKSLADTLVRYALTIADERRRKDYLEYSAKWQSRNYRNTYI------SD 406

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
           A S++ I     D +  +L  Q+G LDL+TG+    T +  +TK  G  +     S  F+
Sbjct: 407 AQSVYPIAMSEFDRNIYYLNCQNGTLDLQTGEFHLHTPQDKLTKIAGAAYDPNAKSPRFI 466

Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528
             +S      +E + +  + +G  L G  + +      G    +GK TLM    +  G+ 
Sbjct: 467 RFISEVMSGDKEKVRFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGDY 526

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
            +     + I       +      + RL G R   ISE      +N A+IK MTG D + 
Sbjct: 527 GLTVRPET-IAAKPSVNSQNPTEDIARLAGIRFANISEPRRGLVLNEAQIKSMTGNDTLN 585

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646
           AR  + N++ +    F  ++  N    + +       R ++IPFD+      ++ +   +
Sbjct: 586 ARFLHENSF-DFKPQFKLYVNTNYLPAITDMTLFSSGRIVIIPFDRRFEEWEQEQNLKAE 644

Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
                       W ++G      +G   D P     A    +  +D  Q ++++  +  +
Sbjct: 645 FSKPEIASAILNWLIEGYTLLQEEG--FDQPTAVKDAILSYQHDSDKMQLFVEEFLEKEK 702

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
           +    + ++ ++Y  +      +      +R     L+  G    + R++ +   +   +
Sbjct: 703 DAECRTSAVYQAYRNWCNNNGYFAEN---SRNFNQALRTIGM---VVRKRPKDGGEKTTL 756

Query: 766 IKGLKL 771
           + G +L
Sbjct: 757 LTGYRL 762


>gi|223044345|ref|ZP_03614380.1| primase [Staphylococcus capitis SK14]
 gi|222442313|gb|EEE48423.1| primase [Staphylococcus capitis SK14]
          Length = 768

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 146/775 (18%), Positives = 264/775 (34%), Gaps = 76/775 (9%)

Query: 1   MPVMQWKEQAKQAIHNGF-KLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGF 56
           M    W     +   NG     P+        +      W +   + E        G GF
Sbjct: 10  MERDTWVCWKIEETANGRKTKRPINPNTGSYAKSNDSSTWSDYETAVEMSKNF--DGIGF 67

Query: 57  VCGVGEQPLYAFDIDSKDEKTANTFKDT-FEILHGTPIVR------IGQKPKILIPFRMN 109
           + G     ++  DID  +++      +   + + G  I        I    K +      
Sbjct: 68  MLG---DGIFGIDIDGVEKEIQEYLANEDVDNIVGEFIETMESYAEISPSGKGIHILVK- 123

Query: 110 KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED 169
                +       +G++++    ++           KE           + +        
Sbjct: 124 ----GELPKGGRRRGNVEMYEELRFLTFTGFRIGRFKEIAVDEMGKINYLHN-------- 171

Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS---- 225
                   + I  P  + K+      T  + +  +  +    +         + G     
Sbjct: 172 --------KYIAQPESETKQINTTKGTGNDLSAEELIDIAKKSKNGLRFTTLFEGDWTQF 223

Query: 226 HDEWIPVVMAVHH-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
           +D      MA  +       R +SK  +I R+ +     +DE      +         D+
Sbjct: 224 YDSQSEADMAFANDLAFWTARDASKMDDIFRKSNLYRDKWDEMRGKDTYGNITINNAIDS 283

Query: 281 AKKR-------STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW 333
                      + F            K      + D  N             Y   +K W
Sbjct: 284 CTNEFIPEKTENDFQIFIMDDAVKPVKKDKRYSYDDTGNAERLKDRFGSFIRYNYTSKNW 343

Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
              D     I      K           + + +  L  E    + +            R 
Sbjct: 344 MFYDSKRWRIDDAGKMK---------GLVDKVIAGLKNEKISGSYDGYDTEEIKKFRTRH 394

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
                N   K      E   +  I + + DS       Q+G +DL TGQ ++  K  + T
Sbjct: 395 WKDSRNHNKKENMLK-ECQHLLPIHNHVFDSDFTLFNTQNGYIDLNTGQLLEHDKNKFFT 453

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
           K +   + +     ++ D ++  F  ++E++ +  RCVG +L G    Q    + G G +
Sbjct: 454 KISKCEYTDNADCPKWEDFLNDIFLGNQELIKFIQRCVGYSLSGYTSEQVLFVLLGNGRN 513

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
           GKS  ++++   FGN        + +  N+      A+P + +L G+R V  +E NE D 
Sbjct: 514 GKSVFLDIMNEVFGNYATNIRPQAIMANNQK---SDASPEIAKLDGARFVTTTEPNEGDR 570

Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
            +   IKQ+TGGD +TAR  Y N + E       ++  N   +VR  D+  WRR+++IPF
Sbjct: 571 FDEGLIKQLTGGDKVTARKLYENEF-EFVPQLKLWMATNHKPYVRGTDEGIWRRFVIIPF 629

Query: 633 DKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
           DK I     D     KL  K      KW ++G   +   GL    P+     ++E R   
Sbjct: 630 DKQIPLKEVDRDLTNKL-KKELPAIMKWCVEGYLEWQKIGL--SEPQSVKAQRDEYRTEM 686

Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
           D+ + ++ D C++GE  +  +  L K+Y  +      Y   R+S+R     +++K
Sbjct: 687 DSTELFLRDVCEMGETKFIRTSHLYKAYDIWARDNHQY---RMSSRKFRNEMEKK 738


>gi|291536672|emb|CBL09784.1| phage/plasmid primase, P4 family, C-terminal domain [Roseburia
           intestinalis M50/1]
          Length = 769

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 115/786 (14%), Positives = 242/786 (30%), Gaps = 61/786 (7%)

Query: 6   WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           WK + +    NG    +P +   ++        + +  L+   +D     G G       
Sbjct: 18  WKYEER----NGRMTKVPYQTNGRKASSADKNTFSDFRLAVSAMDGYDGIGMGAF----- 68

Query: 63  QPLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
                 DID      K     +D  E +              ++    +      +    
Sbjct: 69  DDFCMVDIDHCVFGGKMTQMAEDIVERMDSYTEFSPSGTGVRIVCKASSLSYDTGRYYIN 128

Query: 121 STQGHLDILGCG---QYFVAYNIHPKT----KKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
           + +  L+I   G   ++        +     ++          + +        +  +  
Sbjct: 129 NQKLGLEIYAAGVTKKFCTLTGNVIRNRGVEERSTEIGEILEIYMLRPISKKKNDVQDIP 188

Query: 174 FKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
             +  + +V       ++       W        ++ +    L+     +  G       
Sbjct: 189 GSYLSDDSVVRLASDSRQGEKFKALWNGEIPEGKSHSDADMSLASILAFWCGGD------ 242

Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTFTSL 290
               +    R S   +    R  + GSTY             DF          S F  +
Sbjct: 243 -TGQMDRLFRKSGLMRSKWDRV-QSGSTYGALTMEKAVAQALDFYRPYARTSAESDFDDM 300

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
                +L         ++D  +  +F+   K    Y  + K WY        ++  T   
Sbjct: 301 LQKLIELNVSDNSRYPWNDNGSGRLFADVYKDIARYVPERKKWY--------VYDGTRWI 352

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
                +  +   K     L               +   +   +     N+         +
Sbjct: 353 PDIGGLKTMELAKSLADSLVRYALTITDERIRKDYLEYSAKWQSRNYRNTYI------SD 406

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
           A S++ I     D +  +L  Q+G LDL+TG+    T +  +TK  G  +     +  F 
Sbjct: 407 AQSVYPIAMSEFDCNVYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRFT 466

Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528
             VS       E   +  + +G  L G  + +      G    +GK TLM    +  G+ 
Sbjct: 467 RFVSEVMSGDTEKARFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGDY 526

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
            +     + I       +      + RL G R   ISE      +N A+IK MTG D + 
Sbjct: 527 GLTVRPET-IAAKPSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLN 585

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646
           AR  + N++ +    F  ++  N    + +       R ++IPFD+      ++ +   +
Sbjct: 586 ARFLHENSF-DFKPQFKLYVNTNYLPAITDMTLFSSGRVVIIPFDRHFEEWEQEQNLKAE 644

Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
                       W ++G      +G     P+    A    +  +D  + ++++  +  +
Sbjct: 645 FSRPEAASAILNWLIEGYTILKEEG--FAQPKAVKDATMSYQHDSDKMELFVEEFLEQEK 702

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
           +    + ++ ++Y  +      +      +R     L+  G    I R +     +   +
Sbjct: 703 DAECRTSAVYQAYRNWCNDNGYFAEN---SRNFNQALRTIG---TIVRRRPRDGGEKTTL 756

Query: 766 IKGLKL 771
           + G +L
Sbjct: 757 LTGYRL 762


>gi|327439461|dbj|BAK15826.1| predicted ATPase [Solibacillus silvestris StLB046]
          Length = 796

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/833 (18%), Positives = 280/833 (33%), Gaps = 110/833 (13%)

Query: 6   WKEQAKQAIHNG-FKLIPLRLG------DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVC 58
           W     +   NG F  IP +        + R      W     +++      A G GFV 
Sbjct: 21  WILWKAEKKENGKFTKIPYQADPLAQGAEARANDPRTWSTFATAAKIYTNSNADGIGFVF 80

Query: 59  GVGEQPLYAFDIDS-----------KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR 107
                     DID            ++   ++  K+  E+L       +     + I  +
Sbjct: 81  -SRRDSFVGIDIDHCVTYAADDENRENPIISDFAKEVIEMLDSYTEFSVSGTG-VHIIVK 138

Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
            +          ++++  L+I    +YF    I               R    +    ++
Sbjct: 139 GSLPQSVCGTGRKNSKLGLEIYQHTRYFTMTGI---------------RENSNEIIERTD 183

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH- 226
           E VE+L K+F +      +  K     K     +N Q   R   +         +NG+  
Sbjct: 184 ELVEFLDKYFDDSD-LQGRLVKLQDYEKDEVKLSNEQLWERMFRSKAGDEIRSMFNGNLI 242

Query: 227 -DEWIPVVMAVHH---------------ETRGSSKGKEIARR--WSKQGSTYDEENFNYK 268
            ++     +A+ +                 R ++  +    R  +   G TY E      
Sbjct: 243 NNDRSSTDIALCNHLAFWTGKSATRMDVMMRETALMRPKWDRITYGDTGETYGERTIAKA 302

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP----KGLLASRFSDAYNKAMFSIYKKGHF 324
             +     +    +       +      +      K     R ++  N    +       
Sbjct: 303 ITSTTTTVLDHKHEIEYAEFDVSSTVEAVDDGEEVKPKKKFRLNELGNAERIAYEYGHVI 362

Query: 325 LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384
            + ++             +W     K         + ++     +  E E ++   +   
Sbjct: 363 RFVSEIG---------WMLWDGKRWKYDNK-----LQIERIANKVLRELEKSDDEME--- 405

Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444
                 + R   + N +  S     +   +     +  D         +GILDL TG+  
Sbjct: 406 ----VRWARSCGKRNIRMNSIK---DLMPLVPAEREEFDKHKFLFNCSNGILDLRTGKLQ 458

Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRF 503
           +  ++L ++K     F +      +L+ +   F   EE++DY  R +G ++ G    Q  
Sbjct: 459 QHDRDLRLSKLANVEFDDNAKCPTWLNFLQQIFKGDEELIDYMQRLIGYSMTGDISEQGM 518

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
             + G G +GKST +N+IK   G+  +     + I +        AN  + RL+GSR V 
Sbjct: 519 YFLVGGGSNGKSTFINIIKAMMGDYGLQTKSDTFIKKKN----DGANNDIARLVGSRFVS 574

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
             E+ E +++  + +K +TGG+ + AR      + E    F  F   N    +   D+  
Sbjct: 575 AVESEEGEKLQESLVKTITGGEPILARFL-RQEFFEFTPEFKVFFTTNHKPIIGGVDEGI 633

Query: 624 WRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
           WRR  +IPF  +     RD    +KL          W ++G   +   GL    P+V + 
Sbjct: 634 WRRVKIIPFTLNLAPHQRDKKLEEKLTL-EMSGILNWAIEGCLKWQQSGLK--EPKVVVD 690

Query: 682 AKEEERQGTDTYQAWIDDCCDIGE---NLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
           A    ++  D    ++++ C +     N   E+  L   YS +         + IS R+ 
Sbjct: 691 ATGNYKEEMDILGPFLEERCYMNPKDTNTKIEAKELYNIYSNWCYAAGE---RSISNRSF 747

Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KPAFESVDDNSNIIDFK 788
              L+ KGF          K   +K  + G+ +   KP  E V +N     FK
Sbjct: 748 YRMLETKGFGK-------SKGAGNKMYLVGITISERKPVTEPVIENEKTGGFK 793


>gi|197303471|ref|ZP_03168510.1| hypothetical protein RUMLAC_02193 [Ruminococcus lactaris ATCC
           29176]
 gi|197297469|gb|EDY32030.1| hypothetical protein RUMLAC_02193 [Ruminococcus lactaris ATCC
           29176]
          Length = 769

 Score =  381 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 113/786 (14%), Positives = 242/786 (30%), Gaps = 61/786 (7%)

Query: 6   WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           WK + +    NG    +P +   ++        + +  L+   +D     G G       
Sbjct: 18  WKYEER----NGRMTKVPYQTNGRKASSADKNTFSDFRLAVSAMDGYDGIGMGAF----- 68

Query: 63  QPLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
                 DID      K     +D  E +              ++    +      +    
Sbjct: 69  DDFCMVDIDHCVFGGKMTQMAEDIVERMDSYTEFSPSGTGVRIVCKASSLSYDTGRYYIN 128

Query: 121 STQGHLDILGCG---QYFVAYNIHPKT----KKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
           + +  L+I   G   ++        +     ++          + +        +  +  
Sbjct: 129 NQKLGLEIYAAGVTKKFCTLTGNVIRNRGVEERSTEIGEILEIYMLRPISKKKNDVQDIP 188

Query: 174 FKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
             +  + +V       ++       W        ++ +    L+     +  G       
Sbjct: 189 GSYLSDDSVVRLASDSRQGEKFKALWNGEIPEGKSHSDADMSLASILAFWCGGD------ 242

Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTFTSL 290
               +    R S   +    R  + GSTY             DF          S F  +
Sbjct: 243 -TGQMDRLFRKSGLMRSKWDRV-QSGSTYGALTMEKAVAQALDFYRPYARTSAESDFDDM 300

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
                +L         ++D  +  +F+   K    Y  + K WY        ++  T   
Sbjct: 301 LQKLIELNVSDNSRYPWNDNGSGRLFADVYKDIARYVPERKKWY--------VYDGTRWI 352

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
                +  +   K     L               +   +   +     N+         +
Sbjct: 353 PDIGGLKTMELAKSLADSLVRYALTITDERIRKDYLEYSAKWQSRNYRNTYI------SD 406

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
           A S++ I     D +  +L  Q+G LDL+TG+    T +  +TK  G  +     +  F 
Sbjct: 407 AQSVYPIAMSEFDRNVYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRFT 466

Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528
             VS       E   +  + +G  L G  + +      G    +GK TLM    +  G+ 
Sbjct: 467 RFVSEVMSGDTEKARFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGDY 526

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
            +     + I       +      + RL G R   ISE      +N A+IK MTG D + 
Sbjct: 527 GLTVRPET-IAAKPSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLN 585

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646
           AR  + N++ +    F  ++  N    + +       R ++I FD+      ++ +   +
Sbjct: 586 ARFLHENSF-DFKPQFKLYVNANYLPAITDMTLFSSGRIVIILFDRHFEEWEQEQNLKAE 644

Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
                       W ++G      +G     P+    A    +  +D  + ++++  +  +
Sbjct: 645 FSRPEAASAILNWLIEGYTLLQEEG--FAQPKAVKDATMSYQHDSDKMELFVEEFLEQEK 702

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
           +    + ++ ++Y  +      +      +R     L+  G    + R++     +   +
Sbjct: 703 DAECRTSAVYQAYRNWCNDNGYFAEN---SRNFNQALRTIG---TVVRKRPRNGGEKTTL 756

Query: 766 IKGLKL 771
           + G +L
Sbjct: 757 LTGYRL 762


>gi|254560380|ref|YP_003067475.1| P4 family phage/plasmid primase [Methylobacterium extorquens DM4]
 gi|254267658|emb|CAX23504.1| putative P4 family phage/plasmid primase [Methylobacterium
           extorquens DM4]
          Length = 743

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 136/776 (17%), Positives = 245/776 (31%), Gaps = 83/776 (10%)

Query: 12  QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID---KLPAC-GFGFVCGVGEQPLYA 67
             I  G+ +  L+   K P +L  W    L  E I+     P     G   G     +  
Sbjct: 35  TYIECGYDITVLKPRTKEP-KLKNWTGITLEIEDIEAHGTFPEHYNIGIKLGSASDGIVD 93

Query: 68  FDIDSKDEKTANTFKDTFEILHGTPIVRIGQK--PKILIPFRM-NKEGIKKKKTTESTQG 124
            D+D       +        L  T     G+   P     +R+ +     K K   S + 
Sbjct: 94  VDLDC------DAAVSLGAKLLNTETRVFGRDDNPASHYMYRVFDPHSTVKFKHPISRKM 147

Query: 125 HLDILGCGQYFVAYNIH--PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
            +++ G G   V         T   +   + P    ++   L  +  +      F +   
Sbjct: 148 IVELRGNGSQTVLPGSIYKDGTDIRFEDYSLPEPLNIDWETLKRQCGLIAAGTVFSQF-- 205

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242
             ++  + ++         ++Q   +  T  +        +    + I  + A + +   
Sbjct: 206 -WIEGSRHLLALALGGWAAHKQIDQKTFTQLIEAVAVYASDDDVADRIDCIRASYAKFEA 264

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
                       K     D           +         +     ++     + +    
Sbjct: 265 GG----------KTAWKDDLNECIADGRIMNAVADWLMVGREPEQEAVLKQSKRPLSATS 314

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
                 D      F  Y     ++  D + +Y +  +     +             L  +
Sbjct: 315 DLQSGKD------FCAYVGDSLIFCDDQEQFYHRQNDVYEPVT-------------LAHV 355

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
           KE V D     + +  N +  R         +       ++S  +   +           
Sbjct: 356 KETVMDYVGSLDVDRTNFEEMRKLKAAQSVGRINAIVDVSRSILRISSSK---------F 406

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEE 481
           D+     G ++G+LDL TG+ V+   +  +T+  GT +        FL  +   F   +E
Sbjct: 407 DTDPFLAGCKNGVLDLRTGELVE--PDCIVTRRLGTNYDSDAWCHLFLTFMHQVFEGDQE 464

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
            + +  R VG  L G    Q    + G G +GKST + +I+   G         S +   
Sbjct: 465 KIAFVRRAVGYTLTGSTAGQCMFLVIGTGANGKSTFLKVIQALMGEYGGSIPSHSMMASK 524

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
                      +  L G R V  SE     ++  AK+K MTGGD +  R  YG  Y +  
Sbjct: 525 FG---NDKTDDIASLDGRRFVSASEGEMGQKLAVAKVKLMTGGDTIACRPLYGK-YFDMK 580

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWF 659
             F  +   N    +   D+A WRR  VI F        RD     +L+         W 
Sbjct: 581 PEFKIWFGTNDLPVIAGGDEAIWRRLYVIDFPVSFTEAQRDGGLFDRLKL-ELPGILNWA 639

Query: 660 LKGVKAYISKGLD---VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
           L+GV+     G+    ++ P          R  +DT  ++I+  CD  E      + L +
Sbjct: 640 LQGVREL--GGMKSNFLNPPASVRNETNRYRSDSDTVASFIEAGCDRVEGAVVMMNVLHE 697

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
           +Y+ +         + +S+      L + GF          K  K      G+KLK
Sbjct: 698 TYTRWCN---TSGVEPLSSGLFGKELNRLGFQV--------KRKKEGNGRLGIKLK 742


>gi|281419026|ref|ZP_06250043.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
 gi|281407175|gb|EFB37436.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
          Length = 749

 Score =  379 bits (973), Expect = e-103,   Method: Composition-based stats.
 Identities = 131/793 (16%), Positives = 250/793 (31%), Gaps = 71/793 (8%)

Query: 5   QWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQP 64
           QW         N     P+     +  R   W       +  +     G GF        
Sbjct: 16  QWVCH-----RNKIPFNPITGAPAKAGRPDTWARFEDVVKACENGSYEGIGFEF--NNNG 68

Query: 65  LYAFDIDSKDEKTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
           +   D+D    +      +  EI  + G+         K L  F                
Sbjct: 69  IVGIDLDKVIAEDGTVSTEAAEIVAMLGSYTEYSP-SGKGLHIFVK-----GDIPVDGRK 122

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
           +G +++    +YF        T   Y    P +          +E+  +   K+F +   
Sbjct: 123 KGFIEMYKAKRYFT------MTGNVYGALNPIN--------ERTEQVKQIFNKYFSDSKS 168

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG-----SHDEWIPVVMAVH 237
                      + T  N +       +   F + +  E+ +      S  +   +   ++
Sbjct: 169 KNFVVNIVNNNAATEPNKDYLSIGLAKDAVFKALWNGEYQSEKCTSESEADLALMGKLLY 228

Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297
             +       E   +        D+         +         +  ++  +        
Sbjct: 229 WCSGNIDAAIEAFIKSPYVAGKDDKHTTKLGRSDYLQRTAVKAMQGLTSTAAGDDEQY-- 286

Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357
                      D  N             ++    +WY         W   +     +   
Sbjct: 287 --CKQQEFTLDDMGNARRLVAMCGNSIRFSYIKNSWY--------CWDGKVWLEDETGA- 335

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
                   V  +  E     +  K  +   +    R         K+  +  +      +
Sbjct: 336 INRLADNTVEAMYTEAIKLTEQDKRDKLLKHAAKTRSIAGR----KAMIEGAKHLEGIPV 391

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
                D     L  Q+G+LDL++ +      +  IT+ +   +        +LD +    
Sbjct: 392 IPADFDKDVWLLNLQNGVLDLKSDKLYPHNPDYMITQISNASYNPSAKCPRWLDYLDKVT 451

Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
             + ++M Y  + VG +L G    +    + G G +GK T    + +  G+        S
Sbjct: 452 DGNADLMKYMQKAVGYSLTGITGEECLFILYGTGRNGKGTFAETLIHLLGSYAKTAQVDS 511

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
            +++N       ANP + RL G+R+V  +E  +N  +N + IKQ+TGGD +TAR  YG  
Sbjct: 512 LMLKN--VSGSGANPDIARLKGARVVNAAEPQKNSRLNESLIKQLTGGDMVTARFLYGKE 569

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654
           + E    F  +I  N    +   D+  W R  ++PF        RD      L  K    
Sbjct: 570 F-EYRPEFKLWINTNYKPQISGNDEGIWSRVKLLPFTVYFPPEKRDPHLKDFLREKEIDG 628

Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
              W L+G+K +  +GL  ++PE    A  + R   D  Q ++DDC     N    +  L
Sbjct: 629 ILNWALEGLKLWQKEGL--EMPETMKLATTDYRCEMDIMQKFLDDCTKPKNNSSVGALDL 686

Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
            K Y+ +  +   Y    +S      ++          R   ++  ++  +   ++L   
Sbjct: 687 YKVYTHWCSENGEY---VLSNTKFGRDM---------NRYLNKRNCRTGVVYLNIELTKP 734

Query: 775 FESVDDNSNIIDF 787
           +E+   +   IDF
Sbjct: 735 YENAKQDFEEIDF 747


>gi|212638627|ref|YP_002315147.1| phage associated DNA primase [Anoxybacillus flavithermus WK1]
 gi|212560107|gb|ACJ33162.1| Phage associated DNA primase [Anoxybacillus flavithermus WK1]
          Length = 765

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/758 (16%), Positives = 242/758 (31%), Gaps = 96/758 (12%)

Query: 28  KRPQRLGKWEEQLL---SSEKIDKL--PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82
           KRP  +  W++      +  +I          G V           DID +  +    F 
Sbjct: 47  KRP-CMKGWQDLNRPGMTEGEIRSWLRQKGWTGLVI---PDGYDVIDID-EQTEGELIFN 101

Query: 83  DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL-DILGCGQ-YFVAYNI 140
                 +    +R  +       FR   +   +  T     G + D    G+   V  + 
Sbjct: 102 ALLREEYKFHAIRTIR--GFQFFFRSTGKIKGQDATVLMAGGFVGDYRLSGRGQVVLPSE 159

Query: 141 HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200
           +  T     W       ++   P +  E ++ + K  +   +P+ +  ++          
Sbjct: 160 N--TGGR-EWVHIADG-ELSPMP-IYFERLKKIDKAQRPFPIPMHEGGRNNAMYAHCCRL 214

Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260
               YT  ++    S     F+                                      
Sbjct: 215 VEFGYTQEQVHEIASFLNRYFFL----------------------------------PPL 240

Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
           D+  F    ++    +   +    S+ + +     K   +       ++  N        
Sbjct: 241 DQREFANTINS--ALKHEPSGTNYSSPSPMISPERKEGEQK--KFNLTEMGNAERLVARN 296

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
             +  Y  + + W         IW      +                ++  E      N 
Sbjct: 297 GQNLRYCVEFEEW--------LIWDGKTW-VEDKKKKIERIAIRTFREMYAEAAKEENND 347

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
                        ++    +          A ++  I+ + L+     L   +G++DL T
Sbjct: 348 ARNELLKWAKASEKSSVFLNSI------ARAEAMLPISQEELNKDKFLLNCANGVVDLRT 401

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-----EEVMDYFTRCVGMALL 495
           G+ +   +E  +TK+T  P+        ++  +   F       ++++++  + +G  L 
Sbjct: 402 GELLPHAREYMMTKNTHIPYDPNAKCPTWIAFLESIFRDGGDVKQDIINFLQKAIGYTLT 461

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
           G    Q    + G G +GKST +N +K   G+        +   +         N  + R
Sbjct: 462 GDISEQVVFFLWGTGRNGKSTFINTVKALLGDYAKQTNSNTFTAK---MNDSGINNDIAR 518

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L GSR V   E+ +   ++ + IKQ+TGG+ +TAR      + E    F  F   N    
Sbjct: 519 LHGSRFVSAVESEDGQRLSESLIKQLTGGEPITARFL-RKEFFEFVPEFKIFFTTNHKPI 577

Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
           ++  D+  WRR  ++PF   I     D    +KL         +W ++G   +  +GL  
Sbjct: 578 IKGDDEGIWRRIRLVPFTYTIPKEQVDKHLPEKL-MNELPGILRWAVEGCLKWQKEGL-- 634

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
             P+    A  E +   D    +++DCC I      + + L K Y ++ E+        +
Sbjct: 635 GEPDEIKNATSEYKDEMDLLSNFLNDCCVIHPGAKVQLNELYKEYIDWCEENSEIA---M 691

Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
             +  +  L  +GF          K   +K    G+ L
Sbjct: 692 KKQKFSARLVLRGFEK-------RKSTGNKTFFFGIGL 722


>gi|17488555|ref|NP_511033.1| primase [Listeria phage 2389]
 gi|17402460|emb|CAC85608.1| primase [Listeria phage PSA]
 gi|332311652|gb|EGJ24747.1| Primase [Listeria monocytogenes str. Scott A]
          Length = 757

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/782 (16%), Positives = 261/782 (33%), Gaps = 82/782 (10%)

Query: 20  LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74
            IP+               W +   +   ++K    G GF     + P +  DID     
Sbjct: 31  KIPMNANTGAYGNSVDERTWADFETALASLEKYQFDGLGFYF---KAPYFGVDIDDIKDD 87

Query: 75  ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
                   T N   +  + L       +      +I                  +G++++
Sbjct: 88  IQDYLYGNTENIAGEFIQTLSSYTEYSVSGTGIHII-------AKGNFPEGGRRKGNIEM 140

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
              G++FV           Y         +V +     +          +          
Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATAAIQYLHTKYIGTNEVK-QTNNLQS 188

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243
              +P         R     +         +  ++G +       +A  +         +
Sbjct: 189 TVDLPVNDIIQRAERSKQGAQFKT----LFDGLWDGLYPSQSEADLAFANMLAFWTGCSA 244

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299
            K  EI R      + +D++     +      +      +     S              
Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVINKAITNTSEIYQPGSDLEGYSISIKNQNN 304

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
                    D  N   F         ++   K +Y  D                +I    
Sbjct: 305 TARKVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVK 355

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
             + + + D+  E    +  S + + +       ++ +  +         EA  +  +  
Sbjct: 356 TLVDDVIKDMKSEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478
           +  D    FL  Q+G ++L+ G+ +   ++   TK +   + +   +  + + +   F  
Sbjct: 411 EEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQEFLKDIFAG 470

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +E+++Y  + VG +L G    Q    + G G +GKS  +++I   FG+        + +
Sbjct: 471 DKELINYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
           ++    ++  AN  + RL G+R V  +E NE   ++   +KQ+TGGD +TAR  Y   + 
Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKAEF- 586

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
           E    F  ++  N    +R  DD  WRR  ++PF   I +   D     KL  +      
Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RRELTGIL 645

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
            W ++G   +  +GL   +P     A  E +   D   A+I+DCCD+ E     +  + +
Sbjct: 646 NWAVEGFLKWQREGLG--MPGAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYE 703

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
           +Y E+ ++   Y    +S+               I  +  +K+ K+  + +G+ L   + 
Sbjct: 704 TYHEWAKENGQY---LMSSTKFGKE---------IGMKFTKKKTKTANVYEGITLNDDYY 751

Query: 777 SV 778
           ++
Sbjct: 752 NL 753


>gi|157325276|ref|YP_001468699.1| gp60 [Listeria phage B025]
 gi|66733282|gb|AAY53099.1| gp60 [Listeria phage B025]
          Length = 757

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/782 (16%), Positives = 263/782 (33%), Gaps = 82/782 (10%)

Query: 20  LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74
            IP+   D           W +   +   ++K    G GF     + P +  DID     
Sbjct: 31  KIPMNANDGSYGNSVDERTWADFETALTSLNKYQFDGLGFYF---KAPYFGVDIDDIQDD 87

Query: 75  ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
                   T N   +  + L       +      +I                  +G++++
Sbjct: 88  IQDYLYGNTENLAAEFIQTLSSYTEYSVSGTGIHII-------AKGNFPEGGRRKGNIEM 140

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
              G++FV           Y         +V +     +          + +        
Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATSAIQYLHTKYIGTNE-VRQINNLQS 188

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243
              +P         R     +            ++G +       +A  +         +
Sbjct: 189 TVDLPVSDIIQRAERSKQGAQFKTLYDGL----WDGLYPSQSEADLAFANMLAFWTGCNA 244

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299
            K  EI R      + +D++     +      +      +     S              
Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVINKAITNTSEIYQPGSELEGYSISIKNQNN 304

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
                    D  N   F         ++   K +Y  D                +I    
Sbjct: 305 TARKVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVK 355

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
             + + + D+  E    +  S + + +       ++ +  +         EA  +  +  
Sbjct: 356 TLVDDVIKDMKSEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478
           +  D    FL  Q+G ++L+ G+ +   ++   TK +   + +   +  +   ++  F  
Sbjct: 411 EEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAG 470

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +E+++Y  + VG +L G    Q    + G G +GKS  +++I   FG+        + +
Sbjct: 471 DKELINYMQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
           ++    ++  AN  + RL G+R V  +E NE   ++   +KQ+TGGD +TAR  Y + + 
Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF- 586

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
           E    F  ++  N    +R  DD  WRR  ++PF   I +   D     KL         
Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGIL 645

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
            W ++G   +  +GL   +P+    A  E +   D   A+I+DCCD+ E     +  + +
Sbjct: 646 NWAVEGFLKWQREGLG--MPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYE 703

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
           +Y E+ ++   Y    +S+               I  +  +K+ K+  + +G+ L   + 
Sbjct: 704 TYHEWAKENGQY---LMSSTKFGKE---------IGMKFTKKKTKTANVYEGITLNDDYY 751

Query: 777 SV 778
           ++
Sbjct: 752 NL 753


>gi|300814293|ref|ZP_07094565.1| nucleoside triphosphatase, D5 family [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511560|gb|EFK38788.1| nucleoside triphosphatase, D5 family [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 767

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/791 (14%), Positives = 255/791 (32%), Gaps = 64/791 (8%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPL 65
           WK + +          P   G         +     +SEK+      G G      +  L
Sbjct: 19  WKYETRNNRETKIPFNPTTNGYASVNDPKTFTSFDKASEKLSSY--DGLGIRV---DGKL 73

Query: 66  YAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT-EST 122
            A D+D    +    +  K+          +      K L  F      I       +  
Sbjct: 74  VAIDVDDCVINGDLNDFAKEIV-SHFPQSYIEFSPSGKGLRIFTFLPNSITYNNDIYKMK 132

Query: 123 QGHLDILGCG---QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
              +++   G   ++         T   Y         ++ + P      +E   K  ++
Sbjct: 133 TKEVEVYVSGFTNRFVTV------TGHVYQ------EGEIVEEPEGLLWLLEKYLKREKQ 180

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH-- 237
                   K  +   +     +N +   + +  +         +   D  +  ++A +  
Sbjct: 181 SNTTKKIFKSYLSDEEVIEKASNAKNNEKFLNLWAGNIKAYPSSSEADLALTSILAFYAG 240

Query: 238 -------HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF-DFEEIGDTAKKRSTFTS 289
                     R S   ++     ++ G TY          +  +  +          F  
Sbjct: 241 GDVDQIDRLFRQSELFRDKWDE-NRGGKTYGGITIEKAISSLKEVYKPILKIDPSIEFDL 299

Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349
                 ++         ++D     +F+ + K    Y  + KAWY  ++      + +  
Sbjct: 300 SIEKLKEMGLPLSSKYSWTDIGAGKIFADFYKDSLRYVPERKAWYFYEEGIWIADTGS-- 357

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
                 +  +         L     D     K   +   ++  +          S  +  
Sbjct: 358 ------LKAMKLCMNLANLLHILALDIEDEHKRKAYVKFSNRWQAR----GYRVSVLKDA 407

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
           E     +++    D     L   +G L+L T +  +     Y++K     +     ++ +
Sbjct: 408 EVHHPLNVSD--FDKDPYLLNCTNGTLNLRTMEFYEHRSSDYLSKMADVIYDPNSLNERW 465

Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGN 527
              +       +E   +  + +G  L G  + +    + G    +GK TL   I    G 
Sbjct: 466 NRYIDEIMSGDKEKAKFLQKILGYGLTGDTRHECMAILYGMTTRNGKGTLCESILKVLGT 525

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
               +   +  ++N+   +G  +  + RL G R V I E  +   +N A++K +TG D +
Sbjct: 526 YACASRPETLALKNKVNSSG-PSEEIARLAGVRFVNIPEPGKGLPLNVAQVKSLTGNDTI 584

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQ 645
            AR  + N++ +    F  +I  N    V +       R ++IPFDK      +D +   
Sbjct: 585 NARFLHENSF-DFKPQFKIYINTNYLPIVNDVTVFTSGRMLIIPFDKHFTEEEQDKTLKT 643

Query: 646 KLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
           +   +        W ++G K    +GL   IP+    A  + ++ +D    +++DC + G
Sbjct: 644 EFAKEEVKSAILNWLIEGYKLLQKEGL--TIPDSVKDATLKYQKESDKIAIFMEDCLEEG 701

Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
           ++    +  + + Y  +  +         S +T   +L+ K     IKR++ +       
Sbjct: 702 KDYEVRTSEVYERYRSWSLENG---YYLESMKTFKQSLESK---ATIKRKRPKDGKHKTT 755

Query: 765 IIKGLKLKPAF 775
           ++ G +L   F
Sbjct: 756 VLIGYRLISEF 766


>gi|21223967|ref|NP_629746.1| ATP binding protein [Streptomyces coelicolor A3(2)]
 gi|3192005|emb|CAA19404.1| putative ATP binding protein [Streptomyces coelicolor A3(2)]
          Length = 756

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 141/787 (17%), Positives = 269/787 (34%), Gaps = 77/787 (9%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK-LPA------CGFGFVCGV 60
           ++A      GF + P+    K P+  G  +  + + E++++   +               
Sbjct: 26  DRAAYFARLGFGVFPMPTNKKMPRAKGWPDLAMTTVEEVEEMWRSFTPSGWQNIALTL-- 83

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIV--RIGQKPKILIPFRMNKEGIKKKKT 118
                   D+D K+  TA+  K T E                 +   +R + +   K   
Sbjct: 84  --DGWTVVDVDPKNGGTASLEKLTAEYELPVTRTHHTASGPDSLHFIYRADPDRPIKSGP 141

Query: 119 TESTQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
             S    +DI  G G   VA        + Y   +                   +L +  
Sbjct: 142 LSSRYPGIDIKTGRGSLIVAPGSVI-NGRRYEVVSAAE----------PAVAPSWLSEIR 190

Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMA 235
            +   P+V   +S  PS+  +  ++R  T  E+ A L        NG    W+       
Sbjct: 191 GDAQYPVVPSARSRTPSRA-SAGHSRAATLAELRA-LPPDDPGRGNG----WLTQVAGHL 244

Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF---DFEEIGDTAKKRSTFTSLFY 292
             + T   S   E+    S+    +D++ F    D+    +  +    A       S+ +
Sbjct: 245 ARNHTDHDSYLHELRAIDSESEVPHDKDRFMKTADSIWEREQAKERPKAAAPDKPKSILW 304

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
           HH             +D  N             +      W          W        
Sbjct: 305 HHEH-----------TDLGNGRRLRDLHGEDMRHAP---GW------GWLTWDGRRWARG 344

Query: 353 AS-IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
                 F+ S+ + + +  E  E+  ++    R++  +              +       
Sbjct: 345 DGQARRFMHSVADAISEAIESMEEKQRSDDLMRWFGRSCS-------GPGISAALNEASV 397

Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
                      D+    L   +G++DL TG+ +   ++  +T+ T   +        ++D
Sbjct: 398 MLPIETEISDFDADPHKLLVGNGVVDLRTGELLPVDRKYLLTRGTTVEYDPNADCPMWMD 457

Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            +   F    E+++Y  R  GM L+G N  Q    + G G SGK+TL  ++    G+   
Sbjct: 458 FLGWAFQGDIEMIEYIQRMFGMCLIGNNAHQVAFFLYGPGRSGKTTLTRVLSRLLGDYAT 517

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
               +          +   N  L RL G+R+V+ SET +   IN A+ K+ TG D +TA 
Sbjct: 518 SADLSV-----FNESSSGHNEPLARLAGARLVVFSETRQGQRINEAQFKKFTGEDTLTAS 572

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLE 648
                ++ E   +FTP +  N    +   D    RR  VIP    I++  ++    +++ 
Sbjct: 573 YKNK-SWFEFLPAFTPVMFGNAQPSI-AFDSGVERRMKVIPMRAQISDGQKNPKLVEQMM 630

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
                    W ++G +   ++    D P+   +A +E ++  D    +I++C    E   
Sbjct: 631 LNEGPAIMAWAVEGARLTAAESFVPDPPQ-VAQAVKEYKRENDHIGDFIEECLVFDEGAT 689

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK--SKRII 766
             S  +   YS++ E       K+   R     L +      I+     + +K  + R +
Sbjct: 690 VASDVVWGRYSKWIEAGGVDFVKKADDRAGKSLLVRMLKTWSIENGTPIESFKSSNTRKL 749

Query: 767 KGLKLKP 773
           +G+ L  
Sbjct: 750 RGVALND 756


>gi|114566987|ref|YP_754141.1| hypothetical protein Swol_1465 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337922|gb|ABI68770.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 770

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/802 (13%), Positives = 249/802 (31%), Gaps = 82/802 (10%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGF-VCGVGEQP 64
           W+ + +         +P   G KR   +      +            G G  VCG     
Sbjct: 21  WRYELRDGSQ---TKVPYMSGTKRKANVDDPTTFVAFDTAASATGYDGIGIRVCGR---- 73

Query: 65  LYAFDIDSKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNKEGIKKKK-TTE 120
           +   D+D   E+         + +        + I    + +  F +  +  +    T  
Sbjct: 74  IVGIDLDHCMEEG--KLLPWAQEIVDRFNVTYIEISPSGEGIRIFALLPDSFEYDTQTYY 131

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
             +G++++   G           T +  T T   +     D    +E     L  + Q  
Sbjct: 132 IKKGNIEVYIPGH----------TNRFLTVTG--NTINGADVAETAEALTWLLDTYMQRP 179

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS---HDEWIPVVMAVH 237
           T P            +     + +   +  ++         +NG    +        A+ 
Sbjct: 180 TPPTPAVAAPGESYLS-----DDEVIVKAASSKNGEKFTRLWNGDITGYKSQSEADAALV 234

Query: 238 HE-----TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF- 291
                  +   ++   + R+       +D        D++    I     + + +     
Sbjct: 235 SILAFWCSGDKAQMDRLFRQSCLMREKWDS---LRGVDSYGNTVINKMVSRMTDYYKPII 291

Query: 292 ----------YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
                         +L P       ++D     +F+ + +    Y  + K W+       
Sbjct: 292 PRSAAEDFGVEWLKELDPMDSSKYPWNDIGAGHIFADFFQDRLRYVPERKMWFHYANGV- 350

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
                   +     +  +    +    +     +     K   +       + +    + 
Sbjct: 351 -------WQPDTGNLCAMKYCMDLANLMYTFALEIKDEDKRKSYMKYASRWQSHSNRVNI 403

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
            K      +A     I+    D+       ++G L ++TG+  +      +TK +   + 
Sbjct: 404 LK------DAQVHHPISYGSFDADIYIFNCKNGTLHIDTGEFTEHRSTDLLTKKSPVVYD 457

Query: 462 EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMN 519
               S  F   +        +   +  + +G  L G  + +    + G    +GK TL  
Sbjct: 458 PMAYSGRFASYIDEIMSGDADRAKFLQKILGYGLTGDTRHECMTILYGVTTRNGKGTLCE 517

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
            +    G+    +   + I         + +  + RL G R V I E  +   ++AAK+K
Sbjct: 518 SVLKVLGDYGCASRPET-IAMKSYTNGSQPSEDVARLAGVRFVNIPEPGKGMVLDAAKVK 576

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638
            MTG D + AR  + N++ +    F  ++  N    + +       R I+IPFD+     
Sbjct: 577 AMTGNDTLNARYLHENSF-DFQPQFKIYVNANFLPVINDMTLFSSDRIIIIPFDRHFDEH 635

Query: 639 -RDASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
            RD +  ++   +        W L+G +   ++GL +  P+    A E  +  +D    +
Sbjct: 636 SRDTTLKRRFAEEDVQSAILNWLLEGYRLLQTEGLFL--PKSVKDATERYQHDSDKMALF 693

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
            +D     +     +  +   Y E+ ++   Y       +     L+       + R++ 
Sbjct: 694 FEDSLVADDTAEVMTARVYARYKEWCQENGTY---PEGMKNFKQGLQA---FAEVVRKRP 747

Query: 757 EKEWKSKRIIKGLKLKPAFESV 778
           ++  +   ++ G +L      +
Sbjct: 748 KRGGEKTTLLIGYRLITDIPPL 769


>gi|295108406|emb|CBL22359.1| phage/plasmid primase, P4 family, C-terminal domain [Ruminococcus
           obeum A2-162]
          Length = 769

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 115/786 (14%), Positives = 241/786 (30%), Gaps = 61/786 (7%)

Query: 6   WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           WK + +    NG    +P ++  KR        +    L+   +D+    G G       
Sbjct: 18  WKYEKR----NGCMTKVPYQINGKRASSADKKTFSNFRLAVSAMDEYDGIGMGAF----- 68

Query: 63  QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
                 DID      K     +D  E +     +        ++           +    
Sbjct: 69  DDFCMVDIDHCVSGGKLTQMAEDIVEKMDSYTEISPSGMGVRIVCKASYLSYDTDRYYIN 128

Query: 121 STQGHLDILGCG--QYFVAYNIHPKTKKEYTWTTPPHRFKVED-----TPLLSEEDVEYL 173
           + +  L+I   G  + F     +    +     +      +E       P       +  
Sbjct: 129 NQKLGLEIYAAGVTRKFCTLTGNVIRNRGIEERSAELGTILETYMLRPIPEKKNRTQDIP 188

Query: 174 FKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
             +  + +V       ++       W        ++ +    L+     +  G       
Sbjct: 189 GSYLSDDSVIRLASDSRQGEKFKALWNGEIPDGKSHSDADMSLASILAFWCGGD------ 242

Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTFTSL 290
               +    R S   +    R  + GSTY             DF            F  +
Sbjct: 243 -TGQMDRLFRKSGLMRSKWDRV-QSGSTYGALTMEKAVAQALDFYRPYARTSAERDFDDM 300

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
                +L         ++D  +  +F+   K    Y  + K WY        ++  T   
Sbjct: 301 LQKLIELNVSDNSRYPWNDNGSGRLFADAYKDIARYVPERKKWY--------VYDGTRWI 352

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
                +  +   K     L           +   +   +   +     N+         +
Sbjct: 353 PDIGGLKTMELAKSLADSLVRYALTITDERRRKDYLEYSAKWQSRNYRNTYI------SD 406

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
           A S++ I     D +  +L  Q+G LDL+TG+    T +  +TK  G  +     +    
Sbjct: 407 AQSVYPIAMSEFDRNVYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRST 466

Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528
             V+       +   +  + +G  L G  + +      G    +GK TLM    +  G+ 
Sbjct: 467 RFVAEVMSGDADKARFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGDY 526

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
            +     + I       +      + RL G R   ISE      +N A+IK MTG D + 
Sbjct: 527 GLTVRPET-IAAKPSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLN 585

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646
           AR  + N++ +    F  ++  N    + +       R ++IPFD+      ++ +   +
Sbjct: 586 ARFLHENSF-DFKPQFKLYVNTNYLPAITDMTLFSSGRIVIIPFDRHFEEWEQEQNLKAE 644

Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
                       W ++G      +G     P+    A    +  +D  + ++++  +   
Sbjct: 645 FSRPEAASAILNWLIEGYTILKEEG--FAQPKAVKDATMSYQHDSDKMELFVEEFLEEEN 702

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
           +    + ++ ++Y  +      +      +R     L+  G    + R +     +   +
Sbjct: 703 DAECRTSAVYQAYRNWCNDNGYFAEN---SRNFNQALRAIG---TVVRRRPRDGGEKTTL 756

Query: 766 IKGLKL 771
           + G +L
Sbjct: 757 LTGYRL 762


>gi|228963014|ref|ZP_04124222.1| hypothetical protein bthur0005_62410 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228796668|gb|EEM44069.1| hypothetical protein bthur0005_62410 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 791

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/798 (16%), Positives = 256/798 (32%), Gaps = 89/798 (11%)

Query: 5   QWKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           QW    K+  +     IP +   +  +      W     + +   +    G GFV    +
Sbjct: 20  QWVLWRKEERNGKPTKIPYQANGEMAQANNRRTWSTFATAVKFYLEGDYDGIGFVF-SRQ 78

Query: 63  QPLYAFDIDSKD--EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
                 DID      KT     +  + L         +K  I I  + +          +
Sbjct: 79  DNYIGIDIDKCAVAGKTNTFATEIIDTLDSYTEFSPSEKG-IHIIIKGSLPQSVLGTGRK 137

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           +T+  L+I   G++F                   +R    D    ++E  E    +F + 
Sbjct: 138 NTKHGLEIYSYGRFFTFTG---------------NRENSNDVYDRTDELAEIFEIYFDDS 182

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238
                         K     +N     R   +         +NG+   D+     +++ +
Sbjct: 183 D--RQGRVNLAEFEKDEIKVSNDALWERMFRSKNGDEIRSLFNGNLVNDDHSASDLSLMN 240

Query: 239 ---------------ETRGSSKGKEIAR--RWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
                            R S   ++      +S    TY E        +     +    
Sbjct: 241 HLAFWTGKSATRMDSMFRESGLMRDKWDVIHFSDTNETYGERTIATAISSTSSTIL---- 296

Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
             +  F    +    +      A   +  +   M +       + T         + +  
Sbjct: 297 DYKQQFEEFSFDFRDVGDNEDEARPVNRKF---MLTEMGNAERIATEYGHVIRFVNGSGW 353

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
           Y W     K   S     ++ K  +  L +         +    W     +R        
Sbjct: 354 YTWDGKHWKEDRSRAVERITSK-TLRKLLK------SEDEREVKWGRQCEKRA------- 399

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
                   +   +     +  D+    L  ++G++DL+TG+     ++  +TK     F 
Sbjct: 400 -IRMNSIKDMIPLVPAQREDFDTHQYLLNVENGVIDLKTGKLSPHDRDFMLTKMVNIEFK 458

Query: 462 EGEPSQEFLDLVSGYFESEE------VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
           +GE    +   +   F+  E      ++++  + +G +L      Q    + G G +GKS
Sbjct: 459 QGEDCPNWKLFLDSIFKDVEGNTDYELIEFIQKSIGYSLTSDISEQVMFFLYGSGRNGKS 518

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
           T +N IK   GN        + I +         N  + RL G+R V   E+ E  +++ 
Sbjct: 519 TFINTIKSLLGNYAKQTNSDTFIKKK---HDSGVNNDIARLAGARFVSAVESEEGQQLSE 575

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           A +KQ+TGG+ ++AR      + E   +F  F   N    ++  D+  WRR  +IPF   
Sbjct: 576 ALVKQITGGEPISARFL-RQEFFEFTPAFKVFFTTNHKPIIKGMDEGIWRRVRMIPFIVT 634

Query: 636 IANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
           I     D    +KL          W ++G   +  +   +  P+    A    ++  D  
Sbjct: 635 IPKDKVDRKLPEKLSM-EMSGILNWAIEGCLKWQRE--SLGEPKAIQDATNHYKEEMDIL 691

Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
           + ++ D C +      E+  L   YS +  +E       +  RT    L+        K 
Sbjct: 692 EPFLLDKCFLHPQAKMEAKELYSEYSRWCNEEGEII---LRNRTFYRLLEN-------KN 741

Query: 754 EKIEKEWKSKRIIKGLKL 771
              ++  K+K  + G+ L
Sbjct: 742 IVKKRGAKNKVFLYGVGL 759


>gi|147919628|ref|YP_686631.1| phage-like protein [uncultured methanogenic archaeon RC-I]
 gi|110622027|emb|CAJ37305.1| hypothetical phage-like protein [uncultured methanogenic archaeon
           RC-I]
          Length = 867

 Score =  366 bits (939), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 139/820 (16%), Positives = 256/820 (31%), Gaps = 82/820 (10%)

Query: 14  IHNGFKLIPLRLGDKRPQRLGKWEEQLLSS--EKIDKLPACGFGFVCGVGEQPLYAFDID 71
           +H G  +IPL  G K P     W     S      +K P    G + G        +D D
Sbjct: 68  VHRGASVIPLIPGKKIPYCTWDWSVSEGSGVFYLWEKFPYALIGVMTGK--SGYIVWDFD 125

Query: 72  SKDE--KTANTFKDTFEILHGTPIVRIGQKPKILIPF---------------RMNKEGIK 114
            K    +T N     +  L  + I    +   + + F               +   +G K
Sbjct: 126 KKHGGLETYNLMCQLYPELKESYIEET-RSGGLHVYFTCGDLTVKKGVDIFMKKLADGKK 184

Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT----PPHRFKVEDTPLLSEEDV 170
             K  +     +DI   G   VA       K EY         P    + D   L+   +
Sbjct: 185 VPKWADKNWPGVDICANGSIAVAAPSV-DVKGEYKVLNNKPIQPISQGLIDLLRLTGRVM 243

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN---RQYTNREITAFLSCFGEEFYNGSHD 227
           +       E      K +   IP++ +         +     +    +     F    + 
Sbjct: 244 DAEAFEKAEADPAYSKVEAQPIPNRYYKEQFAPICIKGIVDSLKEGKADNDSMFALACY- 302

Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI---------- 277
               + + + +E   S                +D     +  + +               
Sbjct: 303 ---LMGLNLENEAILSVY---------SVSPKFDRGLTEHYLNYYRRMGYKCQTCVTMQA 350

Query: 278 -----GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332
                G     +    +  Y +   +      +   +     M +        Y   T+ 
Sbjct: 351 NGLCTGGAGCNKVKSPAWNYRNTYYVENWPYDNAKDEKGVADMLADLYGDDIRYVRGTEK 410

Query: 333 WYKKDKNNVYIW-SLTLDKIT-----ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
           WY  +  N                    +M+ L+ +      ++E        +     +
Sbjct: 411 WYTWNGENWPEDVDEAHLSRMITCMADLVMDRLLFLSSLTKTITEGEARKAHKAHIENLY 470

Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
                 R      S  K  + ++E+  + S+  D LD     +   +G  +L+T + +  
Sbjct: 471 RQFHKMRTVGNIKSMIKMASMTIESIILDSV--DELDKDKHLINLLNGAFNLDTSEFIPH 528

Query: 447 ---TKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502
              TK   +T      +        F   +       +++ DY  R +G AL G    ++
Sbjct: 529 GERTKPYLMTLRANVAYNPEAKRPRFDKFIDEITCGDKDLADYLQRSLGYALSGYTGEEK 588

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
           F    G G +GKS L   I Y  G+        + IM   P      + S  RL G R +
Sbjct: 589 FFAWFGNGRNGKSKLAEAILYLMGDYASSANATAFIM---PKNGNIRSFSFARLRGKRFI 645

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
             SE  EN   N  +IK+    D +TA   +G  + +       F + N    +   D +
Sbjct: 646 RCSEVPENSVWNDVRIKEFLS-DTITAEEKFGAEF-DYKPQGKLFFLCNHLPAMP-KDRS 702

Query: 623 WWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
              ++ V+PFD  +         +   K        W ++G + + +  L   I +   +
Sbjct: 703 TETKFFVVPFDLQLEPHQVDMGIEEALKAEAEGILLWMIEGYQKWKANDLR-RISQAVKE 761

Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
           A +   +  D + A++ D C I  +   ++  L  ++  ++E          S       
Sbjct: 762 ASDRYWRDADWFAAFLSDMCVIDPSAEVDAGELYTTFKSWQE---RVGAPIQSATAFGKR 818

Query: 742 LKQKGFI-GGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
           L   GF     KR   +   ++  +  GLKLK A  + +D
Sbjct: 819 LTSSGFKSRESKRTDRDGRKRTVNLRIGLKLKIAIATCED 858


>gi|148555111|ref|YP_001262693.1| P4 family phage/plasmid primase [Sphingomonas wittichii RW1]
 gi|148500301|gb|ABQ68555.1| phage/plasmid primase, P4 family [Sphingomonas wittichii RW1]
          Length = 955

 Score =  364 bits (934), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 151/886 (17%), Positives = 259/886 (29%), Gaps = 160/886 (18%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKRP-------------QRLGKWEEQLLSSEKID----K 48
           + + A      G+ + P    +KRP                G  ++     E I     K
Sbjct: 31  FLDAALGYAARGWPVFPCNPKNKRPLLGKDRDAQGNAIPGTGGLKKASTDPETIRGWWRK 90

Query: 49  LPACGFGFVCGVGEQPLYAFDID------------SKDEKTANTFKDTFE---------- 86
            P    G + GV    L+  D D              D  T    + T E          
Sbjct: 91  WPKAMIGLLTGV--NGLFVVDFDPGIETDPKTGEPIMDPVTGEPIEYTLEGLKAVLCFQI 148

Query: 87  --ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKT 144
              L  +  VR   K  + + FR   EG    +   +    +D+ G G Y +A      T
Sbjct: 149 GGPLPASLAVRTAGKGGVHVYFRQPDEG-ADIRNRNNLPHRIDVRGTGGYVIAPPSVMDT 207

Query: 145 KKEYTWTTPPHRFKVEDTPLLSEEDVEYL----FKFFQEITVPLVKDKKSIIPSKTWTNN 200
            +EY W       +  + P    + +                P        +   T   +
Sbjct: 208 GREYRWLHGDADVEPVEAPAALVDILRKPKGSAPSENVGANAPASSRPTVAVDRPTSEAD 267

Query: 201 NNRQYTNREITAFLS---CFGEEFYNGSHDEWIP-VVMAVHHETRGSSKGKEI------- 249
              Q   R   A L           NG+ +  +    +A+ H     +  +E+       
Sbjct: 268 AEEQALRRYGLAALDREVEKARTAPNGTRNNTLNACGLALGHLVGAGALSRELAISALVD 327

Query: 250 ----ARRWSKQGST------------------------------------------YDEE 263
                R   K   T                                              
Sbjct: 328 VARAWRDIDKSTDTITRAVDDGAADPRELAHVRADARDRFRRFAGRRRDNPSAASGLRAA 387

Query: 264 NFNYKWDTFDFEEIGDTA---KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
                + +      GD A     R +  S      + +   L     +D  N   +    
Sbjct: 388 EIEQSFQSGSEANDGDAAGVETGRRSTASQRARAARELHGKLARYNRTDLGNAERWRDRF 447

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM-----NFLVSMKEDVFDLSEEPED 375
              F Y+              + W     K+ ++         L S+ + V  +  E   
Sbjct: 448 GDDFRYSPALG---------WFAWDRKRWKLLSAEANKVPGEVLASVFKMVRAIRREAWV 498

Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA------------------GSIFSI 417
              +             R   +E  KAK  + +L A                      +I
Sbjct: 499 VRASGVPDLEKNPGGLDRTVFDEKGKAKRLSAALFAWADTSEGNARLTCVAKLAMPFITI 558

Query: 418 TSDLLDSSSRFLGEQDGILDLE-----------TGQKVKPTKELYITKSTGTPFVEGEPS 466
             D  D        Q+G L                + +   +   +TK +   F     S
Sbjct: 559 EPDAFDRDLYAFNVQNGTLRFRRERRPDGSWRVMMKLMDHDRRDLLTKISPVTFDPEAKS 618

Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
             +  L+        +  Y  +  G++L G    Q+     G GG+GK T++N   +  G
Sbjct: 619 PVYDGLLEWAQPDPAMRRYLHQWGGLSLTGETGEQKLHFWHGGGGNGKGTVLNAWCHVAG 678

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
           + +   +  + + Q       KA P L +L G R++ +SE  E  ++  A IK +TG D 
Sbjct: 679 DYFASVSIETFLDQGPKKSGDKATPDLAKLPGVRLLRVSEPEERAQLAEALIKLVTGQDP 738

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFA 644
           ++ R  +   + E    F   I+ N  L +R  D   WRR  +IP+D  I  A++D +  
Sbjct: 739 LSVRHLHK-GFFEFLPHFKLTIMGNHWLGIRGTDKGIWRRVKLIPWDASIDDADKDETLP 797

Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
            +L            +KG+  ++  GL    P    +A    R+ +D    ++  C    
Sbjct: 798 DQL-KAEASGILNHMIKGLLDWMRNGL--IEPRSVTQATAAYREASDPLGRFLALCVRPA 854

Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
           +    +S  L   Y  +              +T    L  KG+   
Sbjct: 855 QGKRVQSSRLHAVYEAWCAAASE---PTWKNKTFAQALLDKGYKKK 897


>gi|227431773|ref|ZP_03913800.1| DNA-polymerase or DNA-primase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352456|gb|EEJ42655.1| DNA-polymerase or DNA-primase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 791

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 138/796 (17%), Positives = 260/796 (32%), Gaps = 80/796 (10%)

Query: 15  HNGFKLIPLRL---GDKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDI 70
            N +  +P+     G  +      W +   +S  ++    A G  F         +  DI
Sbjct: 27  KNKYTKVPIDPYSGGAGKSNDSSTWSDFATASNAMEHFANADGLAFYFA---NGYFGIDI 83

Query: 71  DSKDEKTANTFKDTFEILHGTPIVRIGQK-------PKILIPFRMNKEGIKKKKTTESTQ 123
           D          +   +       V   Q         + +                +   
Sbjct: 84  DHIKSDVDGFIEGDRDNNIVDEFVSSTQSYTERSMSGEGIHIIAK-----GNLPEGQRRH 138

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
            + ++   G++F             T T      KV D   +        F    +I V 
Sbjct: 139 NNFEMYDNGRFFALTGD--------TITKSESIMKVPD--EVIGRLHRKYFMKASKINVD 188

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH----- 238
           L     + +  +  T        +      +    +  +   +       +A+ +     
Sbjct: 189 LG-VVDNTVTERIDTPALLEMMYSSSAGVRIKHLIDGGWENDYASQSEADLALANYLSFW 247

Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKW----------------DTFDFEEIGDTAK 282
             R  ++  EI R        Y+E+     +                   + + + D   
Sbjct: 248 TGRDFAQMDEIFRDSVLFRDKYNEKRGQTTYGIALLTKAISEQTEVYHGKNLKPLIDLDD 307

Query: 283 KRSTFTSLFYHHGKLIPKGLLAS-RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
             +  T       +           + D      F  Y   +FLY   T+     D    
Sbjct: 308 LPTFLTGNAEIVAEKDDSPKQKFFSYDDTGLAERFQYYYGDNFLYDTITRKSMYYDGQVW 367

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
              +  L + T +     +  + +     E   D+NK     +  F    R  + +EN+ 
Sbjct: 368 QEDNYRLLEKTMNKTVDRIKEEPEFTIAPENMGDSNKTPDELKAAFKKKSRSHSAKENAI 427

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
                   E  ++ ++T+D  D     L    G+L+L +G     + E   TK T   + 
Sbjct: 428 K-------ELRNLITVTTDDFDKELSVLNTPSGVLELTSGAVKNSSHEDRFTKITNAEYN 480

Query: 462 EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
           + +  + +L  +   F  +EE++++  R +G A  G    +    + G G +GKS  MN 
Sbjct: 481 DKKAPERWLAFLEQTFKGNEELIEFTQRALGYAATGTMDEEVMFILHGNGKNGKSVFMNT 540

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           I Y  G+  + N +   +  +R   +G  +  + R+ G+R++++SE  E   +    IK+
Sbjct: 541 IDYVLGDYSI-NVDPETVFASRSRNSGGPSGDIARMKGARLMVLSEPEEGKPLAEGLIKK 599

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR- 639
           +T  D +TAR  + N   E   + T F++ N    +   DD  WRR I IPF   +    
Sbjct: 600 ITSKDTITARKLHSNE-IEFRPTGTIFMMTNHKPIINGTDDGIWRRLIFIPFRNQVKTEN 658

Query: 640 -DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
            D     KL          W  +G   +   GL+   P V L    E R   D  Q++I+
Sbjct: 659 MDKKLEDKL-RTEADAILAWIQEGTMKWQRDGLNP--PPVVLNETNEYRDEMDDVQSFIE 715

Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
           +  D   +   E   +A  +  ++          ++ + +   L  K           +K
Sbjct: 716 EYFDYSTDERTEFKEIATRFDTWKRLHG----VDMTNKKLGRELGTK---------FEKK 762

Query: 759 EWKSKRIIKGLKLKPA 774
               K    G+ LK  
Sbjct: 763 RSHGKVYYYGISLKAE 778


>gi|237653460|ref|YP_002889774.1| P4 family phage/plasmid primase [Thauera sp. MZ1T]
 gi|237624707|gb|ACR01397.1| phage/plasmid primase, P4 family [Thauera sp. MZ1T]
          Length = 782

 Score =  363 bits (931), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 113/573 (19%), Positives = 218/573 (38%), Gaps = 38/573 (6%)

Query: 195 KTWTNNNNRQYTNREITAFLSCFGEEFYNGS-HDEWIPVVMAVHHETRGSSKGKEIARRW 253
           ++       +     + +  +        G   D ++ V+          ++  E+AR W
Sbjct: 220 RSALPEPETRENVERLRSAAAAIPSSKAKGCTRDIYLTVLWGFAATGWNCAE--ELAREW 277

Query: 254 SKQGS-TYDEENFNYKWDTFDFEEIG--------DTAKKRSTFTSLFYHHGKLIPKGLLA 304
                  +DE++F   W ++D +             A++          +    P   +A
Sbjct: 278 CMTSPEDFDEDDFGKDWRSYDAQRTERIGMGSVFKLAEQNGWVDPRHVVNSTKQPTPDIA 337

Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
              +D  N   F         Y  + + W         +W     +        +   K 
Sbjct: 338 QTLNDTSNAERFVRACGERLRYVVELRIW--------LVWHEGHWRYDRKG-QIVELAKR 388

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
               +  +  +    +     +   +   Q +         AQ+       +++   LD+
Sbjct: 389 VATRMFSDAGELATAADRNALFKWANASLQ-LPRLEAMVKLAQA-----PLAVSVSELDA 442

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVM 483
               LG ++G+++L TG   +   E  ITK     +V G     +  ++ G    + ++ 
Sbjct: 443 DPWLLGVKNGVVELRTGTFRQSRPEDLITKIANVEYVAGATCPTWEAMLDGCMGGNRQLA 502

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
           D+  R  G  L G    Q F    GVG +GKST++N ++   G   + +     + Q R 
Sbjct: 503 DFIQRAAGYTLTGSTSEQVFFFAYGVGANGKSTVINALREIMGGHGLQSQPEVIMAQ-RN 561

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
                  P L RL G R+V + ET +   ++ +++KQM+GGD MTAR+ +G  + +    
Sbjct: 562 TNPSGPTPELARLAGVRMVAMVETEDGQRLHESRVKQMSGGDAMTARVLHGEPF-DFVPK 620

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLK 661
           F  ++  N    +R  D   WRR ++IPF   I    RD   A+KL          W ++
Sbjct: 621 FKLWLAGNHRPVIRGDDHGIWRRIVLIPFLVTIPPEKRDRMLAEKL-RDEYPGVLNWLIR 679

Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
           G   +   GLD+  P   ++  ++ +   D    W+D+ C +G  +   + S  + YS +
Sbjct: 680 GCLEWQRVGLDL--PSDVVREVDQYKSDMDLIAQWLDEQCSVGPAMRCRARSAYQDYSTW 737

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            +   +   + I+       L ++GF    +R+
Sbjct: 738 AKDGGH---QVITEVRFAQKLDERGFTKRKERQ 767


>gi|304440020|ref|ZP_07399913.1| phage/plasmid primase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371512|gb|EFM25125.1| phage/plasmid primase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 767

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 117/791 (14%), Positives = 254/791 (32%), Gaps = 64/791 (8%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPL 65
           WK + +          P   G         +     +SEK+      G G      +  L
Sbjct: 19  WKYETRNNRETKIPFNPTTNGYASVNDPKTFTSFDKASEKLSSY--DGLGIRV---DGKL 73

Query: 66  YAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT-EST 122
            A D+D    +    +  K+          +      K L  F      I       +  
Sbjct: 74  VAIDVDDCVINGVLNDLAKEIV-NHFPQSYIEFSPSGKGLRIFTFLPNSITYNNDIYKMK 132

Query: 123 QGHLDILGCG---QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
              ++    G   ++         T   Y         ++ + P      +E   K  ++
Sbjct: 133 TKEVEAYIAGFTNRFVTV------TGHVYQ------EGEIVEEPEGLLWLLEKYLKREKQ 180

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH-- 237
                   K  +   +     +N +   + +  +         +   D  +  ++A +  
Sbjct: 181 SKSNKQNFKSYLTDEEVIEKASNAKNKEKFLNLWAGNIKAYPSSSEADLALTSILAFYAG 240

Query: 238 -------HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF-DFEEIGDTAKKRSTFTS 289
                     R S   ++     ++ G TY E        +  +  +          F  
Sbjct: 241 GNTDQIDRLFRQSELFRDKWDE-NRGGKTYGEITIEKAISSVKEVYKPISRIDPSIEFNL 299

Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349
                 ++         ++D     +F+ + K    Y  + KAW+  +       + +  
Sbjct: 300 SIEKLKEMGLPLSSKYSWTDIGAGKIFADFYKDSLRYVRERKAWHFYEDGIWIADTGS-- 357

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
                 +  +    +    L     D     K   +   ++  +          S  +  
Sbjct: 358 ------LKAMKLCMKLANLLHILALDIEDEHKRKAYVKFSNRWQAR----GYRVSVLKDA 407

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
           E     +++    D     L   +G L+L T +        Y++K     +     ++ +
Sbjct: 408 EVHHPLNVSD--FDKDPYLLNCTNGTLNLRTMEFYAHRSSDYLSKMADVIYDSKSLNERW 465

Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGN 527
              +       +E   +  + +G  L G  + +    + G    +GK TL   I    G 
Sbjct: 466 NIYIDEIMSGDKEKAKFLQKILGYGLTGDTRHECMAILYGMTTRNGKGTLCESILKVLGT 525

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
               +   +  ++N+   +G  +  + RL G R V I E  +   +N A++K +TG D +
Sbjct: 526 YACASRPETLALKNKVNSSG-PSEEIARLAGVRFVNIPEPGKGLPLNVAQVKSLTGNDTI 584

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQ 645
            AR  + N++ +    F  +I  N    V +       R ++IPFD+      +D +   
Sbjct: 585 NARFLHENSF-DFKPQFKIYINTNYLPIVNDVTVFTSGRMLIIPFDRHFTEEEQDKTLKT 643

Query: 646 KLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
           +   +        W ++G K    +GL   IP+    A  + ++ +D    +++DC + G
Sbjct: 644 EFAKEEVKSAILNWLIEGYKLLQKEGL--TIPDSVKDATLKYQKESDKIAIFMEDCLEEG 701

Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
           ++    +  + + Y  +  +         S +T   +L+ K     IKR++ +       
Sbjct: 702 KDYEVRTSEVYERYRSWSLENG---YYLESMKTFKQSLESK---ATIKRKRPKDGKHKTT 755

Query: 765 IIKGLKLKPAF 775
           ++ G +L   F
Sbjct: 756 VLIGYRLISEF 766


>gi|258516810|ref|YP_003193032.1| P4 family phage/plasmid primase [Desulfotomaculum acetoxidans DSM
           771]
 gi|257780515|gb|ACV64409.1| phage/plasmid primase, P4 family [Desulfotomaculum acetoxidans DSM
           771]
          Length = 798

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 95/475 (20%), Positives = 170/475 (35%), Gaps = 30/475 (6%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
             +D  N             Y      W         IW+    +I  +     +  K  
Sbjct: 303 NLTDLGNTRRLVTQHGQTIRYCH---IW-----KKWLIWNGKFWEIDNTGAVVRL-AKNT 353

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
           V  +  E    +          +           S+ K+     E+     I+ D LD++
Sbjct: 354 VMSIYAEASKESDEGLRKALVDHARKSEAA----SRIKAMITLAESEEGIPISPDQLDNN 409

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMD 484
              L   +G +DL+TG+ +   ++ YITK     +        +   ++   E  + ++ 
Sbjct: 410 RWLLNCLNGTVDLKTGKLLPHRRDDYITKIAPVEYRPDVECPIWHTFLNEIMEDNQNLVS 469

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
           +  R  GM L G         + G G +GKSTL+N++     +  +       + ++   
Sbjct: 470 FLQRAAGMCLTGDVSEHVLFVLHGNGRNGKSTLLNIMLDIMNDYSIQAPPDLLMAKHNE- 528

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
              +    L  L G R+V+  E++E   +  + IKQ+TGGD + AR      + E   S 
Sbjct: 529 ---RHPTELADLFGKRLVVSIESDEGRRMAESLIKQLTGGDKIKARRM-REDFWEFWPSH 584

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
             ++  N    VR  D A W R  +IPF+   A R+                KW ++G  
Sbjct: 585 KLWLATNHKPQVRGTDTAIWSRLKLIPFNVSFAGRENKQLPAKLLTEKPGIFKWLVEGCL 644

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
           A+  +GL V  P+    A E  R   DT   ++ + C     +   +  + ++Y  + E 
Sbjct: 645 AWQREGLGV--PDEVQAATEIYRTEQDTLGNFLTEHCITNPLVRVPASDIYRAYKAWCEN 702

Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
              Y    +S +     L ++GF       K         +  G+ L       +
Sbjct: 703 NNEY---VLSQKIFGTRLSERGFN------KSRGTKTGGYVWYGIGLLNDLNDTE 748


>gi|283783337|ref|YP_003374091.1| nucleoside triphosphatase, D5 family [Gardnerella vaginalis 409-05]
 gi|283441568|gb|ADB14034.1| nucleoside triphosphatase, D5 family [Gardnerella vaginalis 409-05]
          Length = 774

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 126/800 (15%), Positives = 244/800 (30%), Gaps = 67/800 (8%)

Query: 6   WKEQAKQAIHNG-FKLIPLRLGDKRPQRLGKWEEQLLSSEKID-KLPACGFGFVCGVGEQ 63
           WK + ++   NG     P      +        +     + +  K    G G        
Sbjct: 19  WKYEQQE---NGRLTKPPYNPITGKKAATDNLSDFTSLDDAMKVKDQYDGIGI---KLVD 72

Query: 64  PLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
            L   D+D    +    +  K+         I     K    I    N    KK    + 
Sbjct: 73  NLLGIDLDHCIDNGIIKDWAKEIIAHFKHAYIEYSPSKHGFHILLLFNGAYDKKSYYIKH 132

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
             G +++               T +  T T   ++    +     E  +  L  + +   
Sbjct: 133 --GDIEVY----------SALATNRYLTVTGDVYQE--GELLEDDEAIMWLLDTYMKRNI 178

Query: 182 VPLVKDK----KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH 237
               K+     +S +   +            + TA        + + S  +   V +   
Sbjct: 179 NTHEKENNACTRSYLSDTSVIEKAGNAINGAKFTALWHGDISAYPSHSEADAALVSILAF 238

Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE----------IGDTAKKRSTF 287
           +      +   + R+ +     +DE      +     ++              A     F
Sbjct: 239 YCGGNKEQIDRLFRKSALFRPKWDEHRGADTYGNTTIQKAVSKCHTFYEPFHNASAEEDF 298

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
             L     +L P   +  R  D  N  +F+   +    Y  + K W+        I+   
Sbjct: 299 DDLLSKLQELKPDENIRYRNGDLGNGRLFADIFQNILHYVPERKMWF--------IFDGV 350

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
                   +  +   K+    L                    +            K    
Sbjct: 351 RWTCDIGTLKTMELCKDLALSLIRYAGVIKDERTRSMLVEYWNKWSSRRNREIYIK---- 406

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
             EA S++ I+ +  D +      Q+G LDL+ G   K      ITK +   +     S+
Sbjct: 407 --EAQSVYPISMEAFDKNIYLFNCQNGTLDLQHGVFRKHLATDLITKVSPVFYDPKARSE 464

Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAF 525
            F   V        E   Y  + +G AL G  + +    + G    +GK TLM  +    
Sbjct: 465 RFRQFVDEIMSGDCEKALYLQKSLGYALSGDTRYECMFFLFGESTRNGKGTLMESVLSVM 524

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
           G+       A  I   + P + +    + RL G R   ISE +    +N+A++K MTG D
Sbjct: 525 GDYGKA-VRAETIALKKNPNSSQPTEDVARLAGVRFANISEPSRGLFLNSAQVKYMTGSD 583

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASF 643
            + AR  + N++ +    F  ++  N    + +       R  +IPF++      +D + 
Sbjct: 584 TLNARFLHENSF-DFKPQFKLYVNTNYLPVISDMTVFSSDRMQIIPFNRHFEAWEQDKTL 642

Query: 644 AQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
             +   K        W L+G      +G     P   L A       +D    + +D   
Sbjct: 643 KAEFSKKEVQSAILNWLLEGFTHLRDEGFKP--PNSVLDAIFSYAHDSDKMAQFAEDVLV 700

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
             ++    +  +   Y ++      +      +R     L++      + R++ +   + 
Sbjct: 701 KDQSSEIRTAVVYDHYKKWCIDNGCFSEN---SRNFNQELRK---FAEVVRKRPKTGGEK 754

Query: 763 KRIIKGLKLKPAFESVDDNS 782
             ++KG +LK  F      +
Sbjct: 755 TTLLKGYRLKSEFSDFLSGN 774


>gi|88602291|ref|YP_502469.1| Phage/plasmid primase P4-like protein [Methanospirillum hungatei
           JF-1]
 gi|88187753|gb|ABD40750.1| Phage/plasmid primase P4-like protein [Methanospirillum hungatei
           JF-1]
          Length = 723

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 122/781 (15%), Positives = 233/781 (29%), Gaps = 103/781 (13%)

Query: 13  AIHNGFKLIPLRLGDKRPQRLGKWEE---QLLSSEKIDKLPAC--GFGFVCGVGEQPLYA 67
           A+ +  ++IP++ G K+P    KW+      L    I         +G +    +  L  
Sbjct: 23  ALGDNIRVIPVKPGIKKPIG-DKWQNENNHPLDYRGIHYWFKNGNNYGII---PQGDLVI 78

Query: 68  FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK----------K 117
            D D  +        +  + +  +  VR        I F   + G KK            
Sbjct: 79  LDADEPE-----KLGEVIDYIGDSLTVRTP-SGGYHIYFYCAELGTKKIILYEFEENHDG 132

Query: 118 TTESTQGHLDIL--GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
             +      +I   GC  + V           Y         ++ D       D + + +
Sbjct: 133 KRKKGLHLAEIYMAGCRGFVVGAGSRTDKG-VYRVVNASAPRRLPDPG-----DFKRIIR 186

Query: 176 FFQEITVPLVKDKKSIIPSKTWT--NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
            F++         K     +        N  Y + E    L                   
Sbjct: 187 PFRDDIKYDDGSHKQNQKERDSIPKLYKNEVYQDGERNNALISLAGRLVGTG-------- 238

Query: 234 MAVHHETRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
                 T  S   + ++   + +   T DE +      +    E                
Sbjct: 239 -----ITDESELFRMLSDANNNRCIPTLDEADVQRIARSALRYEPNQRRP---------- 283

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
                          +D  N   F         +     AW        +IW   L +  
Sbjct: 284 --------------LTDLGNGERFFDMHGETTKFIP---AW-----QKWFIWDGHLWRED 321

Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
                      + V  L  E     ++    +            +  +   S A      
Sbjct: 322 R-KQEIRKLANKTVRSLYVEASKIEEDDLRKKLVSWARASESASKIQALLTSAAA----- 375

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
            + +   +  D+       ++G  +L + +     +   +TK     +        +   
Sbjct: 376 -LVADVPESFDNKPDLFNLKNGTYNLHSHEFRDHLQADMLTKCGNFSYEPNASCPVWEKH 434

Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           +   F   + ++  F    G + L GN  + F+   G G +GK   ++L+K+  G+    
Sbjct: 435 IQTIFLNDQSLIGSFQELCGYSFLSGNPDEIFVICHGSGRNGKGKTLDLLKHLHGDYAKT 494

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
               + +  +        +P L RL  SR+VI SET     ++ + IK+++G D ++AR 
Sbjct: 495 ADFKTFLTPSYTNSGSNPSPDLARLYRSRLVIASETGNGSVLDESIIKRLSGNDTISARF 554

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ-KLETK 650
                  E    F  F+  N      + D A   R  ++PF+     +D           
Sbjct: 555 L-RQEIFEYTPEFVIFLQMNPIPRFNDWDKAIENRLWLVPFNHYFEPKDRDPDILDKFKA 613

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
            +     W ++G+K Y + G  +        A E  R+  D+   +I+DCC +  +    
Sbjct: 614 ESAGIFCWCMEGLKRYQALG-RLTRAAAIETACESVRKENDSISCFIEDCCTL--SGKIS 670

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
              L   Y+ +       D      R  T  L +K         K   +    R ++G+ 
Sbjct: 671 RKDLYNHYAVWC---GGVDMCPEVPRKFTSALLKK------HGVKDGVKSNGVRYLQGIS 721

Query: 771 L 771
           +
Sbjct: 722 I 722


>gi|291336267|gb|ADD95832.1| predicted ATPase [uncultured organism MedDCM-OCT-S09-C213]
          Length = 890

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 114/644 (17%), Positives = 231/644 (35%), Gaps = 54/644 (8%)

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQY-TNREITAFLSCFGEEFYNGSHDEWIPVV 233
           K  +      ++  + I P +T     +  +  N ++   L+           +EWI V 
Sbjct: 255 KRLKPSLPAPMEVNRRIKPKRTREERQDLDFHNNIDMVKRLTAMLSRKRAEDRNEWIRVG 314

Query: 234 MAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWD-------TFDFEEIGDTAKKRS 285
             +++   G  + ++I   +S+Q    +DE     +W+       +        +    +
Sbjct: 315 WILYNIGNGCDEARDIWLDFSRQCDDKFDETECITQWNRMVKKDYSIGSLRHFASVDNPT 374

Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV-YIW 344
            +  L   + K   +  L    +D   +A++ +Y       +   K WY+   +    I 
Sbjct: 375 AYDKLRDENVKKYIQQSLGGSHND-IARALYELYGTEFICASIRHKLWYQYQNHRWREIE 433

Query: 345 SLTLDK--ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
                K  I+ SI+    S+ +D FD     +D  + +              +++     
Sbjct: 434 EGIYLKKRISTSILQKYSSLSKDYFDKLANAQDQGEQAMYKERIKQLMKLVNSLKSAPFK 493

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
            +  +           +  L+ +   +G Q+G+ D       + + + YI+      +  
Sbjct: 494 NNVMRECMEVFYDGSFTKKLNKNPYLVGFQNGVYDTRIHAFREGSPDDYISLQMAIEYKR 553

Query: 463 GE----PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
                   Q+  D +S  F  + V DYF        +GGN+++      G G + KS   
Sbjct: 554 FNETALEVQQVNDFLSKVFPDKSVRDYFLDTSSDVFVGGNQSKIVQVWSGEGDNAKSVTQ 613

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAK 577
            L +   G+  V     S I+  R  ++  A P L+R   G R  ++ E ++ D IN   
Sbjct: 614 TLFEKMLGDYSV-KLPTSLIIGKR-TQSSAACPELVRAGNGVRFAVLQEPDQKDVINIGI 671

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           +K+++G D   AR  +     E    F   ++ N+   +   D A W R  ++PF+    
Sbjct: 672 LKELSGNDTFFARGLFKEG-GEITPMFKLILICNEPPQLPYGDKAVWNRIRLLPFEATFC 730

Query: 638 N----------------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
           +                +D  FA K+     +EA  + L   +  + + +D   P     
Sbjct: 731 DDAPDTFEEQLLQKRFPKDRQFADKI--PGMIEAFAYMLLEHRKIVKQRID---PPKVKM 785

Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
           A E  R+  D Y+ +I++C             L  ++ E+ ++ L   +  +    +T  
Sbjct: 786 ATEGYRKKNDIYRQFIEECIIDDAKAKISLLELYTAFKEWFKESLPNHQIPVKNDVLTY- 844

Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
                        K   E        G +++   + VD  + I+
Sbjct: 845 -----------FTKSWGEPGRGVRWMGKRMRKLQDDVDSGNAIV 877


>gi|239638085|ref|ZP_04679044.1| phage primase [Staphylococcus warneri L37603]
 gi|239596368|gb|EEQ78906.1| phage primase [Staphylococcus warneri L37603]
          Length = 769

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 138/798 (17%), Positives = 259/798 (32%), Gaps = 89/798 (11%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFVC---- 58
           W     +  +     IP         +      W     +          G GF      
Sbjct: 19  WCVWKFEKRNGKRTKIPFNAETGEFAKSNDKSTWSSYETAVNA---EGVDGIGFFFEPPY 75

Query: 59  -GVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
            G+    +       K     +     F     +          + I  +       K  
Sbjct: 76  LGIDIDDIDDDLHRFKQGDKLDNIVSEFNEAFKSYTEVSPSGNGLHIIVK------GKIP 129

Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
            +   +G++++   G++F       KT  +Y            D   +SE+  + +++ +
Sbjct: 130 GSRRRKGNIEMYDSGRFFTMTG---KTIGKYK-----------DVTEVSEQVFKTIYEKY 175

Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD----EWIPVV 233
                  VK   +    +   N +     N    +  +   ++   G+++          
Sbjct: 176 LPDN--TVKYPTTNNYQQNIHNLSEIDVINEIYKSKQAKLFDDLMKGNYEPYYTSHSEAD 233

Query: 234 MAVHHE---------------TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD--FEE 276
           MA+ +                 R S+  ++      ++ STY E+      +  +  +  
Sbjct: 234 MALANILAFWCARDYSQMDSIFRQSNLYRDKWDE-KRKNSTYGEQTLFKAINEANNIYTP 292

Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK 336
              T      +        +   K      + D  N   F       + Y+     +Y  
Sbjct: 293 KQQTEDNPLRYALSKLFDKQEETKEFPIRSYDDTGNADRFIDRYGNLYKYSYIANKFYIY 352

Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396
           D     I          SI   +  M E + D      D+    ++  F+     + +  
Sbjct: 353 DGMKWKIDD------KGSIRKLIDEMIESIKDEKIIHGDDVTEEEAREFFQKYYKKTRGT 406

Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
           +      +             T D  D     +   +G +DL + +  K       ++ T
Sbjct: 407 QAKKNIMNELMHRRPA-----TPDDFDRDDMLINVANGYIDLTSRELYKHDINKMFSQIT 461

Query: 457 GTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
            T + E      +LD ++  F   +EV+ Y  + +G +L G  + Q    + G G +GKS
Sbjct: 462 NTDYTEKMQPAVWLDFLNDIFAGDQEVIRYIQKALGYSLTGSTREQIMFILFGKGRNGKS 521

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
             + +I    G+        S +++         N  + RL  +R V  SE NE    + 
Sbjct: 522 IFVEVISEILGDYSNNMQAKSLMVKKN----DNVNTDIARLSKARFVTSSEPNEGFRFDE 577

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
             IKQ+TGGD +TAR  Y   + E    F  ++  N    +R  DD  WRR ++IPFD  
Sbjct: 578 GLIKQLTGGDKVTARFLYAEEF-EYTPKFKIWVSTNHKPIIRGTDDGIWRRLVLIPFDVQ 636

Query: 636 IANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
           I     D     KL          W  +G   ++ +GL   +PE   +A +  R   D  
Sbjct: 637 IPEEKVDKDLKYKLLR-EAPAILNWMAEGAYMWMQEGL--AMPEKLKEASKAYRNEMDVI 693

Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
           + +I+D C   +    ++H L + Y ++      Y    +S +     +K+K        
Sbjct: 694 EQFIEDECKRVDGGKVKAHELYELYKKWANDNGAYK---MSNKDFGQKMKEK-------- 742

Query: 754 EKIEKEWKSKRIIKGLKL 771
               K   S     GL++
Sbjct: 743 -FEYKRITSGMFYFGLEI 759


>gi|283853499|ref|ZP_06370741.1| phage/plasmid primase, P4 family [Desulfovibrio sp. FW1012B]
 gi|283571124|gb|EFC19142.1| phage/plasmid primase, P4 family [Desulfovibrio sp. FW1012B]
          Length = 830

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 123/787 (15%), Positives = 241/787 (30%), Gaps = 98/787 (12%)

Query: 39  QLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDT------FEILHGTP 92
           Q    E   +        +CG         +ID ++       ++         IL G P
Sbjct: 69  QKTKPEPGKRGTGANTAAICG------VWIEIDCQEGVHKEKTENLPTKEQALGILKGLP 122

Query: 93  IVRI---GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAY-----NIHPKT 144
           ++              + ++   +    T +  Q   D++   Q  VA+          T
Sbjct: 123 VIPTVIMDSGGGYHAHWWLDAPLV--FTTDDERQHGQDLVRRFQQAVAHVFHQQGFKVDT 180

Query: 145 KKEY-----------TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIP 193
             +              +  P    V+         V+YL       T P+      +  
Sbjct: 181 TSDLARVLRPPHTFNHKSGQPVMVTVDHYDASLRYRVDYLDACCPPATPPIPTSVLPMPT 240

Query: 194 SKTWTNNNNRQYTNREITAFLSCFGEE-FYNGSHDE--------WIPVVMAVHHETRGSS 244
           + +   +  ++                 +     D+        W   +  V     G  
Sbjct: 241 TPSAGPSGGQELVQYPPVELQPIIDGCAWLRHCRDDAATLPEPEWFAALSIVVRCVNGEQ 300

Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG--------- 295
           +   +    S     Y     + K            A  + +  +  Y            
Sbjct: 301 QAHAL----SSSYPGYSAVETDGKIRHAQAGGPRTCANIQGSLNAAAYCATCPHLSNGSS 356

Query: 296 -------KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348
                  K           +DA N  +F+        Y    + W+  D           
Sbjct: 357 PITLGFLKTSIAQGAGFNMTDAGNMDIFAKANAADTRYVWVWQLWFLFDDVRWQE----- 411

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
                 + +        + DL+++ +       +     +T              +    
Sbjct: 412 ----DKVGSIYQKAIATLRDLADQAKQLLPPKTAGYIIEHTLSSESRASLG----NMLAL 463

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
            ++    +   ++ D+    L   +G +DL+        +E  +TK  G  +        
Sbjct: 464 AKSHPALAAVPEMFDADPWLLNLPNGTMDLKQQTFRSHAREDMLTKVAGVAYDPTSTCPL 523

Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           +L  +      ++ ++ +  R  G  L+G    Q  I + G G +GKS  + ++++  G 
Sbjct: 524 WLAFLVTIMAGNQALIGFLQRFAGYTLVGEVSEQSLILLYGTGANGKSVFLEILRFVLGE 583

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
             +     +                + RL+G+R V   E+     +  A IKQ+TGG+ +
Sbjct: 584 YAMQADFTTFTATK----GQNVRNDIARLVGARFVTAVESEYGTPLAEAVIKQVTGGEPI 639

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQ 645
            AR  +   + +    FT ++  N    ++  D   WRR  ++PF   I    +D+    
Sbjct: 640 VARFLFKE-FFQFYPQFTLWLASNHKPIIKGGDHGIWRRIKLVPFAVTIPPEQQDSDLPS 698

Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
           KL          W L+G + +  +GL+   P   + A  E R   D    ++D+ C +G 
Sbjct: 699 KL-KAEAPGILNWMLEGSREWQRQGLNP--PAEVMAAVSEYRGEMDLLAEFLDEKCVLGL 755

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
               ++  L K+Y E+ E E  +    +  +     L Q+GF          K      I
Sbjct: 756 GEKVKAKDLYKAYREFCEAEGEF---VLGKKRFADLLLQRGF---------RKAKIGDMI 803

Query: 766 IKGLKLK 772
             GL LK
Sbjct: 804 WSGLGLK 810


>gi|120599012|ref|YP_963586.1| P4 family phage/plasmid primase [Shewanella sp. W3-18-1]
 gi|120559105|gb|ABM25032.1| phage / plasmid primase, P4 family [Shewanella sp. W3-18-1]
          Length = 906

 Score =  353 bits (904), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 108/484 (22%), Positives = 195/484 (40%), Gaps = 25/484 (5%)

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
                   +D  N    +    G  +Y  +    Y  D+            +   I   +
Sbjct: 422 DAFDEDTLNDVGNADRLAEVADGKLVYVPELNCLYMFDEQCWRPIGDKELALARCIGEGI 481

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
           ++    + +     +D  K  ++ +              N K  +    +   S   I++
Sbjct: 482 IAQANRMLEDPATLKDKTKRQQADKLLAFGRQSL-----NRKKLADMLEIFKSSNL-ISA 535

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478
              D+    +G  +G+LDL TG+ +   KE+YI++ +   +        +L  +      
Sbjct: 536 KAFDADKMLMGINNGVLDLATGKLLAANKEMYISRYSDINYKPDVTCPRWLQFIDEITCG 595

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             E   +  R VG  L G    Q    + G G +GKST MN+I+   G+ Y   +    +
Sbjct: 596 DVEYAKFLQRMVGYILTGRTDEQVLFFLYGHGCNGKSTFMNIIQRLMGSYYHQISSDVLL 655

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
             N        NPSL +L GSR+V+ +E  E   ++   +K MTG D + AR  Y     
Sbjct: 656 QSNN--SGKGPNPSLAKLNGSRLVVANELPEGSRMDENLVKSMTGSDVIVARQLYAKVEL 713

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
           E    F   +V N    +R+     WRR I++PF+   + +  D     KL         
Sbjct: 714 EYIPMFKLIMVGNHKPVIRDTSLGMWRRMILLPFNASFSQQQMDPQLMDKLY-AELSGIL 772

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
            W L+GV+ ++  G+   IP        E R  +D    ++++C + G+  +  +  L  
Sbjct: 773 NWALEGVQMWLKDGIKASIPNSIKSGIAEYRHESDLLAMFLEECTNKGD--FVYTDELYD 830

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
           ++ ++ E++ ++    ++   +T  L +KGF  G           SK +IKG+KLK AF+
Sbjct: 831 AFRKWAERDGDWK---MTRNIMTKRLVEKGFEKG--------RHNSKAMIKGIKLKSAFD 879

Query: 777 SVDD 780
            + +
Sbjct: 880 DIPE 883


>gi|314933979|ref|ZP_07841344.1| putative nucleoside triphosphatase, D5 family [Staphylococcus
           caprae C87]
 gi|313654129|gb|EFS17886.1| putative nucleoside triphosphatase, D5 family [Staphylococcus
           caprae C87]
          Length = 769

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 133/785 (16%), Positives = 254/785 (32%), Gaps = 89/785 (11%)

Query: 19  KLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFVC-----GVGEQPLYAFDI 70
             IP         +      W     +          G GF       G+    +     
Sbjct: 32  TKIPFNAATGEFAKSNDKSTWSSYETAVNA---EGVDGIGFFFEPPYLGIDIDDIDDDLH 88

Query: 71  DSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILG 130
             K     +     F     +          + I  +       K   +   +G++++  
Sbjct: 89  RFKQGDKLDNIVSEFNEAFKSYTEVSPSGNGLHIIVK------GKIPGSRRRKGNIEMYD 142

Query: 131 CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT--VPLVKDK 188
            G++F                   +  K +D   +SE+  + +++ +           + 
Sbjct: 143 SGRFFTMTG--------------KNIGKYKDVTEVSEQVFKTIYEKYLPDNTVKYPTTNN 188

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE--------- 239
                      +   +  N +         +  Y   +       MA+ +          
Sbjct: 189 YQENIHNLSEIDVINEIYNSKQAKLFDDLMKGNYEPYYTSHSEADMALANILAFWCAKDY 248

Query: 240 ------TRGSSKGKEIARRWSKQGSTYDEENFNYKWDT----FDFEEIGDTAKKRSTFTS 289
                  R S+  ++      ++ STY E+      +     +  ++  D    R   + 
Sbjct: 249 SQMDSIFRQSNLYRDKWDE-KRKNSTYGEQTLFKAINEANNIYTPKQQTDDNPLRYALSK 307

Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349
           LF +  +   K      + D  N   F       + Y+     +Y  D     +      
Sbjct: 308 LFDNQEET--KEYPIRSYDDTGNADRFIDRYGNLYKYSYIANKFYIYDGMKWKVDD---- 361

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
               SI   +  M E + +      ++    ++  F+     + +  +      +     
Sbjct: 362 --KGSIRKLIDEMIESIKNEKVLHSEDVTEEEAREFFQKYYKKTRGTQAKKNIMNELMHR 419

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
                   T D  D     L   +G +DL + +  K       ++ T T + E      +
Sbjct: 420 RPA-----TPDEFDKDDMLLNVANGYIDLTSRELYKHDINKMFSQITNTDYTEKMQPAVW 474

Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
           LD ++  F   + V+ Y  + +G +L G  + Q    + G G +GKS  + +I    G+ 
Sbjct: 475 LDFLNDIFAGDKAVIRYIQKALGYSLTGSTREQIMFILFGKGRNGKSIFVEVISEILGDY 534

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                  S +++         N  + RL  +R V  SE NE    +   IKQ+TGGD  T
Sbjct: 535 SNNMQAKSLMVKKN----DNVNTDIARLSKARFVTSSEPNEGFRFDEGLIKQLTGGDKAT 590

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQK 646
           AR  Y   + E    F  ++  N    +R  DD  WRR ++IPFD  I     D     K
Sbjct: 591 ARFLYAEEF-EYTPKFKIWVSTNHKPIIRGTDDGIWRRLVLIPFDVQIPEEKVDKDLKYK 649

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           L          W  +G   ++ +GL   +PE   +A +  R   D  + +I+D C   ++
Sbjct: 650 LLR-EAPAILNWMAEGAYMWMQEGL--AMPEKLKEASKAYRNEMDVIEQFIEDECKRVDD 706

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
              ++H L + Y ++ +   NY    +S +     +K+K            K   S    
Sbjct: 707 GKVKAHELYELYKKWADDNGNYK---MSNKDFGKKMKEK---------FEYKRITSGMFY 754

Query: 767 KGLKL 771
            GL++
Sbjct: 755 FGLEI 759


>gi|160898867|ref|YP_001564449.1| P4 family phage/plasmid primase [Delftia acidovorans SPH-1]
 gi|160364451|gb|ABX36064.1| phage/plasmid primase, P4 family [Delftia acidovorans SPH-1]
          Length = 857

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 150/850 (17%), Positives = 266/850 (31%), Gaps = 121/850 (14%)

Query: 12  QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID 71
               NG    P        + L +      +   + +    G GF   +    + A D D
Sbjct: 36  PFYANGA---PRNGEQGTAEDLAQLTTFDAAVHAVRERGYTGLGFA-PIANGGIVALDFD 91

Query: 72  SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH------ 125
                   T      ++  T          +   +       K         G       
Sbjct: 92  GCVSGGQITDARIEALISDTYAEFSPSGTGLRAFYLGAMASRKDNAHKSKRVGGQAGAAR 151

Query: 126 ------LDILGCGQYFVAYN-IHPKTK--------------------KEYTWTTPPHRFK 158
                 ++  G   +        P T+                    + +  T P     
Sbjct: 152 LDGLFDIEFFGHNGFVTVTGKATPDTQLWGLQDTVAPLSQGVQQLYAQRFGDTGPLPAVG 211

Query: 159 VEDT----------PLLSEEDVEYLFKFFQEITVPLVKDKKSIIP---------SKTWTN 199
                         P      ++   ++  +    + + +              S+   +
Sbjct: 212 AVALAGEANLAALGPEKLGWTMDQAREYLFDCKASVSRAEWLNALMALHHEFDGSEDALD 271

Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHD------------EWIPVVMAVHHETRGSSKGK 247
             +      +  A        + +   D             W    MA  ++ R      
Sbjct: 272 LADEWSATGDSYAGRKDVEGRWDSFGRDRGGAPITGRWLLSWRRDQMAASNDERMRGALA 331

Query: 248 EIAR-----------------RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
           E+ R                   S+    +               +    A  ++ F  L
Sbjct: 332 EMQRLLKEAPDMLTLQTRVMPDVSRLLLEFPILEIEAYSLVAGRAKEFGLAINKTEFKKL 391

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
                +  P     +  ++  N            ++  DT  WY        +W+    +
Sbjct: 392 IK--VERPPAAAAVAPLTEFGNTERMLARYGDSLMFCPDTATWY--------VWTGVYWR 441

Query: 351 ITASIMNFLVSM-KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
                   +    KE + DL  E   +    +   F F +  +R  +       +  +  
Sbjct: 442 TAMGGNTEVAHYAKETIKDLPSEAASHADPGEF--FAFCSLSQRAAM-----VAAMVKLA 494

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
           E+     + S  LD     LG ++G++DL TG  +  + EL IT S G  +  G     F
Sbjct: 495 ESDPRVCVPSSELDKHRHLLGVKNGVVDLRTGVLMPASPELRITLSAGCEYNPGAKCPLF 554

Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
              +   F +  E+++Y  R  G AL G  +        G G +GKST+ N ++  FG  
Sbjct: 555 EQTLRDVFFDDLEMVEYVARTFGYALQGQPREDMMFIAFGNGANGKSTIFNAVRKVFGGY 614

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                 AS I       AG     L+RL G+R V ++E +E  E+    +K MTGGD +T
Sbjct: 615 ARSADAASFISDAMGGNAGGPREDLLRLRGARFVYVNEPDEGGELREGAVKAMTGGDAIT 674

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-----RDASF 643
           AR        E   ++T ++  N    ++  D+  WRR  ++PF++   N     +D   
Sbjct: 675 ARGIQAKHSIEIEPTWTVYMPTNHKPIIKGTDNGIWRRMGLLPFERDFRNDPHIVKDDQR 734

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
            +KLE           ++    Y   GL+   P   L A  + R+  D    WI++CC+I
Sbjct: 735 REKLE-AELPGILALIVRAGMRYRQSGLNP--PAKVLAASADYRKDMDLLGEWIEECCEI 791

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
            ENL  +   L +S+  Y  +     R   S++ +   L          R   +K  K  
Sbjct: 792 DENLHTKVSDLWESWETYARRRG-LVRFISSSKALGRRLDS--------RFPSDKGSKGV 842

Query: 764 RIIKGLKLKP 773
           RI +G+ L+ 
Sbjct: 843 RIRRGIGLRD 852


>gi|169347120|ref|ZP_02866062.1| D5 N like family [Clostridium perfringens C str. JGS1495]
 gi|169296803|gb|EDS78932.1| D5 N like family [Clostridium perfringens C str. JGS1495]
          Length = 756

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 124/777 (15%), Positives = 242/777 (31%), Gaps = 65/777 (8%)

Query: 19  KLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA--CGFGFVCGVGEQPLYAFDID--SKD 74
           + +P     K+   +    +  LS E +        G G      ++ L A DID    D
Sbjct: 24  RKVPYNPITKKAVSVKNPSDF-LSYEIVLPFRKNYDGLGVRV---DKNLVAIDIDNCVVD 79

Query: 75  EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG-HLDILGCG- 132
            K     +D          +      K L  F +  +  +   T    +G ++++   G 
Sbjct: 80  GKLTTLGQDIV-NHFPNSYIEYSPSGKGLRLFCLMNDSFQYDTTQYKMKGKNVEVYVGGY 138

Query: 133 --QYFVAY------NIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
             ++                    TW    H  + + T    +      +     +    
Sbjct: 139 TNRFVTVTENIYQEGDINVCTDALTWLLTTHLKREKRTSKTIQAQS---YLSDASVIQKA 195

Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244
              K +      W+ + +   ++ E    L      +  G  ++       +    R SS
Sbjct: 196 SSAKNADKFKSLWSGDISNCSSHSEADLALCSILAFYCGGDKNQ-------IDRLFRNSS 248

Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304
             +E          TY         ++               F              L  
Sbjct: 249 LFREKWDEI-HGNDTYGNLTIEKAVNSLTSV---YKPINLDEFNDELTRLKHDFNFPLGN 304

Query: 305 -SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
              ++D     +F+ + +    Y  + K+W+             + +     +  + S+ 
Sbjct: 305 MYAWNDIGAGKLFADFYQEILRYVPERKSWFIYQDG--------IWQKDTGNIVAMKSVM 356

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           E    +     D     K   F   +   + +    S  K      +A     I     D
Sbjct: 357 ELANLIYLCAIDITDEDKRKTFQRFSSKWQSHSYRVSILK------DAQVYHPIKVSDFD 410

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
                L   +G   L+         +  +TK     +     S  F   +        E 
Sbjct: 411 KDIYMLNCLNGTYHLKNKCFYPHQSKDLLTKKANVSYEPQAKSHRFNSFIDEIMTGDNEK 470

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
             +  + +G  L G  + +    + G    +GK TL   I    G         +  ++ 
Sbjct: 471 SSFLQKILGYGLSGDTRHECLFILYGVTTRNGKGTLCETILNLLGTYACTARSETIALK- 529

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
               +   +  + RL G R V ISE  +   +N A++K MTG D + AR  + N++ +  
Sbjct: 530 -QNNSQGPSEDVARLAGVRFVNISEPQKGLVLNVAQVKSMTGNDTLNARFLHENSF-DFK 587

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLE-TKYTLEAKKW 658
             F  +I  N    V +       R  +IPFDK      RD +  Q+            W
Sbjct: 588 PQFKLYINTNYLPSVTDLTIFKSDRIWIIPFDKHFNEEMRDITLKQQFTSEPVKSAILNW 647

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
            ++G  A   +GL   +P+V  +A  +     D  + +I+DC ++G    E++  +   Y
Sbjct: 648 LIQGYDALQREGL--SVPKVVKEATHQYEHDNDKIKLFIEDCLELG-GFEEKTSDIYYRY 704

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
            ++  +   +     S +    +L  +     I R++ +       ++ G +L   F
Sbjct: 705 KQWCLENGQFAE---SMKNFKQSLSSQ---FSIVRKRPKGGGNKTTLLVGARLVSDF 755


>gi|120601927|ref|YP_966327.1| hypothetical protein Dvul_0879 [Desulfovibrio vulgaris DP4]
 gi|120562156|gb|ABM27900.1| plasmid/phage primase, P4 family [Desulfovibrio vulgaris DP4]
          Length = 738

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 113/475 (23%), Positives = 186/475 (39%), Gaps = 43/475 (9%)

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
           A   ++      F+   K    Y  +T AWY        IW  T  ++  + + F     
Sbjct: 300 AYPATEDSIALAFANRYKDDLRYCHETGAWY--------IWRGTHWEMERTRLAF----- 346

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           + V +L  E     ++ K              + + +   S  +  ++   F++TS + D
Sbjct: 347 DMVRNLCRETAAALESKKLA----------STLSKAATVGSVERLAQSDRHFAVTSGIWD 396

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESEEV 482
           +    LG  DG++DL +G  +   +E +ITK+T         +  +   +         +
Sbjct: 397 ADHYLLGTPDGVVDLRSGVLLPARREDFITKTTTVAPAASSEAPLWSRFLHEATQGDVAL 456

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
             +  +  G AL G         I G GG+GKS  +N I    G      A  + +    
Sbjct: 457 QRFMRQIAGYALTGDISEHALFFIYGPGGNGKSVFLNTINNILGAYTATAAMDTFVASK- 515

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                +    L  L G+R+V +SET E      ++IKQ+TGGD +TAR      +     
Sbjct: 516 ---GDRHPTDLAMLRGARLVSVSETEEGRAWAESRIKQLTGGDQVTARFM-RQDFFTFTP 571

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
            F   IV N    ++N DDA  RR+ +IPF    A  D    +KL         +W ++G
Sbjct: 572 QFKLLIVGNHKPVLKNVDDAARRRFNIIPFVHKPATPDKQLEEKL-RAEYPAILRWMIEG 630

Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
              +   GL    PE   +A        D +  WI++CC++G    E + +L  S+  Y 
Sbjct: 631 CLDWQENGL--VRPESVREATASYFDEQDLFGQWIEECCEVGAMYSETTTALFDSWKSYA 688

Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
           E+         S +  + NL ++GF  G           S R   G+K K   + 
Sbjct: 689 ERNGE---HPGSAKAFSANLCKRGFTSG--------RTMSSRYFSGIKKKKEQDW 732


>gi|302344019|ref|YP_003808548.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
 gi|301640632|gb|ADK85954.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
          Length = 749

 Score =  349 bits (896), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 117/585 (20%), Positives = 216/585 (36%), Gaps = 51/585 (8%)

Query: 210 ITAFLSCFGEEFYNGSHDEWIP---VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
           + A  +  G   +   ++ +     VV+   ++T G +  + +A+      ++       
Sbjct: 200 LAAACNPMGAGKWREEYNPYFQGKQVVILPDNDTPGRNHARSVAKALLFVATSVKIVELP 259

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL---------LASRFSDAYNKAMFS 317
                 D  +       R     L      L P                 ++     +F+
Sbjct: 260 GLPPKGDIVDWKKAGHGRDELLGLVEAVEALDPAHPDDSNDACPATPYPATEDAIALLFA 319

Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377
              K    Y  +T AW+        +W+ +  ++  + + F    ++     +   +   
Sbjct: 320 REHKDDLRYCHETGAWF--------VWTGSHWRVEKTRLAF-AWARKLCRKAAAGMDS-- 368

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
                                    +  AQ+  A   F++TS++ D+    LG  DG++D
Sbjct: 369 ---------KKVAATLSKAATAGAVERFAQTDRA---FAVTSEIWDADLHLLGTPDGVVD 416

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESEEVMDYFTRCVGMALLG 496
           L TG      +E Y+TK           +  +   +         +  +  +  G AL G
Sbjct: 417 LRTGTLRPARREDYLTKLAAVAPARSSDAPLWRRFLDEATQGDAMLQRFMQQVAGYALTG 476

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
                    I G GG+GKS  +N +    G+     A  +        +  +    L  L
Sbjct: 477 DISEHALFFIYGPGGNGKSVFLNTLTNILGDYAATAAMDTFTA----SQGDRHPTDLAML 532

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
            G+R+V +SET E      ++IKQ+TGGD ++AR      +      F   IV N    +
Sbjct: 533 RGARLVSVSETEEGRPWAESRIKQLTGGDKISARFM-RQDFFTYTPQFKLLIVGNHKPVL 591

Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
           RN D+A  RR+ +IPF    A+ D     KL         +W ++G   +   GL    P
Sbjct: 592 RNVDEAARRRFNIIPFVHKPASPDKRLEDKL-RAEYPAILRWMIEGCLDWRENGLL--RP 648

Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
           E   +A        D +  WI++CC++G+  WE +  L +S+  Y ++         ST+
Sbjct: 649 ESVKEATAAYFDEQDLFGQWIEECCEVGKASWETTARLFESWKNYADRNGE---HAGSTK 705

Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
             + NL ++ FI     ++      ++RI +G+ +K   +   D 
Sbjct: 706 AFSANLAKREFI----ADRRTVFGSTQRIFRGIAVKVEHDGRLDG 746


>gi|217973530|ref|YP_002358281.1| P4 family phage/plasmid primase [Shewanella baltica OS223]
 gi|217498665|gb|ACK46858.1| phage/plasmid primase, P4 family [Shewanella baltica OS223]
          Length = 900

 Score =  348 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 105/487 (21%), Positives = 193/487 (39%), Gaps = 25/487 (5%)

Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356
            I         +D  N   F++      +Y  +    Y  D       +    ++   + 
Sbjct: 422 SILTEFNEDTLNDVGNADRFNVLFDERVVYVPELNTTYFYDGRKWAPSNGRELELARRVG 481

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
             +++      +   E    NK+              +      K     +  ++G+   
Sbjct: 482 EQIITQA----NWMVEESVKNKDKSMHEEAGQLLKFGRQTLNRKKMADMLEVFKSGN--Q 535

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
           I++   DS    +G  +G+LDL  G+ +   K +YI++ +   +        +L  +   
Sbjct: 536 ISASRFDSDPMKMGISNGVLDLTKGKLLAAKKRMYISRYSDITYDSSATCPRWLQFIDEI 595

Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
               +E   +  R VG  L G    Q    + G G +GKST MN+I+   G+ Y   +  
Sbjct: 596 TCGDKEYAKFLQRIVGYILTGRTDEQVLFFLHGHGCNGKSTFMNVIQRLMGSYYHQISSD 655

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +  N    +   NPSL +L GSR+V+ +E  E   ++   +K MTG D + AR  Y  
Sbjct: 656 VLLQTNN--SSKGPNPSLAKLTGSRLVVANELPEGSRMDENLVKSMTGNDVIVARQLYAK 713

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTL 653
              E    F   +V N    +R+     WRR I++PF+   +    D     KL      
Sbjct: 714 VELEYTPMFKLIMVGNHKPVIRDTSPGMWRRMIMLPFNASFSQEQMDPLLMDKLY-AELS 772

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
               W L+GV+ ++  G+   IP        E R  +D    ++++C   G+  +  +  
Sbjct: 773 GILNWALEGVQMWLKDGIKASIPNSIKSEIAEYRHESDLLAIFLEECTCKGD--FTYTDM 830

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
           L  ++ ++ E++ ++    ++   +T  L +KGF  G           SK +IKG+ LK 
Sbjct: 831 LYDAFRKWAERDGDWK---MTRNIMTKRLVEKGFEKG--------RHNSKAMIKGINLKS 879

Query: 774 AFESVDD 780
            F+ + +
Sbjct: 880 VFDDISE 886


>gi|302343981|ref|YP_003808510.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
 gi|301640594|gb|ADK85916.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
          Length = 744

 Score =  346 bits (887), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 122/581 (20%), Positives = 218/581 (37%), Gaps = 46/581 (7%)

Query: 209 EITAFLSCFGEEFYNGSHDEWIP---VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENF 265
           E+ A  +  G   +   ++ +     VV+   ++T G +  + +A+       +      
Sbjct: 199 ELAATCNPMGAGKWREEYNPYFQGKQVVILPDNDTPGRNHARRVAKALLSVAVSVKIVEL 258

Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR----FSDAYNKAMFSIYKK 321
                  D  +       R     L      L P     S      ++     +F+   K
Sbjct: 259 PGLPPKGDIVDWKKAGHSREELLRLVEAAATLDPAKPDDSNDACPATEDAIALLFAREHK 318

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
               Y  +T AW+        +W+ +  ++  + + F    ++     +   ++      
Sbjct: 319 DDLRYCHETGAWF--------VWTGSHWRVEKTRLAF-AWARQLCRKAAAGMDN------ 363

Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441
                                +  AQ+  A   F++TS++ D+    LG  DG++DL TG
Sbjct: 364 -----KKVAAALSKAATAGAVERFAQTDRA---FAVTSEIWDADLHLLGTPDGVVDLRTG 415

Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKA 500
                 +E YITK           +  +L  +         +  +  +  G AL G    
Sbjct: 416 TLRPARREDYITKLAAVAPARSSDAPLWLRFLDEATQGDAMLQRFMRQVAGYALTGDISE 475

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
                I G GG+GKS  +N +    G+     A  +        +  +    L  L G+R
Sbjct: 476 HALFFIYGPGGNGKSVFLNTLTNILGDYAATAAMDTFTA----SQGDRHPTDLAMLRGAR 531

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
           +V +SET E      ++IKQ+TGGD ++AR      +      F   IV N    +RN D
Sbjct: 532 LVSVSETEEGRPWAESRIKQLTGGDKISARFM-RQDFFTYTPQFKLLIVGNHKPVLRNVD 590

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
           +A  RR+ +IPF    A+ D     KL         +W ++G   +   GL    PE   
Sbjct: 591 EAARRRFNIIPFVHKPASPDKRLEDKL-RSEYPAILRWMIEGCLDWRENGLL--RPESVK 647

Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
           +A        D +  WI++CC+IG   WE +  L +S+  Y ++         ST+  + 
Sbjct: 648 EATAAYFDEQDLFGQWIEECCEIGRASWETTARLFESWKNYADRNGE---HAGSTKAFSA 704

Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
           NL ++ FI     ++      ++RI +G+ +K   +   D 
Sbjct: 705 NLAKREFI----ADRRTVFGSTQRIFRGIAVKVEHDGRLDG 741


>gi|255020312|ref|ZP_05292380.1| hypothetical protein ACA_2130 [Acidithiobacillus caldus ATCC 51756]
 gi|254970232|gb|EET27726.1| hypothetical protein ACA_2130 [Acidithiobacillus caldus ATCC 51756]
          Length = 766

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 117/723 (16%), Positives = 218/723 (30%), Gaps = 73/723 (10%)

Query: 70  IDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDIL 129
            D          +  F  +       +G+  + L   R   E    +    + +    + 
Sbjct: 86  FDLIAAHHGLDAQTDFARVLEVAGQLVGRAAR-LPSKRKKAEPPTDELGPATAKWDY-LD 143

Query: 130 GCGQYFVAYNIHPKTKKEYTWT---------TPPHRFKVEDTPLLSEEDVEYLFK--FFQ 178
             G+       +    +   +           PP    + + P +   D   L +     
Sbjct: 144 ADGRLIAVVYRYDPPGRRKEFRPWDVKRRRMAPPDPRPLYNQPGIKAADQVILVEGEKCS 203

Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW-----IPVV 233
           +  +       + +       +           + L     +     + E      +   
Sbjct: 204 QALIDAGFCATTAMHGANAPVDKTDWSPLAG-KSVLIWPDRDKPGFGYAEAASQAVLMAG 262

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293
            A            E           +D   F         +   + A + +T  +    
Sbjct: 263 AASCAILLPPDDKPEGWDAADAVAEGFDVAGFVVNGPRMTIQPEQEDAPEHTTDAAH--- 319

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
                  G  +   S+      F+   +  + Y A   AW         +W     +   
Sbjct: 320 -------GGASVLGSEDALALSFTRRYQRDWRYVA---AW-----GKWLMWDGQRWR--- 361

Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
                 ++  + +  +         N++          +          +  A++     
Sbjct: 362 --AEETLAATDLIRHVCRHAAVRADNARLA-------TKLAASSTVGGVERLARTDR--- 409

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
             + T D  D+    L  Q G++DL TG+     +   +TK      V G     ++  +
Sbjct: 410 RHAATPDEWDADPWLLNTQGGVVDLRTGRMRPHDRADRMTKIAPATLVPGSACPTWIRFL 469

Query: 474 SGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
                   E+  Y  R VG  L G         + G G +GKS  +N +    G+     
Sbjct: 470 EQVTGGDAELQAYLQRMVGYCLTGSTAEHALFFLYGTGANGKSVFVNTLATILGDYAANA 529

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
              + +         +    L  L G+R+V  +ET +    N AKIK++TGGD +TAR  
Sbjct: 530 PMDTFME----ARGDRHPTDLAGLRGARLVTATETEQGRRWNEAKIKEITGGDRITARFM 585

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
               +      F   I  N    +RN D+A  RR  +IPF   I    RD +  QKL   
Sbjct: 586 -RQDFFTYVPQFKLVIAGNHKPAIRNVDEAMRRRLHLIPFTVTIPPERRDKTLQQKL-LA 643

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
                  W ++G  A+  +GL    P+  L A +E  +  D    W+++ C    N    
Sbjct: 644 ERDGILAWAVQGCLAWQREGLRP--PQSVLDATDEYFEAEDALGRWLEERCVRDPNAKSL 701

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
              L   + ++ E    +     S +  +  L  +G           +     R  +G+ 
Sbjct: 702 VAELFSDWKQWAEAAGEF---VGSQKRFSDLLLTRGLEK-------WRNGMGLRGFRGVG 751

Query: 771 LKP 773
           LK 
Sbjct: 752 LKE 754


>gi|239906140|ref|YP_002952879.1| hypothetical protein DMR_15020 [Desulfovibrio magneticus RS-1]
 gi|239796004|dbj|BAH74993.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 482

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 176/484 (36%), Gaps = 28/484 (5%)

Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349
           L   +     +        D  N  M +   +    Y  D ++W   D  ++    +TL 
Sbjct: 19  LAKMNDASTGQEKTIYSLDDIGNAVMLASIFQNRIRYCEDLRSWLVWDGKHLAKNDVTLW 78

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
           +    I+       +  ++L              ++   +  +       ++ ++     
Sbjct: 79  RHARLIVRIRFHQAKSKYNLVTTNGIVVSKEDVLKWAIKSASK-------ARMQAMLDVA 131

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
                 +     LD        Q+G +DL TG+  K      +T  +   +    P  E+
Sbjct: 132 SILPQMATKLKELDKDEYLFNCQNGTIDLRTGELRKHNLSDMLTHISDVSYRPDAPCPEW 191

Query: 470 LDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
           L  V      +  + +Y    +G  L G    Q    + G G +GKST +N      G  
Sbjct: 192 LKFVEDITLGNWHLQEYLQEVLGYCLCGSVSEQIMFVLVGKGANGKSTFLNAFINVLGTY 251

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                  + +      E+      L RL+G+R V   E N   +++ A +K ++GGD + 
Sbjct: 252 AKTTPAHTFV----KSESRALRNDLARLVGARFVSAVEINSGKKLDEALVKGLSGGDRVA 307

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQK 646
           AR   G  + E       F+  N    V   DD  +RR  VIPFD   A    D     K
Sbjct: 308 ARFI-GKEFFEYTPQAKFFLAVNVFPEVSGADDGIYRRLRVIPFDAAFAPHQMDKDKPAK 366

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           L  K       W ++G K +  +   +  PEV  +A    R+  D  +++IDD C +   
Sbjct: 367 L-KKEAEGILAWAVEGFKRWYERK-SLLEPEVVTEASMAFREQMDAVRSFIDDYCILDPG 424

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
              +  SL  +Y E+ +Q      + +S +    ++ QKGF  G        +    R  
Sbjct: 425 ASVQVGSLYDAYIEWAKQN---ALEPMSKKQFGTHVGQKGFTQG--------KSGKTRSW 473

Query: 767 KGLK 770
           KGLK
Sbjct: 474 KGLK 477


>gi|296447833|ref|ZP_06889745.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
 gi|296254633|gb|EFH01748.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
          Length = 892

 Score =  338 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 125/588 (21%), Positives = 217/588 (36%), Gaps = 62/588 (10%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSK--QGSTYDEENFNYKWDTFDFEEIGDTAK 282
               WI +  A++ E  GS++G+E+   W+   +      E     W  F  +  G +  
Sbjct: 318 ERKPWIKIGAALYVEFGGSAEGEELFEDWTALREEGNVKPEKDAASWRNFRGDRPGGSTG 377

Query: 283 KRSTFTSLFYHHGKLIPK-GLLASRFSDAYNKAMFSIYKKGHF----------------- 324
           K  T   L Y  G      G L   +SD +      +++   F                 
Sbjct: 378 K--TIRDLAYKAGWSPDAAGFLDYEWSDGWTDKPDIVFEDERFKAALAVIPSCRALADEG 435

Query: 325 ----------------------LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
                                 LY   T A   +D+      S  + +       +L + 
Sbjct: 436 DEGDAVAPNAVAELGFSGAGGDLYNGSTFANLYRDRLLFIHESGDVLRFDCEG-GWLAAA 494

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
                  ++      K+  +    +    +  +          A+S E G   S+     
Sbjct: 495 PGTAERAAKAVAGILKDQATEAAHYQHLKKLCDARAQHAMIEMARS-EPGMTRSLAD--F 551

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
           D +   LG  +G+LDL +G+ +  + ++ ++K     F        F+  +      +E+
Sbjct: 552 DDNPMMLGVANGVLDLRSGRLLPMSPDVLVSKRCNVAFDPDAECPSFIRFLVEVQPDDEI 611

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                R VG  L G    Q F    G G +GKS  + L+ +  G+  +       +   R
Sbjct: 612 RACVKRFVGYCLTGDVSEQVFAFFHGGGNNGKSAFIELLAWLLGDYALKIPTEMLMQHQR 671

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
            P+    +P ++ L G R++  +ET E   +  A++K +TGGD +T R  +         
Sbjct: 672 NPQ--GPSPDIVALKGRRLIYANETEEGRRLADARVKDLTGGDTLTGRAPHAMAAICFRP 729

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
           S    IV N    + +     WRR  ++P+ K +    RD    QKL          W L
Sbjct: 730 SHKLVIVGNHKPAISDTSSGMWRRVALVPWTKTVPPEKRDRHLVQKLMR-EGSGVLNWAL 788

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
            G++ +   GL   IP+    A    R+  D    W+DD C+ G  L+E+      SY E
Sbjct: 789 DGLRDWREHGLM--IPDAIKDATASYREDEDILGDWLDDECESGRGLFEKKIHAYASYRE 846

Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK----EWKSKR 764
           + E   N   + ++ +T T  L ++GF  G  R   +     +W+S+R
Sbjct: 847 WAESNGN---RPLANKTFTRRLTERGFPLGRDRRTFQGFALTDWRSRR 891


>gi|325110202|ref|YP_004271270.1| phage/plasmid primase, P4 family [Planctomyces brasiliensis DSM
           5305]
 gi|324970470|gb|ADY61248.1| phage/plasmid primase, P4 family [Planctomyces brasiliensis DSM
           5305]
          Length = 707

 Score =  336 bits (862), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 109/641 (17%), Positives = 205/641 (31%), Gaps = 58/641 (9%)

Query: 141 HPKTKKEYTWTTP---PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTW 197
           +  T +++        P  ++ ++  + S+ D E      ++    L           + 
Sbjct: 113 YHHTGEQWEKKQGNRKPEIYRADE--VASQPDAEVWLCEGEKDADTLSGLGLVATSLPST 170

Query: 198 TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG 257
                      E      C   +      +       A+    +          R+ +  
Sbjct: 171 GTFKREYKPFFEGRKVFICEDHD--KAGRNHGEKCGKALQGVAKSVE-----VIRFPELP 223

Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317
              D  +F     T +         +++    L                F+D  N  +F 
Sbjct: 224 EKGDVTDFIEAGGTVEQLRQRAQPWEQAQEPELPTFA----DSQGGPDHFTDCRNAEVFI 279

Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377
                +  Y    K+W         IW+    +   +  + ++   + V++   E   + 
Sbjct: 280 QQHGENLRYCFPWKSW--------LIWNGQRWEPDRT--SQILRRAKSVYEFWMEQIADM 329

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
               +     +              K  A       +  +T+D L+         +G LD
Sbjct: 330 HPDDAKDAIKHAQKSASTRGMEQFLKQAAA------MVPVTTDDLNRDPWLFNCPNGTLD 383

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLG 496
           L TG+     +   +T    T +    PS  +   +   F    +V+ +  R  G AL+G
Sbjct: 384 LRTGELRPHNRADLLTVICPTAYNPDAPSFTWDGFLESTFADHGDVIPFLQRLFGAALVG 443

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQNRPPEAGKANPSLIR 555
             +        G G +GKSTL+N I    G +  +          ++     +       
Sbjct: 444 IVRDHILPVFWGSGANGKSTLLNAIMAILGGDYALQAVPEMLCDSDQ----DRHPTERAD 499

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L G R V   ET     +  + +K +TGGD + AR  Y + + E   S    +  N    
Sbjct: 500 LYGKRFVAAVETEAGRRLKESFVKALTGGDRIRARHLYQD-FFEFDPSHLIVLCSNHKPK 558

Query: 616 VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
           V   D   WRR  ++PF       + D    +KL+         W ++G   + ++GL  
Sbjct: 559 VIGDDYGIWRRLRLVPFTATFKGSDADPQLPEKLQ-AEAEGVLAWMVRGCLDWQAQGL-- 615

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
           + PE  L+A  E +  +D    +ID CC   + +         ++ E+  +         
Sbjct: 616 NEPETVLQATSEYKNESDVIGGFIDACCYTNDRMQVSFSQFYTAFEEWCNESGE------ 669

Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWK-SKRIIKGLKLKP 773
                  NL  +   G    E+ E+      R  +GL LK 
Sbjct: 670 -------NLPSRTRTGRTLNERFEQVPNVRGRWYRGLGLKE 703


>gi|27383368|ref|NP_774897.1| hypothetical protein bll8257 [Bradyrhizobium japonicum USDA 110]
 gi|27356543|dbj|BAC53522.1| bll8257 [Bradyrhizobium japonicum USDA 110]
          Length = 475

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 92/480 (19%), Positives = 166/480 (34%), Gaps = 40/480 (8%)

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
                 P     +  ++     +F+   +    +   T AW++        W  +  +  
Sbjct: 23  AANDNKPASNPGTSVTEDSVAYIFASTYRDTLRFCHSTGAWFE--------WDGSYWRRN 74

Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
              +         V  ++ +                           S A          
Sbjct: 75  EVGL-----AAHHVRVMARDMSQGLSPKALATIRKR-----------SFASGVEGFARND 118

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
             F++T +  D     LG  DG +DL TG+         ITK T T          +L  
Sbjct: 119 PTFAVTIEAWDRDPFLLGTPDGTVDLRTGKMRAADPADGITKLTSTAPSAQADCPLWLRF 178

Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           +        E++ +  +  G  L G  +    + + G GG+GKS  +N   Y   +    
Sbjct: 179 LQDATGGDGEMIRFLQQWCGYCLTGDTREHALVFVHGDGGNGKSVFLNTTSYILHDYATT 238

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
            +  + +       + +    L  L G+R+V  SET E      ++IKQMTGGD ++AR 
Sbjct: 239 ASMDTFVASR----SDRHPTDLAMLRGARLVSASETEEGRAWAESRIKQMTGGDAISARF 294

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651
                +      F  F+V N    + + D A  RR+ ++PF +     D     KL    
Sbjct: 295 M-RQDFFTFQPQFKLFVVGNHQPALHSVDAAARRRFNIVPFTRKPTKPDRELEAKL-RGE 352

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                +W + G + +   GL    P   ++A E      DT+  W+ D C +  +    S
Sbjct: 353 APAILRWMVDGCRDWQRNGL--VRPASIVEATETYFAEQDTFGQWLKDACRVEPDNRSIS 410

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
             +A  +  + +       +  S +    +L + GF  G       +  +  ++  GL+L
Sbjct: 411 DFVADLFKSWTDYAEASGERPGSQKGFVQSLTKSGFKKG-------QRVRGGQLYIGLQL 463


>gi|23015921|ref|ZP_00055685.1| COG3378: Predicted ATPase [Magnetospirillum magnetotacticum MS-1]
          Length = 796

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 111/741 (14%), Positives = 225/741 (30%), Gaps = 87/741 (11%)

Query: 65  LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP------KILIPF--RMNKEGIKKK 116
           +   D+D  D        D      G   + +          + L  +            
Sbjct: 115 VVLVDLDHGDIAAKR---DHLIRHIGPATMEVASGGVTPEGQRKLHLYWRLTEPAEGDDI 171

Query: 117 KTTESTQGHL--------DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
            T    +  +              Q                         +       E 
Sbjct: 172 TTVCRVRHIIATKVGGDPSFRSAHQPIRVAGTIHAKNGCRRLVEILSTGPI-------ER 224

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228
           D+  L +    +     +          + +    + +  ++ +     G        D 
Sbjct: 225 DLGELVEAVLAMPPLDGE----GSSWLDFNDAGTARGSVTDLFSQQIREGGMDGTTRFDA 280

Query: 229 WIPV-VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD----TFDFEEIGDTAKK 283
              V    +     G     +           Y+E   +  W       + E + +  ++
Sbjct: 281 LSRVMGYWIRRCREGHITPADAWDEIVA----YNEARIDPPWPVDRLQREAERLWERDQR 336

Query: 284 R-STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342
             +              +      F++    A F+      + + A    W +       
Sbjct: 337 HGAAHDGADPADADEDDEDAEPVAFTEDALAAAFTQAHAEDWRFVA---GWGQ-----WL 388

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
           +W+    +  ++++ +     +    +  +                +   R  +   S  
Sbjct: 389 LWTGCRWERESTLLAY-----DMARLICRDAASA----------ARSAKLRSKLSSASTV 433

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
            +  +   A    + T+++ D     L    G++DL +GQ     + L +TK T      
Sbjct: 434 AAVERLARADRSHAATTEVWDRDPWLLNTPGGVVDLHSGQIQPHNRALAMTKITMA--TP 491

Query: 463 GEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
                 +   V+      +++ DY  R  G  L G         + G G +GKS   N +
Sbjct: 492 QGDCPIWRQFVATVTGGDKDLQDYLQRVAGYCLTGVTSEHALFFLYGTGANGKSVFANTL 551

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
               G+   + A    +       + +    +  L G+RIV   ET +      +K+K +
Sbjct: 552 TAILGDYATVAAMDMFMA----TTSERHPTDMAGLRGARIVTSIETEQGRRWAESKLKAL 607

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639
           TGGD +TAR      + E    F   +  N    +RN D+A  RR  ++PF   I    R
Sbjct: 608 TGGDKITARFM-RQDFFEFIPQFKLLVAGNHKPAIRNVDEAMRRRLHMVPFTITIPPAKR 666

Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
           D   + +L          W ++G  A+   GL    P   + A +E  +  D +  W+D+
Sbjct: 667 DKQLSDRL-LAERDGILAWAVEGCLAWQRTGLRP--PAAVMAATDEYFESEDAFGRWLDE 723

Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
            C+ G +  E + +L   +  + E    +     S +    NL  +G          +  
Sbjct: 724 RCERGNSFSETTSALFGDWKNWTEANGEFT---GSIKRFAENLVNRGLE--------QWR 772

Query: 760 WKSKRIIKGLKLKPAFESVDD 780
            K+ R  +G++L    ++ D 
Sbjct: 773 SKTARHFRGVRLCEGADASDG 793


>gi|220920024|ref|YP_002495326.1| phage/plasmid primase, P4 family [Methylobacterium nodulans ORS
           2060]
 gi|219952854|gb|ACL63243.1| phage/plasmid primase, P4 family [Methylobacterium nodulans ORS
           2060]
          Length = 482

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 102/466 (21%), Positives = 170/466 (36%), Gaps = 41/466 (8%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           ++      F+        Y  DT +WY+        W+    +     M F    +E V 
Sbjct: 47  TEDSAACEFAEIHGERLRYCHDTGSWYE--------WTGVAWRQNRVGMAF-QWARELVR 97

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            L          S   R+  +       VE+  +   T         F++T++  D+   
Sbjct: 98  QL------IANESPKARYLASKTSFAAGVEKFCRHDRT---------FAVTAETWDADRW 142

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
            LG   G +DL TG+  +  +   ITK T            +L  ++      E +  + 
Sbjct: 143 LLGTPGGTVDLRTGRLREADQGERITKLTAVAPARLPDCPLWLAFLTQATGGDEGLTRFL 202

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
            +  G AL G       + + G GG+GKS  +N++           A  +          
Sbjct: 203 RQWCGYALTGTVSEHALVFVYGPGGNGKSVFLNVLTGILAEYAKTAAMDTFTASK----G 258

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
            +    +  L G+R+V  SET E      AKIKQ+TGGD +TAR      +     +F  
Sbjct: 259 DRHPTDMAMLRGARLVTASETEEGRPWAEAKIKQLTGGDPVTARFM-RQDFFTFTPTFKL 317

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            IV N    +RN DDA  RR+ ++PF +     D     KL         +W ++G   +
Sbjct: 318 TIVGNHQPLLRNVDDAARRRFNIVPFTRKPERPDPHLEAKL-RAEWPAILRWMIEGCLDW 376

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
              GL    P    +A E      D    WI D C + +        +A  Y+ + E   
Sbjct: 377 QQNGL--VRPASVTEATEAYFAEQDLLGQWIADECVVRQGDPHCWDRIADLYASWCEYAR 434

Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
               +  + +     +++KGF         +K     +   G+++K
Sbjct: 435 AAGDEPGTVKAFGPAMRRKGF--------QDKRTNQAKGFAGIRVK 472


>gi|154247365|ref|YP_001418323.1| P4 family phage/plasmid primase [Xanthobacter autotrophicus Py2]
 gi|154161450|gb|ABS68666.1| phage/plasmid primase, P4 family [Xanthobacter autotrophicus Py2]
          Length = 462

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 105/475 (22%), Positives = 176/475 (37%), Gaps = 47/475 (9%)

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
            ++    A F+        +  DT AW++        W+    +   + + F        
Sbjct: 25  LTEDNAAARFTELFADKLRFCHDTGAWFE--------WTGAAWQRNRTGLAF-----NWA 71

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
            +L+ +  ++  +             R    + S A    +       F++T D  D   
Sbjct: 72  RNLARDLAESEPD-----------KVRYVTGKTSFATGVEKFARTDPAFAVTMDAWDRDP 120

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDY 485
             LG   G +DL TG          ITK  G         + +L  +        E + +
Sbjct: 121 FMLGTPGGTVDLRTGILRPADPADGITKLAGCTPAAEAMCRRWLQFLEEATGGDAEAIRF 180

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
             +  G +L G  +    I + G GG+GKS  +N++     +     A  +    +    
Sbjct: 181 MQQWCGYSLTGDTREHALIFVYGPGGNGKSVFLNVLTAIMADYATTAAMDTFTASHN--- 237

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
             K    L  L G+R+V  SET E      ++IKQMTGGD +TAR      +     +F 
Sbjct: 238 -DKHPTDLAMLRGARLVTASETEEGRAWAESRIKQMTGGDTITARFM-RQDFFSFRPNFK 295

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
             IV N    +RN DDA  RR+ ++PF +  A  D     KL  +      +W ++G   
Sbjct: 296 LTIVGNHKPALRNVDDAARRRFNIVPFTRKPATPDPELEAKL-KEEWPGILRWMIEGCLD 354

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG---ENLWEESHSLAKSYSEYR 722
           +   GL    P    +A +      D    WI++ C +     ++W+    L +S++EY 
Sbjct: 355 WQKNGL--VRPASVTEATQTYFSDQDLLGQWIEEMCRVERERPDMWDRRADLFESWTEYA 412

Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
                      S ++    + +KGF              S R  KG++L P   S
Sbjct: 413 R---GAGEDAGSAKSFYEAMLRKGFEP--------IRKHSGRGFKGIQLLPKAHS 456


>gi|320013130|gb|ADW07978.1| phage/plasmid primase, P4 family [Streptomyces flavogriseus ATCC
           33331]
          Length = 509

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 88/489 (17%), Positives = 178/489 (36%), Gaps = 35/489 (7%)

Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
           G+    GLL    +D  N  +F       + +               Y W  T  +I   
Sbjct: 44  GEATQHGLLPDTLTDRGNAKLFVKLYANDYRHVP---------GMGWYRWDTTRWQIDED 94

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGS 413
                      V+   +  E    +     +      + R+     +   +     ++  
Sbjct: 95  DT--------VVWAAGDLAESIASSDPRGLYTTQALQQHRRRALSTTGMNAMLTQAKSAP 146

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
              + +  LD+ +  L   DGI+DL TG    P         + +      P+  +   +
Sbjct: 147 GMVLNAARLDADAYALCTPDGIVDLRTGLLKTPDPNKDFHSRSTSVGPRPSPTPRWNRFL 206

Query: 474 SGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
           +  F  +    E++++    +G ++ G    Q    + G G +GKS L++++    G+  
Sbjct: 207 TDTFGDDAEGTEMIEFLQLLLGYSVTGDVGGQVLPFLFGSGKNGKSVLLDVLMKLLGDYA 266

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
                   + +            L  L G R+++ SE    D+ + A++K +TGGD + A
Sbjct: 267 DAAPPGFLMAR----PYEGHPTDLAELHGRRVIVCSEVKHGDKFDEARVKLLTGGDRIKA 322

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKL 647
           R      +     +   +++ N    V     A+WRR  +IPF + +++  +  + A  L
Sbjct: 323 RRM-RQDFFSFQPTHKLWLLGNHRPEVGTGGFAFWRRMRLIPFTRVVSDDRKIDNLADIL 381

Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
            T+       W + G + Y++   D+  PE    A     +  D    + ++CC +G  L
Sbjct: 382 VTEEGPGILGWLIDGARRYLAGDKDLTGPERVRIATTAYAETEDHTGRFFEECCTLGPEL 441

Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
             E   L  +Y  + ++E       +++R      ++     G+   K       ++   
Sbjct: 442 RAEQTGLYTAYRTWCQEEGA---PAMTSRAFAARAREL---AGLASPKEMILSNQRKYYP 495

Query: 768 GLKLKPAFE 776
           G+ L P  E
Sbjct: 496 GIGLLPEQE 504


>gi|118579792|ref|YP_901042.1| P4 family phage/plasmid primase [Pelobacter propionicus DSM 2379]
 gi|118502502|gb|ABK98984.1| phage/plasmid primase, P4 family [Pelobacter propionicus DSM 2379]
          Length = 524

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 98/478 (20%), Positives = 184/478 (38%), Gaps = 38/478 (7%)

Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356
            +P      +F+D      F+   +    Y      W +        +        A   
Sbjct: 63  ALPVSNAGDQFTDLRLSERFAAMFRDQLRY------WSE--SGKWLAFDGRRWTTDAPGG 114

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
            F   ++E + +L  +   N+                  +E + +  +  ++ +     S
Sbjct: 115 GF-PFIRELLKNLYRKALYNSDFLVRTEELKALLK----LEAHPRQATLLEACKQRPELS 169

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
           + S  LD     L   +G +DLE+G  +      ++T+     +       +FL  +   
Sbjct: 170 VASAELDRHPMLLTVLNGTIDLESGALLPHDPANFLTRLVFIEYDPTAECPKFLAFLDRI 229

Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
           F   +E++ Y  R  G  L G    Q  +   G+G +GKS L N+ +   G+        
Sbjct: 230 FASDKEIISYIQRFAGYCLTGLTGEQVLLFFYGLGANGKSVLANVFRALCGDYASTAGAE 289

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             ++++R          L  L GSR+V++SE ++ + +  A+IKQ+TG D ++ R  YG 
Sbjct: 290 LLMVRDRR----SPTNDLAGLRGSRLVVVSEFDDGERLAEAQIKQLTGEDAISCRFLYGE 345

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653
            +      F P ++ N    +R  D   WRR+ ++ F+  I    RD    +KL  +   
Sbjct: 346 -FFSYVPQFKPLLIGNHRPKIRGTDHGIWRRFHLVSFNVVIPPEERDPHLQKKL-LQELP 403

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
               W ++G   +  +GL+   PE    A  E RQ  D +  WI + C     +   + +
Sbjct: 404 GILAWAVRGCLDWQRQGLNP--PESVKAAVTEYRQAEDVFGQWIAEYCHRDVGMTAPAAA 461

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           L +S++E+         + ++T      L   GF         +++       +GL L
Sbjct: 462 LLRSFAEF------SGWRNVTTTKFGRMLTDAGFS--------KEKSHGTIRWRGLGL 505


>gi|325526291|gb|EGD03902.1| P4 family phage/plasmid primase [Burkholderia sp. TJI49]
          Length = 548

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 99/540 (18%), Positives = 189/540 (35%), Gaps = 32/540 (5%)

Query: 251 RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA 310
             +S      + +    +   ++ +       +                        +D 
Sbjct: 3   YAFSLLNGGLNPDRLEEELFEYNADCCKPPLPESEVARVAINVIKSHQENVGHIMHTTDL 62

Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLS 370
            N    S   +    Y  +TK W +K           + +     ++ L   ++ +  + 
Sbjct: 63  GNAERMSELYRETLRYVCETKQWLEKQ-------DSGVWQRVDE-LHVLSLARKLIALIY 114

Query: 371 EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG 430
           EE    +  ++      +     Q  E N+  K+      +    ++++  LD     L 
Sbjct: 115 EEMFLLSPGNR-----QSMAMHAQYTESNTGLKNAVDLFRSEPGIALSAKDLDCGDWLLP 169

Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRC 489
            ++G++DL++G       +L+IT +    +        +   +         +++Y  R 
Sbjct: 170 VRNGLIDLQSGTFTPMRPDLHITYTAAVDYDPNATCPIWEGFLLQIMNGDVALVEYLRRA 229

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR--PPEAG 547
           +G  L             G G +GKST +N+++  FG+          + +N        
Sbjct: 230 IGYTLTTMTSEHALFFAYGSGANGKSTFLNVLRALFGDLGAQANGDMLLEKNGAGGMSQN 289

Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
            A+  + RLMG R+V +SE  +    +   +K  TGG+ +TAR+ Y N + E    F  +
Sbjct: 290 AASSEVARLMGKRLVAMSEVEDGRHFSEKTVKWYTGGEVITARMLYQNAF-EFKPRFKLW 348

Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKA 665
           +  N    V+  D   WRR  +IPF   I    RD    +KL  +       W L G + 
Sbjct: 349 LAGNYKPTVKGSDHGIWRRMKLIPFTVTIPPEERDPDLERKLC-EELPGILNWALAGCRQ 407

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
           +   G  ++ P V      E R   D   +W+ +                K +  + E +
Sbjct: 408 WRENGYKLNEPNVIASEVAEYRSEMDVVHSWLSEFTRDDPEGEIHFGDTYKFFKSWSESQ 467

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
            N+     S   +   LK KG+    K           R+ KGL+L    E  ++    +
Sbjct: 468 YNFSY---SGNKLGRILKDKGYAAASKPH---------RVYKGLRLIVDLEFNENTGAYV 515


>gi|241894876|ref|ZP_04782172.1| primase [Weissella paramesenteroides ATCC 33313]
 gi|241871884|gb|EER75635.1| primase [Weissella paramesenteroides ATCC 33313]
          Length = 796

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 141/784 (17%), Positives = 276/784 (35%), Gaps = 54/784 (6%)

Query: 18  FKLIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD 74
           +  IP+     R         W     +   ++   A G  F     + P +  D+D   
Sbjct: 30  YTKIPVSAMTGRHASSTDERTWTTFDEALANMEIFDADGLAFFL---KPPFFGIDMDHYQ 86

Query: 75  EKTANTFKDTFEILHGTPIVRIG------QKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
           ++     +       G  I  +G      Q  + +           K +  +     +++
Sbjct: 87  DEIDLYEQGYNTTQLGMAIEAMGSYTELSQSHEGIHIIAKGTLPGDKSRQNQDGDKVVEM 146

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED---VEYLFKFFQEITVPLV 185
              G++F    +     K+                L+  E+   +E +     ++T   V
Sbjct: 147 YSTGRFFALTGMSIMGHKDTINAPGQEMIDHVYNTLIRPEERPRLEDVVIEHNDLTKEEV 206

Query: 186 KDKKSIIPSKTWTNNNNRQYTNRE----ITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
            +K                    E      A L+      +    D ++     +    R
Sbjct: 207 IEKALASNGGANFKKLYDGNWQDEYGSASEADLAFVNLLAFWTGRDRYL-----MDEIFR 261

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKW----DTFDFEEIGDTAKKRSTFTSLFYHHGKL 297
            S   ++         STY E   N       +T+  +    +    +      Y H   
Sbjct: 262 DSGLMRDKWDE-KHGKSTYGEGTINRAITDVTETYRPKTEAFSVVIGNGDEEKVYPHHDY 320

Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLY-TADTKAWYKKDKNNVYIWSLTLDKITASIM 356
             +G+    +    +K +    +K    +   D   W +  +  V+   + L  I     
Sbjct: 321 TDQGMAERFYERWGDKVLHVDSEKSETTFMVFDGTVWKRDVERVVHKLFIKLSDIILETE 380

Query: 357 NFLVSMKEDVFDLSEEPE---DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
             ++  +  V +  ++ +        SK  +   N  ++        K  ++A+ L A S
Sbjct: 381 EPIMPPEPTVENYPDQKDLELAEKNYSKDKKSAINAFHKFAKSVRTDKGLNSAKKLLA-S 439

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
           + ++  ++ D     +   DG+ DL TG++     + Y TKST     +    +EF   +
Sbjct: 440 MVNVDINIFDKEVGVINTPDGVYDLATGERSDNDPKRYFTKSTLIAPDKNLEPKEFKTFL 499

Query: 474 SGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           +       +++DY  + VG ++ G  + Q ++ + G G +GK  LM+ IK A G+     
Sbjct: 500 NQVMLGDADMVDYLMKFVGYSMFGNGEEQEYVLLYGNGRNGKGVLMSAIKNALGDYVTAV 559

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
              + +   +   +   N  L RL G+R+V +SE  +N +++AA IK++TGG    A   
Sbjct: 560 NPDTFMDDGKKSTSN--NDELARLRGARLVSVSEIAQNKKLDAAIIKKLTGGGTFVANEK 617

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
           Y   Y E  ++  PF   N    + +  +  WRR  VIPF+  I     D +   KLET 
Sbjct: 618 YNRPY-EFQSAGVPFFDTNYLPQINDTSEGIWRRTNVIPFNLTIKEEDVDVNLGHKLET- 675

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
                  + +K    + ++GL   +P    +A E+    +D    +I +     E  + E
Sbjct: 676 EAGAILWYLIKAATKWRNEGLGP-VPYAVKQANEKYHSSSDPIGEFIKETFIENEAGFVE 734

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
              +  ++ ++  +E   D              +K     + +    K     R  KG+ 
Sbjct: 735 GPDVTNAWGQFVGEE--PDDYP----------TRKMLGSELAKRFKTKRTARGRGYKGIM 782

Query: 771 LKPA 774
           LK  
Sbjct: 783 LKEG 786


>gi|48697236|ref|YP_024966.1| putative primase/helicase protein [Burkholderia phage BcepC6B]
 gi|47779042|gb|AAT38405.1| putative primase/helicase protein [Burkholderia phage BcepC6B]
          Length = 888

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 157/844 (18%), Positives = 277/844 (32%), Gaps = 135/844 (15%)

Query: 38  EQLLSSEKIDK----LPACGFG-FVCGVGEQPLYAFDIDSKDEKT--------ANTFKDT 84
            + L++E++       PA G      G     +   D+DS   +T        A      
Sbjct: 68  NRPLTAERLAHHVNGGPAYGAAQIEPGASTTRIACLDLDSHKGETPWPDMQDVAVRIMAR 127

Query: 85  FEILHGTPIVRIGQKPKILIPFRMNKEGIK-----------------KKKTTESTQGHLD 127
            E     PI         L  + +  E                    +  T     G ++
Sbjct: 128 LEAAGLRPIPFRSSGGAGLHIYVLWDEPQDAYSVRCALRAALAACELRDGTKGIAAGQVE 187

Query: 128 IL---------GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
           +          G G  FV     P   K      P   F+++D P     ++++      
Sbjct: 188 VFPKQNSVPSDGFGNMFVL----PLAGKS----VPLDSFELDDMPKTFAAEMDW----PS 235

Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238
              VPLV  ++ ++P              +     +   G +     ++ W  VV  +HH
Sbjct: 236 SAAVPLVAREEIVMPGTADV--PVELELIKSALDMIPNAGVD--ELDYEAWRDVVFGIHH 291

Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENF-NYKWDTFDFEEI--GDTAKKRSTFTSLFYHHG 295
             RGS  G  +A  +S + S Y+        W                R+       H  
Sbjct: 292 AARGSDDGLALAHEFSARSSKYNPRFLDERVWPHIGKTGTDERAPITGRTILHLARAHGW 351

Query: 296 KLIPKGLL------------ASRFSDAYNKAM--FSIYKKGHFLYTADT----------- 330
           +   +               A R ++   +     +       ++               
Sbjct: 352 QEPIEDDFEVAARVEAIAVGAPRAAEPAVEVRGGDAPLDDDEVIFVQSDPPAKPPRASKK 411

Query: 331 ----------------------KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE---- 364
                                 +   +     +Y+  L    +   +        E    
Sbjct: 412 KRDGDDEPPKGYRARTEFGNAERMLDRFGAGLMYVPELEAWYVWTGVYWRRAVQVELENM 471

Query: 365 ---DVFDLSEEPEDNNKNSKSPRFWF-NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
               +  L +E E+     +   F+      ++  +  N      A S +   +  +T  
Sbjct: 472 AKDTIRALVDEAEELQTAEERIEFFKFCAACQKAAMVSN--MIRLAAS-DPRVVVPVTE- 527

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ES 479
            LD  +  LG  +G +DL TG  + P KE  IT  T   +      + F   V   F + 
Sbjct: 528 -LDKHTHLLGVGNGAVDLRTGALLPPGKEHRITVVTPVEYDPRAAGKLFEQTVRDVFSDD 586

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI- 538
            E +++F R VG ALLG  +    I   G G +GKST++  I+ A G      +  + + 
Sbjct: 587 AEQVEFFQRLVGYALLGTPREDLLIIPHGTGSNGKSTVLGKIREALGAHAKSASAETFLS 646

Query: 539 -MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
                   AG A   L+RL G+R V + E +E  E+    IK MTGGD + AR  +  T 
Sbjct: 647 ASGGPGAAAGAAREDLLRLRGARFVYVGEPDEGSELREGLIKAMTGGDPIPARGLWSKTT 706

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET-----KYT 652
            E   ++  F+  N    V+  D A WRR +++PF++   ++D +  +            
Sbjct: 707 IEVVPTWVAFMPTNHKPIVKGDDHAIWRRLMLVPFERNF-DKDPTIKKDPARAERLAAEL 765

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
                W ++G  AY   GL          A++  +   D    WID+ C +G +    + 
Sbjct: 766 PGVLAWCVRGALAYQQHGLRPT--SSVAAARDAYKADMDLLADWIDERCRVGRDAASTNE 823

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
            L +S+  + EQ     R   ++R +   +  +GF      +         R   G+ + 
Sbjct: 824 DLWRSWRAFAEQRGEL-RFIANSRALARRIAARGFS-----QIKNTYGIRGRGFAGICVN 877

Query: 773 PAFE 776
              +
Sbjct: 878 DEVD 881


>gi|163854284|ref|YP_001642327.1| P4 family phage/plasmid primase [Methylobacterium extorquens PA1]
 gi|163665889|gb|ABY33256.1| phage/plasmid primase, P4 family [Methylobacterium extorquens PA1]
          Length = 697

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 134/763 (17%), Positives = 247/763 (32%), Gaps = 82/763 (10%)

Query: 24  RLGDKRPQRLGKWEEQLLSSEKID---KLPAC-GFGFVCGVGEQPLYAFDIDSKDEKTAN 79
           +   K P +L  W    L  E I+     P     G   G     +   D+D       +
Sbjct: 2   KPRTKEP-KLKNWTGITLEIEDIEAHGTFPEHFNIGIKLGSKSNGIVDVDLDC------D 54

Query: 80  TFKDTFEILHGTPIVRIGQKP--KILIPFRMNKEGIKKK-KTTESTQGHLDILGCGQYFV 136
                   L  T     G+         +R++      + K   S +  +++ G     V
Sbjct: 55  AAVSLGARLLNTETRVFGRDDNRASHYLYRVHDPRSTLRFKHPVSGEVLVELRGNNSQTV 114

Query: 137 AYNIHPKTKK--EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS 194
                 +      +   + P  F+ +   L  +     L      ++    +  +  +  
Sbjct: 115 LPGSIYEDGSIIRFEDYSLPEPFETDWATLERQCG---LISAGTVLSEFWKEGSRHALAL 171

Query: 195 KTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWS 254
                  +++      T  +    E   +    + +  V         +S  K   +   
Sbjct: 172 ALGGWAAHKRIDQGAFTRLIEAVAEYMNDDDVADRVECVR--DSYIDLASGNKVAWKGDL 229

Query: 255 KQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKA 314
            Q   Y       KW     +   + A ++S                 L +  SD  +  
Sbjct: 230 DQLIDYRIMLAISKWLMVSAKLELNPATQQS---------------KKLPTVTSDLQSGQ 274

Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
            F  +   + ++  D + +Y++  +     S             L S+K  V D  +  +
Sbjct: 275 DFCDHIGDNLIFCDDEERFYQRLNDVYEPAS-------------LASVKGTVMDYVKSFD 321

Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
            +  N +  +   +     +       +          S   I+S   ++    +G ++G
Sbjct: 322 ADVTNYEEAKKLKSAQSMSRINAIVDVS---------RSSLRISSSQFNTDPFLVGCRNG 372

Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMA 493
           +LDL  G+ VK      +T+  GT +        F++ +   F+   E +D+  R VG  
Sbjct: 373 VLDLRAGKLVK--PSCIVTRRLGTNYDSQARCPSFVEFLQQVFDADREKIDFIRRAVGYT 430

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           L G    Q      G G +GKST + +I+   G+        S +              +
Sbjct: 431 LTGSTAGQCIFVAIGSGANGKSTFLKIIQELMGDYGTSIPSNSLMASKFG---NDKTDDI 487

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             L G R V  SE     ++  AK+K MTGGD ++ R  YG  Y      F  +   N  
Sbjct: 488 ASLNGRRFVSASEGEIGQKLAVAKVKLMTGGDIISCRPLYGQ-YFNMKPEFKIWFGTNDL 546

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAY--ISK 669
             ++  D+A WRR  +I F        RD     +L+         W L+GV+    +  
Sbjct: 547 PVIQGGDEAIWRRIHLIDFPVSFKEGQRDGGLFDRLKL-ELPGILSWALQGVQELGEMRN 605

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G  ++ P          R  +DT  +++D  CD  E      + L ++Y  +        
Sbjct: 606 GF-LNPPASVRNETTRYRSDSDTVASFVDVACDKVEGAIVMMNVLHEAYVRWCNVSG--- 661

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
            + + +      L +  F          K  K      G+KLK
Sbjct: 662 LEALPSGLFGKELSRLDFPI--------KRRKEGNGRLGIKLK 696


>gi|21234191|ref|NP_639791.1| putative DNA primase/helicase [Streptomyces coelicolor A3(2)]
 gi|13620678|emb|CAC36717.1| putative DNA primase/helicase [Streptomyces coelicolor A3(2)]
          Length = 506

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 95/486 (19%), Positives = 177/486 (36%), Gaps = 35/486 (7%)

Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
           G+    GLL    +D  N  +F       F +  +            Y W  T  +I   
Sbjct: 41  GEASANGLLPDTLTDRGNAKLFVKLYANDFRHVPNIG---------WYRWDTTRWQIDED 91

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGS 413
                      ++   +  E    +     F     ++ R      S   +      +  
Sbjct: 92  DT--------VLWAAGDLAETIATHDPRGLFTTTALHKHRTRAMSTSGMNAMLTQARSAP 143

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
              + +D LD+    L    G++DL TG    P         + T   +  P   +L  +
Sbjct: 144 GMVLKADRLDADPYALCTPRGVVDLRTGLLRAPDPNKDFHSRSTTVGPQQMPVPRWLRFL 203

Query: 474 SGYFE-SEE---VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
           +  F    E   ++DY    +G ++ G   AQ    + G G +GKS L++++    G+  
Sbjct: 204 TDTFGADAEGQQMIDYLHLLLGYSITGDVGAQILPFLWGTGKNGKSVLLDVMMKLLGDYA 263

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
                   + +            L  L G R+ + SE    D+ + A++K +TGGD + A
Sbjct: 264 DAAPPGFLMAKPFE----GHPTDLAELHGRRVYVCSEIKPGDKFDEARVKLLTGGDRIKA 319

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKL 647
           R    + +S    +   +++ N    V     A+WRR  +IPF++ + +  +  + A  L
Sbjct: 320 RRMRQDPFS-FEPTHKLWLLGNHKPEVGTGGFAFWRRMRLIPFERVVPDDRKIDNLADLL 378

Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
             +       W + G + Y+    D+  PE    A     +  D    + ++CC +G  L
Sbjct: 379 VMEEGPGILAWLIDGARRYLGGDRDLTGPERVRIATTAYAETEDHTGRFYEECCRLGPEL 438

Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
             E  +L  +Y+ +   E     + IS+R      ++     G+   K  K    ++   
Sbjct: 439 RAEQTALYAAYTAWCHNEGA---QIISSRAFASRTREL---VGLASPKEMKVSNQRKYYP 492

Query: 768 GLKLKP 773
           G+ L  
Sbjct: 493 GIGLLT 498


>gi|83648331|ref|YP_436766.1| hypothetical protein HCH_05685 [Hahella chejuensis KCTC 2396]
 gi|83636374|gb|ABC32341.1| predicted ATPase [Hahella chejuensis KCTC 2396]
          Length = 758

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 100/548 (18%), Positives = 176/548 (32%), Gaps = 60/548 (10%)

Query: 230 IPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTS 289
           +            S    E           +D   F         E   D     +  + 
Sbjct: 260 LRAGGLSVAILTPSEDKPEGWDSADALEEGFDAVGFISAGPRMPIEPSCDEEDSETLLSD 319

Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349
           + +               ++      F+      + Y +    W         +WS    
Sbjct: 320 VDWA--------------TEDGLAMAFTRRYGEDWRYCS---LW-----GKWLVWSGMRW 357

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
                    ++ ++  V  +         + K              +   +   +  +  
Sbjct: 358 NSD-----QMLFVQHLVRGVCRAASQKADSDKRKG----------RLASAATIAAVEKIA 402

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
            +    + T +  D+    L    G+++L TGQ     +E  +TKST            +
Sbjct: 403 RSDPAHASTPEEWDADIWALNTPGGVVELRTGQIRAHRREDRMTKSTSA--TPKGDCPTW 460

Query: 470 LDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
              ++       E+ +Y  R VG  L G   A     + G G +GKS  +N++    G+ 
Sbjct: 461 RTFLADVTGQDAELQEYLQRVVGYCLSGATSAHALFFLYGTGANGKSVFVNVVGAILGDY 520

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                  + +         +    L  L G+R V   ET +    N +K+K +TGGD ++
Sbjct: 521 AANAPMDTFME----ARGDRHPTDLAGLRGARFVSAIETEQGRRWNESKVKAITGGDKIS 576

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646
           AR      + E    F   I  N    +RN D+A  RR  +IPF   +    RD     K
Sbjct: 577 ARFM-RQDFFEYAPQFKLLIAGNHKPAIRNVDEAMKRRLHLIPFTVTVPPEKRDGGLTDK 635

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           L          W ++G   ++  GL    P+    A EE  +  D    WI++ C+    
Sbjct: 636 L-LAERGGILAWAVEGCLEWLRDGLKP--PDCVRAATEEYFEAEDALGQWIEERCERIGQ 692

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
               S  L   + E+ E+   Y     S +  +  L  + F+         +     R  
Sbjct: 693 AKTASSELYADWREWAERAGEY---VGSIKRFSETLITRDFM-------QSRLHGGTRGF 742

Query: 767 KGLKLKPA 774
           KGL+L+P 
Sbjct: 743 KGLRLRPK 750


>gi|30795066|ref|NP_851516.1| putative DNA primase/helicase [Streptomyces rochei]
 gi|30698439|dbj|BAC76552.1| putative DNA primase/helicase [Streptomyces rochei]
          Length = 485

 Score =  327 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 100/486 (20%), Positives = 181/486 (37%), Gaps = 39/486 (8%)

Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
           P GLL    +D  N  +F+      F +          +    Y W     K T      
Sbjct: 16  PTGLLPDELTDRGNAKLFARLYSDRFRHV---------EGLGWYSWDQYRWKRTGGEKGA 66

Query: 359 LVSMKEDVFDLSE-EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
           + +  +    +   +P     N +           R+  +  +  K+  Q  +A    S+
Sbjct: 67  MWAAGDMAEQMPRTDPHGTFSNRELAAH-------RRRTQSTAGVKALLQQAQAAPGLSL 119

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
             D +D     L    G++DL TG+  KP     +     T   E  P   +   +   F
Sbjct: 120 DPDSMDGDIYALCTPGGVVDLRTGELRKPDPLADMHSRATTVGPEDMPLPRWHSFLRDTF 179

Query: 478 ESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
             +    E + +    +G ++ G   AQ    + G G +GKS L+ ++    G+      
Sbjct: 180 GDDAKGRETIAFLHLLLGYSVTGDVGAQILPFLYGSGANGKSVLLEVMMQILGDYANAAP 239

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
               + + +  E    +  L  L G RIV+ SE   ND+ N A++K +TGGD +TAR   
Sbjct: 240 PGFLMEKGKFTE---HSTELTELHGRRIVVCSELKPNDKFNEARVKLLTGGDTITARRM- 295

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKY 651
              +     +   +++ N    V     A+WRR  +IPF++ + +  +  + AQ+L    
Sbjct: 296 RQDFFTFRPTHKLWLLGNHRPEVGTGGYAFWRRMRIIPFERKVPDELKIDNLAQELVRDE 355

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG------E 705
                 W ++G + Y++    +  P     A E   +  D    +I + C  G       
Sbjct: 356 GPGILHWLIQGAQHYLATRDPLHGPASVRLATEAYEKTEDHIGRFIAERCTKGEGGQPNP 415

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
            L  E   L  SY  +  +E     +  ++R     ++Q     G+       +   +++
Sbjct: 416 ELRVEQKLLYASYGRWCSEEG---IRPATSRAFASRIRQ---ELGLASPAEMIKNNDRKL 469

Query: 766 IKGLKL 771
             GL L
Sbjct: 470 YPGLAL 475


>gi|297564960|ref|YP_003683932.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946]
 gi|296849409|gb|ADH62424.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946]
          Length = 882

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 174/450 (38%), Gaps = 29/450 (6%)

Query: 335 KKDKNNVYIWSLTLDKITASI-MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
             +     +W+ T  + + ++ +  +  + + V   + +       ++  +  F    + 
Sbjct: 459 HVEGQGWLVWAGTHWERSDAVALEIMQRLPQLVLQEALQA-GEAGETEKSQKLFKWAQKS 517

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
             +     +        A     +    LD+ +  L  ++G+L+LE+       K  + T
Sbjct: 518 DRLSTVRNSVVM-----ASWALRVREWELDARTDELPLENGVLNLESLTLGPHRKLAWHT 572

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
                P+        +   +      E +  Y  + VG +LLG N+        G G +G
Sbjct: 573 HVLPHPYDPYAECPRWERFLEEVLPDENLRRYVQKAVGYSLLGDNREHVIFLCYGSGANG 632

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KS  + ++ + FG           + +N    + +    +  + G R+V++ E +     
Sbjct: 633 KSVFLEVLSWLFGPYAHRADPELLLQRN----SDRHPTEIAAMRGKRLVVMQEVDPEGIW 688

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
            +A +K M+G + +TAR    N       ++  +I  N     R+  +A+WRR  +IPF+
Sbjct: 689 RSALLKSMSGDNTLTARKIRENP-ITFTVTWKVWIAANHLPRSRDHSEAFWRRIKLIPFN 747

Query: 634 KPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
             I    RD +   KL  + ++    W ++G++ Y  +GL    PE   +A    R+  D
Sbjct: 748 VTIPPERRDRTLPWKL-REESVGLLAWAVQGLRMYYQEGLQ--EPEAIAQANRAYRERED 804

Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
               ++ + C +G      S +L  +Y E+  +E     + +S +     L+Q+G     
Sbjct: 805 QVGRFLKERCQLG-GGRTASSALYAAYQEWALEEGE---RMLSQKAFVAELEQRGLE--- 857

Query: 752 KREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                 K         G++L    +S   +
Sbjct: 858 -----RKRLAEGIFFLGMELPTERKSSTSD 882


>gi|17547948|ref|NP_521350.1| hypothetical protein RSc3229 [Ralstonia solanacearum GMI1000]
 gi|17430254|emb|CAD17017.1| putative bacteriophage-related protein [Ralstonia solanacearum
           GMI1000]
          Length = 759

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 164/469 (34%), Gaps = 45/469 (9%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           ++      F+      + Y A   AW         +W     +   +     ++  + + 
Sbjct: 321 TEDALALAFTRRYHRDWRYVA---AW-----GRWLVWDGHRWRTEDT-----LAATDLIR 367

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
           ++      + +N +              +  +       +   A    + T+   D+   
Sbjct: 368 NVCRHAALHAENPRLA----------AKLATSGTIAGVERLARADRRHAATTSEWDADPW 417

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
            L    G++DL TG++    ++  +TK T            +   ++       E+  Y 
Sbjct: 418 LLNTPGGVVDLRTGRQRPHDRDDRMTKITTA--TPVGDCPTWRQFLAEVTGGDVELQAYL 475

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
            R  G AL G  +      + G G +GKS  +N +    G+     A  + +       A
Sbjct: 476 QRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYAANAAMDTFMETR----A 531

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
            +    +  L G+R V   ET +      +K+K +TGGD ++AR      + E    F  
Sbjct: 532 DRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM-RQDFFEFFPQFKL 590

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664
           F+  N    +RN D+A  RR  +IPF   +    RD    QKL          W ++G  
Sbjct: 591 FVAGNHKPAIRNIDEAMKRRLHLIPFTVTVPPERRDKHLQQKL-LAERDGILAWAVQGCL 649

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
            +   G  +D P+  L A EE  +  D    W+D+ C    N    +  L   + ++ E 
Sbjct: 650 DWQRLG-RLDPPQQVLDATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKQWAEA 708

Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
              +     S +     L  +G           +     R  +G+ LK 
Sbjct: 709 AGEFA---GSQKRFADLLLTRGVEK-------WRNTAGLRGFRGVGLKH 747


>gi|258543726|ref|YP_003189159.1| hypothetical protein APA01_26880 [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634804|dbj|BAI00780.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-01]
 gi|256637860|dbj|BAI03829.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-03]
 gi|256640914|dbj|BAI06876.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-07]
 gi|256643969|dbj|BAI09924.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-22]
 gi|256647024|dbj|BAI12972.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-26]
 gi|256650077|dbj|BAI16018.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-32]
 gi|256653067|dbj|BAI19001.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656121|dbj|BAI22048.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-12]
          Length = 466

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 166/479 (34%), Gaps = 44/479 (9%)

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
                  A    YK     Y      W+         W+ T  +       F        
Sbjct: 31  TEHGMAAAFTERYKDE-LRYDHKAGCWFL--------WTGTHWQEDCKHRAFSY-----A 76

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
             L  E     +  +                + S      +        ++  +  D   
Sbjct: 77  RMLVAEANQLCEQKEQA-----------ITGKASFCGGVERFARTDPAHAVVPEDWDKDP 125

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485
             L    G +DL TG          IT+       +  P  ++   ++       E++ +
Sbjct: 126 YLLATPGGTVDLRTGALRPACPADMITRVAAVAPSD-MPYPQWERFLNEATNGDTELIVF 184

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
             R  G  L G  +    +   G GG+GKS  +N +    G+   + A  +    +    
Sbjct: 185 LKRWCGYCLTGDTREHALLFGYGPGGNGKSVFLNTLSRIMGDYATVAAMDTFTASH---- 240

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
             + +  L  L G+R+V  SET E      ++IKQMTGGD +TAR    + +      F 
Sbjct: 241 GDRHSTDLAMLRGARLVTASETEEGRAWAESRIKQMTGGDPITARFMRQDNF-TFQPQFK 299

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
             IV N    ++N D+A  RR+ ++PF     N D     KL+         W ++G   
Sbjct: 300 LTIVGNHKPVLKNVDEAARRRFNIVPFIHKPKNPDKDLESKLQ-GEWPGIMYWMIQGCLE 358

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
           +  +G+    P V  +A  E  +  DT+  W+ + C +  +L  + + L K + E+    
Sbjct: 359 WQREGM--PRPAVVKEATAEYFEAQDTFGQWLAERCILDPSLETKPNMLLKDFQEWCRNN 416

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
              +         + N + +G +   +  +  +  K  + ++G+ L+P         N 
Sbjct: 417 GEPE---------SDNKRMRGMLEKTEGVRYHRHKKLGQSVRGIGLRPHLHEAQRWENY 466


>gi|294633256|ref|ZP_06711815.1| DNA primase/helicase [Streptomyces sp. e14]
 gi|292831037|gb|EFF89387.1| DNA primase/helicase [Streptomyces sp. e14]
          Length = 502

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 84/485 (17%), Positives = 171/485 (35%), Gaps = 36/485 (7%)

Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357
           +P   L    +D  N  +F    +  F +          +    ++W     K       
Sbjct: 39  MPTAPLPPSLTDRGNARLFVRLHRDQFRHV---------EGLGWFVWDGYRWKRGGGEKA 89

Query: 358 FLVSMKEDVFDLSE-EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
            L +  E   D+ + +P       +           ++     +  K+     +A    S
Sbjct: 90  ALWAAGEMAEDMPDSDPRGVFSEREIAHH-------KRRTLSTAGMKALLTQAKASPDLS 142

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
           +  D LD     L    G++DL  G   K            +   +   +  +   ++  
Sbjct: 143 VDPDDLDGDPYALCTPAGVVDLHNGHIRKADPTRDFHSRATSVAPQRMETPRWHRFLADT 202

Query: 477 FESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           F  +    E++D+    +G ++ G   AQ    + G G +GKS L++ +    G+     
Sbjct: 203 FGDDAEGREMIDFLHLMLGYSITGDVGAQVLPFLHGEGKNGKSVLLDTMIQILGDYADAA 262

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
                + +       + +  L  L G R+V+ SE   ND+ + A+++ +TGGD + AR  
Sbjct: 263 PPGFLMDRGAF---SEHSTELTELHGRRLVVCSELKPNDKFDEARVRLLTGGDKIKARRM 319

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
               Y     +   +++ N    V     A+WRR  ++PF + +    R  + A +L   
Sbjct: 320 -RQDYFSFTPTHHLWLLGNHRPEVSTGGFAFWRRIRLLPFTRTVPAERRIDNLAFELVRD 378

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG----EN 706
                 +W ++G + Y++    ++ P+    A        D    ++ +CC        +
Sbjct: 379 EGPGILQWLIEGAQRYLATRDPLEGPDRVRIATSAYASTEDHIGRFLAECCTRDGENARD 438

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
           L  E   L   YS +         +  + R     ++Q     G+       +   ++  
Sbjct: 439 LRVEQGLLYTEYSSWCHA--GEGIRPATPRAFANRVRQ---EVGVASPADMIKSNGRKYY 493

Query: 767 KGLKL 771
            G+ L
Sbjct: 494 PGIAL 498


>gi|222112386|ref|YP_002554650.1| hypothetical protein Dtpsy_3221 [Acidovorax ebreus TPSY]
 gi|221731830|gb|ACM34650.1| phage/plasmid primase, P4 family [Acidovorax ebreus TPSY]
          Length = 760

 Score =  324 bits (829), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 117/710 (16%), Positives = 216/710 (30%), Gaps = 81/710 (11%)

Query: 80  TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
              DT   L G     + ++ K        K+         + +    +   G       
Sbjct: 102 RVLDTATELVGRAPATLARRGK--------KDAPVDDLGPATAKWDY-LDAQGHLIAVVY 152

Query: 140 IH--PKTKKEYT-W------TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKS 190
            +  P  KK++  W        PP    + + P ++      L +  ++    L++    
Sbjct: 153 RYDPPGQKKQFRPWDAKRRKMAPPDPRPLYNQPGMTSAAQVVLVEG-EKCAQALIEAGIV 211

Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIA 250
              +    N    +     + A       +      +       A+   + G+     + 
Sbjct: 212 ATTAMHGANAPVDKTDWSPLLAKAVLIWPDRDKPGWEYATQAAQAI--LSAGAKSCHVL- 268

Query: 251 RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR---- 306
                    Y  E     WD  D    G       T       H        + S     
Sbjct: 269 ---------YPPEEAAEGWDVADAIAEGFDVATFLTHGPRLQMHDVADDVDPVVSSDESV 319

Query: 307 -FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
             ++      F+      + Y A    W         +W     +   +     ++  + 
Sbjct: 320 WGTEDALALSFTRRYHRDWRYVA---GW-----GKWLVWDGQRWRTEDT-----LAATDL 366

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
           +  +  +      N                +   S      +   A    + T+D  D+ 
Sbjct: 367 IRSVCRQTAVRADN----------PKVAAKLASASTVGGVERLARADRRHAATTDEWDAD 416

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMD 484
              L    G++DL+TG+     +   +TK T            +   +       +E+  
Sbjct: 417 PWLLNTPGGVVDLKTGRMRPHERADRMTKITTA--TPSGDCPTWKQFIDEVTGGDKELQS 474

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
           Y  R VG AL G  +      + G G +GKS  +N +    G+        + +      
Sbjct: 475 YLQRMVGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYATNAPMDTFMETR--- 531

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
              +    +  L G+R V   ET +      +K+K +TGGD ++AR      + E    F
Sbjct: 532 -TDRHPTDMAGLRGARFVAAIETEQGKRWAESKLKNLTGGDKISARFM-RQDFFEFFPQF 589

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
             F+  N    +RN D+A  RR  +IPF   +    RD +  QKL          W ++G
Sbjct: 590 KLFVAGNHRPAIRNIDEAMKRRLHLIPFTITVPPERRDKNLQQKL-LAERDGILAWAVQG 648

Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
              +   G  +  P+  + A EE  +  D    W+D+ C    N    +  L   +  + 
Sbjct: 649 CLDWQRHG-RLSPPQRVVDATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKPWA 707

Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
           E    +     S +     L  +G           +     R  +G+ LK
Sbjct: 708 EAAGEFT---GSQKRFADLLLNRGLDK-------WRNGMGLRGFQGIGLK 747


>gi|327134279|dbj|BAC76547.2| putative DNA primase/helicase [Streptomyces rochei]
          Length = 500

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 92/491 (18%), Positives = 176/491 (35%), Gaps = 35/491 (7%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
            G+    GLL    SD  N  +F  +    + +               + W  T  ++  
Sbjct: 37  AGEATADGLLPDTLSDRGNAKLFVSFYADDYRHVP---------GLGWFRWDGTRWQVDE 87

Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAG 412
                       ++   +  E                 R R+     S   +     ++ 
Sbjct: 88  DDT--------VLWAAGDLAELLASTDPRGVHSAAALQRHRRRALSTSGMNAMLTQAKSA 139

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
               + + LLD+    L    GI+DL TGQ      +      +     E  P+  ++  
Sbjct: 140 PGMVLNAALLDADPYALCTPAGIVDLRTGQTRTSHPDRDFHSCSTAVAPEAVPTPRWVRF 199

Query: 473 VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
           ++  F      +E++ +    +G ++ G   AQ    + G G +GKS L++++    G+ 
Sbjct: 200 LTDTFGEGAEGQEMIGFLQLLLGYSITGDVGAQVMPFLFGSGKNGKSVLLDVLMKLLGDY 259

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                    + +            L  L G R+V+ SE    D  + A++K +TGGD + 
Sbjct: 260 ADAAPPGFLMAR----PYEGHPTDLAELHGRRVVVCSEVKPGDRFDEARVKLLTGGDRIK 315

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQK 646
           AR      +     +   +++ N    V     A+WRR  +IPF++ + +     + A  
Sbjct: 316 ARRM-RQDFFSFRPTHKLWLLGNHRPEVGTGGFAFWRRLRLIPFERVVPDDRKVDNLADI 374

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           L T+       W + G + Y+S   D+  PE    A     +  D    ++ + C I   
Sbjct: 375 LVTEEGPGILNWLIVGARRYLSGEKDLTGPERVRIATTAYAETEDHTGRFLGESCTIEPG 434

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
           L  E   L  +Y  + + E   +   +S+R     +++     G+   K       ++  
Sbjct: 435 LRAEQTQLYAAYRAWCQNE---EAPAVSSRAFAARVREL---VGLASPKEMILSNQRKYY 488

Query: 767 KGLKLKPAFES 777
            G+ L  A E+
Sbjct: 489 PGIGLVAAEET 499


>gi|30795061|ref|NP_851511.1| putative DNA primase/helicase [Streptomyces rochei]
          Length = 471

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 92/491 (18%), Positives = 176/491 (35%), Gaps = 35/491 (7%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
            G+    GLL    SD  N  +F  +    + +               + W  T  ++  
Sbjct: 8   AGEATADGLLPDTLSDRGNAKLFVSFYADDYRHVP---------GLGWFRWDGTRWQVDE 58

Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAG 412
                       ++   +  E                 R R+     S   +     ++ 
Sbjct: 59  DDT--------VLWAAGDLAELLASTDPRGVHSAAALQRHRRRALSTSGMNAMLTQAKSA 110

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
               + + LLD+    L    GI+DL TGQ      +      +     E  P+  ++  
Sbjct: 111 PGMVLNAALLDADPYALCTPAGIVDLRTGQTRTSHPDRDFHSCSTAVAPEAVPTPRWVRF 170

Query: 473 VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
           ++  F      +E++ +    +G ++ G   AQ    + G G +GKS L++++    G+ 
Sbjct: 171 LTDTFGEGAEGQEMIGFLQLLLGYSITGDVGAQVMPFLFGSGKNGKSVLLDVLMKLLGDY 230

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                    + +            L  L G R+V+ SE    D  + A++K +TGGD + 
Sbjct: 231 ADAAPPGFLMAR----PYEGHPTDLAELHGRRVVVCSEVKPGDRFDEARVKLLTGGDRIK 286

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQK 646
           AR      +     +   +++ N    V     A+WRR  +IPF++ + +     + A  
Sbjct: 287 ARRM-RQDFFSFRPTHKLWLLGNHRPEVGTGGFAFWRRLRLIPFERVVPDDRKVDNLADI 345

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           L T+       W + G + Y+S   D+  PE    A     +  D    ++ + C I   
Sbjct: 346 LVTEEGPGILNWLIVGARRYLSGEKDLTGPERVRIATTAYAETEDHTGRFLGESCTIEPG 405

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
           L  E   L  +Y  + + E   +   +S+R     +++     G+   K       ++  
Sbjct: 406 LRAEQTQLYAAYRAWCQNE---EAPAVSSRAFAARVREL---VGLASPKEMILSNQRKYY 459

Query: 767 KGLKLKPAFES 777
            G+ L  A E+
Sbjct: 460 PGIGLVAAEET 470


>gi|300689921|ref|YP_003750916.1| DNA primase, phage/plasmid [Ralstonia solanacearum PSI07]
 gi|299076981|emb|CBJ49594.1| putative DNA primase, phage/plasmid [Ralstonia solanacearum PSI07]
          Length = 759

 Score =  322 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 90/469 (19%), Positives = 163/469 (34%), Gaps = 45/469 (9%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           ++      F+      + Y A   AW         +W     +   +     ++  + + 
Sbjct: 321 TEDALALAFTRRYHRDWRYVA---AW-----GRWLVWDGHRWRTEDT-----LAATDLIR 367

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
           ++      + +N K              +  +       +   A    + T+   D+   
Sbjct: 368 NVCRHAALHAENPKLA----------AKLATSGTIAGVERLARADRRHAATTSEWDADPW 417

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
            L     ++DL TG++    ++  +TK T      G     +   ++       E+  Y 
Sbjct: 418 LLNTPGSVVDLRTGRQRPHDRDDRMTKITTA--TPGGDCPTWRQFLAEVTGGDAELQAYL 475

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
            R  G AL G  +      + G G +GKS  +N +    G+     A  + +        
Sbjct: 476 QRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYAANAAMDTFMETR----T 531

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
            +    +  L G+R V   ET +      +K+K +TGGD ++AR      + E    F  
Sbjct: 532 DRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM-RQDFFEFFPQFKL 590

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664
           F+  N    +RN D+A  RR  +IPF   +    RD    QKL          W ++G  
Sbjct: 591 FVAGNHKPAIRNIDEAMKRRLHLIPFTVTVPPERRDKHLQQKL-LAERDGILAWAVQGCL 649

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
            +   G  +D P+  L A EE  +  D    W+D+ C    N    +  L   + ++ E 
Sbjct: 650 DWQRLG-RLDPPQQVLDATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKQWAEA 708

Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
              +     S +     L  +G           +     R  +G+ LK 
Sbjct: 709 AGEFA---GSQKRFADLLLTRGVEK-------WRNTAGLRGFRGVGLKH 747


>gi|254384016|ref|ZP_04999362.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194342907|gb|EDX23873.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 495

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 177/479 (36%), Gaps = 38/479 (7%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
             +D  N  +F+      F +          +    Y+W     K T          K  
Sbjct: 25  NLTDRGNAKLFAHLHHDRFRHV---------EGLGWYVWDEYRWKRTGGE-------KAA 68

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
           ++   +  ED   +     F      + R+     S  K+     +A    ++  D LD 
Sbjct: 69  IWAAGDMAEDLPAHDPRGVFTDRELAQHRKRTMSTSGVKAMLTQAKASPELALDPDTLDG 128

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES----E 480
               L    G++DL TG   KP     +         E  P+  F   +   F      +
Sbjct: 129 DKYALCTPAGVVDLRTGDLHKPDPTRDLHSRATHLAPEAMPTPRFHCFLKQTFGDDDKGK 188

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           E++ +    +G ++ G    Q    + GVG +GKS L++++    G+   +      + +
Sbjct: 189 EMIHFLHLLLGYSITGDVGGQVLPFLYGVGANGKSALLDVVIKILGDYADVAPPGFLMER 248

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
            +     + +  L  L G R+ + SE   +D+ + A++K +TGGD + AR      +   
Sbjct: 249 GKF---NEHSTELTELHGRRLFVCSELKPHDKFDEARVKLLTGGDRLKARRM-RQDFFSF 304

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTLEAKKW 658
             +   +++ N    V     A+WRR  +IPF+K + +     + A+ L  +       W
Sbjct: 305 EPTHKLWLLGNHRPEVGTGGHAFWRRIRLIPFEKVVPDHRKIDNLAETLVQEEGPGILHW 364

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE------NLWEESH 712
            ++G KAY++    +  P V   A +      D    ++ +CC  G       +L  E  
Sbjct: 365 MIQGAKAYLASKPPLTGPSVVRTATQAYATTEDHIGRFLAECCTTGAELPDPRDLKVEQG 424

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           +L ++YS +         +  +TR     ++      G+           ++   GL L
Sbjct: 425 ALYRAYSAWCLD--GEGLRPATTRAFATRIRA---EVGVASPNEMLRSNGQKFYPGLAL 478


>gi|225018075|ref|ZP_03707267.1| hypothetical protein CLOSTMETH_02012 [Clostridium methylpentosum
           DSM 5476]
 gi|224949072|gb|EEG30281.1| hypothetical protein CLOSTMETH_02012 [Clostridium methylpentosum
           DSM 5476]
          Length = 775

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 122/785 (15%), Positives = 242/785 (30%), Gaps = 47/785 (5%)

Query: 5   QWKEQAKQAIHNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVG 61
           Q K   +  +  G    P+        +  +   W     + +   K    G GF     
Sbjct: 12  QLKALPQWVVRRG--KCPINPATGQGAKAGQPDTWTTFERAVQASRKY--DGIGFEF--H 65

Query: 62  EQPLYAFDIDS----KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
              +   DID     +  +           ++             +  +           
Sbjct: 66  NNGIVGIDIDHCIDEETGEIDPAALAIIRTMNSYTEKSPSGTGLHIYVYGDIPS-----S 120

Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK-F 176
             ++ + ++++    +YF                  P   K     L  + +   L +  
Sbjct: 121 GRKNPKRNIEMYKEKRYFTVTGEVF--GDCTKVARRPDEVKALYNELFPKPNKPALLRGR 178

Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
               T     D+      +     +  + T  E +  ++   +  Y  + D       A+
Sbjct: 179 MSPQTSVSSLDRGLQHDRELQRLWSGERNTGDESSNDMALMNKLAYWCNRD-----AAAM 233

Query: 237 HHETRGSSKGKEIARRWSKQGSTYD------EENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
               R S   ++   +   +    D      E        T   +       K       
Sbjct: 234 VQAFRESPYTQQKDEKHLAKLERDDYLPRTAERAIADCQRTAADDRDEYRRNKVERAKQA 293

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
                 +  + L     +D     MF+   +G  LY  + K+++               +
Sbjct: 294 SQPASPITAESLKKYALNDKGAAQMFADTYRGRTLYLPEYKSYWTYKNGVWIQ-DKQDLQ 352

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
               +  +   +   + +    P   +  +  P       YR+   +  S         +
Sbjct: 353 TRQLVKRWTDYVLSVIPEKQLSPIQYDPTTGKPPEDEWEVYRKHYGKYCSLRSRDNLIKD 412

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
           A    +  S   D +      ++G L+LE  + +       ++K     +        FL
Sbjct: 413 ARDELAGYSTDFDRNPALFNCKNGTLNLENLKLLPHNPADMLSKQANVNYDPAASCPRFL 472

Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528
             +      +EE  + F + +G AL G    + F    G    +GK TL + +   FG+ 
Sbjct: 473 QFIEEITEGNEERANMFQKALGYALQGDANEECFFLALGKKTRNGKGTLFDSVMNVFGSY 532

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                + + I +    +  +A P L RL+G+RIVI +E ++   IN A +KQ+TG D +T
Sbjct: 533 -GAQMDFNTIARGGVKDGSRATPDLARLIGTRIVISNEPDKGVAINEALLKQLTGNDDIT 591

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQK 646
            R  YG+   +   +F  F+  N    V +       R  ++PF +      RD S    
Sbjct: 592 CRPLYGD-TIQFKPAFKLFVTANSKPSVSDDSLFASDRIKMLPFTQHFKEDQRDTSLKAL 650

Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
             ++        W L+G + Y  +GL             E R+  D    ++DD  D   
Sbjct: 651 FRSEEAKSSILNWLLEGYRKYKEEGLRDT--AEMKALAAEYRKENDYVGMFLDDRFDRDA 708

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW--KSK 763
             +    +L   Y+ + +       K +  R     L +         ++       + +
Sbjct: 709 PRYTTVKALRADYATWCDFVGA---KPMGLRLFKEELPKHDLPLRTVHKQFCVCGAIRPE 765

Query: 764 RIIKG 768
           R   G
Sbjct: 766 RDYTG 770


>gi|254385240|ref|ZP_05000571.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194344116|gb|EDX25082.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 464

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 89/479 (18%), Positives = 173/479 (36%), Gaps = 35/479 (7%)

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
            GL+    SD  N  +F     G + +               Y W  T  ++        
Sbjct: 7   AGLIPDTLSDRGNAKLFVRLYAGDYRHVP---------GLGWYRWDTTRWQVDEDDT--- 54

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGSIFSIT 418
                 V+   +  E                 + R+     S   +     +A     + 
Sbjct: 55  -----VVWAAGDLAEAIATTDPRGIHSNQALQKHRRRALSTSGMNAMLTQAKAAPGMVLR 109

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
           ++LLD+    L    GI+DL TG    P  +      + +   + +P+  +   ++  F 
Sbjct: 110 AELLDADPYALCTPAGIVDLHTGLIRTPEPDKDFHSRSTSTAPKSQPTPRWNRFLADTFG 169

Query: 479 SE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
            +    E+ D+    +G ++ G   AQ    + G G +GKS L++++    G+       
Sbjct: 170 DDAEGREMTDFLHLMLGYSITGDVGAQVMPFLFGSGKNGKSVLLDVLMKLLGDYADAAPP 229

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
              + +            L  L G R+++ SE    D+ + A++K +TGGD + AR    
Sbjct: 230 GFLMARTFE----GHPTELAELHGRRVIVCSEVKPGDKFDEARVKLLTGGDRIKARRM-R 284

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYT 652
             +     +   +++ N    V     A+WRR  ++PF+K +++  +  + A  L T+  
Sbjct: 285 QDFFSFAPTHKLWLIGNHRPEVGTGGFAFWRRMRLVPFEKVVSDDRKIDNLADILVTEEG 344

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
                W + G + Y++   D+  P     A     +  D    + ++CC    +   E  
Sbjct: 345 PGILAWLIDGARRYLAGEKDLTGPAPVRIATTAYAETEDHTGRFFEECCTFDPDHRAEQA 404

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
            L   Y  + + E       +S+R      ++     G+   K      SK+   G+ L
Sbjct: 405 RLYSVYRTWCQNEGA---PTVSSRAFASRAREL---VGLASPKEMILSNSKKYYPGIGL 457


>gi|284504180|ref|YP_003406895.1| D5 family helicase-primase [Marseillevirus]
 gi|282935618|gb|ADB03933.1| D5 family helicase-primase [Marseillevirus]
          Length = 903

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 118/655 (18%), Positives = 227/655 (34%), Gaps = 60/655 (9%)

Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL-SCFGEEFYNGSHDEWIPVVMA 235
            + I     K  +   P++     +       E+         +     ++D+W+ V   
Sbjct: 265 VRGIIPSEKKMTRRKRPARLTKTVDQIMADIAEVRNSRVLDMLDSSRAENYDDWMNVGWT 324

Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIG-------DTAKKRSTFT 288
           + +   G  +  E+   +S + S +DE+   Y WDT + +                  + 
Sbjct: 325 LFNIGNGLPEALELWIDFSSRASNFDEKKCEYLWDTMEMKGKSIGSLYQMAKNDNPEKYN 384

Query: 289 SLFYH-HGKLIPKGLLASRFSDA-YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
                   + +   + A++ + A     +   Y        +    WY+   +  +    
Sbjct: 385 DWKKEKSSEAMKGAMTAAKPTHANIASLIHIKYSDRFVCADSKANVWYEFRGHRWHKMDD 444

Query: 347 TLDK---ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
             +    I+  +          +  ++ + +D N      +        + +       K
Sbjct: 445 ANELMRIISFELPEEFRVEINRLSAITGQSQDPNSQLTIKKCVDIQSKLQMDGFSQGVMK 504

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF--- 460
              +        S     LD +   LG +DG+ DL+ G     + + YI+ STG  +   
Sbjct: 505 MCKRLFLNEHFLS----KLDENRDLLGMEDGVCDLKLGIFRDGSPDDYISMSTGISYKAL 560

Query: 461 -VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
             E     E  + +   F +  +     R V   + GGN+ +R     G G +GKS   +
Sbjct: 561 SEEDRSVIECREFLKKLFPNPRIRKCALRMVSSCMQGGNRNKRIYICTGKGNNGKSVFFS 620

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
           L++Y FG   +       +   R      A P L R  G+R  +I E ++N++ N   +K
Sbjct: 621 LLEYIFGQYLIKFPREMCLAG-RAGNPSSARPELARAPGTRYGVIQEVHKNEKFNPGILK 679

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-AN 638
           +++G D    R  +     +    FT F++ NK   V   D A W R  +IPF+    + 
Sbjct: 680 ELSGNDSFFVRNLFEKG-RDIKPMFTIFMMANKPPGVPGSDQATWNRIRLIPFEATFLSE 738

Query: 639 RDASFAQKLET-------------KYT-LE---AKKW-FLKGVKAYISKGLDVDIPEVCL 680
           +D ++ +  E              +        A  W  ++  + Y  +GL    PE   
Sbjct: 739 QDENWIEDPELRREAKMFKADEHFEEKIPGLAHALLWLCVEDFRKYKEEGL--CEPEEVE 796

Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWE-------ESHSLAKSYSEYREQELNYDRKRI 733
            A  + R   DT + +I DC  +     E           L   Y E+ ++       R 
Sbjct: 797 AATAKMRARNDTIRKYIRDCLIVDREKKEDDEKTFLTVSELFNHYKEWHDENFPSYAVRK 856

Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFK 788
           +   +      K F   +K + I  +       +GL  K   E+++D+    D  
Sbjct: 857 TMTILKFR---KQFARAVKIQPINGKK-----FEGLSFK-EQENLEDDEGKGDED 902


>gi|190573868|ref|YP_001971713.1| hypothetical protein Smlt1886 [Stenotrophomonas maltophilia K279a]
 gi|190011790|emb|CAQ45410.1| putative phage-related protein [Stenotrophomonas maltophilia K279a]
          Length = 766

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 102/534 (19%), Positives = 178/534 (33%), Gaps = 54/534 (10%)

Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR-----FSDAYNKA 314
           Y  E+    WD  D    G       +       H        +A        ++     
Sbjct: 275 YPPEDAPEGWDAADAIAEGFDVATFLSHGPRLQMHDLADTDEPVAGSDESVWGTEDALAL 334

Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
            F+      + Y A   AW         +W     +   +     ++  + +  +  +  
Sbjct: 335 AFTRRYHRDWRYVA---AW-----GRWLVWDGQRWRTEDT-----LAATDLIRSVCRQTA 381

Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
               N                +  +       +   A    + T+D  D+    L    G
Sbjct: 382 VRADN----------PKVAAKLASSGTVSGVERLARADRRHAATTDEWDADPWLLNTPGG 431

Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMA 493
           ++DL+TG++    +   +TK T            +L  +       + +  Y  R VG A
Sbjct: 432 VVDLKTGRQRPHERADRMTKVTTA--TPSGECPTWLQFIDEVTGGDQALQAYLQRMVGYA 489

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           L G  +      + G G +GKS  +N +    G+        + +         +    +
Sbjct: 490 LTGATQEHALFFLYGTGANGKSVFVNTLATILGDYATNAPMDTFMETR----TDRHPTDM 545

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             L G+R V   ET +      +K+K +TGGD ++AR      + E    F  F+  N  
Sbjct: 546 AGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM-RQDFFEFFPQFKLFVAGNHK 604

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
             +RN D+A  RR  +IPF   +    RD    QKL          W ++G   +   G 
Sbjct: 605 PAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKL-LAERDGILAWAVQGCLDWQRHG- 662

Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
            +D P+  ++A EE  +  D    W+D+ C    N    +  L   + ++ E    +   
Sbjct: 663 RLDPPQRVVEATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKQWAEAAGEFT-- 720

Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK----PAFESVDDN 781
             S +     L  +G           +     R  +GL LK    PA+    DN
Sbjct: 721 -GSQKRFADLLLTRGLDK-------WRNGMGLRGFQGLGLKYPPAPAYTPYADN 766


>gi|57233571|ref|YP_180824.1| phage/plasmid DNA primase, putative [Dehalococcoides ethenogenes
           195]
 gi|57224019|gb|AAW39076.1| phage/plasmid DNA primase, putative [Dehalococcoides ethenogenes
           195]
          Length = 757

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 111/581 (19%), Positives = 205/581 (35%), Gaps = 55/581 (9%)

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
              +       +  +      +K     +E      W +   +      +++  + S   
Sbjct: 204 GRVIKKYGDSDAAFQCFLEEAAKCSPPLEEAELMTIWHS--AQRFFSKVQQQDGYVSPEV 261

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS-----LT 347
           ++    P   +   FSD     + + Y  G   Y+  T  + +   +           + 
Sbjct: 262 YND---PTSYMPGDFSDVGQAEVLAKYFSGELRYSPATH-FIRYTSHYWQESEPGAQAVA 317

Query: 348 LDKITASIMNFLVSMKEDVFDLSEE-PEDNNKNSKSPR---------------FWFNTDY 391
            +     +      ++  +  L+E   +D  +N+   +               F     Y
Sbjct: 318 HELTRRQLEEATKDLQSAMRLLTENGAQDILENASKAKAESLMNETQLEAYRAFLSAKAY 377

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKE 449
           +   +        TA   E+  +  I+   LD+    L       DL  G     + + +
Sbjct: 378 QSFAIRRRDSKNITATLKESRPMLEISPRDLDADCFLLCTPAATYDLRKGMTGAREHSPD 437

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
            +ITK T          Q + + +   F  ++E++DY     G+A +G    +  I   G
Sbjct: 438 DFITKMTSVSPSSKGE-QIWQNSLGLIFCGNQELIDYVQMICGLAAIGKVYVEALIIAYG 496

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            G +GKST  N I    G      +  +  +  R        P +  + G R++I +E  
Sbjct: 497 GGRNGKSTFWNAISRVLGLYSGNISADTLTVGCRR----NIKPEMAEVKGKRLLIAAEIQ 552

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           E   +N + +KQ+   D + A   Y + +S      T  +  N    V   DD  WRR +
Sbjct: 553 EGARLNDSTVKQLCSTDDVFAEKKYKDPFS-FTPCHTLVLYTNHLPKVSASDDGIWRRLV 611

Query: 629 VIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
           VIPFD  I       ++ + L          W ++G K  I+    + +P    +A  E 
Sbjct: 612 VIPFDAKIEGSSDIKNYGEYLYQNAGESILAWVIEGAKKVIALDYKIPVPVCVQQAITEY 671

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   D +  ++++ C++  +  E S SL ++Y  Y      Y R   ST      L+  G
Sbjct: 672 RSQNDWFGHFLEEKCELDASYRESSSSLYRAYRNYCVDTNEYIR---STTDFYSALEAAG 728

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDF 787
           +             K+KR   GL+LK       D+ +  DF
Sbjct: 729 YG--------RINVKNKRFFAGLRLKI------DDGDFEDF 755


>gi|256617080|ref|ZP_05473926.1| phage DNA polymerase [Enterococcus faecalis ATCC 4200]
 gi|257088357|ref|ZP_05582718.1| phage DNA polymerase [Enterococcus faecalis D6]
 gi|256596607|gb|EEU15783.1| phage DNA polymerase [Enterococcus faecalis ATCC 4200]
 gi|256996387|gb|EEU83689.1| phage DNA polymerase [Enterococcus faecalis D6]
          Length = 748

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 121/666 (18%), Positives = 228/666 (34%), Gaps = 68/666 (10%)

Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206
            +    P      +D  +  ++ +   F +F +  +   +       S+      +++ T
Sbjct: 111 RFHVYFPIETVADKDEYVNLKQQINEAFPYFDDNAMDAARLLFGTSNSEVEIYEGSKRVT 170

Query: 207 N---REITAFLSCFGEEFYNGSHDEWIP-VVMAVHHETRGSSKGKEIARRWSKQG-STYD 261
           +    ++ A       E   GS +  +  +   +        +   +    +++      
Sbjct: 171 DVLSEDLFADWESRLSEIGEGSRNSTMSHIAGKLIKRYGAKEETYHLFLEQAEKCNPPLP 230

Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
           +E     W++      G   K++  +     ++       L  + +SD     + +   +
Sbjct: 231 DEELKSIWNS--AVRFGKKVKQQEGYIPPEQYNK---DTELEPTDYSDVGQATVLAREYE 285

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM--------------KEDVF 367
               Y+  T            +++ +  + +A     +                 K+   
Sbjct: 286 CKLRYSPSTD---------YIVYNGSYWEESAPKSQAVAQALTERQLEEAETAIAKQTQE 336

Query: 368 DLSEEPEDN--------------NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE-AG 412
            +                      + + S   + +    ++   +    K  + +L+ A 
Sbjct: 337 MVKNGAFAILASVGPKKAVPMFNKEQAHSYELFESAQAYKKYAVKRRDDKYLSSALKVAR 396

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
            +  I   +LD +   L       DL TG       E YITK T          Q + D 
Sbjct: 397 PMLEIEQRILDVNEFLLNTPSATYDLRTGYTQDHKAEDYITKQTECDPSSNNE-QLWFDA 455

Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           ++  F   +E++DY    VG+A +G    +  I   G G +GKST  N+I    GN    
Sbjct: 456 LNTIFVGDQELIDYVQMIVGLAAIGKVYVEALIISYGEGRNGKSTFWNVISRVLGNYSGS 515

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
            +      Q R        P L    G R++I +E  E   +N + IKQ+   D + A  
Sbjct: 516 ISADILTSQIRR----NVKPELAEAKGKRLLIAAELEEGMRLNTSNIKQLCSTDEIAAEK 571

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLET 649
            Y + +     + T  +  N    V   D   WRR IVIPF   I       ++A  L  
Sbjct: 572 KYKDPF-RYVPTHTLVLYTNHLPKVGAIDKGTWRRLIVIPFLATIEGNKDVKNYADYLFE 630

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
                  KW L+G K  I+    + +P V  +A EE +   D    ++++CC+      E
Sbjct: 631 NAGGAVLKWILEGAKRVIAADYKLPVPRVVNEAIEEYKAANDWLGHFLEECCETDSEYVE 690

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
           +S  +   Y  +  +   Y R   S+      ++  GF             K  R IKGL
Sbjct: 691 KSGEVYSEYRAFCMRTGEYTR---SSADFYAAIENAGFA--------RHRNKKGRYIKGL 739

Query: 770 KLKPAF 775
           ++K  F
Sbjct: 740 RVKSEF 745


>gi|302035479|ref|YP_003795801.1| putative DNA primase' [Candidatus Nitrospira defluvii]
 gi|300603543|emb|CBK39873.1| putative DNA primase, P4 family (phage related) [Candidatus
           Nitrospira defluvii]
          Length = 763

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 99/570 (17%), Positives = 179/570 (31%), Gaps = 71/570 (12%)

Query: 219 EEFYNGSHDEWIPVVMAVHHETRGSSKGK-------EIARRWSKQGSTYDEENFNYKWDT 271
            +      D       A+ +    +           E           +D   F    + 
Sbjct: 240 PDRDAPGWDYADRASQAILNAGATTVAILMPPDDKPEGWDAADAIPEDFDVGGFLAVGER 299

Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK 331
                  +          + +               ++      F+      + Y A   
Sbjct: 300 MPVMRSVEETPSPDLLNGIDW--------------TTEDGLSTAFTRRYGEDWRYCA--- 342

Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
            W         +W+             ++ +      +                  +T  
Sbjct: 343 LW-----GKWLVWTGVRWNPD-----QVLYVSHLARGICRNAS----------LKADTPR 382

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
            +  +  ++   S  +   +    + T++  D+    L    G++DL TG+     ++  
Sbjct: 383 LKGKLASSATISSVEKIARSDPKHASTAEEWDADVWALNTPGGVVDLRTGRMRPHRRDDR 442

Query: 452 ITKSTGTPF--VEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
           +TK T              +   ++       ++M Y    VG  L G         + G
Sbjct: 443 MTKVTTATPQGNPDSACPTWRGFLTDVTGGDADLMAYLQLMVGYCLTGVTSEHALFFLYG 502

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            G +GKS  +N++    G+        + +         +    L  L G+R V   ET 
Sbjct: 503 TGANGKSVFVNVLTTILGDYAANAPMDTFME----ARTDRHPTDLAGLRGARFVSSIETE 558

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           +    N +K+K +TGGD ++AR      + E    F   I  N    +RN D+A  RR  
Sbjct: 559 QGRRWNESKVKAITGGDKVSARFM-RQDFFEYLPQFKLVIAGNHKPSIRNVDEAMKRRLH 617

Query: 629 VIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
           +IPF   I    RD    +KL  K       W ++G   +  +GL    P   + A EE 
Sbjct: 618 LIPFTVTIPPERRDGRLTEKL-LKERDGILAWAVEGCSRWQRQGLKP--PASVVSATEEY 674

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY--DRKRISTRTVTLNLKQ 744
            +  D    WI++ C + ++  E    L   + E+ E+   Y    KR S    T   ++
Sbjct: 675 FEAEDALGQWIEERCLLAKSHREGVSELFADWREWAERAGEYVGSVKRFSELMATRKFEK 734

Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
               GG             R I G+ L+P 
Sbjct: 735 CRLTGG------------ARAIAGIALRPK 752


>gi|309781007|ref|ZP_07675746.1| prophage LambdaMc01, DNA primase, P4 family [Ralstonia sp.
           5_7_47FAA]
 gi|330824596|ref|YP_004387899.1| phage/plasmid primase, P4 family [Alicycliphilus denitrificans
           K601]
 gi|308920310|gb|EFP65968.1| prophage LambdaMc01, DNA primase, P4 family [Ralstonia sp.
           5_7_47FAA]
 gi|329309968|gb|AEB84383.1| phage/plasmid primase, P4 family [Alicycliphilus denitrificans
           K601]
          Length = 766

 Score =  319 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 99/534 (18%), Positives = 173/534 (32%), Gaps = 54/534 (10%)

Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR-----FSDAYNKA 314
           Y  E     WD  D    G       T       H        + S       ++     
Sbjct: 275 YPPEEAAEGWDVADAIAEGFDVATFLTHGPRLQMHDVADDVDPVVSSDESVWGTEDALAL 334

Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
            F+      + Y A    W         +W     +   +     ++  + +  +  +  
Sbjct: 335 SFTRRYHRDWRYVA---GW-----GKWLVWDGQRWRTEDT-----LAATDLIRSVCRQTA 381

Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
               N                +          +   A    + T+D  D+    L    G
Sbjct: 382 VRADN----------PKVAAKLASAGTVGGVERLARADRRHAATTDEWDADPWLLNTPGG 431

Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMA 493
           ++DL+TG+     +   +TK T            +   +       +E+  Y  R VG A
Sbjct: 432 VVDLKTGRMRTHERADRMTKITTA--TPSGDCPTWRQFIDEVTGGDQELQSYLQRMVGYA 489

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           L G  +      + G G +GKS  +N +     +        + +         +    +
Sbjct: 490 LTGSTQEHALFFLYGTGANGKSVFVNTLATILRDYATNAPMDTFMETR----TDRHPTDM 545

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             L G+R V   ET +      +K+K +TGGD ++AR      + E    F  F+  N  
Sbjct: 546 AGLRGARFVAAIETEQGKRWAESKLKNLTGGDKISARFM-RQDFFEFFPQFKLFVAGNHK 604

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
             +RN D+A  RR  +IPF   +    RD +  QKL          W ++G   +   G 
Sbjct: 605 PAIRNIDEAMKRRLHLIPFTITVPPERRDKNLQQKL-LAERDGILAWAVQGCLDWQRHG- 662

Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
            +  P+  + A EE  +  D    W+D+ C    N    +  L   + ++ E    +   
Sbjct: 663 RLSPPQRVVDATEEYFEAEDALGRWLDERCVREPNAKSLTAELFNDWKQWAEASGEF--- 719

Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK----PAFESVDDN 781
             + R  +  L  +G           +     R  +G+ LK    PA+    DN
Sbjct: 720 VGAQRRFSDLLITRGLDK-------WRNGMGVRGFQGIGLKHPPTPAYTPYADN 766


>gi|294817426|ref|ZP_06776068.1| Putative DNA primase/helicase [Streptomyces clavuligerus ATCC
           27064]
 gi|294322241|gb|EFG04376.1| Putative DNA primase/helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 532

 Score =  319 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 92/482 (19%), Positives = 176/482 (36%), Gaps = 37/482 (7%)

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
           G+L    SD  N  +F       F +               Y W+     +         
Sbjct: 75  GVLPDSLSDRGNAKLFVSLYGRDFRHVP---------GLGWYRWNKYRWDLDED------ 119

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV-EENSKAKSTAQSLEAGSIFSITS 419
                ++   E  E   +     RF  +   R +      +  K+     +A     ++ 
Sbjct: 120 --DGVMWAAGEMAEMLAETDIRGRFTDSALRRHRRRALSTAGIKAMLAQAKAAPGMVLSP 177

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT-KSTGTPFVEGEPSQEFLDLVSGYFE 478
            +LD+    L   +G++DL TG    P  E +   +ST            +   ++  F 
Sbjct: 178 SMLDADPYALCTPEGVIDLTTGAVTPPDPEKHYHSRSTSVAARPRAT-PRWKRFLADCFG 236

Query: 479 S----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
                EE++D+    +G ++ G   AQ    + G G +GKS L++++    G+       
Sbjct: 237 DDAEGEEMIDFLHELLGYSITGDVGAQVLPFLYGQGKNGKSVLLDVMVKLLGDYADAAPP 296

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
              + +            L  L G RI++ SE    D  + A++K +TGGD + AR    
Sbjct: 297 GFLMARPFE----GHPTDLAELHGRRIIVCSELKPGDRFDEARVKLLTGGDRIKARRM-R 351

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYT 652
             +     +   +++ N    V     A+WRR  ++PF++ + +     + A  L T+  
Sbjct: 352 QDFFSFGPTHKLWLLGNHRPEVGTGGYAFWRRMKLLPFERVVDDDRKVDNLADVLVTEEG 411

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
                W ++G + Y++   D+  PE    A     +  D    ++ +CC +G ++  E  
Sbjct: 412 PGILNWLVEGSRRYLTGPRDLTGPERVRTATTAYAETEDHTGRFLSECCTVGPSMRAEQT 471

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
            L  SY ++ + E        ++R     ++      GI   K       ++   G+ L 
Sbjct: 472 LLYASYRDWCQLEGA---NPATSRAFAARVRD---TVGISSPKEMILSNQRKFYPGIGLN 525

Query: 773 PA 774
             
Sbjct: 526 AE 527


>gi|17545558|ref|NP_518960.1| hypothetical protein RSc0839 [Ralstonia solanacearum GMI1000]
 gi|17427851|emb|CAD14541.1| probable bacteriophage-related protein [Ralstonia solanacearum
           GMI1000]
          Length = 765

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 126/722 (17%), Positives = 231/722 (31%), Gaps = 75/722 (10%)

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
                D+ ++  +      D    L  T  VR           R  KE        E+ +
Sbjct: 95  GTLGVDVQTEFPRVLARAADLLG-LASTQPVR-----------RKRKEPPTDDLGPETAK 142

Query: 124 GHLDILGCGQY--FVAYNIHPKTKKEYT-W------TTPPHRFKVEDTPLLSEEDVEYLF 174
               +   G+    V     P   KE+  W        PP    + + P L+      L 
Sbjct: 143 WDY-LDAAGRLIGVVYRYDPPGRGKEFRPWDAKRRKMAPPDPRPLYNQPGLASATQVVLV 201

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
           +  +     +       I + T  +  N      + +         + +     W     
Sbjct: 202 EGEKCAQALIDA----GIVATTAMHGANAPVEKTDWSPLAGKAVLIWPDRDKPGWEYADR 257

Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH 294
           A     +  +    I      +   +D  +   +   FD         +      +    
Sbjct: 258 ASQAILQAGALLVAILLPPDDKPEGWDAADAIEE--GFDVAGYLAAGARVPVVPEVDDSV 315

Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
              + +G+     ++      F+      + Y +    W         +W+         
Sbjct: 316 SADVLEGV--DWETEDGLATAFTRRYGDDWRYCS---LW-----GKWLVWTGVRWNPDQL 365

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
           +  ++  +   +              ++  F   T  ++  +  +S   S  +   +   
Sbjct: 366 L--YITHLSRGI-------------CRAASFKAETPRQKAKLASSSTIASVEKIARSDPK 410

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
            + T+D  D+    L    G++DL TGQ     +E  +TK T            +   +S
Sbjct: 411 HAATADEWDADVWALNTPGGVVDLRTGQLRAHRREDRMTKVTTA--TPKGDCPTWRQFLS 468

Query: 475 GYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
                  E+  Y  R  G AL G  +      + G G +GKS  +N +    G+  V  A
Sbjct: 469 EVTGGDVELQAYLQRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYAVNAA 528

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
             + +       A +    +  L G+R V   ET +      +K+K +TGGD ++AR   
Sbjct: 529 MDTFMETR----ADRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM- 583

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
              + E    F  F+  N    +RN D+A  RR  +IPF   +    RD +  QKL    
Sbjct: 584 RQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTVTVPPARRDKTLQQKL-LAE 642

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                 W ++G   +   G  +D P+  L A EE  +  D    W+D+ C    N    +
Sbjct: 643 RDGILAWAVQGCLDWQRLG-RLDPPQQVLDATEEYFEAEDALGRWLDERCVREINAKTLT 701

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
             L   + ++ +    +     S R  +  L  +G           +     R  +G+ L
Sbjct: 702 AELFNDWKQWADSAGEF---VGSQRRFSDLLITRGVEK-------WRNTAGLRGFRGVSL 751

Query: 772 KP 773
           K 
Sbjct: 752 KH 753


>gi|326446240|ref|ZP_08220974.1| putative DNA primase/helicase [Streptomyces clavuligerus ATCC
           27064]
          Length = 507

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 92/482 (19%), Positives = 176/482 (36%), Gaps = 37/482 (7%)

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
           G+L    SD  N  +F       F +               Y W+     +         
Sbjct: 50  GVLPDSLSDRGNAKLFVSLYGRDFRHVP---------GLGWYRWNKYRWDLDED------ 94

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV-EENSKAKSTAQSLEAGSIFSITS 419
                ++   E  E   +     RF  +   R +      +  K+     +A     ++ 
Sbjct: 95  --DGVMWAAGEMAEMLAETDIRGRFTDSALRRHRRRALSTAGIKAMLAQAKAAPGMVLSP 152

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT-KSTGTPFVEGEPSQEFLDLVSGYFE 478
            +LD+    L   +G++DL TG    P  E +   +ST            +   ++  F 
Sbjct: 153 SMLDADPYALCTPEGVIDLTTGAVTPPDPEKHYHSRSTSVAARPRAT-PRWKRFLADCFG 211

Query: 479 S----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
                EE++D+    +G ++ G   AQ    + G G +GKS L++++    G+       
Sbjct: 212 DDAEGEEMIDFLHELLGYSITGDVGAQVLPFLYGQGKNGKSVLLDVMVKLLGDYADAAPP 271

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
              + +            L  L G RI++ SE    D  + A++K +TGGD + AR    
Sbjct: 272 GFLMARPFE----GHPTDLAELHGRRIIVCSELKPGDRFDEARVKLLTGGDRIKARRM-R 326

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYT 652
             +     +   +++ N    V     A+WRR  ++PF++ + +     + A  L T+  
Sbjct: 327 QDFFSFGPTHKLWLLGNHRPEVGTGGYAFWRRMKLLPFERVVDDDRKVDNLADVLVTEEG 386

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
                W ++G + Y++   D+  PE    A     +  D    ++ +CC +G ++  E  
Sbjct: 387 PGILNWLVEGSRRYLTGPRDLTGPERVRTATTAYAETEDHTGRFLSECCTVGPSMRAEQT 446

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
            L  SY ++ + E        ++R     ++      GI   K       ++   G+ L 
Sbjct: 447 LLYASYRDWCQLEGA---NPATSRAFAARVRD---TVGISSPKEMILSNQRKFYPGIGLN 500

Query: 773 PA 774
             
Sbjct: 501 AE 502


>gi|134297351|ref|YP_001121086.1| hypothetical protein Bcep1808_3261 [Burkholderia vietnamiensis G4]
 gi|134140508|gb|ABO56251.1| phage/plasmid primase, P4 family [Burkholderia vietnamiensis G4]
          Length = 775

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 156/443 (35%), Gaps = 37/443 (8%)

Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
           Y         W+    +         ++    +  +  E               ++    
Sbjct: 355 YVALWGKWVFWTGKRWQ-----TEETLAAHHLMRQICREAA----------LKADSHRVA 399

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
             +  +       +   +    + T+D  D+    L    G+++L+ G      +   +T
Sbjct: 400 AKLASSGTVAGLERLARSDRRHAATADEWDADPWLLNTPGGVVNLKNGVLRSHDRLDRLT 459

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
           K T            +   +       + +  Y  R  G AL G  +      + G G +
Sbjct: 460 KITTA--TPAGDCPTWRQFIHEVTGGDQALQAYLARMAGYALTGSTREHALFFLYGTGAN 517

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
           GKS  +N +    G+        + +         +    +  L G+R V   ET +   
Sbjct: 518 GKSVFVNTLATILGDYATNAPMDTFMETR----TDRHPTDMASLRGARFVAAIETEQGRR 573

Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
              +K+K +TGGD ++AR      + E    F   +  N    +RN D+A  RR  +IPF
Sbjct: 574 WAESKVKSLTGGDKISARFM-RQDFFEFMPQFKLIVAGNHKPAIRNIDEAMKRRLHLIPF 632

Query: 633 DKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
              +    RD    QKL          W ++G   +  +G  +D P+  L A +E  +  
Sbjct: 633 TITVPPERRDKHLQQKL-LAERDGILAWAVQGCLEWQRQG-RLDPPQQVLDATDEYFEEE 690

Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
           D    ++D+ C       E   ++ + + E  E+   Y     ++R +T  L  +GF   
Sbjct: 691 DAIGEFLDEDCQQSPVAREAISAIYQRWRERAERRGEY---VGTSRWLTQQLINRGF--- 744

Query: 751 IKREKIEKEWKSKRIIKGLKLKP 773
             R ++    K+   + GL LKP
Sbjct: 745 -ARTRLHGGAKA---LSGLSLKP 763


>gi|239904738|ref|YP_002951476.1| hypothetical protein DMR_00990 [Desulfovibrio magneticus RS-1]
 gi|239794601|dbj|BAH73590.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 606

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 184/479 (38%), Gaps = 27/479 (5%)

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW--YKKDKNNVYIWSLTLDKITASIMN 357
           + + A   +D  N   F       F+Y  ++  W  +  DK       L    +   +M 
Sbjct: 121 RPIFAYPLTDLGNAQKFYRVYNKFFMYDHESAQWVGWDNDKKRWLTGRLARQLMMRFVMK 180

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
            +  +      L      N +               +   +NS+ K+  + +       +
Sbjct: 181 LVDELYRQAKSLRPLRTRNGEEVTPEE----ALAWAKATSQNSRKKAVLEMVRDLPKVRV 236

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY- 476
               LDS    LG  +G+LDL TG  ++   EL IT+     +     +  F   +    
Sbjct: 237 AKAELDSDPYLLGVANGVLDLRTGTLIENRPELRITRYASAAYRPDAEAPIFQGFMRQIC 296

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
              ++++D+     G AL G  K   F  + G G +GKSTL+ +  Y  G   +     +
Sbjct: 297 LGRQDLVDFLQEVFGYALSGLIKEHAFFILVGTGANGKSTLVEIFLYLLGEYGIGMPGHA 356

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
            +  N    +      + R  G R+  I+E N+    + + +K+   GD MTAR   G  
Sbjct: 357 FLKSN----SRAIRNDIARWPGIRLGTIAEANDGMSFDESLLKRSVAGDVMTARFI-GKE 411

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDASFAQKLETKYTLEA 655
           Y +       F+  N    +   D+  +RR +VIPFD    A  D    +KL        
Sbjct: 412 YFDFHPVAKFFLSVNTLPKITGADNGIYRRLVVIPFDGDFQATMDRDLPEKL-KAEIDGI 470

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
             W ++G   + ++G  +  P+  ++A +  R   DT Q+++D+CC +  N+      L 
Sbjct: 471 LAWAVQGFLRWQARG-HLVKPDCVVEACKAYRAEMDTVQSFLDECCILDPNVSTPLGVLY 529

Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
           ++Y  + +          +       + QKGF     ++     W+     KG+ LK A
Sbjct: 530 EAYKNWAK---GAVVDPANLHLFGTLMGQKGF-----KKVKSGTWR----WKGVALKAA 576


>gi|299067595|emb|CBJ38799.1| putative DNA primase, phage/plasmid [Ralstonia solanacearum CMR15]
          Length = 765

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 97/469 (20%), Positives = 166/469 (35%), Gaps = 45/469 (9%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           ++      F+      + Y +    W         +W+         +          V 
Sbjct: 327 TEDGLATAFTRRYGDDWRYCS---LW-----GKWLVWTGVRWNPDQLLY---------VT 369

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            LS          ++  F  +T  ++  +  +S   S  +   +    + T+D  D+   
Sbjct: 370 HLSRGIC------RAASFKADTPRQKAKLASSSTIASVEKISRSDPKHAATADEWDADVW 423

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
            L    G++DL TGQ     +E  +TK T      G     +   ++       E+  Y 
Sbjct: 424 ALNTPGGVVDLRTGQLRAHRREDRMTKITTA--TPGGDCPTWRQFLAEVTGGDAELQAYL 481

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
            R  G AL G  +      + G G +GKS  +N +    G+  V  A  + +       A
Sbjct: 482 QRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYAVNAAMDTFMETR----A 537

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
            +    +  L G+R V   ET +      +K+K +TGGD ++AR      + E    F  
Sbjct: 538 DRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM-RQDFFEFFPQFKL 596

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664
           F+  N    +RN D+A  RR  +IPF   +    RD    QKL          W ++G  
Sbjct: 597 FVAGNHKPAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKL-LAERGGILAWAVQGCL 655

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
            +   G  +  P+  L A EE  +  D    W+D+ C    N    +  L   + ++ E 
Sbjct: 656 DWQRLG-RLQPPQQVLDATEEYFEAEDALGRWLDERCVREANAKTLTAELFNDWKQWAEA 714

Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
              +     S +     L  +G           +     R  +G+ LK 
Sbjct: 715 AGEFA---GSQKRFADLLLIRGVEK-------WRNTAGLRGFRGVGLKH 753


>gi|302538856|ref|ZP_07291198.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302447751|gb|EFL19567.1| conserved hypothetical protein [Streptomyces sp. C]
          Length = 548

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 179/479 (37%), Gaps = 38/479 (7%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
             +D  N  +F+      F +          +    Y+W     K T          K  
Sbjct: 89  NLTDRGNAKLFAHLHNHRFRHV---------EGLGWYVWDEYRWKRTGGE-------KAA 132

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
           ++   +  E+   +     F      + R+     S  K+     +A    ++  D LD 
Sbjct: 133 IWAAGDMAEEMPLHDPRGHFTDRELAQHRKRAMSTSGVKAMLSQAKASPELALDPDTLDG 192

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES----E 480
               L    G++DL TG+  KP     +         E  P+  F   ++  F      +
Sbjct: 193 DKYALCTPAGVVDLRTGELRKPDPLRDLHSRATYLAPEASPTPRFARFLTETFGDDDKGK 252

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           E++ +    +G ++ G    Q    + G+G +GKS LM+++    G+   +      + +
Sbjct: 253 EMITFVHLLLGYSITGDVGGQVLPFLYGIGANGKSALMDIVIKILGDYADVAPPGFLMER 312

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
            +     + +  L  L G R+ + SE   +D+ + A++K +TGGD + AR      Y   
Sbjct: 313 GKF---NEHSTELTELHGRRLFVCSELKPHDKFDEARVKLLTGGDRLKARRM-RQDYFSF 368

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTLEAKKW 658
             +   +++ N    V     A+WRR  +IPFDK + +     + A++L          W
Sbjct: 369 EPTHKLWLLGNHRPEVGTGGHAFWRRIRLIPFDKVVPDHRKIDNLAEELVNHEGPGILHW 428

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE------NLWEESH 712
            ++G  AY+     +  P V   A +      D    ++ +CC  G+      +   E  
Sbjct: 429 MIQGAMAYLRTKPSLTGPTVVRTATQAYATTEDHIGRFLAECCTSGDGGEEPRDFKVEQG 488

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           +L ++YS + ++      +  +TR     ++      GI           ++   GL L
Sbjct: 489 ALYRAYSTWCQE--GEGLRPATTRAFATRIRA---EVGISSPGEMLRSNGQKFYPGLAL 542


>gi|152981706|ref|YP_001354386.1| hypothetical protein mma_2696 [Janthinobacterium sp. Marseille]
 gi|151281783|gb|ABR90193.1| bacteriophage-related protein [Janthinobacterium sp. Marseille]
          Length = 758

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 90/472 (19%), Positives = 168/472 (35%), Gaps = 50/472 (10%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           ++      F+      + Y A    W         +W+           + ++ +     
Sbjct: 321 TEDGLSTAFTRRYGQDWRYCA---LW-----GKWLVWTGVRWN-----ADQMLYVSHLAR 367

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            +        +          +  ++  +  +S   +  +   +    + +++  D+ + 
Sbjct: 368 GICRNASLKAE----------SPRQKAKLASSSTISAVEKIARSDPKHASSAEEWDADTW 417

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
            L    G++DL TG+  +  ++  +TK +            +   ++       +++ Y 
Sbjct: 418 ALNTPGGVVDLRTGRMREHRRDDRMTKVSTA--TPKGDCPTWHGFLADVTGGDADLIAYL 475

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
              VG  L G         + G G +GKS  +N+I    G+        + +        
Sbjct: 476 QLMVGYCLTGITSEHALFFLYGTGANGKSVFVNVITTILGDYAANAPMDTFMD----ARN 531

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
            +    L  L G+R V   ET +    N +K+K +TGGD ++AR      + E    F  
Sbjct: 532 DRHPTDLAGLRGARFVSSIETEQGRRWNESKVKAITGGDKVSARFM-RQDFFEYVPQFKL 590

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664
            I  N    +RN D+A  RR  +IPF   I    RD     KL  K       W ++G  
Sbjct: 591 VIAGNHKPSIRNVDEAMKRRLHLIPFTVTIPPEKRDGRLTDKL-LKERDGILAWAVEGCS 649

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
            +  +GL    P   + A EE  +  D    WI++ C + +   E    L   + E+ E+
Sbjct: 650 RWQQQGLKP--PASVVSATEEYFEAEDALGQWIEERCLLAKTSREGVSDLFSDWREWAER 707

Query: 725 ELNY--DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
              +    KR S    T   ++    GG+            R + GL L+P 
Sbjct: 708 AGEFVGSVKRFSELMATRKFEKCRLTGGV------------RGLTGLSLRPK 747


>gi|48697531|ref|YP_024889.1| gp49 [Burkholderia phage BcepB1A]
 gi|47717501|gb|AAT37747.1| gp49 [Burkholderia phage BcepB1A]
          Length = 919

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 102/504 (20%), Positives = 195/504 (38%), Gaps = 33/504 (6%)

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
            ++                 ++  N +          +Y ++ + WY+        W   
Sbjct: 439 RAMLSAASSQPLTPGAHRECTEFGNVSRLMDKYGDTLMYVSEIEQWYQ--------WDGM 490

Query: 348 LDKITASIMNFLVSMK-EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
                A+    L  +  + ++ +++E  D        R         ++ ++ +  K+  
Sbjct: 491 RW--NAATPEQLQFLATQTIYSIAQEARDEENEEVRVRL----AQWARDSQKTAMVKNIV 544

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
               A       +  LD+  R++G  + I+DL+TG  + P +   IT+ T   +     +
Sbjct: 545 IGARAEPRVFARAANLDADVRYIGAPNCIIDLQTGAALAPDRNARITQYTAVQYNPAADA 604

Query: 467 QEFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
             F   +   +F++ E++ +F R +G ALLG  K    +   G G +GKST+MN I+   
Sbjct: 605 PCFKQTIREAFFDNIELIVFFKRLMGYALLGNPKQSWLVIPYGHGANGKSTIMNAIQRVL 664

Query: 526 GNQYVINAEASDIMQNRPPEA--GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
           G+     +  +         +  G     L+RL  +R+++ISE  EN  +  A +K +TG
Sbjct: 665 GDYCRTASSDTFTSSEASRSSSAGGPREDLVRLRSTRMLLISEVEENSHLREAIVKSLTG 724

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
            D + AR        E    F P +  N    ++  D+  WRR ++IPF++     D + 
Sbjct: 725 DDTIVARGVQAKASVEYKPRFVPIMSTNHKPVIKGSDNGIWRRIMMIPFERNFRE-DPNI 783

Query: 644 AQKLETKYTL-----EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
            + ++    +        +W ++G   Y   G  V +P +  +A +E R+  D    WI+
Sbjct: 784 PEDVDRPEKIAAESEGVLRWLVEGAVEYQQFG--VTVPHIIREATDEYRKDMDLLSGWIE 841

Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK-QKGFIGGIKREKIE 757
              +   + +     L  S+  Y        R   +   +   L  +KGF          
Sbjct: 842 SRLEFDPDAFVTPQDLFTSWQSYATPIGLM-RFVSTPVALGRKLAGRKGFKRAQ-----N 895

Query: 758 KEWKSKRIIKGLKLKPAFESVDDN 781
                 R   G++LK A E V + 
Sbjct: 896 IGGMRGRCFVGVRLKTAAEVVFNG 919


>gi|273810442|ref|YP_003344913.1| P4 family phage/plasmid primase [Xylella phage Xfas53]
 gi|257097817|gb|ACV41123.1| P4 family phage/plasmid primase [Xylella phage Xfas53]
          Length = 845

 Score =  316 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 179/496 (36%), Gaps = 51/496 (10%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA-SIMNFLVSMKEDV 366
           +DA N    +       +             N   +W+    +         +  +   +
Sbjct: 370 TDAANAGRIAKRHGKQLM----------WTGNRWLVWNDRYWESDPVGAHALMADLPALI 419

Query: 367 FDLSEE----PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
              +E+      D                      E   A  T + L       +  + L
Sbjct: 420 RAEAEQWRLKATDTEDGKAKNEKIAAALDAWSKKSEMGSAIETLERLLKKR-LRVPQEQL 478

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF----- 477
           D++   L   +G +DL TG       E YIT+     F     + EF+  ++        
Sbjct: 479 DTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEFITTLARITCEYGE 538

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
            S+ +  +  R  G    G  + Q+F  + G G +GKSTL++LI    G    + A    
Sbjct: 539 SSKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYSGVAAPG-L 597

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +     P+   A   +  L G R+V   E+ E + +    +KQ TGGD + AR  YG  +
Sbjct: 598 LTGKNGPQHPNA---IADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLKARYLYGE-F 653

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFAQ 645
            E   +    ++ N    ++  D   WRR ++IPF                  RD   A+
Sbjct: 654 FEFKPTHKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGKYLRDMRIAE 713

Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
           KL T        W + G   +   GL    P++ L A E+ ++  D    +ID+ C++G 
Sbjct: 714 KLAT-EREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQFIDEECELGA 770

Query: 706 NLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEK 758
           +  E+  +     L  +Y+++ +         +S       LK++  GF        +E 
Sbjct: 771 DKEEKLSTPMGGGLYPAYTQWCKASG---VCALSKTRFLDGLKRRVPGFKKKYVDRIVEG 827

Query: 759 EWKSKRIIKGLKLKPA 774
           +     +I G+ L  A
Sbjct: 828 KRHKFTVIIGVALVNA 843


>gi|71900480|ref|ZP_00682610.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
 gi|71729720|gb|EAO31821.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
          Length = 845

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 176/496 (35%), Gaps = 51/496 (10%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA-SIMNFLVSMKEDV 366
           +DA N    +       +             N   +W+    +         +  +   +
Sbjct: 370 TDAANAGRIAKRHGKQLM----------WTGNRWLVWNDRYWESDPVGAHALMADLPALI 419

Query: 367 FDLSEE----PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
              +E+      D                      E   A  T + L       +  + L
Sbjct: 420 RAEAEQWRLKATDTEDGKAKNEKIAAALDAWSKKSEMGSAIETLERLLKKR-LRVPQEQL 478

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF----- 477
           D++   L   +G +DL TG       E YIT+     F     + EF+  ++        
Sbjct: 479 DTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEFITTLARITCEYGE 538

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
            S+ +  +  R  G    G  + Q+F  + G G +GKSTL++LI    G    + A    
Sbjct: 539 SSKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYSGVAAPG-L 597

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +     P+   A   +  L G R+V   E+ E + +    +KQ TGGD + AR  YG  +
Sbjct: 598 LTGKNGPQHPNA---IADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLKARYLYGE-F 653

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQ 645
            E   +    ++ N    ++  D   WRR ++IPF                  RD   A+
Sbjct: 654 FEFKPTHKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGKYPRDMRIAE 713

Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
           KL          W + G   +   GL    P++ L A E+ ++  D    +ID+ C+ G 
Sbjct: 714 KL-AAEREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQFIDEECETGV 770

Query: 706 NLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEK 758
              E+  +     L  +Y+++ +         +S       LK++  GF        +E 
Sbjct: 771 EKEEKLSTPMGGGLYPAYTQWCKASG---VCALSKVRFLDGLKRRVPGFKKKYVDRIVEG 827

Query: 759 EWKSKRIIKGLKLKPA 774
           +     +I G+ L  A
Sbjct: 828 KRHKFTVIIGVSLVNA 843


>gi|227498327|ref|ZP_03928477.1| prophage protein [Acidaminococcus sp. D21]
 gi|226903789|gb|EEH89707.1| prophage protein [Acidaminococcus sp. D21]
          Length = 747

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 118/677 (17%), Positives = 220/677 (32%), Gaps = 62/677 (9%)

Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVE---DTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
           VA  I P             R +     + P +++E      K       P   +     
Sbjct: 88  VAMAIVPSRNHMKPKDGKCARPRFHVYFEIPEITDEPCYTELKRAVYHAYPFFDEAALDA 147

Query: 193 PSKTW------TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHHETRGSS 244
               +          N + T  ++             G  +  +       +        
Sbjct: 148 ARFIYGCPAEKVLWQNGKMTIDQVLKAREAGIHSIPQGQRNNTMSRFAGRVIKRYGATER 207

Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG-LL 303
                     K      +   N  W +      G+   ++  + S   ++     +G L 
Sbjct: 208 AYSIFLEEAEKCDPPLADAELNKIWQS--AVRFGEKIARQDGYISPDQYNNDFARQGSLK 265

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI--------WSLTLDKITASI 355
              +SD     +          YT +T  + + +                  L+   A  
Sbjct: 266 PEDYSDIGQAKVLKREYGDELRYTENTD-FLRYNGIYWAESHQEAIGAAEEFLELQLADA 324

Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS--------------- 400
            + + + ++ + ++    E  +K  +          ++      +               
Sbjct: 325 RDQMEAGRKALQEMGVAAELIDKGGRMLEKVIEGSQQKAFQSYQAALAYYAFVMKRRDMR 384

Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGT 458
              S  Q+L+   +  I    LD+    L       DL  G   +     E YITK T  
Sbjct: 385 YIISALQALKPMLLIPI--QALDADEFLLNTPSFTYDLRQGMAGRRNHRPEDYITKCTAV 442

Query: 459 PFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
              E   +  +   +  +F   +E++DY     G+  +G    +  +   G G +GKST 
Sbjct: 443 DPGEEGET-VWQQALDEFFTGDQELIDYAQEICGLMAIGKVYVEALVIAYGDGRNGKSTY 501

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            N I    G+     +  +     +        P +  L G R+VI +E  E   ++ + 
Sbjct: 502 WNSIARVLGSYCGGISADALTANCKR----NIKPEMAELKGKRMVIAAEMEEGVRLSTSV 557

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           +KQ+   D +     Y   +     + T  +  N    V   D+  WRR IVIPF     
Sbjct: 558 LKQLCSTDEVGGEKKYKTPF-TFVPTHTLVLYTNHLPRVGASDEGTWRRLIVIPFKAQFE 616

Query: 638 N--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
                 ++A  L         +W ++G +  I+    + +P+    A +E R   D  + 
Sbjct: 617 GHGEIKNYADYLVEAAGPAILRWIIEGAEKVIASEYHLTMPKCVRDAIQEYRGQNDWLRH 676

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           +++DCCD+  +  E+S +L  +Y  Y +Q   Y R   ST      L++ GF        
Sbjct: 677 FLEDCCDVDPSCQEKSGALYTAYRLYCQQMNEYTR---STTDFYGALEKAGF-------- 725

Query: 756 IEKEWKSKRIIKGLKLK 772
             ++ K+   I GLKLK
Sbjct: 726 DRRKRKAGYFIYGLKLK 742


>gi|24575081|gb|AAL06652.1| putative primase [Streptomyces globisporus]
          Length = 509

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 86/488 (17%), Positives = 172/488 (35%), Gaps = 35/488 (7%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
                  G + +  +D  N  +F    +  F +          +    Y W     K   
Sbjct: 43  AATAWEAGEIPASLTDRGNAKLFVRLYRDQFRHV---------EGLGWYSWDGYRWKRAG 93

Query: 354 SIMNFLVSMKEDVFDLS-EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
                L +  E   ++   +P     + +         + ++     +  K+     +A 
Sbjct: 94  GEKAALWAAGEMAEEMPGSDPRGLFTDREL-------HHHKRRTLSTTGMKALLTQAKAS 146

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
              S+  D LD     L   DG++DL  G+  KP           +   +  P+  +   
Sbjct: 147 PDLSLDPDTLDGDPYALCTPDGVVDLRNGRMRKPDPTRDFHSRATSASPQDIPTPRWHRF 206

Query: 473 VSGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
           +   F S+    E++D+    +G ++ G   AQ    + G G +GKS L++++    G+ 
Sbjct: 207 LEDTFGSDAEGREMIDFLHLLLGYSITGDVGAQVLPFLHGQGKNGKSVLLDVMIQILGDY 266

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                    + +       + +  L  L G R+++ SE   ND  + A+++ +TGGD + 
Sbjct: 267 ADAAPPGFLMDRG---AYSEHSTELTELHGRRLIVCSELKPNDRFDEARVRLLTGGDKIK 323

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQK 646
           AR      Y     +   +++ N    V     A+WRR  ++PF++ + +     + A +
Sbjct: 324 ARRM-RQDYFSFTPTHKLWLLGNHRPEVSTGGFAFWRRIRLLPFERIVPDERKIDNLAVE 382

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE- 705
           L          W  +G + Y++    +  P+    A        D    ++ +CC     
Sbjct: 383 LVQDEGPGILHWLTEGARRYLATRDTLAGPDRVRIATSAYANTEDHIGRFLAECCLHDPE 442

Query: 706 --NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
              L  E   L  SYS +         +  + R     ++Q     G+       +   +
Sbjct: 443 NSELRVEQGLLYTSYSTWCAHS--EGIRPGTARAFATRVRQ---EVGLASPADMIKSNGR 497

Query: 764 RIIKGLKL 771
           +    L L
Sbjct: 498 KFYPNLAL 505


>gi|51870034|ref|YP_073585.1| predicted ATPase [Lymphocystis disease virus - isolate China]
 gi|51858242|gb|AAU10926.1| predicted ATPase [Lymphocystis disease virus - isolate China]
          Length = 865

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 112/650 (17%), Positives = 201/650 (30%), Gaps = 80/650 (12%)

Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
             ++ ++   YL  F       + K                 + T      +L     E 
Sbjct: 218 LTIMPQDKEPYLISFKNVKPKLIDKILSRKA------EAILNEETRPSKLKYLINLLPEE 271

Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
                D W+     V   T GS +G ++   +SK+   Y+E+     W            
Sbjct: 272 CADDRDVWLETGFCVWQITDGSIEGYDVWTSFSKKSEKYNEDECFDLW-------YRQMR 324

Query: 282 KKRSTFTSLFYHHGKLIPKGLLAS-------------RFSDAY-NKAMFSIYKKGHFLYT 327
               T  SL++   K   +G                   S     K +   +       +
Sbjct: 325 PNDFTIASLYWLIKKYNSEGFADYVRLYECPPSKYYTDGSHVGVAKIVHHHFGSEFKCVS 384

Query: 328 ADTKAWYKKDKNNVYIWS---LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS-- 382
                WY+ D                I+ S    L ++   +  + +  +    + K   
Sbjct: 385 IKNHVWYRYDGVTWAECHVGVDLRRLISDSKAPILQTLDRQIKIVDDCLKGEETDEKYYQ 444

Query: 383 -------------PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
                         +        ++++       S  +  E      + +  +DS    +
Sbjct: 445 WQEELAQLTLEELEKLMDRLFKIKKSLRMTQFKNSVMRECEELFYDPLFAQKIDSDPYLI 504

Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEG---------------EPSQEFLDLVS 474
             ++G+ D +         E Y  K     ++                    +E L    
Sbjct: 505 AFKNGVFDFKQKTFRAGRPEDYCCKKLNVNYINYGFSGPLSCDPADFNGPELKETLIFFQ 564

Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
             F   E+  +F R +  A +GGN  +  +   G G +GK+    LI+  FG   V  + 
Sbjct: 565 QVFPDVELRTFFIRQLASAFIGGNLEKICLFWTGSGNNGKTITQTLIEKMFGVFAVKLST 624

Query: 535 ASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
           +    +      G+ANP L R   G R V++ E + ++ INA  +K +TG D   AR  Y
Sbjct: 625 SVLTGKK--LSTGQANPELARTGGGVRWVVMEEPDNDERINAGILKNLTGNDTFWARDLY 682

Query: 594 --GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN------------R 639
             G    E    F   ++ N    ++  D A W R  VIPF+                 +
Sbjct: 683 CAGKDTKEIIPMFKLHVICNNLPEIKYADQAVWNRVRVIPFESVFKPVEECPETYEERLK 742

Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYI---SKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
             +F   ++    L      L     Y       L+ + P   LKA +E R   D Y+ +
Sbjct: 743 AKTFLVDVKFNEKLCKMTEPLAYYLIYYWLNMDRLNYNAPNKVLKATKEYRNENDLYKQF 802

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           +D+              L   Y E+  +   Y       + +   ++  G
Sbjct: 803 VDNNLITESGTILSDRLLYIKYKEWLNETHPYYIVPSRNKAIKKFVEVLG 852


>gi|85716953|ref|ZP_01047917.1| hypothetical protein NB311A_09386 [Nitrobacter sp. Nb-311A]
 gi|85696232|gb|EAQ34126.1| hypothetical protein NB311A_09386 [Nitrobacter sp. Nb-311A]
          Length = 460

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 99/478 (20%), Positives = 182/478 (38%), Gaps = 48/478 (10%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           ++      F         Y   + +W+        +W+    +   +   F    +    
Sbjct: 24  TEDSAALRFVEQHGADLRYCHSSGSWF--------VWNGLRWQRDLTGAVF-EKARLLAR 74

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            L E+                    R+ + + S A    +      + ++++D  D    
Sbjct: 75  ALGED---------------QDARGRKTIGKTSFAGGIERFARNDRVTAVSADYWDRDLW 119

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
            LG   G +DL TG    P +   ITKST    +E      +L  ++   +  + ++ + 
Sbjct: 120 LLGTPGGTVDLRTGVLRNPIRSDGITKSTFCAPLEDG-CPRWLRFLAETTDKDQGLVRFL 178

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
            +  G  L G       + + G GG+GKS  +N++          +A  +        + 
Sbjct: 179 QQWCGYCLTGVTNQHALVFVYGPGGNGKSVFLNVVTAIMAEYATTSAMDTFTA----SQN 234

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
            + +  L  L G+R+V  SET E      A+IK +TGGD +TAR    + +      F  
Sbjct: 235 DRHSTELAMLNGARLVTASETEEGRAWAEARIKALTGGDKITARFMRQDNF-TFTPQFKL 293

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +V N    + N DDA  RR+ ++PF       D    +KL         +W + G   +
Sbjct: 294 IVVGNHKPVLHNVDDAARRRFNIVPFMLKPEQPDHELERKL-MAEAGGILRWMIDGCLDW 352

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-----LWEESHSLAKSYSEY 721
              GL    PE    A E      D +  W++DCC++  +     +W+ S  L +S+SEY
Sbjct: 353 QRAGL--IRPESVKAATEAYFSDQDLFGQWLEDCCEVRIDRGPHFIWDRSADLFESWSEY 410

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
             +      +  S ++    ++++GF      E   +     R  + ++L+ A +  D
Sbjct: 411 SHKAGE---EPGSKKSFGQLMQRRGF------EPYRQPGPGTRGFRFVRLRLAMKEND 459


>gi|293401137|ref|ZP_06645281.1| putative phage/plasmid DNA primase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305263|gb|EFE46508.1| putative phage/plasmid DNA primase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 757

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 110/641 (17%), Positives = 215/641 (33%), Gaps = 53/641 (8%)

Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
           ++      F F        +   +  +      +  +    + +    +   G      S
Sbjct: 141 TQALDAARFFFGTAAADVALYPGRMNLTEFLDEDLFDEDMEDGQYDGSIIPEGSRNATMS 200

Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285
                     +     G    +      +K     D    +  W +   +       ++ 
Sbjct: 201 RF----AGRVIKKYGDGDKAYQAFLEEVAKCVPPLDNSELSTIWHS--AQRFFARVAQQD 254

Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY--- 342
            + +   ++    P       +SD     + + Y      Y+  T  + +   +      
Sbjct: 255 GYVAPEVYND---PSCYKPEDYSDVGQAEVLAKYFSNELRYSPATH-FIRYSDHYWQESE 310

Query: 343 -----IWSLTLDKITASIMNFLVSMKEDVFD-------------LSEEPEDNNKNSKSPR 384
                +      +      N L+   + + +              +E+  +  +      
Sbjct: 311 PGAQAVAHELTRRQMKEANNDLMEALDKMKNCGAQNILDSTSKSKAEQLMNEEQLQVYQE 370

Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK- 443
           F     Y    ++       T+   E+  +  I+   LD+    L   +   DL  G   
Sbjct: 371 FLAAKAYLNFAIKRRDSKNVTSTLKESHPMLEISPRDLDADCFALCTPEATYDLRKGIAG 430

Query: 444 -VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQ 501
             + + E +ITK T     +      +LD ++  F+ ++E++DY     G+A +G    +
Sbjct: 431 AREHSAEDFITKITSVSPSQKG-MPIWLDSLNLIFQHNQELIDYVQMICGLAAIGKVYVE 489

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
             I   G G +GKST  N I    G      +  +  +  R        P +  + G R+
Sbjct: 490 ALIIAYGDGRNGKSTFWNAISRVLGLYSGNISADTLTVGCRR----NIKPEMAEVKGKRL 545

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
           +I +E  E   +N + +KQ+   D + A   Y + +S      T  +  N    V   DD
Sbjct: 546 LIAAEMQEGARLNDSTVKQLCSTDDVFAEKKYKDPFS-FKPCHTLVLYTNHLPRVSASDD 604

Query: 622 AWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
             WRR IVIPF+  I       ++++ L          W ++G K  I     + +P   
Sbjct: 605 GIWRRLIVIPFNAKITGSSDIKNYSEYLYDNAGEAILAWVIEGAKKVIELDYQIPVPACV 664

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
            +A  E R   D +  +++D CD+G    E S +L ++Y  Y      Y R   ST    
Sbjct: 665 QEAINEYRSQNDWFSHFLEDKCDVGIEYKESSSALYQAYRNYCMDTNEYVR---STADFY 721

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
             L+  G+               KR  KGL+++   +  ++
Sbjct: 722 FALENAGYE--------RITQNRKRYFKGLRIRTEDDFEEE 754


>gi|304360923|ref|YP_003857043.1| gp71 [Mycobacterium phage CrimD]
 gi|302858672|gb|ADL71417.1| gp71 [Mycobacterium phage CrimD]
          Length = 872

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 107/633 (16%), Positives = 207/633 (32%), Gaps = 54/633 (8%)

Query: 150 WTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE 209
           W   P   +      ++   +  +              K  +           R   + E
Sbjct: 278 WREEPITERHPWLVKVTVRLMAAVRNKCLTADEYAEARKMIVDKFMAECAATGRDVPSFE 337

Query: 210 ITAFLSCFGEEFY-NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           I    S            +        +H   R   +  E+A               + +
Sbjct: 338 IPNAFSWAEHHVATKTDAELATEFGSHLHLWQRAEPRQIELA----------PMPGLDDR 387

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328
             T      G +++   +   +   + +  P    A   +D  N  +          Y  
Sbjct: 388 QQTAGIGVEGVSSEG--SLAPVVDINARRNPVAP-AVTLTDTGNADLLVEAWGAKLRYCP 444

Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388
           DT  W          W  T                E +    +  E    +  SP+    
Sbjct: 445 DTGKW--------LSWKGTRW-------EHGTDQGEAIVAARQVVEAIKLDDDSPKDVIQ 489

Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
              R  + +      + A+         +    LD+    L    G++DL TG  +  + 
Sbjct: 490 HRMRSLSRKGLENMVALAKCS---PDMRVRLADLDAEPYELNTPSGVVDLRTGHLLPHSP 546

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIR 507
           + + TK TG  +     +  +   ++G F  + E++ Y  R  G+A +G         + 
Sbjct: 547 DGWHTKITGAGYNPAAVAPAWQKFLAGTFGDDVELIGYVQRLAGLAAIGKVTHHVLPFLF 606

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G G +GKS LM+++    G+  +       +         +    + RL G+R+V+ SE 
Sbjct: 607 GGGSNGKSVLMDVLANVLGDYAITAPANFLLAGR-----DRHETEIARLHGARMVVCSEI 661

Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
           N   + + AK+K +TGGD ++ R      Y +   S T F++ N    V     ++WRR 
Sbjct: 662 NAESKFDEAKVKVLTGGDILSGRYM-RQDYFDFTPSHTLFLMGNHQPQVSAGGTSFWRRL 720

Query: 628 IVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
            ++PF   +    R+ + A +L          W + G +   + GL    P   L A +E
Sbjct: 721 RLLPFLHTVPPEQRNPNLAAELIRDEGAAILAWVVAGARQIAADGLR--EPGSVLAATKE 778

Query: 686 ERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
             +  D    +I +CC++        +   + K+Y  +           +S   +   L 
Sbjct: 779 YSEQEDALGRFISECCELTPGASGGAKPALVLKAYQRWAMSNGEDA--MVSQIKLGRELS 836

Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
            +                 +R+  GL L+ +++
Sbjct: 837 AR-------FGVRSVATHGQRVYAGLALQASWD 862


>gi|300933382|ref|ZP_07148638.1| phage-associated protein [Corynebacterium resistens DSM 45100]
          Length = 755

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 109/658 (16%), Positives = 216/658 (32%), Gaps = 65/658 (9%)

Query: 163 PLLSEEDVEYLFKFFQEITVPLVK-DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
           P+    D E      +++       D  +I   +    +N    +  E    +  +  + 
Sbjct: 117 PITPVADAEAYAGLKKQLASRFEFFDPNAIDAGRFIYGHNGPGISVVEGERTIDAWLADA 176

Query: 222 YNGS-HDEWIPVVMAVHHETRG----------------SSKGKEIARRWSKQG-STYDEE 263
            +     +W     A+   +R                 S + +++  R + +      E 
Sbjct: 177 VDEDVFAQWDDATQAIEEGSRNATLSRFAGRLLIRLGTSDEARDLFDRKAARCNPPLPEA 236

Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
                W +        T + +  +          +   +  + +SD       +      
Sbjct: 237 EVESIWRS--ATRFAKTVENQPGY-VPPEDFEASLDS-VRPADYSDVGQAHALAKAYPDT 292

Query: 324 FLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
             Y+            WY+       +     ++  A     L   K+ +          
Sbjct: 293 LRYSEATDWLVYYDGVWYESAPAAQAVAQELTERQLAEAHKLLEDAKDQLAATGAAVLLA 352

Query: 377 NKNSKSPRFWFNTDYRRQN-------------VEENSKAKSTAQSLEAGSIFSITSDLLD 423
           + +    +  FN   R+               ++       T    EA  +   T + LD
Sbjct: 353 SMSKAKAQAMFNAAQRKAFAAFEDAKTYAAYALKRRESRGITNCLKEARPMLLTTPEQLD 412

Query: 424 SSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESE 480
           +    L    G  DL  G   +        +TK T       + +  + + +  +F    
Sbjct: 413 ADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLDPG-TDGAHLWQEALEVFFQGDA 471

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           E++ Y  R VG+A +G    +  +   G G +GKST  N I    G      +     + 
Sbjct: 472 ELISYVQRIVGLAAIGQVFVEALVIAYGDGRNGKSTFWNTIARVLGTYAGNMSADVLTIG 531

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
                     P L    G R++I +E+ E   ++ + +KQ+   D + A   Y   ++  
Sbjct: 532 GMR----NVKPELAEAKGKRLIISAESEEGVRMSTSVVKQLASTDQIYAEKKYKAPFA-F 586

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKW 658
             S T  +  N    V   D   WRR IVIPF+  I       ++A  L T+       W
Sbjct: 587 TPSHTLILYTNHLPRVGAMDAGIWRRLIVIPFEAKIEGTSDIKNYADYLYTQAGGAILAW 646

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
            ++G +   ++   +  P   ++A    R+  + +  ++D  CD+   L E +  L ++Y
Sbjct: 647 IMEGARLIHAENYHLKAPARVVEASAAYREENNWFAQFLDANCDLDPGLSERAGDLYQAY 706

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
             +      + R  +        ++  GF        + K+ KS   + GL+LK  F+
Sbjct: 707 RAWAMSTSGWARPMV---DFNATVEHHGF--------VRKKMKSGIRVFGLQLKNEFD 753


>gi|304407256|ref|ZP_07388909.1| phage/plasmid primase, P4 family [Paenibacillus curdlanolyticus
           YK9]
 gi|304343697|gb|EFM09538.1| phage/plasmid primase, P4 family [Paenibacillus curdlanolyticus
           YK9]
          Length = 808

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 107/815 (13%), Positives = 232/815 (28%), Gaps = 99/815 (12%)

Query: 11  KQAIHNGFKLIPLRLGD---------------KRPQRLGKWEE-QLLSSEKI----DKLP 50
           +  I   + +IPL   D                +   L +W+   +     I     K P
Sbjct: 12  QDYISRSWPIIPLCPPDHQHVSDKHKDQCRSPGKRPLLREWQHISVPDWASINHWFKKYP 71

Query: 51  ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG---TPIVRIGQKPKILIPFR 107
               G V G     + A D+D       +   +  + + G      V       +   +R
Sbjct: 72  TANIGLVLGSPS-GIVAIDVDG------DKGTELLQQMSGGDLPDTVSFSTPNGLRYLYR 124

Query: 108 MNKEGIKKKKTTESTQ-GHLD--ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
                  KK         H +  ++G G   V       + K Y W   P   ++ + P 
Sbjct: 125 APAGITLKKHKRSDPSLPHNECALMGEGNLTVLPPSIHHSGKTYEWIKHPKDVEIAEAPS 184

Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
                +         +                    +     ++    ++   G      
Sbjct: 185 WMVSLMTPSLSAAHSMQNRTSLVLPKASVDPDLLLADFAAKCSQFSADWIQQQGSGIAED 244

Query: 225 SHDEWIPV-------VMAV-------HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270
           +  +WI           A+        H     ++   + +  SK  +       + +  
Sbjct: 245 AWFDWIRTLTNAGAPDAALAFSQASPKHNQASETRIHNLVQEGSKSMTRCSTFGCSEQQI 304

Query: 271 TFDFEEIGDTAKKRST------FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF 324
           +  F +I    + R           L        P       + D        +      
Sbjct: 305 SQCFHKINRDEQGRVKNSPGGLVRGLLNPTEARKPNLQTIGFYIDPKKGTPKGLNSNAFV 364

Query: 325 LYTADTKAWYKK-DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
            Y    +   K       Y ++  + K           ++E + +   +       S+  
Sbjct: 365 RYVVKDRLTIKFCAPERFYSFAKGIWKYMDEN-ELARLLREILHEFVPDFWTTRLESEYL 423

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443
                   R                           + +D+   +L  ++G+L+L T + 
Sbjct: 424 AAIAREAPR--------------------------VEKMDAERNYLNLENGMLNLSTLEL 457

Query: 444 VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502
                E   T      +       EFL+ +S  F   EE++D      G  L    +A +
Sbjct: 458 EPHRPEALSTVRVPIWYDMNAECPEFLEFLSVIFDGDEELIDLVAEIFGYCLTTETRAHK 517

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
                G G +GKS L+ ++K   G   + +    ++ +           S   L+   + 
Sbjct: 518 AFIFYGKGSNGKSVLIEMLKCLIGKANISSLTLGELDK---------PFSRYGLVDKLLN 568

Query: 563 IISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
           + +E    +  ++    K +  G+ +     +   +S            N   + ++   
Sbjct: 569 VATENEVSSSALDTTYFKAIVSGEEIQVEKKHEQGFS-YAPYCKLVFALNNLPYSKDKSF 627

Query: 622 AWWRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
            + RR I++PF+K      A  F Q    K       + LKG+             +   
Sbjct: 628 GFRRRLIIVPFNKTFEEGKADVFLQDKLKKELPGILNFALKGLVRLRKNRYKFSSSKAVD 687

Query: 681 KAKEEERQGTDTYQAWIDDCCD-IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
           +A +      +  Q ++ +       +     + +  ++ ++ ++  + +    S   ++
Sbjct: 688 EALQAYTDTLNPVQRFVREKLSAADSSCRIRYNKIMSAFDDWADKNGHQNNY--SQAKLS 745

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
             +K      GI  E  +      R ++G+ L   
Sbjct: 746 DLIKDCLKAQGITFETFKSGG--LRGLQGISLVSD 778


>gi|269974625|gb|ACZ55146.1| putative DNA primase/helicase [Streptomyces sp. 36R-2-1B]
          Length = 511

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 94/525 (17%), Positives = 184/525 (35%), Gaps = 36/525 (6%)

Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317
             +D      +       E       +++  S         P GLL    SD  N  +F 
Sbjct: 8   PRFDPHTAAQQMLDLQAAEPPALLPAQASPASQNQSAAGRPPAGLLPPHLSDRGNARLFV 67

Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377
              +  F +          +    + W     K T          K  ++   E  ED +
Sbjct: 68  QLYRDQFRHV---------EGLGWFTWDGYRWKRTGGE-------KAVLWAAGEMAEDLS 111

Query: 378 KNSKSPRFWFNTD-YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
           ++     F        ++     +  K+     +A    S+  D LD     L    G++
Sbjct: 112 ESDPRRVFSDRELTAHKRKTLSTTGQKALLTQAKASPDLSVDPDTLDGDPYALCTPSGVV 171

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE----EVMDYFTRCVGM 492
           DL TGQ  KP           +   +   +  +   ++  F ++    E++D+    +G 
Sbjct: 172 DLHTGQLRKPDPSRDFHSRATSVAPQHMETPRWHRFLADTFGNDAEGREMIDFLHLLLGY 231

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
           ++ G   AQ    + G G +GKS L++ +    G+          + +       + +  
Sbjct: 232 SITGDVGAQVLPFLHGEGKNGKSVLLDTMIQILGDYADAAPPGFLMDRGAF---SEHSTE 288

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           L  L G R+V+ SE   ND+ + A+++ +TGGD + AR      Y     +   +++ N 
Sbjct: 289 LTELHGRRLVVCSELKPNDKFDEARVRLLTGGDKIKARRM-RQDYFSFHPTHHLWLLGNH 347

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
              V     A+WRR  ++PF + +    R  + A +L         +W ++G + Y+S  
Sbjct: 348 RPEVSTGGFAFWRRIRLVPFTRTVPAERRIDNLAFELVRDEGPGILQWLIEGARHYLSTR 407

Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG----ENLWEESHSLAKSYSEYREQEL 726
             ++ P+    A        D    ++ + C        +L  E   L   Y+ +     
Sbjct: 408 DPLEGPDRVRLATSAYATTEDHIGRFLTERCVRDSDSPADLRVEQGLLYAEYTSWC--NA 465

Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
               +  + R     ++Q   +G         +   ++   G+ L
Sbjct: 466 GEGVRAATARVFATRVRQDLNLGSPA---DMIKSNGRKYYPGIAL 507


>gi|24575142|gb|AAL06713.1| putative primase/helicase-like protein [Streptomyces globisporus]
          Length = 511

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 82/487 (16%), Positives = 168/487 (34%), Gaps = 35/487 (7%)

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
           GLL    +D  N  +F       + +               Y W  T  +          
Sbjct: 53  GLLPDSLTDRGNAKLFVRLYAQDYRHV---------TGLGWYRWDGTRWQSDEDDT---- 99

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGSIFSITS 419
                ++   E  E          +      + R+     S   +      +     +++
Sbjct: 100 ----VLWVAGEMAESIAATDPRGVYSDAALRKHRRRALSTSGINALLSQARSAPGMVLSA 155

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
             LD+    L    G++DL +G+      +      + +      P+  +   ++  F  
Sbjct: 156 GALDADPYMLCTPAGVVDLRSGKLRAADPDRDFHSRSTSIGPRQMPTPRWDLFLTDTFGD 215

Query: 480 E----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
           +    E++ +    +G +L G   AQ    + G G +GKS L++++    G+        
Sbjct: 216 DARGREMIRFLHLLLGYSLTGDVGAQVMPFLFGSGKNGKSVLLDVLIKLLGDYADAAPPG 275

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             + +            L  L G R+++ SE    D  + +++K +TGGD + AR     
Sbjct: 276 FLMARPFE----GHPTDLAELHGRRVIVCSEVKPGDRFDESRVKLLTGGDRIKARRM-RQ 330

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTL 653
            +     +   +++ N    V     A+WRR  +IPFD+ ++++    + A  L T+   
Sbjct: 331 DFFSFAPTHKLWLLGNHRPEVGTGGYAFWRRMRLIPFDRVVSDQQKIDNLADILVTEEGP 390

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
               W + G   Y++   D+  PE    A     +  D    ++ + C    +   E   
Sbjct: 391 GILNWLITGAHHYLNSPRDLTGPETVRIATTAYAETEDHTGRFLTERCTFQPHHRVEQAR 450

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
           L  +Y+ +   E        S+R     +++     G+   K       ++   G+ L  
Sbjct: 451 LYHAYTAWSRHEG---INPASSRAFAARIREA---VGLASPKEMLLSNQRKYYPGIGLLA 504

Query: 774 AFESVDD 780
             E   +
Sbjct: 505 VAEEEAE 511


>gi|304360825|ref|YP_003856946.1| gp68 [Mycobacterium phage Angelica]
 gi|302858409|gb|ADL71157.1| gp68 [Mycobacterium phage Angelica]
          Length = 872

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 107/633 (16%), Positives = 206/633 (32%), Gaps = 54/633 (8%)

Query: 150 WTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE 209
           W   P   +      ++   +  +              K  +           R   + E
Sbjct: 278 WREEPITERHPWLVKVTVRLMAAVRNKCLTADEYAEARKMIVDKFMAECAATGRDVPSFE 337

Query: 210 ITAFLSCFGEEFY-NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           I    S            +        +H   R   +  E+A               + +
Sbjct: 338 IPNAFSWAEHHVATKTDAELATEFGSHLHLWQRAEPRQIELA----------PMPGVDDR 387

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328
             T      G +++   +   +   + +  P    A   +D  N  +          Y  
Sbjct: 388 QQTAGIGAEGVSSEG--SLAPVVDINARRNPVAP-AVTLTDTGNADLLVEAWGARLRYCP 444

Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388
           DT  W          W  T                E +    +  E    +  SP+    
Sbjct: 445 DTGKW--------LSWKGTRW-------EHGTDQGEAIVAARQVVEAIKLDDDSPKDVIQ 489

Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
              R  + +      + A+         +    LD+    L    G++DL TG  +  + 
Sbjct: 490 HRMRSLSRKGLENMVALAKCS---PDMRVRLADLDAEPYELNTPSGVVDLRTGHLLPHSP 546

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIR 507
           + + TK TG  +     +  +   ++G F  + E++ Y  R  G+A +G         + 
Sbjct: 547 DGWHTKITGAGYNPAAVAPAWQKFLAGTFGDDVELIGYVQRLAGLAAIGKVTHHVLPFLF 606

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G G +GKS LM+++    G+  +       +         +    + RL G+R+V+ SE 
Sbjct: 607 GGGSNGKSVLMDVLANVLGDYAITAPANFLLAGR-----DRHETEIARLHGARMVVCSEI 661

Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
           N   + + AK+K +TGGD ++ R      Y +   S T F++ N    V     ++WRR 
Sbjct: 662 NAESKFDEAKVKVLTGGDILSGRYM-RQDYFDFTPSHTLFLMGNHQPQVSAGGTSFWRRL 720

Query: 628 IVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
            ++PF   +    R+ + A +L          W + G +   + GL    P   L A +E
Sbjct: 721 RLLPFLHTVPPEQRNPNLAAELIRDEGAAILAWVVAGARQIAADGLR--EPGSVLAATKE 778

Query: 686 ERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
             +  D    +I +CC++        +   + K+Y  +           +S   +   L 
Sbjct: 779 YSEQEDALGRFISECCELTPGASGGAKPALVLKAYQRWAMSNGEDA--MVSQIKLGRELS 836

Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
            +                  R+  GL L+ +++
Sbjct: 837 AR-------FGVRSVAINGARVYAGLALQASWD 862


>gi|85715547|ref|ZP_01046528.1| hypothetical protein NB311A_17619 [Nitrobacter sp. Nb-311A]
 gi|85697742|gb|EAQ35618.1| hypothetical protein NB311A_17619 [Nitrobacter sp. Nb-311A]
          Length = 462

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 103/481 (21%), Positives = 183/481 (38%), Gaps = 48/481 (9%)

Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
            + L     ++      F     G   Y   T AW++        W+    K   +   F
Sbjct: 17  IEPLANDIVTEDSAAMEFVDEHCGDLRYCHTTGAWFR--------WNGVFWKRDDTGCAF 68

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
               +E    L+E+ +   +   S   + N   R   V+                  ++T
Sbjct: 69  -QWARELARKLAEDQDKRGRYLTSKVSFANAVERFAQVD---------------PKVAVT 112

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF- 477
           +   D     LG   G +DL+TG   +P ++  ITK+T    ++ +    +   ++    
Sbjct: 113 ASYWDRDPWKLGTPGGTVDLQTGILHEPRQDEGITKATSVAPLD-QDCPLWKRFLNEATR 171

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              +++ +  +  G  L G  +      + G GG+GKS  +N++     +     A  + 
Sbjct: 172 GDVDLIRFLRQWCGYCLTGITREHALAFVHGSGGNGKSVFINIVTSIMNDYATTAAMETF 231

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
                     +    L  L G+RIV  SET E      A+IKQMTGGD +TAR      +
Sbjct: 232 SAGKYA----QHPTDLAMLRGARIVTASETEEGRAWAEARIKQMTGGDPITARFM-RQDF 286

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
                 F   I+ N    + + DDA  RR+ +IP        D    +KL         +
Sbjct: 287 FTFKPQFKLTIIGNHQPVLHSVDDAARRRFNIIPVIHSPETPDRDLERKLMI-EAPAILQ 345

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI----GEN-LWEESH 712
           W ++G   +   GL    PE    A        D    W++DCC++    G N +W+ S 
Sbjct: 346 WMIEGCLDWQRNGL--CRPESVNAATAAYFSDQDLMGQWLEDCCEVKKDRGPNGIWDRSS 403

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
            L +S++EY  +  +   +  S ++   +++++GF      E         R  + ++L+
Sbjct: 404 DLFESWAEYAHKAGD---EPGSKKSFGQSMQRRGF------EPYRIPNVGTRAFRFVRLR 454

Query: 773 P 773
            
Sbjct: 455 T 455


>gi|291556511|emb|CBL33628.1| phage/plasmid primase, P4 family, C-terminal domain [Eubacterium
           siraeum V10Sc8a]
          Length = 752

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 107/576 (18%), Positives = 193/576 (33%), Gaps = 63/576 (10%)

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
              +          K  A   +      ++   +  W +   +   +    +  +     
Sbjct: 205 GRILKRFGNTDEAHKHFAEVAACCQPPLEQSELDSIWRS--AQRFYEKISAQEGYIPPEQ 262

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
           ++  L    L  + +SD     M +   +G   Y+  T            +++    + +
Sbjct: 263 YNQNL---QLKPTDYSDVGQATMLAREYEGKLRYSPSTD---------FLVYNGRFWEES 310

Query: 353 ASIM-------------NFLVSMKEDVFDL----------------SEEPEDNNKNSKSP 383
                                 +K+ V ++                +     + +     
Sbjct: 311 KPKAQAVAQELTTRQLEEAETEIKKAVDEMMKNGAWELLASMGPKKAAMAFSSEQARSFQ 370

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG-- 441
           ++   T YR   ++        A   E   +  I    LD+    L       DL  G  
Sbjct: 371 KYENATTYRNFAIKRRDSKNIFAALKETRPMVEIDQRQLDADEFLLNTPSATYDLRIGIA 430

Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501
              + T   YITK T     +         L++ +    E++ Y     G++ +G    +
Sbjct: 431 SAHEHTPADYITKQTSVDPADKGTEIWQDALITFFCGDNELISYVQEVAGLSAIGKVCVE 490

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
             I   G G +GKST  N +    G      +  +  +  +        P L    G R+
Sbjct: 491 ALIIAYGEGRNGKSTFWNTLARVLGTYSGNLSADTLTVGCKR----NVKPELAEAKGKRL 546

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
           +I +E  E   ++ A +KQ++  D + A   Y + +S    S T  +  N    V   D 
Sbjct: 547 IIAAELEEGMRLSTANVKQLSSTDEIYAEKKYKDPFS-FVPSHTLVLYTNHLPKVGALDA 605

Query: 622 AWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
             WRR IVIPF+  I       ++A  L  K      KW + G K  I +   +  P V 
Sbjct: 606 GTWRRLIVIPFNARIEGSSDIKNYADYLYAKAGGAILKWIMAGAKRVIERDYHIVKPAVV 665

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
            +A  + R+  D    + D+CC I  +   +S     +Y  Y  Q  +Y R   ST    
Sbjct: 666 EEATRKYRENNDWLSQFFDECCVIDPDGKTKSGEFYTAYRSYCMQVGDYIR---STTDFY 722

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             L+  GF        + ++  +  +I GL+LK  F
Sbjct: 723 AALEAAGF--------VRRKTSAGIMISGLQLKSDF 750


>gi|313898154|ref|ZP_07831693.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Clostridium sp. HGF2]
 gi|312957182|gb|EFR38811.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Clostridium sp. HGF2]
          Length = 757

 Score =  313 bits (802), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 107/568 (18%), Positives = 201/568 (35%), Gaps = 49/568 (8%)

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
              +          +      +K     +       W +   +       ++  + +   
Sbjct: 204 GRVIKKYGDCDKAYQTFIEESTKCTPPLEASELATIWHS--AQRFYARLSQQDGYIAPEV 261

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY--------IW 344
           ++    P       +SD     + + Y  G   Y+  T  + +   +           + 
Sbjct: 262 YND---PSCYKPGDYSDVGQAEVLAKYFSGELRYSPATH-FIRYSDHYWQESEPGAQAVA 317

Query: 345 SLTLDKITASIMNFLVSMKEDVFD-------------LSEEPEDNNKNSKSPRFWFNTDY 391
                +      N ++   + + +              +E+  + ++      F     Y
Sbjct: 318 HELTRRQLKEADNDMLDALDKLKNSGAQSLLDSMSKSKAEQLMNEDQMEAYQEFISAKAY 377

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKE 449
           ++  ++       T+   E+  +  I+   LD+    L   +   DL  G     +   E
Sbjct: 378 QQFAIKRRDSKNITSTLKESRPMLEISPRDLDADCFALCTPEATYDLRKGMAGAREHRPE 437

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
            +ITK T          Q +LD +   F+ ++E++DY     G+A +G    +  I   G
Sbjct: 438 DFITKITSVSPNYKGQ-QIWLDCLDLIFQSNQELIDYVQMICGLAAIGKVYVEALIIAYG 496

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            G +GKST  N I    G      +  +  +  R        P +  + G R++I +E  
Sbjct: 497 DGRNGKSTFWNAISRVLGLYSGNISADTLTVGCRR----NIKPEMAEVKGKRLLIAAEMQ 552

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           E   +N + +KQ+   D + A   Y + +S      T  +  N    V   DD  WRR I
Sbjct: 553 EGARLNDSTVKQLCSTDDVFAEKKYKDPFS-FKPCHTLVLYTNHLPRVSASDDGIWRRLI 611

Query: 629 VIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
           VIPF+  I   +   ++++ L          W ++G K  I     + +PE    A +E 
Sbjct: 612 VIPFNAKITGSNDIKNYSEYLYDNAGGSILAWVIEGAKKVIESDYQIPVPECVQNAIDEY 671

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   D +  ++ D C++ ++  E S SL ++Y  Y      Y R   ST      L++ G
Sbjct: 672 RSQNDWFGHFLSDKCEVDQSYKESSSSLYQAYRNYSLDCNEYVR---STADFYFALEKAG 728

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPA 774
           F               KR  KGL+L+  
Sbjct: 729 FE--------RVTMSRKRYFKGLRLRED 748


>gi|315656932|ref|ZP_07909819.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315492887|gb|EFU82491.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 753

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 120/630 (19%), Positives = 223/630 (35%), Gaps = 58/630 (9%)

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
           +F    + P V  ++       W +N + Q       A     GE   N +   +   V+
Sbjct: 151 RFIYGTSNPQVTVREGDQLLDAWLDNADEQDVFAAFDASTLVIGEGSRNATLSRFAGRVL 210

Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF--EEIGDTAKK--RSTFTSL 290
             + +T  +       R+ +      +E      W++      ++           + +L
Sbjct: 211 IRYGDTDQARDLFN--RKANLCEPPLNEGELQTIWNSACRFASKVAADPGYLPPEAYEAL 268

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----- 345
                     GL    FSD       +        Y+  TK W   D             
Sbjct: 269 ---------AGLRPDDFSDVGQADTLAGEYANKIRYSLATK-WLVYDHGVWDENDLSAQG 318

Query: 346 ----------LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK------NSKSPRFWFNT 389
                        D++ AS    + +   D+   S   +           + + R W   
Sbjct: 319 VVQELTSRQLEEADRLIASTWETMTATGADLVMASASSKARGIAKLTPVQATAFRAWDEA 378

Query: 390 DYRRQNVEENSKAKSTAQSL-EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
               + V     +++   +L EAG I  +    LD     L    G  DL  G   +   
Sbjct: 379 KNYHKFVLSRRLSRNITATLKEAGPILQVRIRDLDVDPYQLNTPAGTWDLRDGTSHEHNP 438

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
              +TK T     +   +Q + D +  +F    E++ Y  R VG+A +G    +  +   
Sbjct: 439 ADLLTKQTAVSPSDEG-AQIWADALDVFFQGDPELISYVQRIVGLAAIGQVFVEALVIAY 497

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G G +GKST  N I    G      +  +  +  R        P L    G R++I +ET
Sbjct: 498 GDGRNGKSTFWNTIARVLGTYSGTISADALTVGVRR----NVKPELAEARGKRLLIAAET 553

Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
            E   ++ + +KQ+   D ++A   + + ++    S T  +  N    V   D   WRR 
Sbjct: 554 EEGMRLSTSNVKQLASTDQISAEKKFKDPFA-FTPSHTLVLYTNHLPRVGAMDAGIWRRL 612

Query: 628 IVIPFDKPIA-NRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
           IVIPF+  I  + D  ++A  L          W ++G +   ++G  +  P   ++A + 
Sbjct: 613 IVIPFNATIEGDTDVKNYADHLFENAGGAILTWIMEGARLIHAEGYKLKAPPQVVQASQA 672

Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            ++  D +  +++D CD+ + L E +  L ++Y  + +    + R  +        ++Q 
Sbjct: 673 YKEDNDWFSQFLEDSCDVEDGLSERAGDLYQTYRAWAQNTSGWARPMV---DFNAAVEQA 729

Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
           GF        + K+ K    + GL +   F
Sbjct: 730 GF--------VRKKTKHGMYVYGLAIASEF 751


>gi|182681722|ref|YP_001829882.1| P4 family phage/plasmid primase [Xylella fastidiosa M23]
 gi|182631832|gb|ACB92608.1| phage/plasmid primase, P4 family [Xylella fastidiosa M23]
          Length = 843

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 182/510 (35%), Gaps = 50/510 (9%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
             +           +D  N    + +     + +A+            ++W  T      
Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAE----------RWFVWEGTHWAHGM 402

Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411
                L   + + +    E+      +++  +          +   + S+ +ST ++  A
Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462

Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
              S+  + ++ LD+    L   +G +DL TG       E YIT+     +     +  F
Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVF 522

Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
              ++     E      + D+  R  G    G  +  +   + G+G +GKSTL++LI   
Sbjct: 523 KKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGI 582

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G+   + A    +         +    +  L G R++ ++ET+E   +    +KQ TGG
Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637
           D + AR    + + E   +    ++ N    ++  D   W R ++IPF            
Sbjct: 639 DSLKARHMRSD-FFEFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEA 697

Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
                  D    +KL          W + G   +   GL+   PE+   A ++ +   D 
Sbjct: 698 GAAQYPIDHKITEKL-AAEREGVLAWLVAGAVEWCKNGLNP--PEIVRDASKDYQTEQDR 754

Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
              +I++ C +G    E+  +     L  +Y+++ +    Y    +S       L++   
Sbjct: 755 IAQFIEEECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVY---PLSKTRFLGELERCVP 811

Query: 748 IGGIKREKIEKEWKSKRI---IKGLKLKPA 774
               K      E   +R+   I+G+ L  A
Sbjct: 812 KFRKKHIYETPEGGKRRMFLAIQGIALADA 841


>gi|28199007|ref|NP_779321.1| hypothetical protein PD1115 [Xylella fastidiosa Temecula1]
 gi|28057105|gb|AAO28970.1| phage-related protein [Xylella fastidiosa Temecula1]
          Length = 819

 Score =  313 bits (801), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 182/510 (35%), Gaps = 50/510 (9%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
             +           +D  N    + +     + +A+            ++W  T      
Sbjct: 329 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAE----------RWFVWEGTHWAHGM 378

Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411
                L   + + +    E+      +++  +          +   + S+ +ST ++  A
Sbjct: 379 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 438

Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
              S+  + ++ LD+    L   +G +DL TG       E YIT+     +     +  F
Sbjct: 439 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVF 498

Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
              ++     E      + D+  R  G    G  +  +   + G+G +GKSTL++LI   
Sbjct: 499 KKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGI 558

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G+   + A    +         +    +  L G R++ ++ET+E   +    +KQ TGG
Sbjct: 559 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 614

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637
           D + AR    + + E   +    ++ N    ++  D   W R ++IPF            
Sbjct: 615 DSLKARHMRSD-FFEFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEA 673

Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
                  D    +KL          W + G   +   GL+   PE+   A ++ +   D 
Sbjct: 674 GAAQYPIDHKITEKL-AAEREGVLAWLVAGAVEWCKNGLNP--PEIVRDASKDYQTEQDR 730

Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
              +I++ C +G    E+  +     L  +Y+++ +    Y    +S       L++   
Sbjct: 731 IAQFIEEECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVY---PLSKTRFLGELERCVP 787

Query: 748 IGGIKREKIEKEWKSKRI---IKGLKLKPA 774
               K      E   +R+   I+G+ L  A
Sbjct: 788 KFRKKHIYETPEGGKRRMFLAIQGIALADA 817


>gi|71902152|ref|ZP_00684176.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
 gi|71728086|gb|EAO30289.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
          Length = 848

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 100/497 (20%), Positives = 180/497 (36%), Gaps = 52/497 (10%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA-SIMNFLVSMKEDV 366
           +DA N    +       +             N   +W+    +         +  +   +
Sbjct: 370 TDAANAGRIAKRHGKQLM----------WTGNRWLVWNDRYWESDPVGAHALMADLPALI 419

Query: 367 FDLSEE----PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
              +E+      D                      E   A  T + L       +  + L
Sbjct: 420 RAEAEQWRLKATDTEDGKAKNEKIAAALDAWSKKSEMGSAIETLERLLKKR-LRVPQEQL 478

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-- 480
           D++   L   +G +DL TG       E YIT+     F     + EF+  ++     E  
Sbjct: 479 DTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPLNFDPKATAPEFITTLARITCEEGQ 538

Query: 481 ---EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
               +  +  R  G    G  + Q+F  + G G +GKSTL++LI    G    + A    
Sbjct: 539 AGKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYSGVAAPG-L 597

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +     P+   A   +  L G R+V   E+ E + +    +KQ TGGD + AR  YG  +
Sbjct: 598 LTGKNGPQHPNA---IADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLKARYLYGE-F 653

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQ 645
            E   +    ++ N    ++  D   WRR ++IPF                  RD   A+
Sbjct: 654 FEFKPTHKLQLLTNHKPAIKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGKYPRDMRIAE 713

Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
           KL          W + G   +   GL    P++ L A E+ ++  D    +ID+ C++G 
Sbjct: 714 KL-AAEREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQFIDEECELGV 770

Query: 706 NLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEK 758
              E+  +     L  +Y+++ +         +S       L+++  GF   + +E +  
Sbjct: 771 EKEEKLSTPMGGGLYPAYTQWCKASG---VCALSKVRFLGGLERRVPGFKKKVTKETVGA 827

Query: 759 EWKSK-RIIKGLKLKPA 774
             + +  +I+G+ L  A
Sbjct: 828 GKRREFVVIQGVALVDA 844


>gi|323693308|ref|ZP_08107526.1| phage DNA polymerase [Clostridium symbiosum WAL-14673]
 gi|323502791|gb|EGB18635.1| phage DNA polymerase [Clostridium symbiosum WAL-14673]
          Length = 757

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 108/568 (19%), Positives = 197/568 (34%), Gaps = 49/568 (8%)

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
              +          +      +K     D       W +   +       ++  + +   
Sbjct: 204 GRVIKKYGDSDKAYQAFIDESAKCVPPLDASELATIWHS--AQRFYARLSQQDGYIAPEV 261

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY--------IW 344
           ++    P       FSD     + + Y  G   Y+  T  + +   +           + 
Sbjct: 262 YND---PSCYKPGDFSDVGQAEVLAKYFSGELRYSPATH-FIRYSDHYWQESEPGAQAVA 317

Query: 345 SLTLDKITASIMNFLVSMKEDVFD-----LSEEPEDNNKNS--------KSPRFWFNTDY 391
                +      N ++   + + +     L +    +                      Y
Sbjct: 318 HELTRRQLKEASNDMLEALDKLKNSGAQSLLDSMSKSKAEQVMNENQLQAYQELLAAKAY 377

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKE 449
           ++  V+       T+   E+  +  I+   LD+    +   +   DL  G     +   E
Sbjct: 378 QQFAVKRRDSKNITSTLKESRPMLEISPRDLDADCFAMCTPEATYDLRKGMAGAREHLPE 437

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
            +ITK T          Q +LD +   F  ++E++DY     G+A +G    +  I   G
Sbjct: 438 DFITKITSVSPNYKGQ-QIWLDCLDLIFQGNQELIDYVQMICGLAAIGKVYVEALIIAYG 496

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            G +GKST  N I    G      +  +  +  R        P +  + G R++I +E  
Sbjct: 497 DGRNGKSTFWNAISRVLGLYSGNISADTLTVGCRR----NIKPEMAEVKGKRLLIAAEMQ 552

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           E   +N + +KQ+   D + A   Y + +S      T  +  N    V   DD  WRR I
Sbjct: 553 EGARLNDSTVKQLCSTDDVFAEKKYKDPFS-FKPCHTLVLYTNHLPRVSASDDGIWRRLI 611

Query: 629 VIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
           VIPF+  I +     ++++ L          W ++G K  I     + +P++  KA +E 
Sbjct: 612 VIPFNAKITDSSDIKNYSEYLYDNAGGSILAWVIEGAKKVIESDYQIPVPDLVQKAIDEY 671

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   D +  ++ D C++  +  E S SL ++Y  Y      Y R   ST      L++ G
Sbjct: 672 RSQNDWFGHFLADKCEVDPSYKESSSSLYQAYRNYSLDCNEYVR---STADFYFALEKAG 728

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPA 774
           F               KR  KGL+L+  
Sbjct: 729 FE--------RITVSRKRYFKGLRLRDD 748


>gi|268610656|ref|ZP_06144383.1| Phage DNA polymerase [Ruminococcus flavefaciens FD-1]
          Length = 740

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 135/689 (19%), Positives = 226/689 (32%), Gaps = 73/689 (10%)

Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVK 186
           ++LG   + V Y+ H    K      P        +P       + +     +       
Sbjct: 83  EMLGDVAFAVTYSRHHNLAKGTVTARPRFHVFFPTSPCKDAVFHKAIKARIYKELSFFDG 142

Query: 187 DKKSIIPSKTWTNNN---NRQYTNREITAFLSCFGEEFYNGSHDEWI-PVVMAVHHETRG 242
           +          +N +   +      E    L         G  +  +  +   +      
Sbjct: 143 NALDASRFLFGSNGDVVWHEGSLTIEDWLQLMKSNRSIPEGQRNSTMSRIAGRLVKRFGV 202

Query: 243 SSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301
           + +        + +     D++     W +    + G     +  +        +   + 
Sbjct: 203 TEEAHAKFLEKAAECDPPLDDDELESIWQS--ACKFGTKVTSQEGY----VPPEEYGEEP 256

Query: 302 LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT--------- 352
           ++   FSD                +T  T             ++ T  + +         
Sbjct: 257 MIPDDFSDVGEARTLVNCYGDELAFTIATN---------YLRYNGTYWEESEQAAVMAMI 307

Query: 353 -------ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR------------FWFNTDYRR 393
                  A     + +  E +  +    +D  K  K                    D  R
Sbjct: 308 EHTDVQLAEADKQISAALEALEKVGISKQDAEKGGKKFESDLGLGEMKLYSRMKRYDVFR 367

Query: 394 QNVEENSKAKSTAQSLEA-GSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKEL 450
           + V +    +S   +L+A   +     + LD +   L    G  DL  G           
Sbjct: 368 KFVMKYRNIRSLNNALDAAKPLVLHNPEQLDGNPMLLNTPGGTYDLAKGLDGWKATDPAD 427

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
            ITK T      GE  Q + D +  +F   + ++DY     G+ L+G    +  I   G 
Sbjct: 428 LITKVTTVVPN-GEGQQLWADALQVFFCGDQSLIDYVQMICGLCLIGKVYTEAMIIAYGD 486

Query: 510 GGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
           G +GKST  N+I    G+    I+A+A  +   R        P +  L G R++I +E  
Sbjct: 487 GRNGKSTFWNVIYKVLGSYSGNISADALTVNCKR-----NVKPEMAELKGKRLIIAAELQ 541

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           E   +N + +KQ+   D + A   +   +S    S T  +  N    V   DD  WRR I
Sbjct: 542 EGMRLNTSVVKQLCSTDPIFAEKKFKAPFS-FEPSHTLVLYTNHLPKVAASDDGTWRRLI 600

Query: 629 VIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
           VIPF   I       ++ Q L          W ++G    ++    VD P+  L A    
Sbjct: 601 VIPFHAKIEGSADIKNYTQYLIDNAGGSVLSWLIEGAMKVVAADFKVDRPQCVLDAIGAY 660

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R G D   A+I+DCC+   +  E+S  L K Y EY  +   Y R   ST      L+Q G
Sbjct: 661 RDGNDWLGAFINDCCETDASYQEKSGDLYKRYREYCSESGEYVR---STTDFYTALEQAG 717

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
           F          K+  S + I GL LK  F
Sbjct: 718 FK--------RKKMNSGKYIVGLCLKFDF 738


>gi|285019151|ref|YP_003376862.1| bacteriophage related protein [Xanthomonas albilineans GPE PC73]
 gi|283474369|emb|CBA16870.1| putative bacteriophage related protein [Xanthomonas albilineans]
          Length = 754

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 94/493 (19%), Positives = 167/493 (33%), Gaps = 46/493 (9%)

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
           R    ++      ++      +   DA   A    Y +    Y A    W         +
Sbjct: 293 RLQMHAIDDDAAPVVSNDESVAGTEDALALAFTRRYHRDW-RYVA---TW-----GRWLV 343

Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
           W     +   +     ++  + +  +      +  N+K              +       
Sbjct: 344 WDGQRWRTEDT-----LAATDLIRSVCRHAAVHADNAKIA----------TKLASAGTVS 388

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
              +   A    + T+   D+    L    G++DL TG++    +   ITK T       
Sbjct: 389 GVERLARADRRHAATTAEWDADPWLLNTPGGVVDLRTGRRRTHERADRITKITTA--TPS 446

Query: 464 EPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
           +    +   ++   +   E+  Y  R VG AL G  +      + G G +GKS  +N + 
Sbjct: 447 DGCPIWQRFLAEITDQDNELQAYLQRMVGYALTGSTQEHALFFLYGTGANGKSVFVNTLV 506

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
             FG+        + +       A +    +  L GSR V   ET +      +K+K +T
Sbjct: 507 TIFGDYAANAPMDTFMETR----ADRHPTDMAGLRGSRFVAAIETEQGRRWAESKLKNLT 562

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRD 640
           GGD ++AR      + E    F  F+  N    +RN D+A  RR  +IPF   +    RD
Sbjct: 563 GGDKISARFM-RQDFFEFFPQFKLFVAGNHRPAIRNIDEAMKRRLHLIPFTITVPPERRD 621

Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
               +KL          W ++G   +   G  +  P+  L+A EE  +  D    WI + 
Sbjct: 622 KHLQEKL-LNERDGILAWAVQGCLYWQRLG-RLAPPQQVLQATEEYFEAEDALGRWIGER 679

Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
           C    N    +  L   +  + +    +     S +     L  +G           +  
Sbjct: 680 CVRHVNAKSLTAELFNDWKLWADDAGEFI---GSQKRFADLLLTRGLEK-------WRNS 729

Query: 761 KSKRIIKGLKLKP 773
              R  +G+ LK 
Sbjct: 730 TGLRGFRGVGLKH 742


>gi|71275566|ref|ZP_00651851.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
 gi|71163457|gb|EAO13174.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
          Length = 843

 Score =  311 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 91/510 (17%), Positives = 183/510 (35%), Gaps = 50/510 (9%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
             +           +D  N    + +     + +AD            ++W  T      
Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAD----------RWFVWEGTHWAHGM 402

Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411
                L   + + +    E+      +++  +          +   + S+ +ST ++  A
Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462

Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
              S+  + ++ LD+    L   +G +DL TG       E YIT+     F     + EF
Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEF 522

Query: 470 LDLVSGYFES-----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
           +  ++          + +  +  R  G    G  +  +   + G+G +GKSTL++LI   
Sbjct: 523 ITTLARITCEYGESFKPLCAFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGI 582

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G+   + A    +         +    +  L G R++ ++ET+E   +    +KQ TGG
Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637
           D + AR    + + E   +    ++ N    ++  D   W R ++IPF            
Sbjct: 639 DSLKARHMRSD-FFEFRPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEA 697

Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
                  D    +KL          W + G   +   GL+   PE+   A ++ +   D 
Sbjct: 698 GIAQYPIDHKITEKL-AAEREGVLAWVVAGAVEWCKNGLNP--PEIVRNASKDYQTEQDR 754

Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
              +I++ C +G    E+  +     L  +Y+++ +    Y    +S       L++   
Sbjct: 755 IAQFIEEECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVY---PLSKVRFLGELERCVP 811

Query: 748 IGGIKREKIEKEWKSKR---IIKGLKLKPA 774
               K  K       +R   +I+G+ L  A
Sbjct: 812 DFRKKVTKETVGTGKRRDLVVIQGVGLVDA 841


>gi|61741085|gb|AAX54510.1| ATPase [Lymphocystis disease virus 1]
          Length = 865

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 110/595 (18%), Positives = 191/595 (32%), Gaps = 74/595 (12%)

Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258
                + T      +L            D W+ +   +   T GS KG  I   +SK+  
Sbjct: 249 EAILNEETRPSKLQYLIDLLPLECADDRDIWLEIGFCMWQITEGSPKGYTIWTSFSKKSE 308

Query: 259 TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR----------FS 308
            Y+E+     W                T  SL++   K   +G               ++
Sbjct: 309 KYNEDECFDLW-------YRQMRSNNFTMASLYWLIKKYNSEGFADYVQLYECPPSKYYT 361

Query: 309 DA----YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS---LTLDKITASIMNFLVS 361
           D       K +   +       +     WY+ D                I+ S    L +
Sbjct: 362 DGSHVGIAKIVHHHFGSEFKCVSIKNHIWYRYDGVAWLECHVGVDLRRLISDSKAPVLQT 421

Query: 362 MKEDVFDLSEEPEDNNKNSKS---------------PRFWFNTDYRRQNVEENSKAKSTA 406
           +   +  +S+  E    + K                 +        ++++       S  
Sbjct: 422 LDRQIKTVSDLLEGEETDEKYYQWQEELAQLTLEELEKLMDRLLKIKKSLRMTQFKNSVM 481

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-- 464
           +  E      + +  +DS+   +  ++GI D +         E Y  K     +++    
Sbjct: 482 RECEELFFDPLFAQKIDSNPYLIAFKNGIFDFKQKTFRTGRPEDYCCKKLTINYIDYNFG 541

Query: 465 -------------PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
                          +E L      F   E+  +F R +  A +G N  +  +   G G 
Sbjct: 542 GPLSCEPVNFNGSELKEILIFFQQVFPDVEIRTFFIRQLASAFVGANSEKICLFWTGSGN 601

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNEN 570
           +GK+    LI+  F    V     S +   +    G+ANP L R   G R  ++ E + +
Sbjct: 602 NGKTVTQTLIEKMFSIFAV-KLNTSVLTGKK-LSLGQANPELSRTGGGVRWAVMEEPDND 659

Query: 571 DEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           + INA  +K +TG D   AR  Y  G    E    F   I+ N    ++  D A W R  
Sbjct: 660 ERINAGILKNLTGNDTFWARDLYCAGKDTKEITPMFKLHIICNNLPEIKYADQAVWNRVR 719

Query: 629 VIPFDKPIAN------------RDASFAQKLETKYTLEAKKWFLKGVKAYI---SKGLDV 673
           V+PF+                 R  +F   ++    L      L     Y       L+ 
Sbjct: 720 VVPFESVFKPWEECPETYNERLRLKTFPVDVKFNEKLCKMTEPLAYYLIYYWLNMDRLNY 779

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
           + P+  LKA ++ R   D Y+ +ID+     +N       L   Y E+  +   Y
Sbjct: 780 NPPDKVLKATKDYRNENDLYKQFIDNNLTEEKNTILSDRLLYIKYKEWLNETHPY 834


>gi|298346382|ref|YP_003719069.1| phage-associated protein [Mobiluncus curtisii ATCC 43063]
 gi|298236443|gb|ADI67575.1| phage-associated protein [Mobiluncus curtisii ATCC 43063]
          Length = 747

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 113/570 (19%), Positives = 192/570 (33%), Gaps = 66/570 (11%)

Query: 240 TRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
              S + +E+  + + Q          +  W +    + G        +     +     
Sbjct: 208 FGNSDEARELFEQKATQCVPPLPPSELDAIWHS--ALKFGAKVVATPGYIPPERYAE--- 262

Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
            +GL  + F+D     + +        ++  T            +++ +  + T      
Sbjct: 263 IQGLRPTDFTDVGQANVLADEYAQKLAFSEATD---------WLVYNGSFWEETRPGSRA 313

Query: 359 LVSMKEDVFDLSEEPEDNNKNSK-----------------SPRFWFNTDYR--------- 392
           +         L +  +   K  +                   +  F              
Sbjct: 314 IAQEL-TTRQLEQAAQLLEKAREACDSTGVTQLLSAMSLTKAKNLFTNVQWTAYEQLTGA 372

Query: 393 ----RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
               +  ++       TA   EA  +  +T   LD+    L    G +DL TGQ  +   
Sbjct: 373 QTYEKYVLKRRDSKAITASLKEAAPMLQVTQADLDADPFALNTPGGTIDLTTGQMYEHDY 432

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
             +ITK T T          +L  +  +F   +E++DY  R VG+  +G    +  I   
Sbjct: 433 GDFITKQTTTDPATKG-MDTWLAALEVFFQGDQELIDYVQRIVGLTAIGKVYVEALIIAY 491

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G G +GKST  N I    G      +  +  +  +        P L    G R++I +ET
Sbjct: 492 GDGRNGKSTFWNTIARVLGTYAGNISADALTVGVKR----NVKPELAEAKGKRLLIAAET 547

Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
            E   ++ +  KQM   D + A   Y   ++    S T  +  N    V   D   WRR 
Sbjct: 548 EEGMRLSTSIAKQMASTDLLYAEKKYKAPFA-FAPSHTLVLYTNHLPRVGAMDVGIWRRL 606

Query: 628 IVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
           IVIPF+  I       ++A+ L         +W + G +  I     +  P    +A E 
Sbjct: 607 IVIPFEAKIEGSSDIKNYAEHLYQNAAGAVLQWIVDGARKVIDDDFVLKPPPKVRRALEA 666

Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            R   D    ++DD C+I  +  + S  L   Y  Y      Y R   ST      L+Q 
Sbjct: 667 YRFENDWMTHFLDDNCEIDPSFTQPSGELYSVYRAYALSVGEYAR---STSDFYSALEQL 723

Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
           GF          +  K+ R + GL+LK  F
Sbjct: 724 GF--------RRRRTKNARYVDGLRLKSEF 745


>gi|300909462|ref|ZP_07126923.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
 gi|300893327|gb|EFK86686.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
          Length = 751

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 110/570 (19%), Positives = 196/570 (34%), Gaps = 46/570 (8%)

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
              +          +      +K      ++     W +    + G     +  +  +  
Sbjct: 200 GRIIMRLGNTDEARQAFQEEAAKCDPPLSKQELKNIWHS--ATKFGQRMASQEGY--IPP 255

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWS 345
                    L  + +SD     +F    K    YT        D K W + +   +    
Sbjct: 256 EKYNQPNDDLQPADYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQ 315

Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
              DK  A     + +  + +                    FN + +       +     
Sbjct: 316 RFTDKQLADAQLRVTNSYKKIQQNGVTSALQAMGKTKASRTFNDEQQAAFKNYENAKAYE 375

Query: 406 AQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQK--VKPTKEL 450
           A  L+  S   I               +  D+    L   +G  +L+ G     +   + 
Sbjct: 376 AFILKERSTRGINGILTNSRPKLVKEINDFDADPFLLNTPNGAFNLKKGMHGQQEIQADE 435

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
            ITKST       + +  + + ++ +F   + +++Y    VG+  +G    +  I   G 
Sbjct: 436 LITKSTSCVPG-NQGASLWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGS 494

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST  N I    G      +  +     R        P +  + G R++I +E  E
Sbjct: 495 GRNGKSTFWNTIANVLGTYTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEE 550

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
              +N + +KQ+   D + A   Y   +S    S T  +  N    V   D+  WRR IV
Sbjct: 551 GKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIV 609

Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           IPF   IA R+   ++AQ+L  K      +W ++G +  I +   +  P    KA     
Sbjct: 610 IPFKAKIAKRNDIKNYAQRLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYH 669

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
              D    ++++ C++  +  ++S  L + Y EY +    Y R   ST      LK  GF
Sbjct: 670 ADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTALKNAGF 726

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
               K+        + R IKGL+LK   + 
Sbjct: 727 QRQHKQ--------NGRFIKGLRLKVEADE 748


>gi|13358409|ref|NP_078717.1| D5 family NTPase involved in DNA replication [Lymphocystis disease
           virus 1]
          Length = 874

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 114/655 (17%), Positives = 215/655 (32%), Gaps = 77/655 (11%)

Query: 154 PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213
           P  F   D P +       +    +E  +   K  K  +  K  +   N      E  + 
Sbjct: 210 PSCFGSTDDPRILACFYLTIMPQDKEPYLVTFKTVKLSLVDKIISKKANLLIEPLEKQSK 269

Query: 214 LSCFGEEFYNG---SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270
           L    +   N        W+ +   +   T GS++G ++   +SK+   ++++     W 
Sbjct: 270 LQKLIDLLPNECSNDRIIWLEIGFCLWQITDGSNEGFQLWLSFSKRSEKFNQDECFDIW- 328

Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR----------FSDA----YNKAMF 316
                          T  SL++   K  P G +             ++D       K + 
Sbjct: 329 ------FKQMKPNSFTIASLYWFIKKYNPIGFIDYIRLYKCSPAKYYTDGSHVGIAKIIH 382

Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSL---TLDKITASIMNFLVSMKEDVFDLSEEP 373
             +K      +     W+K D        +       I+ +       + + +  +S   
Sbjct: 383 HHFKMEFKCSSIKNHTWFKYDDVVWAECHVGVNLRRIISDAKGPIFRVLNQQIIVISNLI 442

Query: 374 EDNNKNSKS---------------PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
            +   + +                  F       ++++       S  +  E      + 
Sbjct: 443 NNEELDDEYYIWQSKLIHLSTEELINFRTQLCKIKKSLRMTQFKNSVMRECEELFFDPLF 502

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE--------GEPSQEFL 470
           +  +DS+   +  Q+G+ D +     +   + Y +K     +V+          P     
Sbjct: 503 NQKIDSNPYLMAFQNGVFDFKQKLFRQGRPDDYCSKKLTINYVDYGISQLLSCNPEDFIN 562

Query: 471 D-------LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
                    +   F   E+  +F R +  A +GGN  +  +   G G +GK+    L++ 
Sbjct: 563 QGLKETLIFLEQVFPDIELRVFFIRQLASAFIGGNSEKICLFWTGSGNNGKTITQTLMEQ 622

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMT 582
            FG   V     S I   + P  G+ANP L+R   G R  ++ E + ++ INA  +K +T
Sbjct: 623 MFGPFAV-KLNTSVITGKKLPT-GQANPELVRTGGGVRWAVMEEPDSDERINAGILKSLT 680

Query: 583 GGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI---- 636
           G D   AR  Y  G    E    F   ++ N    ++  D A W R  VIPF+       
Sbjct: 681 GNDTFWARDLYCTGKDTKEIIPMFKLHVICNNLPEIKYADQAVWNRVRVIPFESVFKLAE 740

Query: 637 --AN------RDASFAQKLETKYTLEAKKWFLKGVKAYI---SKGLDVDIPEVCLKAKEE 685
              +          F   L+    L      L     Y       L+ + P   L A +E
Sbjct: 741 ECPDTYKERLNQKIFPVDLKFSEKLSKLIEPLAYYLIYYWLNMDRLNYNPPTKVLNATKE 800

Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
            +   D Y+ +ID+     +N+      L   Y ++  +   Y   +   + +  
Sbjct: 801 YQNDNDIYKQFIDNNLIKQDNIILTERLLYIRYKDWLAETHPYYVVQSRNKAIKR 855


>gi|332523756|ref|ZP_08400008.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332315020|gb|EGJ28005.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 761

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 134/716 (18%), Positives = 239/716 (33%), Gaps = 93/716 (12%)

Query: 127 DILGCGQYFVAYNIHPKTKKE-------YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
           +I     + +  +      K        Y      +    +   +  +E++   +KFF +
Sbjct: 83  EIFADYNFALVTSRSHMQAKAGKAPRPKYHIYFQINEVTDKAIYVALKEELCNQYKFFDD 142

Query: 180 ITVPLVK----DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--------GSHD 227
                 +    + ++ +         +              F  +FY         GS +
Sbjct: 143 HAKDAARFFFGNPQAEVVWHDSWLTIDEDLFQAVSIEDEEDFDADFYTPPNGPIQQGSRN 202

Query: 228 EWIPVVMA-VHHETRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRS 285
             + V  A +      + + ++     +++     D+   +  W +       +   K S
Sbjct: 203 STMSVFAAKILKRLGVTQEARDGFDEQAQKCVPPLDKAELDTIWGS--AVRFYNRTIKTS 260

Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
                +        + L    +SD     + +        YT  T   Y         + 
Sbjct: 261 ---KGYVAPDAFNRETLKPDDYSDVGEAGVLAREYANRLAYTNATDYLY---------YD 308

Query: 346 LTLDKITASIM---------NFLVSMKEDVFDLSEEPEDNNKNSKSPR------------ 384
            T  +    +            L      +    ++ + +  +  + +            
Sbjct: 309 GTHWRENKQLALGAVVHFTDEQLAEANALLESADKQLQSSGIDELTIKAGGKRLENAVET 368

Query: 385 ---------FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
                    +    ++ +  ++        A    A  + S+    LDS    L   +  
Sbjct: 369 PLQLKYLKAYLAAKEFHKFVMKHRDYKNLMAVYNTAKPMLSVELSELDSDDLLLNTPEAT 428

Query: 436 LDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGM 492
            DL  G   + +   E YITK T     +      + + ++ +F   +E++DY    +GM
Sbjct: 429 YDLRKGINGQQEHNPEDYITKITAVSPSDQG-MGLWQETLATFFCNDQELIDYVQEIIGM 487

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
           A +G    +  I   G G +GKST  N I    G+     +  +  M N+       +P 
Sbjct: 488 AAIGKVYQEHMIIAYGGGANGKSTFWNTIARVLGSYSGKLSADALTMSNKR----NVSPE 543

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           L  L G R+VI SE  E   +N A +KQ+T  D + A   Y + +     S T  +  N 
Sbjct: 544 LAELKGKRLVIASEMAEGMRLNTAVVKQITSTDEIQAEKKYKDPFH-FVPSHTLVLYTNH 602

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
              V   DD  WRR +VIPF+  I  R    +FA  L          W ++G +  I   
Sbjct: 603 LPKVGANDDGTWRRLVVIPFNAKITGRSDIKNFADYLYDNAAPAIMSWIIEGAEKAIKAN 662

Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730
               +P     + +  R+  D    ++ DCC +G+ L E+S  L   Y  Y  + + Y R
Sbjct: 663 FKTKVPTAVSASVKAYREANDWLGHFLSDCCQVGDQLTEKSGELYSQYRAYCAKNMEYTR 722

Query: 731 KRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
              ST      L Q GF          K      +I GLKL      VDD  + ID
Sbjct: 723 ---STTDFYSALDQAGFK--------RKRTSKGNLILGLKL------VDDGYDFID 761


>gi|325662086|ref|ZP_08150705.1| hypothetical protein HMPREF0490_01443 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471749|gb|EGC74968.1| hypothetical protein HMPREF0490_01443 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 766

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 103/612 (16%), Positives = 204/612 (33%), Gaps = 49/612 (8%)

Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252
                      +    E  A      E   N +   +      +        +  ++   
Sbjct: 173 SDGDLVTGAPEEDEEFEAPAHSGPILEGSRNKTLSHY--AGRILKKYGLSDDRSFQVFME 230

Query: 253 WSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311
           +  +      ++     W++               +     ++ +    G+    +SD  
Sbjct: 231 YVNKCDPPLPKDEVATIWNS-ATHFYTTKVMTSDGYVPPEEYNDEFGSAGMKPEDYSDIG 289

Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----LTLDKITASIMNFLVSMKEDVF 367
              M +        +T  T  + + D +             ++     +       E   
Sbjct: 290 EAKMLTREYGNELKFTTATD-YLRYDGDCWREDKQLAVGATEEFLDLQLADAQDAVESAV 348

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE----------------- 410
           +       +   +++             + +       AQ+                   
Sbjct: 349 NALIAAGVDEVTARAGGKALEKACDTPKLMKLYFMLLGAQTYLKFVQKRRDYKYIVSTLN 408

Query: 411 -AGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQ 467
            A  + +I    LD +   +      +++E G     +   E  ITK T     E   + 
Sbjct: 409 AAKPMLAINVSELDKNPFLINTPQSTINMEKGMVGAREHNPEDLITKITACSPSEVGKT- 467

Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
            + D ++ +F   +E+++Y  + VG+A +G    +  I   G G +GKST  N I    G
Sbjct: 468 IWEDALNTFFVGDQELIEYVQQTVGVAAVGKVFQEHMIIAYGGGANGKSTFWNTIFRVLG 527

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
           N     +  +  +  +        P +  L G R++I SE  E   +N A +KQ+   D 
Sbjct: 528 NYAGKISAEALTVNCKR----NVKPEMAELKGKRLIIASEMEEGMRLNTATVKQLCSTDE 583

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFA 644
           + A   Y + +S    S T  +  N    V   DD  WRR +VIPF+  I       ++A
Sbjct: 584 IQAEKKYKDPFS-FVPSHTLVLYTNHLPKVGANDDGIWRRLVVIPFNAKITGASDIKNYA 642

Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
             L          W ++G +  I+       P+V   A E  R+  D    +I++CCD+ 
Sbjct: 643 DYLYDNAGGYIMSWIIEGARKAIATDFKTKQPKVVEDAIESYREDNDWLGQFIEECCDVD 702

Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
           +    +S  L ++Y  +      Y R   ST     ++++ GF         +++     
Sbjct: 703 KTFTAKSGELYQAYRAHCTLNGEYIR---STSDFYSSMEKAGFN--------KRKTNKGI 751

Query: 765 IIKGLKLKPAFE 776
           ++ G+ LK   +
Sbjct: 752 LVMGIGLKDGQD 763


>gi|315654960|ref|ZP_07907865.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii ATCC 51333]
 gi|315490921|gb|EFU80541.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii ATCC 51333]
          Length = 747

 Score =  309 bits (792), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 127/746 (17%), Positives = 231/746 (30%), Gaps = 97/746 (13%)

Query: 66  YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125
              D+D+                  +P+  +  +   LI        +    +    +  
Sbjct: 61  VVMDVDN--------------DHSNSPVDWVTPESLALIF---PGVALATATSRNHLKPK 103

Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185
            +     ++   + I P T   +       + K+     + + +     +F        V
Sbjct: 104 GEKTARPRFHAYFPIKPVTDAAF---YTGIKKKLASYTGIFDRNALDAARFIYGNPAAEV 160

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE--TRGS 243
                 +    +         + +  A L     E   G+ +       A         +
Sbjct: 161 TWVDGALSITDF--------LDADAFAALEMATGEIREGARN-ATMSGFAGRVIVRFGNT 211

Query: 244 SKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
            + ++     ++       +      W +    + G        +     +      +GL
Sbjct: 212 EQARQFFEMKAQTCVPPLPDGELEAIWHS--ALKFGAKVAATPGYIPPERYAE---IQGL 266

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
             + F+D     + +        ++  T            +++ +  + T      +   
Sbjct: 267 RPADFTDVGQATVLADEYAQKLAFSEATD---------WLVYNGSFWEETRPGSRAIAQE 317

Query: 363 KEDVFDLSEEPEDNNKNSK------------------------------SPRFWFNTDYR 392
                 L +  +   K  +                                +      Y 
Sbjct: 318 L-TTRQLEQAADLLEKAREACDSTGVTQLLSAMSLTKAKNLFTKVQWNAYEQLTDAQAYE 376

Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
           +  ++       TA   EA  +  +T   LD+    L    G +DL TGQ  +     +I
Sbjct: 377 KYVLKRRDSKAITASLKEAAPMLQVTQADLDAGPFALNAPGGTIDLTTGQIHEHDYGDFI 436

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
           TK T T          +L  +  +F   +E++DY  R VG+  +G    +  I   G G 
Sbjct: 437 TKQTTTDPATKG-MDTWLAALEVFFQGDQELIDYVQRIVGLTAIGKVYVEALIIAYGDGR 495

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           +GKST  N I    G      +  +  +  +        P L    G R++I +ET E  
Sbjct: 496 NGKSTFWNTIARVLGTYAGNISADALTVGVKR----NVKPELAEAKGKRLLIAAETEEGM 551

Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
            ++ +  KQM   D + A   Y   ++    S T  +  N    V   D   WRR IVIP
Sbjct: 552 RLSTSIAKQMASTDLLYAEKKYKAPFA-FAPSHTLVLYTNHLPRVGAMDVGIWRRLIVIP 610

Query: 632 FDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
           F+  I       ++A+ L         +W + G +  I        P    +A E  R  
Sbjct: 611 FEAKIEGSSDIKNYAEHLYQNAAGAVLQWIVDGARKVIDDDFVFKPPPKVRRALEAYRFE 670

Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
            D    ++DD C+I  +  + S  L   Y  Y      Y R   ST      L+Q GF  
Sbjct: 671 NDWMTHFLDDNCEIDPSFTQPSGELYSVYRAYALSVGEYAR---STSDFYSALEQLGF-- 725

Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAF 775
                   +  KS R + GL+LK  F
Sbjct: 726 ------RRRRTKSARYVDGLRLKSEF 745


>gi|326791702|ref|YP_004309523.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
 gi|326542466|gb|ADZ84325.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
          Length = 730

 Score =  309 bits (792), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 98/470 (20%), Positives = 172/470 (36%), Gaps = 20/470 (4%)

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
              K I +     R  D  N    +I  K    +  D   WY  +        +   +I 
Sbjct: 264 EEQKRISEPYKNYRLDDTDNAHTMAIMYKDRLCFAYDMNKWYLYNGIKWEEDRVDGVRIL 323

Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
           A  M  +  M  D   +  +     +  +  +  F  +   +N        S     E  
Sbjct: 324 AGKM--IERMGHDFALILSKM---PEGREKKKQTFLYNMHLKNCRSYRGKSSILN--ETK 376

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
            +  I S   +     +   +G  D+   Q  +     Y+++ T   +VE   +  +   
Sbjct: 377 HLLPIVSTHFNQPRHLINMPNGTYDINDKQLKEHRATDYLSQVTNVAYVENIAAPNWEKF 436

Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           +   F    E+M Y  + +G +L G    Q      G G +GK    +++ Y   +    
Sbjct: 437 IKQIFLGDRELMRYVQKAIGYSLTGFTHEQCMFIGYGDGANGKGVFKDILSYILNDYVKC 496

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
             +A  I Q R  +  +A+P +I LM +R+V+  E+N+    N   IKQ+TG D +TAR 
Sbjct: 497 -PQAETISQIR--QGSEASPDIINLMDARLVVCVESNKGVRFNEGLIKQLTGEDKVTARR 553

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLET 649
            Y    S     F  ++  N    V   D   WRR  VIPF   +    +D    +KL  
Sbjct: 554 LYCEPTS-FLPQFKLWLFTNHMPEVVGTDKGIWRRLKVIPFKLDLPEEKKDKHLKEKL-M 611

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
           K       W ++G+  Y+ +GL    P   +    E ++ +DT   ++ +C    E    
Sbjct: 612 KEVGGILWWCIQGIHLYLEEGLK--EPPAVINLVHEFKEESDTLGLFLKECTIHKEGSKV 669

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
           ++  L   Y E+                  L++K++       R    ++
Sbjct: 670 QAKDLYTKYVEWCRANNEVPDN---KTRFGLDMKKRIPKESDGRNVYYRD 716


>gi|225573260|ref|ZP_03782015.1| hypothetical protein RUMHYD_01451 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039392|gb|EEG49638.1| hypothetical protein RUMHYD_01451 [Blautia hydrogenotrophica DSM
           10507]
          Length = 740

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 128/673 (19%), Positives = 226/673 (33%), Gaps = 52/673 (7%)

Query: 136 VAYNIHPKTK----KEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
           VA+ I P       K+     P         P+   E    L +  Q+            
Sbjct: 87  VAFAIVPSRNNGKPKDGKTARPRFHVYFPHDPITDSETCAALKRAIQQKFPFFDSHALDA 146

Query: 192 IPSKTWTNNNNRQYTNREIT--AFLSCFGEEFYNGSHDEWIP--VVMAVHHETRGSSKGK 247
                        +   EIT    +    +    G  +  +       V          +
Sbjct: 147 ARFIFGNPTEEILWHEGEITIDCIVKPQEKSIPQGQRNSTLSHFAGRVVKRYGATEKAHQ 206

Query: 248 EIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF 307
                  K      +E     W +          + +  + S   ++ +   + L  + +
Sbjct: 207 IFMEEADKCNPPLPDEELASIWQS--ACRFAGKVQSQEGYVSPEDYNDEFCRESLKPADY 264

Query: 308 SDAYNKAMFSIYKKGHFLYTADTK-------AWYKKDKNNVYIWSLTLDKITASIMNFLV 360
           SD     + +        YTA T         W +  +  V      LD   A   + + 
Sbjct: 265 SDIGQAKVLAKEYGMELRYTAATDYIRFCGACWVESKQQAVGAAEEFLDLQLADAKDDVR 324

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPR-------------FWFNTDYRRQNVEENSKAKSTAQ 407
             ++ + D+    +D     K+               +     Y+   ++        + 
Sbjct: 325 WTRQALLDVGVAEDDIMAGGKALEKKISGGQTNVYLAYLSALAYQAFVMKRRDMKYVVSA 384

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEP 465
              A  +  I+   LD     L   DG   L  G   +   + E YITK T     +   
Sbjct: 385 LQAAKPMLEISVSDLDRDGFLLNTPDGTYYLPDGLEGRRDHSPEDYITKITAAGPGDQGK 444

Query: 466 SQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
              +LD +   F + + ++DY  + VGMA +G    +  I   G G +GKST  N +   
Sbjct: 445 -DLWLDALDTIFCQDQALIDYVQQIVGMAAVGRVYLESLIIAYGEGRNGKSTFWNAVARV 503

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G      +  +  +  +        P L  + G R++I +E  E   +N + +KQM   
Sbjct: 504 LGTYSGNMSADTLTVGCKR----NVKPELAEVKGKRLIIAAELEEGMRLNTSVVKQMCST 559

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDAS 642
           D + A   Y + +S    S T  +  N    V   D   WRR IVIPF+  I       +
Sbjct: 560 DEIFAEKKYKDPFS-FTPSHTLVLYTNHLPRVGANDPGTWRRLIVIPFNAKIEGSGDIKN 618

Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
           +A  L ++       W ++G K  IS+   +  P     A +  R+  D    ++ +CC+
Sbjct: 619 YADYLVSEAAPSIMTWIIEGAKKAISRNFHIPAPACVEDAIKSYREDNDWLGHFLGECCE 678

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
           + +   E+S  L + Y  Y  +   Y R   ST      L+  GF+         ++ K+
Sbjct: 679 VDKVYREKSGELYQEYRSYCMRTGEYAR---STADFYNALELAGFM--------RQKTKT 727

Query: 763 KRIIKGLKLKPAF 775
              I+GL++   F
Sbjct: 728 GNFIRGLRIIEDF 740


>gi|227530259|ref|ZP_03960308.1| phage DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227349813|gb|EEJ40104.1| phage DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 749

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 111/570 (19%), Positives = 199/570 (34%), Gaps = 46/570 (8%)

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
              +      +   +      +K      ++     W++    + G     +  +  +  
Sbjct: 200 GRIIMRLGNTAEARQAFQEEAAKCDPPLSKQELKTIWNS--AIKFGQRMANQKDY--IPP 255

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWS 345
                    L  + +SD     +F    K    YT        D K W + +   +    
Sbjct: 256 EKYNQPNDDLQPADYSDTGESYVFVNNCKERVCYTNQSGFMWFDDKVWQESEPLALGEVQ 315

Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
              DK  A     +    + + +                  FN + +       +     
Sbjct: 316 RFTDKQLADAQLRVTQSYQAIQNNGVAKALQTMGKTKASRTFNDEQQAAFKNYENAKAYE 375

Query: 406 AQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQK--VKPTKEL 450
           A  L+  S   I               +  D+    L   +G  +L+ G     +   + 
Sbjct: 376 AFILKERSTRGINGILTNSRPKLVKEINDFDADPFLLNTPNGPFNLKKGMHGQQEIQADE 435

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
            ITKST       + +  + + ++ +F   + +++Y    VG+  +G    +  I   G 
Sbjct: 436 LITKSTSCVPG-NQGASLWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGS 494

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST  N I    G      +  +     R        P +  + G R++I +E  E
Sbjct: 495 GRNGKSTFWNTIANVLGTYTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEE 550

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
              +N + +KQ+   D + A   Y   +S    S T  +  N    V   D+  WRR IV
Sbjct: 551 GKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVVYTNYLPHVGGNDEGIWRRLIV 609

Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           IPF+  IA R+   ++AQ L  K      +W ++G +  I +   +  P    KA     
Sbjct: 610 IPFNAKIAKRNDIKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYQLTTPAAVTKAVRAYH 669

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
              D    ++++ C++  +  ++S  L + Y EY +    Y R   ST    + LK  GF
Sbjct: 670 ADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYTR---STTDFYMALKNAGF 726

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
               K+        S R IKGL+LK   + 
Sbjct: 727 QRQHKQ--------SGRFIKGLRLKVDADE 748


>gi|6960323|gb|AAF12794.2|AF195093_1 putative DNA-primase/helicase [Streptomyces coelicolor A3(2)]
          Length = 426

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 162/434 (37%), Gaps = 26/434 (5%)

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKST 405
           T  +I              ++   +  E    +     F     ++ R      S   + 
Sbjct: 4   TRWQIDEDDT--------VLWAAGDLAETIATHDPRGLFTTTALHKHRTRAMSTSGMNAM 55

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
                +     + +D LD+    L    G++DL TG    P         + T   +  P
Sbjct: 56  LTQARSAPGMVLKADRLDADPYALCTPRGVVDLRTGLLRAPDPNKDFHSRSTTVGPQQMP 115

Query: 466 SQEFLDLVSGYFE-SEE---VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
              +L  ++  F    E   ++DY    +G ++ G   AQ    + G G +GKS L++++
Sbjct: 116 VPRWLRFLTDTFGADAEGQQMIDYLHLLLGYSITGDVGAQILPFLWGTGKNGKSVLLDVM 175

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
               G+          + +            L  L G R+ + SE    D+ + A++K +
Sbjct: 176 MKLLGDYADAAPPGFLMAKPFE----GHPTDLAELHGRRVYVCSEIKPGDKFDEARVKLL 231

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--R 639
           TGGD + AR    + +S    +   +++ N    V     A+WRR  +IPF++ + +  +
Sbjct: 232 TGGDRIKARRMRQDPFS-FEPTHKLWLLGNHKPEVGTGGFAFWRRMRLIPFERVVPDDRK 290

Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
             + A  L  +       W + G + Y+    D+  PE    A     +  D    + ++
Sbjct: 291 IDNLADLLVMEEGPGILAWLIDGARRYLGGDRDLTGPERVRIATTAYAETEDHTGRFYEE 350

Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
           CC +G  L  E  +L  +Y+ +   E     + IS+R      ++     G+   K  K 
Sbjct: 351 CCRLGPELRAEQTALYAAYTAWCHNEGA---QIISSRAFASRTREL---VGLASPKEMKV 404

Query: 760 WKSKRIIKGLKLKP 773
              ++   G+ L  
Sbjct: 405 SNQRKYYPGIGLLT 418


>gi|326790511|ref|YP_004308332.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
 gi|326541275|gb|ADZ83134.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
          Length = 729

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 172/478 (35%), Gaps = 28/478 (5%)

Query: 277 IGDTAKKRSTFTSLFY----HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332
                +  + +  L         KL+ +     R  D  N    +   +    +  D   
Sbjct: 244 TDYLEEGHTKYELLQLVEQVEKQKLLSEPYKNYRLDDTDNAQTMADMFRSKLCFAYDVNK 303

Query: 333 WYKKDKNNVYIW--SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390
           WY  +                       +  M  D   +    E+  +  K    + N  
Sbjct: 304 WYLYNGVKWEEDRVDGVRL----LANEMIDRMSNDFALILGNMEEGKERKKQAVLYQNHL 359

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
              ++    +   +     E   +  I S   +S    +    G   +   +      + 
Sbjct: 360 KSCRSHRGKTSILN-----ETKHLLPIVSTTFNSRRDVINTPTGTYLIHDKEVRPHCYKD 414

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
           Y++++T    VE   +  +   ++  F   +E++ Y  + +G +L G  + Q      G 
Sbjct: 415 YLSQATQVSVVEDAKAPTWERFINEIFLGDQELIRYVQKAIGYSLTGFTREQCMFIGYGD 474

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GK    +++ Y F +      +A  I Q R  +  +A+P +I LM +R+V+  E+N+
Sbjct: 475 GANGKGVFKDILSYIFDDYVKC-PQAETISQIR--QGSEASPDIINLMDARLVVCVESNK 531

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
               N   IKQ+TG D +TAR  Y    S     F  ++  N    V   D   WRR  V
Sbjct: 532 GVRFNEGLIKQLTGEDKVTARRLYCEPMS-FMPQFKLWLFTNHMPEVVGTDKGIWRRLKV 590

Query: 630 IPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           IPF   +    +D     KL  K       W ++G+  Y+ +GL    PE  ++   E +
Sbjct: 591 IPFKLDLPEHKKDRQLKDKL-MKEVEGILWWCIEGIHLYLEEGLK--EPEAIIELVHEFK 647

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
           + +DT   ++ +C         ++  L   Y E+                  L++K++
Sbjct: 648 EESDTLGLFLRECTINKVGSKVQAKDLYTRYVEWCRANNEVPDN---KTRFGLDMKKR 702


>gi|29366784|ref|NP_813724.1| gp9a [Streptomyces phage phiBT1]
 gi|29243104|emb|CAD80132.1| gp9a [Streptomyces phage phiBT1]
          Length = 808

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 83/471 (17%), Positives = 158/471 (33%), Gaps = 45/471 (9%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           SDA N      +  G   Y               ++W       +A+ +   +       
Sbjct: 366 SDAMNAHALVAWTDGRIKYAP---------GLGYFVWDGVTWVKSATRVRQEIHAMGAAL 416

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            L+                       +     ++  +    L +     + +   D+   
Sbjct: 417 VLAG-----------------CLPESRGFTMTTRIDALMTELRSVPSVHVDAGEFDAKPH 459

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYF 486
            L  ++G++DL TG      K   +T S  + +     +  +   +   F    E+ +Y 
Sbjct: 460 LLSFRNGVVDLRTGNIRAHDKNDMLTVSMPSDYDPTAKAPRWEQFLREIFPDHPELAEYM 519

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
            R  G  + G    Q F  + G G +GKS         F         A+   +      
Sbjct: 520 QRLTGYGITGNTSEQCFAVLWGKGSNGKSVYTETCTDLFAPITKTTPFATFEDKGNG--- 576

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           G     L  L  +R+V+ SE      ++ A +K++TG D +TAR      +      F  
Sbjct: 577 GGIPNDLAALRDARLVMASEGESGKPMSEAVLKRVTGKDKVTARFL-RQEFFTFTPKFLI 635

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVK 664
            +  N     ++ D+  WRR  +IPF +      RD    +KL          W ++G  
Sbjct: 636 LLATNHKPKFKSQDEGLWRRVKLIPFTRYFAPEERDYDLDRKL-RAEAAGIIAWAVRGAV 694

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE-ESHSLAKSYSEYRE 723
            + + GL    PE   KA  E R  +D    +     +  ++           +Y+++ E
Sbjct: 695 DWYANGLR--DPECISKATREYRATSDALAGFFPGVLEAADDTHVLPGADAYTAYTDWCE 752

Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
            E    ++  S +     +++        R  ++K+      + G+K+  A
Sbjct: 753 AEGLQRKEVWSRKAFYGAMEE--------RNVMKKKTNKGIALVGVKVADA 795


>gi|300933480|ref|ZP_07148736.1| phage-associated protein [Corynebacterium resistens DSM 45100]
          Length = 754

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 104/674 (15%), Positives = 214/674 (31%), Gaps = 73/674 (10%)

Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206
            +    P +     D     ++ +   F+FF    +            +    +++   T
Sbjct: 111 RFHVYFPINPVADADAYAGLKKQLAARFEFFDPNAIDAG---------RFIYGHDDPSVT 161

Query: 207 NREITAFLSCFGEEFYNGS-HDEWIPVVMAVHHETRGS----------------SKGKEI 249
             E    +  +  +  +     +W     ++   +R +                 + +++
Sbjct: 162 VVEGERTIDAWLADAVDEDVFAQWDDATQSIEEGSRNATLSRFAGRLLIRLGTTDEARDL 221

Query: 250 ARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
             R + +      E      W +        T + +  +          +   +  + +S
Sbjct: 222 FDRKAARCNPPLPEAEVEAIWRS--ATRFAKTVENQPGY-VPPEDFEASLDS-VRPADYS 277

Query: 309 DAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
           D       +        Y+            WY+       +     ++  A     L  
Sbjct: 278 DVGQAHALAKAYPDSLRYSEATDWLVYYDGVWYESAPAAQAVAQELTERQLAEAHELLED 337

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL------------ 409
            K+ +          + +    +  FN   ++            A +L            
Sbjct: 338 AKDQLAATGAAMLLASMSKAKAQAMFNAAQQKAFAAFEDAKTYAAYALKRRESRGITNCL 397

Query: 410 -EAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPS 466
            EA  +   T + LD+    L    G  DL  G   +        +TK T       + +
Sbjct: 398 KEARPMLLTTPEQLDADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLDPG-TDGA 456

Query: 467 QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
             + + +  +F    E++ Y  R VG+A +G    +  +     G +GKST  N I    
Sbjct: 457 HLWQEALEVFFQGDAELIAYVQRIVGLAAIGQVFVEALVIAYEDGRNGKSTFWNTIARVL 516

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
           G      +     +           P L    G R++I +E+ E   ++ + +KQ+   D
Sbjct: 517 GTYAGNMSADVLTIGGMR----NVKPELAEAKGKRLIISAESEEGVRMSTSVVKQLASTD 572

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643
            + A   Y   ++    S T  +  N    V   D   WRR IVIPF+  I       ++
Sbjct: 573 QIYAEKKYKAPFA-FTPSHTLILYTNHLPRVGAMDAGIWRRLIVIPFEAKIEGASDIKNY 631

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
           A  L T+       W ++G +   ++   +  P   ++A    R+  + +  ++D  CD+
Sbjct: 632 ADYLYTQAGGAILAWIMEGARLIHAEDYHLKAPARVVEASAAYREENNWFAQFLDANCDL 691

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
              L E +  L ++Y  +      + R  +        ++  GF          K     
Sbjct: 692 DPGLSERAGDLYQAYRAWAMSTSGWARPMV---DFNATVEHHGFT--------RKRTMHG 740

Query: 764 RIIKGLKLKPAFES 777
             + GL LK  F++
Sbjct: 741 MFVHGLALKNEFDN 754


>gi|307580158|gb|ADN64127.1| P4 family phage/plasmid primase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 842

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 90/509 (17%), Positives = 182/509 (35%), Gaps = 49/509 (9%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
             +           +D  N    + +     + +A+            ++W  T      
Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAE----------RWFVWEGTHWAHGM 402

Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411
                L   + + +    E+      +++  +          +   + S+ +ST ++  A
Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462

Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
              S+  + ++ LD+    L   +G +DL TG       E YIT+     +     +  F
Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVF 522

Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
              ++     E      + D+  R  G    G  +  +   + G+G +GKSTL++LI   
Sbjct: 523 KKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGI 582

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G+   + A    +         +    +  L G R++ ++ET+E   +    +KQ TGG
Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637
           D + AR    + + E   +    ++ N    ++  D   W R ++IPF            
Sbjct: 639 DSLKARHMRSD-FFEFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEA 697

Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
                  D    +KL          W + G   +   GL+   P +   A ++ +   D 
Sbjct: 698 GVAQYPIDHKITEKL-AAEREGVLAWVIAGAVEWYRDGLNP--PGIVRDASKDYQTEQDR 754

Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
              +I + C +G    E+  +     L  +Y+++ +    Y    +S       L++   
Sbjct: 755 IAQFIAEECILGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYA---LSKTRFLGELERCVP 811

Query: 748 IGGIKREKIEKEWKSK--RIIKGLKLKPA 774
               KRE    + K +   +I+G+ L  A
Sbjct: 812 KFRNKRETRTLDGKRRELVVIQGIGLVDA 840


>gi|319757798|gb|ADV69740.1| Phage DNA polymerase [Streptococcus suis JS14]
          Length = 761

 Score =  307 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 119/579 (20%), Positives = 202/579 (34%), Gaps = 73/579 (12%)

Query: 244 SKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
            + ++     +++     D+   +  W +       +   K S     +        + L
Sbjct: 220 QEARDGFDEQAQKCVPPLDKAELDTIWGS--AVRFYNRTIKTS---KSYVTPDAFNRETL 274

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM------ 356
               +SD     + +        YT  T   Y         +  T  +    +       
Sbjct: 275 KPDDYSDVGEAGVLAREYANKLAYTNATDYLY---------YDGTHWRENKQLALGAVVH 325

Query: 357 ---NFLVSMKEDVFDLSEEPEDNNKNSKSPR---------------------FWFNTDYR 392
                L      +    ++ + +  +  + +                     +    ++ 
Sbjct: 326 FTDEQLAEANALLESADKQLQSSGIDELTIKAGGKRLENAVETPLQLKYLKAYLAAKEFH 385

Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKEL 450
           +  ++        A    A  + S+    LDS    L   +   DL  G   + +   E 
Sbjct: 386 KFVMKHRDYKNLMAVYNTAKPMLSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNPED 445

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
           YITK T     +      + + ++ +F   +E++DY    +GMA +G    +  I   G 
Sbjct: 446 YITKITAVSPSDQG-MGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGG 504

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST  N I    G+     +  +  M N+       +P L  L G R+VI SE  E
Sbjct: 505 GANGKSTFWNTIARVLGSYSGKLSADALTMSNKR----NVSPELAELKGKRLVIASEMAE 560

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
              +N A +KQ+T  D + A   Y + +     S T  +  N    V   DD  WRR +V
Sbjct: 561 GMRLNTAVVKQITSTDEIQAEKKYKDPFH-FVPSHTLVLYTNHLPKVGANDDGTWRRLVV 619

Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           IPF+  I  R    +FA  L          W ++G +  I       +P     + +  R
Sbjct: 620 IPFNAKITGRSDIKNFADHLYDNAAPAILSWIIEGAEKAIKANFKTKVPTAVSSSVKAYR 679

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +  D    ++ DCC +G+ L E+S  L   Y  Y  + + Y R   ST      L Q GF
Sbjct: 680 EANDWLGHFLSDCCQVGDQLTEKSGELYSQYRAYCAKNMEYTR---STTDFYSALDQAGF 736

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
                     K      +I GLKL      VDD  + +D
Sbjct: 737 K--------RKRTSKGNLILGLKL------VDDGYDFLD 761


>gi|300909417|ref|ZP_07126878.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
 gi|300893282|gb|EFK86641.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
          Length = 751

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 118/667 (17%), Positives = 211/667 (31%), Gaps = 51/667 (7%)

Query: 141 HPKTKKE-YTWTTPP-HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198
           H KT +  +    P       +    L  E  EY   F                    W 
Sbjct: 103 HHKTPRPKFHVYFPITEITDAKTYAELKHEIQEYFPYFDDNALDAARFVFGVPSTKAIWH 162

Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP---VVMAVHHETRGSSKGKEIARRWSK 255
             +           + +       +               +      +   +      +K
Sbjct: 163 EGSQAVDKFMMAQRYFAQQNIGSIHEGKRNATLSHFAGRIIMRLGNTAEARQAFQEEAAK 222

Query: 256 QGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
                 ++     W +    + G     +  +  +           L  + +SD     +
Sbjct: 223 CDPPLSKQELKNIWHS--ATKFGQRMANQKDY--IPPEKYNQPNDDLQPADYSDTGESYV 278

Query: 316 FSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
           F    K    YT        D K W + +   +       DK        + +  + +  
Sbjct: 279 FVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDKQLTDAQLRVTNSYKKIQQ 338

Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS--------- 419
                             FN + +       +     A  L+  S   I           
Sbjct: 339 NGVTSALQAMGKTKASRTFNDEQQAAFKNYENAKAYEAFILKERSTRGINGILTNSRPKL 398

Query: 420 ----DLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
               +  D+    L   +G  +L+ G     +   +  ITKST       + +  + + +
Sbjct: 399 VKEINDFDADPFLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCIPG-NQGASLWQEAL 457

Query: 474 SGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           + +F   + +++Y    VG+  +G    +  I   G G +GKST  N I    G      
Sbjct: 458 TTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHL 517

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
           +  +     R        P +  + G R++I +E  E   +N + +KQ+   D + A   
Sbjct: 518 SADALTTGVRR----NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKK 573

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETK 650
           Y   +S    S T  +  N    V   D+  WRR IVIPF   IA R+   ++AQ L  K
Sbjct: 574 YMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKRNDIKNYAQYLTEK 632

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
                 +W ++G +  I +   +  P    KA        D    ++++ C++     ++
Sbjct: 633 AGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDWLGHFLNEKCELNPEYEQK 692

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
           S  L + Y EY +    Y R   ST      LK  GF    K+        + R I+GL+
Sbjct: 693 SGDLYQKYREYCQGIGEYIR---STTDFYTALKNAGFQRQHKQ--------NGRFIEGLR 741

Query: 771 LKPAFES 777
           LK   + 
Sbjct: 742 LKVDADE 748


>gi|50843066|ref|YP_056293.1| phage-associated protein [Propionibacterium acnes KPA171202]
 gi|50840668|gb|AAT83335.1| phage-associated protein [Propionibacterium acnes KPA171202]
 gi|315106937|gb|EFT78913.1| phage/plasmid primase, P4 family protein [Propionibacterium acnes
           HL030PA1]
          Length = 752

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 125/774 (16%), Positives = 237/774 (30%), Gaps = 82/774 (10%)

Query: 38  EQLLSSEKIDKLPACGFGFVCGVG-------EQPLYAFDID--SKDEKTANTFKDTFEIL 88
               S E++            G                DID    D        D    L
Sbjct: 27  TDQTSLEQVA-WLDHVAATYTGDRRSSASFISSDCVVMDIDNDHTDNPDEWITPDDLAEL 85

Query: 89  HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148
                              M         +    +    +    ++ V + I P T  + 
Sbjct: 86  -------------------MAGVEFMTATSRNHQKPKRTLSARPRFHVYFPISPVTDAD- 125

Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208
                  R           + ++   +F    T P             W +  +      
Sbjct: 126 -TYAGLKRRLAGRFGFFDPQALDA-GRFIYGTTNPETTIHNGTKLLDAWLDEADEIDVFA 183

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
              A     GE   N +   +   V+  + +T  +    +  R+ S       +      
Sbjct: 184 AFDASTQVIGEGSRNATLSRFAGRVLIRYGQTAQARDLFD--RKASLCEPPLSDHELESI 241

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF---- 324
           W +          + +  + S   +        L    F+D    +M +           
Sbjct: 242 WQS--ACRFAAKVEAQPGYLSPEAYAEL---TSLRPEDFTDVGQASMLTAEYSSRLAFTE 296

Query: 325 ---LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP-------- 373
                  +   W +       I     D+  A   + L   ++++               
Sbjct: 297 ATDWLVYEGGVWSESAPAAQGIAQELTDRQLAEAGHLLEKARDELMVTGANAVLAAASSK 356

Query: 374 -----EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL-EAGSIFSITSDLLDSSSR 427
                   +    + R + +       V +  ++++    L EA  +   T   LD+   
Sbjct: 357 AKALGGFTSPQRAAYRAFEDAKAYEAFVLKRRESRAITSCLREAHPMLLTTPARLDADPY 416

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
            L    G  D+  G +        ITK T     +   ++ +   ++ +F+   E++ Y 
Sbjct: 417 LLNTPGGTWDVRDGTRRDHNPLDLITKQTALDPTDTG-AEIWNRALNVFFQSDRELIGYV 475

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPE 545
            R VG+A +G    +  +   G G +GKST  N I    G     ++A+   I  NR   
Sbjct: 476 QRIVGLAAIGTVMVEALVIAYGDGRNGKSTFWNTIARVLGTYAGNMSADVLTIGGNR--- 532

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                P L    G R++I +E+ E   ++ + +KQ+   D + A   Y   ++    S T
Sbjct: 533 --NVKPELAEAKGKRLIIAAESEEGVRLSTSTVKQLASTDQIYAEKKYKAPFA-FTPSHT 589

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGV 663
             +  N    V   D   WRR IVIPF+  I +     ++A  L          W ++G 
Sbjct: 590 LILYTNHLPRVGAMDAGIWRRLIVIPFNAVIESSSDVKNYADHLYETAGGAVLAWIMEGS 649

Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
           +   ++   +  P   + A    R+  + +  ++D  C++  +L E +  L + Y  + +
Sbjct: 650 RLIHAEDYQLTPPAQVVAASSAYREENNWFAQFLDARCEVDPSLSERAGDLYQEYRAWAQ 709

Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
               + R           L+Q GF          ++ K    + GL L   F S
Sbjct: 710 STSGWARPM---ADFNATLEQSGFE--------RRKSKHGMYVYGLALTSEFNS 752


>gi|298103519|ref|YP_003714761.1| gp11 [Streptomyces phage phiSASD1]
 gi|293338460|gb|ADE43478.1| gp11 [Streptomyces phage phiSASD1]
          Length = 834

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 113/670 (16%), Positives = 205/670 (30%), Gaps = 63/670 (9%)

Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV-----------EDTPLLSEEDVEYLFKF 176
           +   G Y V     P T        P                   + + S E V  L   
Sbjct: 206 MRW-GAYGVLLAASP-TDTFIVTEGPGDGLTAVATGYNALIIRGASLVNSPELVAELAAG 263

Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
            +   V L  D  +     T          +             F      +W       
Sbjct: 264 LKGKRVVLAGDNDTAGNGFTQRLAEGLAAHDVTA----QPLEIPFTGDDLTDWRA----- 314

Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296
                        A   +      D+ +     D  D +   D   + +           
Sbjct: 315 -RNVADFPASLTAAVNDALTAPGPDQPSVLPNVDEEDVDPTRDQVDRITDLYY------- 366

Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356
                L     SD     + S + +G   Y               + WS  + + + S +
Sbjct: 367 ---DTLRQYGASDVQAAYLLSAFAEGQIKYAP---------GLGFFTWSGRVWERSDSKV 414

Query: 357 NFLVS-MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
             +V  +   +   ++   D     +            +      K       L +    
Sbjct: 415 RNMVHFIGRSLNAAAKRKTDEKAPDQKEDPGEGLRKAAKGFTTRRKIDDCLAELASIPSV 474

Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475
            ++    DS    L  ++G +DL TG+  +  KE  +T   G  +        ++  +  
Sbjct: 475 HVSPTDFDSQPELLSFKNGTVDLRTGKIREHRKEDLLTYCLGLNYRPEASCPRWVSFLEE 534

Query: 476 YFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
            F +  E+  YF R VG    G    Q F  + G G +GKS   + +   F +      E
Sbjct: 535 VFPNMPEMPSYFQRLVGYGTTGCTAEQCFAVLWGQGANGKSVATDTLTSIFRD----ITE 590

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
            +         +G     +  L GSR V+ SE      ++ A +K++TG D ++AR    
Sbjct: 591 TTPFSTFEEKSSGGIPNDIAALRGSRFVMASEGESGKPMSEAVLKRVTGKDEISARFL-R 649

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYT 652
             +     +F   +  N     R  D+  WRR  +IPF +      RD +  +KL     
Sbjct: 650 QEFFTFKPTFLLMLATNFKPKFRGQDEGLWRRVKLIPFTRFFAPEERDHTLDRKL-LAEA 708

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE-ES 711
                W +KG   +   GL    P+  + A ++ R+ +D    +     +  +   E  +
Sbjct: 709 EGIAAWAVKGAMEWFQYGLQ--DPQHIIDATKDYRRTSDALAGFFPGVLEFSDGANELTA 766

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
               ++Y+ + E E    R+R + RT    + +        R+   K       + G+++
Sbjct: 767 GQAYQAYTHWCEAEGLPARERWTRRTFLDAMAE--------RKVQRKNTAKGVALVGVRI 818

Query: 772 KPAFESVDDN 781
                   D 
Sbjct: 819 AADHADAPDG 828


>gi|15837307|ref|NP_297995.1| hypothetical protein XF0705 [Xylella fastidiosa 9a5c]
 gi|9105589|gb|AAF83515.1|AE003913_11 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 845

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 93/517 (17%), Positives = 186/517 (35%), Gaps = 52/517 (10%)

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
            +      +           +D  N    + +     + +A+            ++W  T
Sbjct: 349 DAPATLAVERHDVPEALYLTTDKANAVRIAKHYGKRIMVSAE----------RWFVWEGT 398

Query: 348 LDKITASIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKST 405
                      L   + + +    E+      +++  +          +   + S+ +ST
Sbjct: 399 HWAHDTDAARLLTLKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRST 458

Query: 406 AQSLEA--GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
            ++  A   S+  + ++ LD+    L   +G +DL TG       E Y+T+     +   
Sbjct: 459 VEAAMALAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPD 518

Query: 464 EPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
             +  F   ++     E      + D+  R  G    G  +  +   + G+G +GKSTL+
Sbjct: 519 AAAPVFRKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLL 578

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
           +LI    G    + A    +         +    +  L+G R+V ++ET+E   +    +
Sbjct: 579 DLISGVLGRYAGVAAPGLLMD----AGHDRHPTEIADLVGRRMVTVNETSEGGILREGFV 634

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
           KQ TGGD + AR    + + + P +    ++ N    ++  D   W R ++IPF+     
Sbjct: 635 KQATGGDMLKARYMRAD-FFDFPPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFEARFGT 693

Query: 638 -----------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
                        D    +KL          W + G   +  +GL    P +   A ++ 
Sbjct: 694 AEEVKAGVAQYPIDHKITEKL-AAEREGVLAWLVAGAVEWYREGLTP--PAIVRDASKDY 750

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLN 741
           +   D    +I D C +G    E+  +     L  +Y+++ +    Y    +S       
Sbjct: 751 QTEQDRIAQFIKDECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYA---LSKTRFLDE 807

Query: 742 LKQKGFIGGIKREKIEK--EWKSKRI--IKGLKLKPA 774
           LK +      KR+  E     K +R+  I+G+ L  A
Sbjct: 808 LK-RCVPKFRKRDAQETVAGGKRRRVLSIQGIALTDA 843


>gi|260579061|ref|ZP_05846960.1| P4 family prophage LambdaSa04, DNA primase [Corynebacterium
           jeikeium ATCC 43734]
 gi|258602812|gb|EEW16090.1| P4 family prophage LambdaSa04, DNA primase [Corynebacterium
           jeikeium ATCC 43734]
          Length = 754

 Score =  307 bits (785), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 104/674 (15%), Positives = 214/674 (31%), Gaps = 73/674 (10%)

Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206
            +    P +     D     ++ +   F+FF    +            +    +++   T
Sbjct: 111 RFHVYFPINPVADADAYAGLKKQLAARFEFFDPNAIDAG---------RFIYGHDDPSVT 161

Query: 207 NREITAFLSCFGEEFYNGS-HDEWIPVVMAVHHETRGS----------------SKGKEI 249
             E    +  +  +  +     +W     ++   +R +                 + +++
Sbjct: 162 VVEGERTIDAWLADAVDEDVFAQWDDATQSIEEGSRNATLSRFAGRLLIRLGTTDEARDL 221

Query: 250 ARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
             R + +      E      W +        T + +  +          +   +  + +S
Sbjct: 222 FDRKAARCNPPLPEAEVEAIWRS--ATRFAKTVENQPGY-VPPEDFEASLDS-VRPADYS 277

Query: 309 DAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
           D       +         +            WY+       +     ++  A     L  
Sbjct: 278 DVGQAHALAKAYPDSLRSSEATDWLVYYDGVWYESAPAAQAVAQELTERQLAEAHELLED 337

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL------------ 409
            K+ +          + +    +  FN   ++            A +L            
Sbjct: 338 AKDQLAATGAAMLLASMSKAKAQAMFNAAQQKAFAAFEDAKTYAAYALKRRESRGITNCL 397

Query: 410 -EAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPS 466
            EA  +   T + LD+    L    G  DL  G   +        +TK T       + +
Sbjct: 398 KEARPMLLTTPEQLDADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLDPG-TDGA 456

Query: 467 QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
             + + +  +F    E++ Y  R VG+A +G    +  +   G G +GKST  N I    
Sbjct: 457 HLWQEALEVFFQGDAELIAYVQRIVGLAAIGQVFVEALVIAYGDGRNGKSTFWNTIARVL 516

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
           G      +     +           P L    G R++I +E+ E   ++ + +KQ+   D
Sbjct: 517 GTYAGNMSADVLTIGGMR----NVKPELAEAKGKRLIISAESEEGVRMSTSVVKQLASTD 572

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643
            + A   Y   ++    S T  +  N    V   D   WRR IVIPF+  I       ++
Sbjct: 573 QIYAEKKYKAPFA-FTPSHTLTLYTNHLPRVGAMDAGIWRRLIVIPFEAKIEGASDIKNY 631

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
           A  L T+       W ++G +   ++   +  P   ++A    R+  + +  ++D  CD+
Sbjct: 632 ADYLYTQAGGAILAWIMEGARLIHAEDYHLKAPARVVEASAAYREENNWFAQFLDANCDL 691

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
              L E +  L ++Y  +      + R  +        ++  GF          K     
Sbjct: 692 DPGLSERAGDLYQAYRAWAMSTSGWARPMV---DFNATVEHHGFT--------RKRTMHG 740

Query: 764 RIIKGLKLKPAFES 777
             + GL LK  F++
Sbjct: 741 MFVHGLALKNEFDN 754


>gi|15839095|ref|NP_299783.1| hypothetical protein XF2505 [Xylella fastidiosa 9a5c]
 gi|9107708|gb|AAF85303.1|AE004058_4 phage-related protein [Xylella fastidiosa 9a5c]
          Length = 819

 Score =  306 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 88/513 (17%), Positives = 179/513 (34%), Gaps = 50/513 (9%)

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
            +      +           +D  N    + +     + + D            ++W  T
Sbjct: 323 DAPATLAVERHDVPEALYLTTDMANAVRIAKHYGKRLMVSGD----------RWFVWEGT 372

Query: 348 LDKITASIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKST 405
                      L   + + +    E+      +++  +          +   + S+ +ST
Sbjct: 373 HWAHDTDAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKRSEMRST 432

Query: 406 AQSLEA--GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
            +++ A    + ++    LD+    L   +G +DL TG       E Y+T+     +   
Sbjct: 433 VEAMMALAKCMIAVKPKQLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPD 492

Query: 464 EPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
             +  F   +      E      + D+  R  G    G  +  +   + G+G +GKSTL+
Sbjct: 493 AAAPVFRKTLERITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLL 552

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
           +LI    G    + A    +         +    +  L+G R+V ++ET+E   +    +
Sbjct: 553 DLISGILGRYAGVAAPGLLMD----AGHDRHPTEIADLVGRRMVTVNETSEGGLLREGFV 608

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
           KQ TGGD + AR    + + +   +    ++ N    ++  D   W R ++IPF      
Sbjct: 609 KQATGGDMLKARYMRAD-FFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGT 667

Query: 638 -----------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
                        D    +KL          W + G   +  +GL+   PE+   A ++ 
Sbjct: 668 AEEVEAGIAQYPIDHKITEKL-AAEREGVLAWLVAGAVEWYREGLNP--PEIVRDASKDY 724

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLN 741
           +   D    +I D C +G    E+  +     L  +Y+++ +    Y    +S       
Sbjct: 725 QTEQDRVTQFISDECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYA---LSKVRFLGE 781

Query: 742 LKQKGFIGGIKREKIEKEWKSKR---IIKGLKL 771
           L++       K      E   +R   +I+G+ L
Sbjct: 782 LERCVPKFRKKHVYETPEGGKRRMFLVIQGIAL 814


>gi|227875063|ref|ZP_03993208.1| phage-associated protein [Mobiluncus mulieris ATCC 35243]
 gi|304390306|ref|ZP_07372259.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|306817350|ref|ZP_07451095.1| P4 family prophage LambdaSa04 protein [Mobiluncus mulieris ATCC
           35239]
 gi|227844341|gb|EEJ54505.1| phage-associated protein [Mobiluncus mulieris ATCC 35243]
 gi|304326062|gb|EFL93307.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304649791|gb|EFM47071.1| P4 family prophage LambdaSa04 protein [Mobiluncus mulieris ATCC
           35239]
          Length = 753

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 130/747 (17%), Positives = 249/747 (33%), Gaps = 82/747 (10%)

Query: 62  EQPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
                  DID    +  T     +    L    +  +    +  +          K K  
Sbjct: 58  SSDCVVMDIDNDHTETHTDWITPEKLGELMSG-VEFMTATSRNHM----------KAKGV 106

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
            S +         ++ V + IH  T  +        + ++       + +     +F   
Sbjct: 107 LSARP--------RFHVYFPIHTITNAD---EYAGLKHRLASRFGFFDRNALDAGRFIYG 155

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239
            +  +V   +       W +  +         A     GE   N +   +   V+  + +
Sbjct: 156 ASNAVVTAHEGDQLLDAWLDAADEIDVFAAFDASTLVIGEGSRNATLSRFAGRVLIRYGQ 215

Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDT---FDFEEIGDTA-KKRSTFTSLFYHHG 295
           T  +    +  R+ +      +E      W++   F  +   D +      + +L     
Sbjct: 216 TDQARDLFD--RKANLCEPPLNEGELQTIWNSACRFASKVASDPSYLPPEAYEAL----- 268

Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----LTLDKI 351
                GL    FSD       +        Y+  TK W   D              + ++
Sbjct: 269 ----AGLRPDDFSDVGQADTLAGEYANKIRYSLATK-WLVYDHGVWDENDLSAQGVVQEL 323

Query: 352 TASIMNFLVSMKEDVFD-----------------LSEEPEDNNKNSKSPRFWFNTDYRRQ 394
           T+  +     +    +                       + N     + + W  +    +
Sbjct: 324 TSRQLEEAQHLIATTWQDMVSTGADVVMASASSKARGLAKLNPAQVAAFKAWDESKSYHK 383

Query: 395 NVEENSKAKSTAQSL-EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
            V     +++   +L EAG I  +    LD     L    G  DL      +      +T
Sbjct: 384 FVLSRRLSRNITATLKEAGPILQVRVRDLDVDPYQLNTPAGTWDLRDSSSHEHNPADLLT 443

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
           K T     +   +Q + D +  +F    E++ Y  R VG+A +G    +  +   G G +
Sbjct: 444 KQTAVGPSDEG-AQIWADALDVFFQGDVELIGYVQRIVGLAAIGQVFVEALVIAYGDGRN 502

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
           GKST  N I    G      +  +  +  R        P L    G R++I +ET E   
Sbjct: 503 GKSTFWNTIARVLGTYSGTISADALTVGVRR----NVKPELAEARGKRLLIAAETEEGMR 558

Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
           ++ + +KQ+   D ++A   + + ++    S T  +  N    V   D   WRR IVIPF
Sbjct: 559 LSTSNVKQLASTDQISAEKKFKDPFA-FTPSHTLVLYTNHLPRVGAMDAGIWRRLIVIPF 617

Query: 633 DKPIA-NRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
           +  I  + D  ++A  L          W ++G +   S+G  +  P   ++A +  ++  
Sbjct: 618 NATIEGDTDVKNYADHLYEHAGGAILSWIMEGARLIHSEGYKLTPPPQVVQASQAYKEDN 677

Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
           D +  +++D CD+ + L E +  L ++Y  + +    + R  +         +Q GF   
Sbjct: 678 DWFSQFLEDSCDVEDGLSERAGDLYQTYRAWAQNTSGWARPMV---DFNAACEQAGFE-- 732

Query: 751 IKREKIEKEWKSKRIIKGLKLKPAFES 777
                  K+ KS   + GL L   F S
Sbjct: 733 ------RKKTKSGIRVYGLALTSEFNS 753


>gi|197303501|ref|ZP_03168540.1| hypothetical protein RUMLAC_02223 [Ruminococcus lactaris ATCC
           29176]
 gi|197297499|gb|EDY32060.1| hypothetical protein RUMLAC_02223 [Ruminococcus lactaris ATCC
           29176]
          Length = 738

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 134/749 (17%), Positives = 240/749 (32%), Gaps = 77/749 (10%)

Query: 63  QPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             +   DID    DE          E L   P V     P       ++KEG   +    
Sbjct: 33  SDVIVMDIDNDHTDEPMEWITPKNLEELF--PNVEYLLAPSRHHL--LDKEGKSARPRYH 88

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
                 +I   G+Y                 +      ++    +   + + +      +
Sbjct: 89  MYFPISEITDAGRYANLKKAIQS------VYSFFDGNALDAARFIFGAECDEVIYHDGWM 142

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHH 238
           TV    D              + +  + +              GS +  +       +  
Sbjct: 143 TVDEEVD------------IFDIEEEDFDSEMSGGKSTGPILEGSRNNTMSRFAGRILKK 190

Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
                   +       K      +      W++   +    +   +  +     ++    
Sbjct: 191 YGDTEKAHEAFLEHARKCDPPLPDSELKSIWNS-AVKFYRKSIVTQDGYVPPEEYNADFE 249

Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
              L    +SD     +          YT+ T  + + D                ++  F
Sbjct: 250 GATLKPEDYSDIGQAKILVREYGEELKYTSATD-FLRFDGECWREDKQLA---IGAVEEF 305

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT------------------------DYRRQ 394
           L    +D  D     E   +++  P+                              Y + 
Sbjct: 306 LDLQLQDAMDEVARVEKALEDAGVPKASIQAGPKELLKEVDGQLLPLVYMLMGAQTYLKF 365

Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYI 452
             +        + +  A  + +I+   LD     +       DL  G   +        I
Sbjct: 366 VQKRRDYKYIVSAANTAKPMIAISVSDLDKDENLINTPYATFDLRKGLAGEQPHDPGDLI 425

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
           TK T     E    Q +LD +  +F + ++++DY    VGMA +G    +  I   G G 
Sbjct: 426 TKITACSPGEEGK-QIWLDALKLFFCKDQKLIDYVQETVGMAAIGKVYQEHMIIAYGGGA 484

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           +GKST  N I    GN     +  +  M  +        P +  L G R++I SE  E  
Sbjct: 485 NGKSTFWNTIFRVLGNYAGKLSAEALTMNCKR----NVKPEMAELKGKRLIISSEMEEGM 540

Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
            +N A +KQ+   D + A   Y + +S    S T  +  N    V   DD  WRR IVIP
Sbjct: 541 RLNTAVVKQLCSTDEIQAEKKYKDPFS-FVPSHTLVLYTNHLPKVGANDDGIWRRLIVIP 599

Query: 632 FDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
           F+  I  +    ++A  L          W ++G K  I K    D+P+V   A +  R+ 
Sbjct: 600 FNAKITGKSDIKNYADYLFEHAGPAIMSWIIEGAKKAIDKEFHTDLPDVVEAAIKAYRED 659

Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
            D    ++++CC++  +  E+S  L ++Y  +  Q   Y R   ST     ++ + G+  
Sbjct: 660 NDWLGQFLEECCEMDPSYKEKSGELYQAYRAHCMQNGEYIR---STTDFYSSMDKAGYNR 716

Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESV 778
             K   ++        + GLKLK   + +
Sbjct: 717 IRKNTGVQ--------VVGLKLKEGQDFL 737


>gi|308370271|ref|ZP_07420875.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu002]
 gi|308378333|ref|ZP_07482245.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu009]
 gi|308324799|gb|EFP13650.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu002]
 gi|308352847|gb|EFP41698.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu009]
          Length = 501

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/432 (22%), Positives = 158/432 (36%), Gaps = 28/432 (6%)

Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
             + W                 + E    LS+   D    +   +            E  
Sbjct: 89  GWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESA 137

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
           S          A   F+ T   LDS    L   +G LDL T +         ITK     
Sbjct: 138 SGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGA 197

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
           +     S  +   ++     E V  +  R  G+ LLG  +      + GVG +GKS    
Sbjct: 198 YQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDK 257

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
            I+YA G+          + +      G+     + L G R V +SE+ ++  +  + IK
Sbjct: 258 AIRYALGDYACTAEPDLFMHRENAHPTGE-----MDLRGVRWVAVSESEKDRRLAESTIK 312

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637
           ++TGGD + AR      + E   S TP ++ N    V   D A WRR  V+PF+  I   
Sbjct: 313 RLTGGDTIRARKM-RQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPAD 371

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
            +D     +L+         W + G   Y   GL    P+  L A    R+ +DT + +I
Sbjct: 372 EQDRELDARLQL-EADSILSWAVAGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFI 428

Query: 698 -DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
            D+C      L   +  L +++  +R QE       IS +    +L   G+    K    
Sbjct: 429 DDECVTSSPVLKATTTHLFEAWQRWRVQEG---VPEISRKAFGQSLDTHGYPVTDKAR-- 483

Query: 757 EKEWKSKRIIKG 768
           +  W++   ++G
Sbjct: 484 DGRWRAGIAVRG 495


>gi|304389860|ref|ZP_07371819.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304327036|gb|EFL94275.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 747

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 114/630 (18%), Positives = 210/630 (33%), Gaps = 63/630 (10%)

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
           +F      P V   +       W +  + Q             GE   N +   +   V+
Sbjct: 151 RFIYGTPNPQVTVHEGDQLLDAWLDAADEQDVFAAFDQSTLVIGEGSRNATLSRFAGRVL 210

Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF--EEIGDTAKK--RSTFTSL 290
             + +T  +    +  R+ S       +      W++      ++           +  L
Sbjct: 211 IRYGQTDQARDLFD--RKASLCEPPLSDSELATIWNSACRFATKVAANPDYLPPEAYAQL 268

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW------ 344
                      L    F+D     + +        Y+  T AW   +             
Sbjct: 269 ---------TSLKPEDFTDVGQAMVLASEYANRICYSPAT-AWMVYEDGVWEENEPKVQH 318

Query: 345 -------------SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
                           L+ I+       V+        ++     N              
Sbjct: 319 VVQELTTRQLEQVDAELEAISQRASELGVTAMLMAMTKTKALGMFNPKQAQAYRELTAAQ 378

Query: 392 RRQNVEENSKAKSTAQSLE--AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
             Q      ++  T Q++   A  +  I  ++LD+ +  L    G  DL  G +      
Sbjct: 379 EWQKFIYKCRSDRTIQAVMRQARPLTLINPEILDADAYLLNTPTGTWDLRDGSRRDHDPA 438

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
             +TK T T   +   +Q + D +   F   +E++ Y  R  G+A +G    +  I   G
Sbjct: 439 DMLTKQTATDPSDIG-AQVWRDSLELTFGGDQELIAYVQRVCGLAAIGKVLIEALIIAYG 497

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            G +GKST  N I    G+     +    I   +      A   +      R++I  E +
Sbjct: 498 DGNNGKSTFWNTIARVLGSYSETISAEVLIAGKK----NNAKHEMAETRARRLLIAGEND 553

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           E   ++ +        D + A   Y + +S    S T  +  N    V   D   WRR +
Sbjct: 554 EGVRLSTS------STDKIAAEKKYKDPFS-FTPSHTLVLYTNHLPKVGATDTGIWRRLV 606

Query: 629 VIPFDKPI-ANRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
           VIPF + I  + D  ++A  L  +       W ++G +   ++   +  P   ++A E+ 
Sbjct: 607 VIPFTQTIQPSVDVKNYADHLFEQAGGAVLAWIMEGARLIHAENYRLVPPACVVEASEKY 666

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   D +  ++D+CC++   L E+S +L  SY  +      Y R   ST      +++ G
Sbjct: 667 RAANDWFAHFLDECCELDPGLEEKSGALYSSYRAWALSRSEYVR---STSDFYAAVEKNG 723

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
           F          +     ++I+GL+L   FE
Sbjct: 724 FTS--------RRNNRGKLIRGLRLLDEFE 745


>gi|53803176|ref|YP_115052.1| hypothetical protein MCA2648 [Methylococcus capsulatus str. Bath]
 gi|53756937|gb|AAU91228.1| prophage LambdaMc01, DNA primase, P4 family [Methylococcus
           capsulatus str. Bath]
          Length = 755

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 93/478 (19%), Positives = 161/478 (33%), Gaps = 46/478 (9%)

Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
           P    +   +D      F+      + Y A   AW         +W     +   +++  
Sbjct: 309 PTQEPSVWATDDALALAFTSRYAEDWRYCA---AW-----GKWLVWDGRRWQADETLLVH 360

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
                  +  +  E      + +          +          +  A++       + T
Sbjct: 361 -----HLIRAICREAALKADSHRLA-------AKLAASSTVGGVERLARTDR---RHAST 405

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
           S+  D+    L    GI+DL+TG+     +   +TK              +   +     
Sbjct: 406 SEEWDADLFALNTPSGIVDLKTGRIKPHDRRERMTKLATA--TPHGDCARWRAFLEDITG 463

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
               +  Y  R VG  L G   A     + G G +GKS  +N +    G+        + 
Sbjct: 464 GDTALQAYLQRMVGYCLTGATSAHALFFLYGTGANGKSVFVNTLATILGDYATSAPMDTF 523

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +         +    L  L G+R V   ET +    N +K+K +TGGD ++AR      +
Sbjct: 524 ME----ARGDRHPTDLAGLRGARFVSSIETEQGRRWNESKVKAITGGDKVSARFM-RQDF 578

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
            E    F   I  N    +RN D+A  RR  +IPF   I    RD    +KL        
Sbjct: 579 FEYLPQFKLVIAGNHKPAIRNVDEAMKRRLHLIPFTVTIPPEKRDGQLTEKL-LAERDGI 637

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
             W ++G  A+   GL+   P   + A EE     D    ++D+     E        + 
Sbjct: 638 LAWAVEGCLAWQRDGLNP--PASVVSATEEYFDEEDAIGDFLDEEAQRFEQARVAVADVF 695

Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
           + + E+  +   Y     ++R +   L  +GF          +     + + GL LKP
Sbjct: 696 QRWQEWATRRGEY---VGTSRWLAQQLANRGFGRA-------RLHGGVKGLAGLSLKP 743


>gi|207725439|ref|YP_002255835.1| bacteriophage-related protein [Ralstonia solanacearum MolK2]
 gi|206590675|emb|CAQ37637.1| bacteriophage-related protein [Ralstonia solanacearum MolK2]
          Length = 769

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 166/471 (35%), Gaps = 45/471 (9%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           ++      F+      + Y +    W         +W+         +  ++  +   + 
Sbjct: 327 TEDGLATAFTRRYGDDWRYCS---LW-----GKWLVWTGVRWNHDQLL--YVTHLSRGI- 375

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
                        ++      T  ++  +  +S   +  +   +    + T+D  D+   
Sbjct: 376 ------------CRAASLKAQTPRQKAKLAGSSTIAAVEKIARSDPKHAATADEWDADVW 423

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFV--EGEPSQEFLDLVSGYFE-SEEVMD 484
            L    G++DL TG      +E  +TK T        GE    +L  +      + ++  
Sbjct: 424 ALNTPGGVVDLRTGNLRAHRREDRMTKVTTATPRGRNGEGCPSWLAFIGDITGGNTDLAA 483

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
           Y  R  G AL G  +      + G G +GKS  +N +    G+  V  A  + +      
Sbjct: 484 YLQRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYAVNAAMDTFMETR--- 540

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
            A +    +  L G+R V   ET +      +K+K +TGGD ++AR      + E    F
Sbjct: 541 -ADRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM-RQDFFEFFPQF 598

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
             F+  N    +RN D+A  RR  +IPF   +    RD    QKL          W ++G
Sbjct: 599 KLFVAGNHKPAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKL-LAERDGILAWAVQG 657

Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
              +   G  +  P+  L A EE  +  D    W+D+ C    N    +  L   + ++ 
Sbjct: 658 CLDWQRLG-RLQPPQQVLDATEEYFEAEDALGRWLDERCVREANAKTLTAELFNDWKQWA 716

Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
           E    +     S +     L  +G           +     R  +G+ LK 
Sbjct: 717 EAAGEFA---GSQKRFADLLLIRGVEK-------WRNTAGLRGFRGVGLKH 757


>gi|170739471|ref|YP_001768126.1| hypothetical protein M446_1166 [Methylobacterium sp. 4-46]
 gi|168193745|gb|ACA15692.1| phage/plasmid primase, P4 family [Methylobacterium sp. 4-46]
          Length = 467

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/473 (20%), Positives = 169/473 (35%), Gaps = 49/473 (10%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           ++      F+   +G   Y  D+K W          W+ T+ + T  +       +E   
Sbjct: 31  TEDGVALEFAKQFEGFLRYNVDSKTW--------LHWTGTIWE-TDKVKRAFQYARELAR 81

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            +++E                  + R    + + A +     +         +  D    
Sbjct: 82  RVAQEAPG---------------HLRVTHSKVAFAANVETFAKTDPRLVTVYEDWDLDPY 126

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486
            LG   G +DL TG+     +   IT++T     +     +FL  +   F    E + + 
Sbjct: 127 LLGTPGGTIDLRTGELRPALQSDMITRTTAVAPADTAECPQFLQFLDETFGGDTETVRFL 186

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
            +  G  L G    QRF+   G GG+GK  L+        +   + A  +          
Sbjct: 187 QQWCGYCLTGDTTEQRFVFGEGKGGNGKGVLIGTALGILKDYATVVAMEALTAAK----H 242

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
            +    +  L G R+V  SET    E   A+IK +TGGD + AR    + + E    F  
Sbjct: 243 DRHPTEIAALRGKRLVTASETEGGREWAEARIKALTGGDRIKARFMRQDEF-EFLPQFKL 301

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664
           F++ N    +RN D A  RR IV+PF+  +    RD    +KLE        +W + G  
Sbjct: 302 FVMGNNRPSLRNVDQAMRRRLIVVPFNNDVPKEKRDPDLPKKLE-AEWPGILRWMIDGCL 360

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN---LWEESHSLAKSYSEY 721
            + +    +  P+      EE   G D    ++ + CD+      L   S  L  ++  Y
Sbjct: 361 DWQAN--RLISPKAVEDNTEEYFSGQDLLGQFLAEKCDLDPGNDRLTVGSTELYNAWKSY 418

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
                       + +  +  +  +GF         +    + R   G++LKP 
Sbjct: 419 ALVNGEEAE---AQKVFSPKIAGRGFP--------QIRGATGRGFSGIRLKPC 460


>gi|71897551|ref|ZP_00679796.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
 gi|71732454|gb|EAO34507.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
          Length = 843

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 92/511 (18%), Positives = 181/511 (35%), Gaps = 52/511 (10%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
             +           +D  N    + +     + +A+            ++W  T      
Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAE----------RWFVWEGTHWAHGM 402

Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411
                L   + + +    E+      +++  +          +   + S+ +ST ++  A
Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462

Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
              S+  + ++ LD+    L   +G +DL TG       E YIT+     +     +  F
Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCTNGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVF 522

Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
              ++     E      + D+  R  G    G  +  +   + G+G +GKSTL++LI   
Sbjct: 523 KKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGI 582

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G+   + A    +         +    +  L G R++ ++ET+E   +    +KQ TGG
Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637
           D + AR    + + E   +    ++ N    ++  D   W R ++IPF+           
Sbjct: 639 DSLKARHMRSD-FFEFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFEARFGTAEEVEA 697

Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
                  D    +KL          W + G   +   GL+   P +   A ++ +   D 
Sbjct: 698 GVAQYPIDHKITEKL-AAEREGVLAWVIAGAVEWYRDGLNP--PGIVRDASKDYQTEQDR 754

Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
              +I D C +G    E   +     L  +Y+++ +    Y    +S       L ++  
Sbjct: 755 VTQFIKDECVLGMEHEEPLTAPMGGGLYPAYTQWCKDSGVYA---LSKTRFLGEL-ERCV 810

Query: 748 IGGIKREKIEKEWKSKRI----IKGLKLKPA 774
               KR+  E     KR     I+G+ L  A
Sbjct: 811 PKFRKRDVKETVGTGKRRRVLSIQGIGLVDA 841


>gi|300764697|ref|ZP_07074688.1| hypothetical protein LMHG_11071 [Listeria monocytogenes FSL N1-017]
 gi|300514583|gb|EFK41639.1| hypothetical protein LMHG_11071 [Listeria monocytogenes FSL N1-017]
          Length = 747

 Score =  306 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 128/666 (19%), Positives = 227/666 (34%), Gaps = 68/666 (10%)

Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206
            +    P      +D  +  ++ ++  F +F    +   +       S+      ++  T
Sbjct: 111 RFHVYFPIPATTDKDEYVELKKQIQSEFPYFDNNAMDAARLLFGTPNSEVEIYEGSKLIT 170

Query: 207 N---REITAFLSCFGEEFYNGSHDEWIP-VVMAVHHETRGSSKGKEIARRWSKQG-STYD 261
           +    ++ A       E   GS +  +  +   +      +          SK+      
Sbjct: 171 DFLEDDLFADWDNAQSEISEGSRNSSMSHIAGKLIKRYGATEDTYHKYLEQSKKCNPPLP 230

Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
           EE     W++      G   K++  +     ++  L    L  + +SD     + +   +
Sbjct: 231 EEELKAIWNS--AVNFGKKVKQQEGYIPPEQYNSDL---SLEPTDYSDLGQATVLAREYE 285

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITA-----------------SIMNFLVSMKE 364
               Y+  T            +++ +  + +                  S        KE
Sbjct: 286 CKLHYSPSTG---------YLVYNGSYWEESKPKAQGVIHALTERQLEESETEIEKRTKE 336

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDY------------RRQNVEENSKAKSTAQSLEAG 412
            V + +     +    K+   +                 ++  V+       ++   EA 
Sbjct: 337 MVSNGAFGVLASVGPKKAVTMFNTAQRHSFDLYQHAQEYKKFAVKRRDSKYLSSALTEAK 396

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
            +  I   LLD +   L       DL TG+      E YITK T     +    Q +LD 
Sbjct: 397 PMLEIEQRLLDVNEFLLNTPTATFDLRTGKSQDHNSEDYITKQTECAPSD-ANQQIWLDA 455

Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           ++  F   +E++DY    VG+A +G    +  I   G G +GKST  N+I    GN    
Sbjct: 456 LNTIFVGDQELIDYVQMIVGLAAIGKVYVEALIISYGEGRNGKSTFWNVISRVLGNYSGS 515

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
            +      Q R        P L    G R++I +E  E   +N + IKQ+   D + A  
Sbjct: 516 ISADILTSQIRR----NVKPELAEAKGKRLLIAAELEEGMRLNTSNIKQLCSTDEIAAEK 571

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLET 649
            Y + + +   + T  +  N    V   D   WRR IVIPF   I       ++A  L  
Sbjct: 572 KYKDPF-KYVPTHTLVLYTNHLPKVGAIDKGTWRRLIVIPFLATIDGNKDIKNYADYLFE 630

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
                  +W L G K  I+    + +P+V   A  E +   D    ++D+CC+   +  E
Sbjct: 631 NAGGAILQWILDGAKKVIAADFHLTVPQVVANAISEYKTANDWLGHFLDECCETAVDFEE 690

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
           +S  L   Y  +  +   Y R   S+      L+  GF          +       I GL
Sbjct: 691 KSGELYAEYRAFCTRTGEYIR---SSADFYTALEAGGFK--------RRRTNKGNKIVGL 739

Query: 770 KLKPAF 775
           +LK  F
Sbjct: 740 QLKSEF 745


>gi|311977583|ref|YP_003986703.1| putative helicase [Acanthamoeba polyphaga mimivirus]
 gi|160369783|sp|Q5UQ22|YL207_MIMIV RecName: Full=Putative helicase L207/L206
 gi|308204253|gb|ADO18054.1| putative helicase [Acanthamoeba polyphaga mimivirus]
          Length = 960

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 104/603 (17%), Positives = 192/603 (31%), Gaps = 52/603 (8%)

Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS---KTWTNNNNRQYTNREITAFLSCFGE 219
           PL  +  ++ + +     T      K +         +    + +         L     
Sbjct: 315 PLAIDAKLKKIKEKINNNTNNTNTHKNTAELGDHHFNFIKAVSEETLVE--AKNLVKLFS 372

Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIG 278
                 +  W  V   + +      +  E    +SK+    + +E     W   + +   
Sbjct: 373 VQRATDYHTWYQVGRCLSNI---DHRLLEDWITFSKKCPSKFKKEECERLWRNMNMKPSN 429

Query: 279 ---------DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329
                     +      +  +       + K  + +       K +   YK  +   +  
Sbjct: 430 YTMATLHYFASKDDPDKYFEMKKLKIDGLIKEGMEASH-HTIAKLLIEKYKFIYKCASIK 488

Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP--EDNNKNSKSPRFWF 387
              WY+   +                   +         L  E   +D     +      
Sbjct: 489 NGIWYEFRNHRWIEIDSAYTLRNLISEVLVNEYANRQRILFGEATRQDAENKKEKFNDAV 548

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447
           N     + +  N+      +     +        LD ++  +G ++G+ DLE G      
Sbjct: 549 NITKVIKQLNNNTFKNGVIKECADIAYDPNFLRNLDENNYLIGFENGVFDLEAGIFRDGC 608

Query: 448 KELYITKSTGTPFVEGEPSQE----FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF 503
            +  I+  T   ++E +   E        +      + + +Y    +   L G N  + F
Sbjct: 609 PDDCISLCTNYKYIEIDEDDETFKNINGFLKKIQPDKSMREYILTLLSTCLSGTNSEESF 668

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
             + G G +GKS LM L+KY  G+ Y    +   + + R   +  A+P L    G R   
Sbjct: 669 YVLTGSGANGKSKLMELLKYTLGDLYK-PMDIRLLTEKRSSSS-SASPELADKKGIRACP 726

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
             E   +DEIN   +K  TGGD +TAR  Y          F PF++ N+   +++ DD  
Sbjct: 727 FDEPKASDEINTGFMKIFTGGDTITARALYKEP-IYFKPQFKPFLLCNELPTIKSDDDGT 785

Query: 624 WRRYIVIPFDKPIANR-------------------DASFAQKLETKYTLEAKKWFLKGVK 664
           WRR  VIPF                          D S ++KL   +        LK  +
Sbjct: 786 WRRLKVIPFLSKFIKHSEATKKMKKEGLPKNHFWADTSLSEKLP-DWKQGFMCLLLKYFR 844

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYR 722
            Y   GL    P++  +   E R+  D +Q +I D     +N         L ++  E+ 
Sbjct: 845 KYRKHGL--IHPKLVTQHTVEYRKKCDVFQDFIGDYLVRVDNTKKGISVMDLYQNMREWY 902

Query: 723 EQE 725
           +  
Sbjct: 903 KSN 905


>gi|284048433|ref|YP_003398772.1| phage/plasmid primase, P4 family [Acidaminococcus fermentans DSM
           20731]
 gi|283952654|gb|ADB47457.1| phage/plasmid primase, P4 family [Acidaminococcus fermentans DSM
           20731]
          Length = 372

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 156/375 (41%), Gaps = 24/375 (6%)

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQE 468
           A  + ++    LD     L   +   DL  G +       +  ITK T     +    + 
Sbjct: 16  AKPMLALDVSELDYDPELLNTPEATYDLTQGTRGSHPHDPDDLITKITACSPGDKG-MEL 74

Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           + + +  +F    E++ Y  + VGMA +G   A++ I   G G +GKST  N I    G 
Sbjct: 75  WQESLDLFFCHDRELIQYVQQIVGMAAVGRVYAEQMIIAYGGGANGKSTFWNTIARVLGT 134

Query: 528 QY-VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
               I+A+A  +   R        P +  L G R++I SE  E   +N   +KQ+   D 
Sbjct: 135 YSGKISADALTMSCKR-----NVKPEMAELKGKRLIIASELEEGQRLNTGMVKQICSIDP 189

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFA 644
           + A   Y + +     S T  +  N    V   DD  WRR IVIPF+  I  +    +++
Sbjct: 190 IEAEKKYKDPFH-FVPSHTLVLYTNYLPKVTANDDGTWRRLIVIPFNAKITGKSDIKNYS 248

Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
             L         KW ++G +  I KG  ++ P+    A E+ R+  D    +++D C+I 
Sbjct: 249 DYLFEHAGPAILKWVIEGAETAIRKGFKIEEPKAVRNAVEKYREDNDWLGQFLEDHCEID 308

Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
            +  E S  L + Y     Q   Y R   ST     NL++ GF     R+          
Sbjct: 309 PSFTERSGKLYQHYRVICLQSGEYIR---STTDFYGNLEKAGFFRHRTRD--------GS 357

Query: 765 IIKGLKLKPAFESVD 779
            ++GLKLK   + +D
Sbjct: 358 FVRGLKLKEGQDFLD 372


>gi|312115495|ref|YP_004013091.1| phage/plasmid primase, P4 family [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220624|gb|ADP71992.1| phage/plasmid primase, P4 family [Rhodomicrobium vannielii ATCC
           17100]
          Length = 726

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 130/791 (16%), Positives = 245/791 (30%), Gaps = 127/791 (16%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLP----------ACG 53
           +      + +G + +P         R      W  Q  +     +            + G
Sbjct: 27  RRWVAWRLEDG-RKVPKDARTGGNARSNDSSSWATQREARAWWSRNRTVEALIGDPRSGG 85

Query: 54  FGFVCGVGEQP-LYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK 110
            G + G      L+  D+D    ++  A    D  +         +    + L  F +  
Sbjct: 86  IGVMLGDLGDGHLWCIDLDGCLGNDGAAPHAADVVKRFGSY--CEVSPSGRGLKLFFLIS 143

Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170
           +          T         G+ F     H + K      +            L E D 
Sbjct: 144 D--TDVAALGVTA--------GKAFAGPGAHSEMKLMVRGWSTLTEKAYSR-GALREIDA 192

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--GSHDE 228
             +  F         K  K         + + + +   ++   L    EEF +    H +
Sbjct: 193 GAVRWFIDVAGPAYQKQMKGGGERPRDESGSGQLFRLAKLAHDLEWLKEEFEDVIADHPD 252

Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
                 A  H  +   +  +  R W      ++  +                        
Sbjct: 253 ------AAAHVAKEGQRALD--RAWDNAAKPFEPTH------------------------ 280

Query: 289 SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348
                           + F        F+    G  L+      W++ D           
Sbjct: 281 ------------EDEPAGFDQDSVIRAFTKAYAGELLFDHHAGKWFRFDG---------Y 319

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
            +   + +                      +    +         + ++     ++  + 
Sbjct: 320 WRREETKLAL--------------------HYAREQSLKIASSEAKTLKTVPTWEAIERG 359

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE---- 464
             +   F++TSD+ +  +  LG  +G +DL TG+      E  I++ T    +  +    
Sbjct: 360 ARSVREFAVTSDVWNRDTMLLGTPNGTVDLRTGELRDARPEDRISRVTAVAPIPHDEFRA 419

Query: 465 --PSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
                 +L  +          + +  +  G +L G  + Q+ + + G GGSGK T +N +
Sbjct: 420 KRDCPRWLAFLDEALAGDAGAIRFLQQWCGYSLTGETREQKLVFVYGPGGSGKGTAINTV 479

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
               G+  V     +           +    L RL G+R+   SET +       +IK +
Sbjct: 480 GDILGDYAVNVGMETLTASKYE----RHTTELARLRGARMARASETEKGKAWAENRIKNL 535

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
           TG D +TAR    + + E    F   I  N    +R+ D A  RR++++PFD P    + 
Sbjct: 536 TGQDTITARFMRQDDF-EFAPEFKLTIFGNNRPSLRDVDAAIKRRFLILPFDHPPRRPNT 594

Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
             A  L+         W + G   +   GL   +P V   A +E     DT+  W+ D C
Sbjct: 595 KLADALKR-EWPGILAWLIDGCLDWQESGL--IVPPVMDAATKEYFAAEDTFAQWLADRC 651

Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
           D+G    + S +L  S+S Y       +       T    L Q+GF      ++ +    
Sbjct: 652 DVGPEFVDTSDNLWDSWSRYA--YGLGEEPGTKKGTFAETLSQRGFF-----KRDQIGRD 704

Query: 762 SKRIIKGLKLK 772
            KR  +GL+++
Sbjct: 705 RKRGYRGLRVR 715


>gi|327409707|ref|YP_004347127.1| putative primase [Lausannevirus]
 gi|326784881|gb|AEA07015.1| putative primase [Lausannevirus]
          Length = 902

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 113/647 (17%), Positives = 230/647 (35%), Gaps = 57/647 (8%)

Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF-LSCFGEEFYNGSHDEWIPVVMAV 236
           + I     K  K   P++            + +T   +     +    ++D+W+ V   +
Sbjct: 266 RGIIPSEKKMAKKKRPTRLVKTMEQIMEDIKMVTDSGILGMLNDSRAENYDDWMNVGWTL 325

Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIG-------DTAKKRSTFTS 289
            +   G  +  ++   +S + S +DE+   Y W+  + +  G               +  
Sbjct: 326 FNIGNGLPEALDLWIDFSSRASNFDEKKCEYVWEQMEMKGKGIGSLLQMAKNDNPEKYAE 385

Query: 290 LF-YHHGKLIPKGLLASRFSDA-YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
                    +   +   + + A   K + + Y        A +  WY+   +        
Sbjct: 386 WKTLKCKDDLDAAIKCPKPTHANIAKLIHTKYSDRFICADAKSNIWYEFRSHRWNKLDDA 445

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
            + +           + ++  LS        +  +          +  ++ +S A    +
Sbjct: 446 NELMRIISFELPDIFRLEIARLSA-ISSQGTDPNAQLTMKRCLDMQAKLQMDSFATGVMR 504

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
             +   +     + LD +   +G +DG++DL+ G     + + YI+ STG  + E   + 
Sbjct: 505 MCKRLFLNEKFLEKLDENRDIIGMEDGVVDLKLGIFRDGSPDDYISMSTGISYREFSETD 564

Query: 468 ----EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
               E  + +   F + ++     R V   + GGN+ +R     G G +GK+   NL++Y
Sbjct: 565 RAVVECREFLRKLFPNPKIRKCAIRMVSSCMQGGNRNKRIYVCTGKGHNGKTVFFNLLEY 624

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
            FG   +       ++  R   A  A P L R  G+R  +I E ++ +++N   +K+++G
Sbjct: 625 IFGQYLIKFPREMCLVG-RTASASSARPELARAPGARFAVIQEVHKGEKLNPGILKELSG 683

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDAS 642
            D    R  Y     +    FT F++ NK   V   D A W R   I F+    + +D  
Sbjct: 684 NDSFFVRSLYEKG-RDVKPQFTIFMMCNKPPSVPGSDQATWNRLRAILFESTFLSEQDDL 742

Query: 643 FAQKLET-----------------KYTLEAKKW-FLKGVKAYISKGLDVDIPEVCLKAKE 684
           +    E                       A  W  ++  +AY  +GL    PE       
Sbjct: 743 WIDDPEERKRLHMFKADPHFEEKIPELAHALFWICMQDFRAYKEEGL--CEPEEVTMTTN 800

Query: 685 EERQGTDTYQAWIDDCCDI-------GENLWEES---HSLAKSYSEYREQELNYDRKRIS 734
           + R   D  + +I DC +        GE+          L  +Y E+ ++         S
Sbjct: 801 KMRARNDPIRRYIRDCVEKIDKEELDGEDEEIPYVTVSELFNNYKEWYDENF----PSYS 856

Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
            + VT+   +K     +K + +  +       +  +L+   +  D+N
Sbjct: 857 AKKVTILKFRKQISRALKVQPVGGKK-----FEYYRLREQEDLEDEN 898


>gi|260161779|emb|CAZ39323.1| phage DNA polymerase [Streptococcus suis]
 gi|313575361|emb|CBR26890.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 761

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 118/579 (20%), Positives = 203/579 (35%), Gaps = 73/579 (12%)

Query: 244 SKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
            + ++     +++     D+   +  W +        T K    + +    + +     L
Sbjct: 220 QEARDGFDEQAQKCVPPLDKIELDTIWGS-AVRFYNRTIKTSKGYVAPDVFNRE----TL 274

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM------ 356
               +SD     + +        YT  T   Y         +  T  +    +       
Sbjct: 275 KPDDYSDVGEAGVLAREYGNRLAYTNATDYLY---------YDGTHWRENKQLALGAVVH 325

Query: 357 ---NFLVSMKEDVFDLSEEPEDNNKNSKSPR---------------------FWFNTDYR 392
                L      +    ++ + +  +  + +                     +    ++ 
Sbjct: 326 FTDEQLAEANALLESADKQLQSSGIDELTIKAGGKRLENAVETPLQLKYLKAYLAAKEFH 385

Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKEL 450
           +  ++        A    A  + S+    LDS    L   +   DL  G   + +   E 
Sbjct: 386 KFVMKHRDYKNLMAVYNTAKPMLSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNPED 445

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
           YITK T     +      + + ++ +F   +E++DY    +GMA +G    +  I   G 
Sbjct: 446 YITKITAVSPSDQG-MGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGG 504

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST  N I    G+     +  +  M N+       +P L  L G R+VI SE  E
Sbjct: 505 GANGKSTFWNTIARVLGSYSGKLSADALTMSNKR----NVSPELAELKGKRLVIASEMAE 560

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
              +N A +KQ+T  D + A   Y + +     S T  +  N    V   DD  WRR +V
Sbjct: 561 GMRLNTAVVKQITSTDEIQAEKKYKDPFH-FVPSHTLVLYTNHLPKVGANDDGTWRRLVV 619

Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           IPF+  I  R    +FA  L          W ++G +  I       +P     + +  R
Sbjct: 620 IPFNAKIIGRSDIKNFADYLYDNAAPAIMSWIIEGAEKAIKANFKTKVPTAVSASVKAYR 679

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +  D    ++ DCC +G+ L E+S  L   Y  Y  + + Y R   ST      L+Q GF
Sbjct: 680 EANDWLGHFLSDCCQVGDQLTEKSGELYSQYRAYCTKNMEYTR---STTDFYSALEQAGF 736

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
                     K       I GLKL      V+D  + +D
Sbjct: 737 K--------RKRTSKGNFILGLKL------VEDGYDFLD 761


>gi|327309735|ref|YP_004336634.1| P4 family phage/plasmid primase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326955377|gb|AEA29069.1| phage/plasmid primase, P4 family [Pseudonocardia dioxanivorans
           CB1190]
          Length = 868

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 180/487 (36%), Gaps = 37/487 (7%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF------- 358
            F+D  N                         +   Y+W                     
Sbjct: 16  TFNDMGNARRLVELCGDDVR----------HFRGTWYVWDGKRFARDQDYRVQEQAKRVP 65

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS-KAKSTAQSLEAGSIFSI 417
           L   K+    +S   E ++   K+         +  +   N  +  S  +        ++
Sbjct: 66  LEMRKQAYRAISASKELSHDERKAAETSARELLKFADASGNRLRLASMIELARTEPEITV 125

Query: 418 TS-DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
           T  D  DS       Q+G +DL TG+  + ++   IT+ +   +     S+ F   ++  
Sbjct: 126 TDADAFDSDPWAFNVQNGTIDLRTGELREHSRGDMITRISPATYDPDARSELFDKFLARI 185

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
                       CVG  L G     +     G G +GK+ L++ + +  G+ Y       
Sbjct: 186 QPDPVERRALQLCVGYTLTGFTGEAKLFTANGGGRNGKNVLLDTVAHLLGDYYRKAPAGF 245

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
                R  +   A+P +  + G+R+V+ SET   D +  +++K++TG   +TAR  YG+ 
Sbjct: 246 LTA--RKEDGTSASPDMADMRGARMVMASETERGDRLAESRVKELTGDRTITARFLYGD- 302

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL------E 648
           +     +F  +++ N    VR  D+  W R  +IPF + I    RD     KL      +
Sbjct: 303 FFSFRPTFKIWLLTNYRPSVRGTDEGIWSRLALIPFREYITPEERDPHLTDKLIGLFNGD 362

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
                    W ++G +A+ S    + +P+    A E+ R   D   A++ D C       
Sbjct: 363 PSDLSGVLTWAVEGARAWASNK-TLALPDTWRAAAEDYRVEQDLMGAFLSDHCIFRPGEI 421

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
             S  L   Y  +  Q   + R   S R  ++ LKQ+     +K + + ++   + +  G
Sbjct: 422 TTSGDLYAHYVWWCRQAGEHAR---SQRAFSIELKQR--PEYMKNKVLARKSDGRVVFDG 476

Query: 769 LK-LKPA 774
           ++ LKP 
Sbjct: 477 MRGLKPN 483


>gi|50914497|ref|YP_060469.1| Phage DNA polymerase [Streptococcus pyogenes MGAS10394]
 gi|40218553|gb|AAR83207.1| hypothetical phage protein [Streptococcus pyogenes]
 gi|50261598|gb|AAT72366.1| ATPase [Streptococcus pyogenes]
 gi|50903571|gb|AAT87286.1| Phage DNA polymerase [Streptococcus pyogenes MGAS10394]
          Length = 761

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 123/571 (21%), Positives = 202/571 (35%), Gaps = 57/571 (9%)

Query: 244 SKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
            + ++     +++     D+   +  W +       +   K S     +        + L
Sbjct: 220 QEARDGFDEQAQKCVPPLDKAELDTIWGS--AVRFYNRTIKTS---KSYVAPDAFNRETL 274

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL--------DKITAS 354
               +SD     + +        YT  T   Y  D  +                D+  A 
Sbjct: 275 KPDDYSDVGEAGVLAREYANKLAYTNATDYLY-YDGTHWRENKQLALGAVVHFTDEQLAE 333

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPR--------------FWFNTDYRRQNVEENS 400
            +  L S  + +     +        K                 +    ++ +  ++   
Sbjct: 334 AIALLESADKQLQSSGIDELTIKAGGKRLENAVETPLQLKYLKAYLAAKEFHKFVMKHRD 393

Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGT 458
                A    A  I S+    LDS    L   +   DL  G   + +   E YITK T  
Sbjct: 394 YKNLMAVYNTAKPILSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNPEDYITKITAV 453

Query: 459 PFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
              +      + + ++ +F   +E++DY    +GMA +G    +  I   G G +GKST 
Sbjct: 454 SPSDQG-MGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTF 512

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            N I    G+     +  +  M N+       +P L  L G R+VI SE  E   +N A 
Sbjct: 513 WNTIARVLGSYSGKLSADALTMSNKR----NVSPELAELKGKRLVIASEMAEGMRLNTAV 568

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           +KQ+T  D + A   Y + +     S T  +  N    V   DD  WRR +VIPF+  I 
Sbjct: 569 VKQITSTDEIQAEKKYKDPFH-FVPSHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKIT 627

Query: 638 NRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
            R    +FA  L          W ++G +  I      ++P     + +  R+  D    
Sbjct: 628 GRSDIKNFADHLYDNAAPAIMSWIIEGAEKAIKANFKTNVPTAVSSSVKAYREANDWLGH 687

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           ++ DCC +G+ L E+S  L   Y  Y  + + Y R   ST      L+Q GF        
Sbjct: 688 FLGDCCQVGDQLSEKSGELYSQYRAYCAKNMEYTR---STTDFYSALEQAGFK------- 737

Query: 756 IEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
             K       I GLKL      V+D  + +D
Sbjct: 738 -RKRTSKGNHILGLKL------VEDGYDFLD 761


>gi|313813468|gb|EFS51182.1| phage/plasmid primase, P4 family protein [Propionibacterium acnes
           HL025PA1]
          Length = 752

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 124/774 (16%), Positives = 237/774 (30%), Gaps = 82/774 (10%)

Query: 38  EQLLSSEKIDKLPACGFGFVCGVG-------EQPLYAFDID--SKDEKTANTFKDTFEIL 88
               S E++            G                DID    D        D    L
Sbjct: 27  TDQTSLEQVA-WLDHVAATYTGDRRSSASFISSDCVVMDIDNDHTDNPDEWITPDDLAEL 85

Query: 89  HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148
                              M         +    +    +    ++ V + I P T  + 
Sbjct: 86  -------------------MAGVEFMTATSRNHQKPKRTLSARPRFHVYFPISPVTDAD- 125

Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208
                  R           + ++   +F    T P             W +  +      
Sbjct: 126 -TYAGLKRRLAGRFGFFDPQALDA-GRFIYGTTNPETTIHNGTKLLDAWLDEADEIDVFA 183

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
              A     GE   N +   +   V+  + +T  +    +  R+ S       +      
Sbjct: 184 AFDASTQVIGEGSRNATLSRFAGRVLIRYGQTAQARDLFD--RKASLCEPPLSDHELESI 241

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF---- 324
           W +          + +  + S   +        L    F+D    +M +           
Sbjct: 242 WQS--ACRFAAKVEAQPGYLSPEAYAEL---TSLRPEDFTDVGQASMLTAEYSSRLAFTE 296

Query: 325 ---LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP-------- 373
                  +   W +       I     D+  A   + L   ++++               
Sbjct: 297 ATDWLVYEGGVWSESAPAAQGIAQELTDRQLAEAGHLLEKARDELMVTGANAVLAAASSK 356

Query: 374 -----EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL-EAGSIFSITSDLLDSSSR 427
                   +    + R + +       V +  ++++    L EA  +   T   LD+   
Sbjct: 357 AKALGGFTSPQRAAYRAFEDAKAYEAFVLKRRESRAITSCLREAHPMLLTTPARLDADPY 416

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
            L    G  D+  G +        ITK T     +   ++ +   ++ +F+   E++ Y 
Sbjct: 417 LLNTPGGTWDVRDGTRRDHNPLDLITKQTALDPTDTG-AEIWNRALNVFFQSDRELIGYV 475

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPE 545
            R VG+A +G    +  +   G G +GKST  N I    G     ++A+   I  NR   
Sbjct: 476 QRIVGLAAIGTVMVEALVIAYGDGRNGKSTFWNTIARVLGTYAGNMSADVLTIGGNR--- 532

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                P L    G +++I +E+ E   ++ + +KQ+   D + A   Y   ++    S T
Sbjct: 533 --NVKPELAEAKGKQLIIAAESEEGVRLSTSTVKQLAFTDQIYAEKKYKAPFA-FTPSHT 589

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGV 663
             +  N    V   D   WRR IVIPF+  I +     ++A  L          W ++G 
Sbjct: 590 LILYTNHLPRVGAMDAGIWRRLIVIPFNAVIESSSDVKNYADHLYETAGGAVLAWIMEGS 649

Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
           +   ++   +  P   + A    R+  + +  ++D  C++  +L E +  L + Y  + +
Sbjct: 650 RLIHAEDYQLAPPAQVVAASSAYREENNWFAQFLDARCEVDPSLSERAGDLYQEYRAWAQ 709

Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
               + R           L+Q GF          ++ K    + GL L   F S
Sbjct: 710 STSGWARPM---ADFNATLEQSGFE--------RRKSKHGMYVYGLALTSEFNS 752


>gi|168214579|ref|ZP_02640204.1| primase [Clostridium perfringens CPE str. F4969]
 gi|170713981|gb|EDT26163.1| primase [Clostridium perfringens CPE str. F4969]
          Length = 754

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 87/492 (17%), Positives = 175/492 (35%), Gaps = 30/492 (6%)

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
            T       +     +    +SD  N             +  +   WY        +W+ 
Sbjct: 284 LTKRTDEFVQYKDNIIYDFNWSDVGNAERLISIYGKDIKFNVNQGKWY--------VWNG 335

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
              ++  S        +  +    ++  + N            +  +  V  N       
Sbjct: 336 VNWELDNS-FKVENLYRRVLRKFQKDIVNINIQGDEQATSKQKEKAKAFVLRNETDGKIK 394

Query: 407 QSL-EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-EGE 464
             L +A +   +     D         +  ++L    + K  +   IT+ +   F  E +
Sbjct: 395 GVLNQAKTFQGVNFIESDKDDYLFNTPEATINLRNLNQKKHDRRDLITQCSNYSFNREND 454

Query: 465 PSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
               ++  ++  F   +E+++Y  + VG +L G    Q    + G G +GKST +  ++ 
Sbjct: 455 KCPNWIAFLNRIFCGDQELINYVQKAVGYSLTGDMSEQCLFMLWGGGANGKSTFVKALED 514

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G         + + +N       A   L RL   R+VI SE  E    N   +K ++ 
Sbjct: 515 IMGTYAATIKGETLMEKN---GQDGARGDLARLTNKRVVIASELQEGQVFNEPLLKVLSA 571

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDA 641
           G+ +  R  Y   +      F  +I+ NK   V+  D   WRR+ +IPF        +D 
Sbjct: 572 GETLPVRFMYQEEFM-LKPKFKLWIMTNKKPKVKGNDHGIWRRWRMIPFKYKFTEKEKDP 630

Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           +F ++           W + G + +  +G   + P+  ++A E+ +   D    +I+DCC
Sbjct: 631 NFYEEKLKPELEGILLWAITGYQMWKEQG--FEAPKEVMEAVEDYKMDMDQVARFIEDCC 688

Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
            I ++      ++   Y  +   E      +++   +  +LK+KGF        I K   
Sbjct: 689 FIRDDAECTGSAMYDEYLNWCINEGEN--YKMTNHKLAQDLKEKGF--------INKRRT 738

Query: 762 SKRIIKGLKLKP 773
           + +   G+ +  
Sbjct: 739 AGKYWIGIGIDS 750


>gi|15843066|ref|NP_338103.1| bacteriophage protein [Mycobacterium tuberculosis CDC1551]
 gi|308376126|ref|ZP_07446144.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu007]
 gi|308380119|ref|ZP_07669121.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu011]
 gi|308400808|ref|ZP_07493275.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu012]
 gi|13883410|gb|AAK47917.1| bacteriophage protein [Mycobacterium tuberculosis CDC1551]
 gi|308344231|gb|EFP33082.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu007]
 gi|308362562|gb|EFP51413.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu011]
 gi|308366214|gb|EFP55065.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu012]
          Length = 472

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 98/432 (22%), Positives = 158/432 (36%), Gaps = 28/432 (6%)

Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
             + W                 + E    LS+   D    +   +            E  
Sbjct: 60  GWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESA 108

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
           S          A   F+ T   LDS    L   +G LDL T +         ITK     
Sbjct: 109 SGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGA 168

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
           +     S  +   ++     E V  +  R  G+ LLG  +      + GVG +GKS    
Sbjct: 169 YQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDK 228

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
            I+YA G+          + +      G+     + L G R V +SE+ ++  +  + IK
Sbjct: 229 AIRYALGDYACTAEPDLFMHRENAHPTGE-----MDLRGVRWVAVSESEKDRRLAESTIK 283

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637
           ++TGGD + AR      + E   S TP ++ N    V   D A WRR  V+PF+  I   
Sbjct: 284 RLTGGDTIRARKM-RQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPAD 342

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
            +D     +L+         W + G   Y   GL    P+  L A    R+ +DT + +I
Sbjct: 343 EQDRELDARLQL-EADSILSWAVAGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFI 399

Query: 698 -DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
            D+C      L   +  L +++  +R QE       IS +    +L   G+    K    
Sbjct: 400 DDECVTSSPVLKATTTHLFEAWQRWRVQEG---VPEISRKAFGQSLDTHGYPVTDKAR-- 454

Query: 757 EKEWKSKRIIKG 768
           +  W++   ++G
Sbjct: 455 DGRWRAGIAVRG 466


>gi|15608720|ref|NP_216098.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|148661377|ref|YP_001282900.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 gi|167966959|ref|ZP_02549236.1| bacteriophage protein [Mycobacterium tuberculosis H37Ra]
 gi|215428058|ref|ZP_03425977.1| bacteriophage protein [Mycobacterium tuberculosis T92]
 gi|215430474|ref|ZP_03428393.1| bacteriophage protein [Mycobacterium tuberculosis EAS054]
 gi|260186531|ref|ZP_05764005.1| bacteriophage protein [Mycobacterium tuberculosis CPHL_A]
 gi|260200642|ref|ZP_05768133.1| bacteriophage protein [Mycobacterium tuberculosis T46]
 gi|289443035|ref|ZP_06432779.1| phi phage protein [Mycobacterium tuberculosis T46]
 gi|289447191|ref|ZP_06436935.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|289751280|ref|ZP_06510658.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
 gi|289753669|ref|ZP_06513047.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
 gi|306775768|ref|ZP_07414105.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu001]
 gi|306805291|ref|ZP_07441959.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu008]
 gi|306971876|ref|ZP_07484537.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu010]
 gi|2117255|emb|CAB09087.1| Probable phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
 gi|148505529|gb|ABQ73338.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
 gi|289415954|gb|EFD13194.1| phi phage protein [Mycobacterium tuberculosis T46]
 gi|289420149|gb|EFD17350.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
 gi|289691867|gb|EFD59296.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
 gi|289694256|gb|EFD61685.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
 gi|308215857|gb|EFO75256.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu001]
 gi|308348162|gb|EFP37013.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu008]
 gi|308358730|gb|EFP47581.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
           tuberculosis SUMu010]
 gi|323717855|gb|EGB27045.1| phiRv1 phage protein [Mycobacterium tuberculosis CDC1551A]
          Length = 471

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 98/432 (22%), Positives = 158/432 (36%), Gaps = 28/432 (6%)

Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
             + W                 + E    LS+   D    +   +            E  
Sbjct: 59  GWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESA 107

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
           S          A   F+ T   LDS    L   +G LDL T +         ITK     
Sbjct: 108 SGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGA 167

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
           +     S  +   ++     E V  +  R  G+ LLG  +      + GVG +GKS    
Sbjct: 168 YQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDK 227

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
            I+YA G+          + +      G+     + L G R V +SE+ ++  +  + IK
Sbjct: 228 AIRYALGDYACTAEPDLFMHRENAHPTGE-----MDLRGVRWVAVSESEKDRRLAESTIK 282

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637
           ++TGGD + AR      + E   S TP ++ N    V   D A WRR  V+PF+  I   
Sbjct: 283 RLTGGDTIRARKM-RQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPAD 341

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
            +D     +L+         W + G   Y   GL    P+  L A    R+ +DT + +I
Sbjct: 342 EQDRELDARLQL-EADSILSWAVAGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFI 398

Query: 698 -DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
            D+C      L   +  L +++  +R QE       IS +    +L   G+    K    
Sbjct: 399 DDECVTSSPVLKATTTHLFEAWQRWRVQEG---VPEISRKAFGQSLDTHGYPVTDKAR-- 453

Query: 757 EKEWKSKRIIKG 768
           +  W++   ++G
Sbjct: 454 DGRWRAGIAVRG 465


>gi|76786816|ref|YP_329358.1| prophage LambdaSa04, DNA primase [Streptococcus agalactiae A909]
 gi|76561873|gb|ABA44457.1| prophage LambdaSa04, DNA primase, P4 family [Streptococcus
           agalactiae A909]
          Length = 761

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 119/573 (20%), Positives = 192/573 (33%), Gaps = 67/573 (11%)

Query: 244 SKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
            + ++     + +     D+   +  W +        T K    + S            L
Sbjct: 220 QEARDGFDEQALKCDPPLDKTELDTIWGS-AVRFYNRTIKGSEGYVSP----EAFNRGEL 274

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA-----SIMN 357
               +SD     + +        YT  T             ++    K        +++ 
Sbjct: 275 KPDDYSDIGEAGVLAREYGEKLAYTNATD---------YLTFTGQYWKEDKQLAIGAVLE 325

Query: 358 FLVSMKEDVFDLSE------------EPEDNNKNSKSPRFWFNTDYRRQ----------- 394
           F+    ED  D  E            E           +       ++            
Sbjct: 326 FMDLQLEDASDKYEKVIKDLVNTGVSENLVREGGKALAKVIETPTQQKLYTTYLAARTYY 385

Query: 395 --NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKEL 450
              ++       TA    A  + +I    LD     L   +   DL  G     +   + 
Sbjct: 386 QFVMKRRDYRYITATHNTAKPMLAIDLSELDKDDMVLNTPEATYDLRIGLSGSHEHDPKD 445

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
           YITK T     +      + + ++ +F   +E++DY    +GMA +G    +  I   G 
Sbjct: 446 YITKMTTVSPGDQG-MGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGG 504

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST  N I    G+     +  +  M N+       +P L  L G R+VI SE  E
Sbjct: 505 GANGKSTFWNTIARVLGSYSGKLSADALTMSNKR----NVSPELAELKGKRLVIASEMAE 560

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
              +N A +KQ+T  D + A   Y + +     S T  +  N    V   DD  WRR +V
Sbjct: 561 GMRLNTAVVKQITSTDEIQAEKKYKDPFH-FVPSHTLVLYTNHLPKVGANDDGTWRRLVV 619

Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           IPF+  I  R    +FA  L          W ++G +  I       +P     + +  R
Sbjct: 620 IPFNAKITGRSDIKNFADYLYDHAAPAIMSWIIEGAEKAIKANFKTKVPAAVANSVKVYR 679

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +  D    ++ +CC++G+ L E+S  L   Y  Y  Q + Y R    T      L Q GF
Sbjct: 680 EANDWLGHFLSECCEVGDKLSEKSGELYSRYRAYCVQNMEYTRN---TTDFYAALAQAGF 736

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
                     K       I GLKL    +   D
Sbjct: 737 E--------RKRTNKGNFIMGLKLADDGDDFLD 761


>gi|167006280|ref|YP_001661503.1| hypothetical protein pSHK1.14 [Streptomyces sp. HK1]
 gi|115394141|gb|ABI97026.1| unknown [Streptomyces sp. HK1]
 gi|166162362|gb|ABY83483.1| hypothetical protein pSHK1.14 [Streptomyces sp. HK1]
          Length = 517

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 93/492 (18%), Positives = 175/492 (35%), Gaps = 37/492 (7%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
            G+     LL    +D  N  +F+      F +          +    Y W     K   
Sbjct: 39  QGQATAPALLPPMLTDRGNAKLFAQLYSDQFRHV---------EGLGWYCWDQYRWKRVG 89

Query: 354 SIMNFLVSMKEDVFDL-SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
                L +  +    + + +P       +  +        R+     S  K+     +A 
Sbjct: 90  GEKAALWAAGDMAEQMSATDPRGVFSEREIAQH-------RRRSMSTSGMKALLHQAKAA 142

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
              S+  D+LD  +  L    G++DL  G+  KP     +         +  P+  +   
Sbjct: 143 PALSLDPDVLDGDAYSLCTPAGVVDLRNGRLHKPDPLRDLHSRATNVAPQAMPTPRWHAF 202

Query: 473 VSGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
           +   F  +    E+ D+    +G ++ G   AQ    + G G +GKS L++++    G+ 
Sbjct: 203 LDDTFGDDAKGREMTDFLHLLLGYSITGDVGAQVLPFLWGKGANGKSVLLDVMIQVMGDY 262

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
                    + +    E    +  L  L G RI + SE   ND+ + A++K +TGGD + 
Sbjct: 263 ADAAPPGFLMDKGNFAE---HSTELTELHGRRIFVCSELKPNDKFDEARVKLLTGGDKIK 319

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646
           AR      Y     +   +++ N    V     A+WRR  +IPF++ +    +  + A +
Sbjct: 320 ARRM-RQDYFSFTPTHKLWLLGNHQPEVGTGGHAFWRRIRLIPFERVVVADRKIDNLAGE 378

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GE 705
           L  +       W ++G   Y++    +  P     A        D    ++++CC   G 
Sbjct: 379 LVQEEGPGILHWLIEGAIRYLTSRDPLAGPSSVRLATAAYETTEDHIGRFLNECCVRQGP 438

Query: 706 ---NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
              +L  E   L  +Y+ +   E        + R     ++Q     G+       +   
Sbjct: 439 DTGDLRVEQGLLYGTYTGWCSSEGIRAD---TARAFASRIRQ---EIGLASPAEMLKSSG 492

Query: 763 KRIIKGLKLKPA 774
           K+    L L P 
Sbjct: 493 KKYYPSLALLPD 504


>gi|31792768|ref|NP_855261.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
 gi|31618358|emb|CAD96276.1| Probable phiRv1 phage protein [Mycobacterium bovis AF2122/97]
          Length = 471

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 98/432 (22%), Positives = 158/432 (36%), Gaps = 28/432 (6%)

Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
             + W                 + E    LS+   D    +   +            E  
Sbjct: 59  GWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESA 107

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
           S          A   F+ T   LDS    L   +G LDL T +         ITK     
Sbjct: 108 SGVAGVLDLAAALVPFAATLADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGA 167

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
           +     S  +   ++     E V  +  R  G+ LLG  +      + GVG +GKS    
Sbjct: 168 YQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDK 227

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
            I+YA G+          + +      G+     + L G R V +SE+ ++  +  + IK
Sbjct: 228 AIRYALGDYACTAEPDLFMHRENAHPTGE-----MDLRGVRWVAVSESEKDRRLAESTIK 282

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637
           ++TGGD + AR      + E   S TP ++ N    V   D A WRR  V+PF+  I   
Sbjct: 283 RLTGGDTIRARKM-RQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPAD 341

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
            +D     +L+         W + G   Y   GL    P+  L A    R+ +DT + +I
Sbjct: 342 EQDRELDARLQL-EADSILSWAVAGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFI 398

Query: 698 -DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
            D+C      L   +  L +++  +R QE       IS +    +L   G+    K    
Sbjct: 399 DDECVTSSPVLKATTTHLFEAWQRWRVQEG---VPEISRKAFGQSLDTHGYPVTDKAR-- 453

Query: 757 EKEWKSKRIIKG 768
           +  W++   ++G
Sbjct: 454 DGRWRAGIAVRG 465


>gi|170730309|ref|YP_001775742.1| hypothetical protein Xfasm12_1160 [Xylella fastidiosa M12]
 gi|167965102|gb|ACA12112.1| phage-related protein [Xylella fastidiosa M12]
          Length = 842

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 91/509 (17%), Positives = 181/509 (35%), Gaps = 49/509 (9%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
             +           +D  N    + +     + +A+            ++W  T      
Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAE----------RWFVWEGTHWAHGM 402

Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411
                L   + + +    E+      +++  +          +   + S+ +ST ++  A
Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462

Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
              S+  + ++ LD+    L   +G +DL TG       E YIT+     F     + EF
Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEF 522

Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
           +  ++     E      + D+  R  G    G  +  +   + G+G +GKSTL++LI   
Sbjct: 523 ITTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGI 582

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G+   + A    +         +    +  L G R++ ++ET+E   +    +KQ TGG
Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637
           D + AR    + + E   +    ++ N    ++  D   W R ++I F            
Sbjct: 639 DSLKARHMRSD-FFEFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLISFKARFGTAEEIEA 697

Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
                  D    +KL          W + G   +   GL+   P +   A ++ +   D 
Sbjct: 698 GAAQYPIDHKITEKL-AAEREGVLAWIVAGAVEWCKNGLNP--PGIVRDASKDYQTEQDR 754

Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
              +I D C +G    E   +     L  +Y+++ +    Y    +S       L++   
Sbjct: 755 VTQFIKDECVLGMEHEEPLTAPMGGGLYPAYTQWCKDSGVY---PLSKTRFLGELERCVP 811

Query: 748 IGGIKREKIEKEWKSK--RIIKGLKLKPA 774
               KR     + K +   +I+G+ L  A
Sbjct: 812 KFRNKRGTRTVDGKRRELVVIQGIGLVDA 840


>gi|196885459|gb|ACG80592.1| primase/helicase [Acanthamoeba castellanii mamavirus]
          Length = 960

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/603 (16%), Positives = 190/603 (31%), Gaps = 52/603 (8%)

Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS---KTWTNNNNRQYTNREITAFLSCFGE 219
           PL  +  ++ + +     T      K +         +    + +         L     
Sbjct: 315 PLAIDAKLKKIKEKINNNTNNTNTHKNTAELGDHHFNFIKAVSEETLVE--AKNLVKLFS 372

Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIG 278
                 +  W  V   + +      +  E    +SK+    + +E     W   + +   
Sbjct: 373 VQRATDYHTWYQVGRCLSNI---DHRLLEDWITFSKKCPSKFKKEECERLWRNMNMKPSN 429

Query: 279 ---------DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329
                     +      +  +       + K  + +       K +   YK  +   +  
Sbjct: 430 YTMATLHYFASKDDPDKYFEMKKLKIDGLIKEGMEASH-HTIAKLLIEKYKFIYKCASIK 488

Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP--EDNNKNSKSPRFWF 387
              WY+   +                   +         L  E   +D     +      
Sbjct: 489 NGIWYEFRNHRWIEIDSAYTLRNLISEVLVNEYANRQRILFGEATRQDAENKKEKFNDAV 548

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447
           N     + +  N+      +     +        LD ++  +G ++G+ DLE G      
Sbjct: 549 NITKVIKQLNNNTFKNGVIKECADIAYDPNFLRNLDENNYLIGFENGVFDLEAGIFRDGC 608

Query: 448 KELYITKSTGTPFVEGEPSQE----FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF 503
            +  I+  T   ++E +   E        +      + + +Y    +   L G    + F
Sbjct: 609 PDDCISLCTNYKYIEIDEDDETFKNINGFLKKIQPDKSMREYILTLLSTCLSGTISEESF 668

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
             + G G +GKS LM L+KY  G+ Y    +   + + R   +  A+P L    G R   
Sbjct: 669 YVLTGSGANGKSKLMELLKYTLGDLYK-PMDIRLLTEKRSSSS-SASPELADKKGIRACP 726

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
             E   +DEIN   +K  TGGD + AR  Y          F PF++ N+   +++ DD  
Sbjct: 727 FDEPKASDEINTGFMKIFTGGDTIAARALYKEP-IYFKPQFKPFLLCNELPTIKSDDDGT 785

Query: 624 WRRYIVIPFDKPIANR-------------------DASFAQKLETKYTLEAKKWFLKGVK 664
           WRR  VIPF                          D S ++KL   +        LK  +
Sbjct: 786 WRRLKVIPFLSKFIKHSEATKKMKKEGLPKNHFWADTSLSEKLP-DWKQGFMCLLLKYFR 844

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYR 722
            Y   GL    P++  +   E R+  D +Q +I D     +N         L ++  E+ 
Sbjct: 845 KYRKHGL--IHPKLVTQHTVEYRKKCDVFQDFIGDYLVRVDNTKKGISVMDLYQNMREWY 902

Query: 723 EQE 725
           +  
Sbjct: 903 KSN 905


>gi|40807289|ref|NP_047955.2| gp9a [Streptomyces phage phiC31]
 gi|40313246|emb|CAA07134.2| gp9a [Streptomyces phage phiC31]
          Length = 805

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/471 (18%), Positives = 165/471 (35%), Gaps = 45/471 (9%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           SDA N      +  G   Y +             ++W       +A+ +   +       
Sbjct: 363 SDAMNAHALVAWTDGRIKYAS---------GLGYFVWDGVTWVKSATRVRQEIHAMGAAL 413

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            L+                       +     ++  +    L +     + ++  D+++ 
Sbjct: 414 VLAG-----------------CLPESRGFTMTTRIDALMTELRSVPSVHVEAEEFDANAH 456

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
            L   +G++DL TG+     K   +T S    +     +  +   +   F  + +++ Y 
Sbjct: 457 LLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEIFPNNADLVGYM 516

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
            R VG  + G    Q F  + G G +GKS     +   FG        A+   +      
Sbjct: 517 RRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGRITKTTPFATFEDKGNG--- 573

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           G     L  L GSR+V+ SE      ++ A +K++TG D +TAR      +     +F  
Sbjct: 574 GGIPNDLAALRGSRLVMASEGESGKPMSEAVLKRVTGKDKVTARFL-RQEFFTFAPTFLI 632

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVK 664
            +  N     ++ D+  WRR  +IPF +      RD    +KL    +     W ++G  
Sbjct: 633 MLATNHKPKFKSQDEGLWRRVKLIPFVRYFAPEERDYDLDRKL-RAESAGIVAWAVRGAV 691

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD-IGENLWEESHSLAKSYSEYRE 723
            + + GL    PE    A  E R  +D    +     D   ++          SY ++ E
Sbjct: 692 EWYANGLG--DPESISTATREYRATSDALAGFFPGVLDAADDSAIVSGADAYNSYRDWCE 749

Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
            E     +  S +     ++++G          +K+  +   + G+K   A
Sbjct: 750 AEGLKSTEVWSRKAFYGAMEERGIG--------KKKTNTGIALVGVKFADA 792


>gi|302876789|ref|YP_003845422.1| phage/plasmid primase, P4 family [Clostridium cellulovorans 743B]
 gi|307687470|ref|ZP_07629916.1| phage/plasmid primase, P4 family protein [Clostridium cellulovorans
           743B]
 gi|302579646|gb|ADL53658.1| phage/plasmid primase, P4 family [Clostridium cellulovorans 743B]
          Length = 755

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 185/565 (32%), Gaps = 51/565 (9%)

Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT-FDFEEIGDTAKKRSTFTSLFYHHG 295
           +  T  + +         K      +E     W +   F +                  G
Sbjct: 207 YGATDKAHEIFLEEAE--KCDPPLSDEELKTIWYSAVKFAKKIQGQDGYVPPDDYNDDFG 264

Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW----------- 344
                 L    +SD     +          +TA T  + + D                  
Sbjct: 265 GGEGDSLKPDDYSDVGQARVLCREYGDELKFTAATD-FIRFDGEVWVEDKQMAVGACVEF 323

Query: 345 --------SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396
                   +  L+++   +++    + E       +             ++      + +
Sbjct: 324 LDLQLADANDELERVRKQLID--AGIAESTVKAGSKAVAKEVEGDQLGLFYALLAAEKYM 381

Query: 397 ----EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKEL 450
               +       T+    A S+ +I    LD +   L       +LE G           
Sbjct: 382 AFTMKRRDYKYITSALNVAKSMVTIKVSDLDKNPVLLNTPFATYNLEKGMAGVQPHDPFD 441

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
            ITK T     +      +L+ +  +F   +E+++Y    +G+A +G    +  I   G 
Sbjct: 442 LITKITEVSPGDEG-MDIWLEALETFFCGDQELIEYVQMVIGLAAIGKVYEEFIIIAYGD 500

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST  N I    G      +     M N+      A P +  L G R++I SE  E
Sbjct: 501 GANGKSTFWNTIARVLGTYSGKISSDILTMGNKV----NAQPEMAELKGKRLIIASEMQE 556

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
              +N A +KQ+   D + A   Y + +     +    +  N    V   DD  WRR  V
Sbjct: 557 GVRLNTAMVKQLCSTDEIQACKKYKDPFH-FMPAHQVVLYTNHLPRVGANDDGIWRRLKV 615

Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           IPF+  I       ++A  L         KW ++G +        V  P+V   A E  R
Sbjct: 616 IPFNAKIKGNSDIKNYADYLFENAGPAIMKWIIEGAEKVSKANHKVADPKVVRDAVEAYR 675

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +  D    +I +CC++ ++  E+S    + Y  Y  Q   Y R   ST      + + GF
Sbjct: 676 EDNDWLGHFIAECCEVDDSFEEKSGEFYQQYRAYCIQNGEYIR---STTDFYSAIDKAGF 732

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLK 772
                      +     ++ G+KLK
Sbjct: 733 --------YRHKTNKGVMVHGVKLK 749


>gi|256847830|ref|ZP_05553275.1| phage DNA polymerase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715519|gb|EEU30495.1| phage DNA polymerase [Lactobacillus coleohominis 101-4-CHN]
          Length = 751

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 118/667 (17%), Positives = 211/667 (31%), Gaps = 51/667 (7%)

Query: 141 HPKTKKE-YTWTTPP-HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198
           H KT +  +    P       +    L  E  EY   F                    W 
Sbjct: 103 HHKTPRPKFHVYFPITEITDAKTYAELKHEIQEYFPYFDDNALDAARFVFGVPSTKAIWH 162

Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP---VVMAVHHETRGSSKGKEIARRWSK 255
             +           + +       +               +      +   +      +K
Sbjct: 163 EGSQAVDKFMMAQRYFAQQNIGSIHEGKRNATLSHFAGRIIMRLGNTAEARQAFQEEAAK 222

Query: 256 QGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
                 ++     W +    + G     +  +  +           L    +SD     +
Sbjct: 223 CDPPLSKQELKNIWHS--ATKFGQRMASQKGY--IPPEEYNQPNDDLQPDDYSDTGESYV 278

Query: 316 FSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
           F    K    YT        D K W + +   +       DK        + +  + +  
Sbjct: 279 FVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDKQLTDAQLRVTNSYKKIQQ 338

Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS--------- 419
                             FN +      +  +     A  L+  S   I           
Sbjct: 339 NGVTSALQAMGKTKASRTFNDEQLAAFKDYENAKAYEAFILKERSTRGINGILTNSRPKL 398

Query: 420 ----DLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
               +  D+    L   +G  +L+ G     +   +  ITKST       + +  + + +
Sbjct: 399 VKEINDFDADPFLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCVPG-NQGASLWQEAL 457

Query: 474 SGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           + +F   + +++Y    VG+  +G    +  I   G G +GKST  N I    G      
Sbjct: 458 TTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHL 517

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
           +  +     R        P +  + G R++I +E  E   +N + +KQ+   D + A   
Sbjct: 518 SADALTTGVRR----NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKK 573

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETK 650
           Y   +S    S T  +  N    V   D+  WRR IVIPF   IA R+   ++AQ L  +
Sbjct: 574 YMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKRNDIKNYAQYLTEQ 632

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
                 +W ++G +  I +   +  P    KA        D    ++++ C++  +  ++
Sbjct: 633 AGPAVLQWIIEGAQRIIQQNYQLTTPVAVTKAVRSYHANNDWLGHFLNENCELDPSYEQK 692

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
           S  L + Y EY +    Y R   ST      LK  GF    K+        + R IKGL+
Sbjct: 693 SGDLYQKYREYCQSIGEYIR---STSDFYTALKNAGFQRQHKQ--------NGRFIKGLR 741

Query: 771 LKPAFES 777
           LK   + 
Sbjct: 742 LKVKADE 748


>gi|158318012|ref|YP_001510520.1| P4 family phage/plasmid primase [Frankia sp. EAN1pec]
 gi|158113417|gb|ABW15614.1| phage/plasmid primase, P4 family [Frankia sp. EAN1pec]
          Length = 725

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 178/483 (36%), Gaps = 44/483 (9%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           +D  N               +D  +W++        W+    +      +   + K    
Sbjct: 277 TDDANALRLVAEYGNTIRRVSDMGSWWR--------WTGKRWERDHDDAHVREAAKILAR 328

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            L  E  +  K              ++    ++      +  ++    ++ +  LD+   
Sbjct: 329 KLPAETLEQRKY-------------KRASLSSTGLSGATRVAQSDPRVTVLARDLDAHPH 375

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486
            L  Q G++DL TG        L +T+ T            + + ++  F    E++ Y 
Sbjct: 376 LLNTQSGVVDLVTGAVKPHDPWLMLTRITPLDVDTEATHPMWSEFLAETFGGDTELVAYV 435

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-----GNQYVINAEASDIMQN 541
               G+ALLG  +      + G G +GK  ++ +++        G   V   +   +  N
Sbjct: 436 QSLCGLALLGDVREHVLPLMYGAGANGKGVILLVLQGLLGIADTGGYSVSAPDGFLMAGN 495

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
                      + RL G+R+V+ SE       + AK+K++TGGD +T R   G+ + +  
Sbjct: 496 ----GTAHPTEIARLRGARLVVCSEQTSGRRFDEAKVKRLTGGDLLTGRFMRGD-FFDFE 550

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659
            S    +  N    V     ++WRR  +IPFD  +    RD     KL +        W 
Sbjct: 551 PSHLTVVATNHLPEVIEGGPSFWRRARLIPFDHVVPPERRDTELHTKLLSAEGPAILGWM 610

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
           ++G    I  GL    P   L A ++ R   D+  +++ D C +  + W         Y 
Sbjct: 611 VRGAMIVIGSGL--VDPPRVLAATDDYRISEDSLASFVRDDCIVNPHAWCTVPDFRTRYE 668

Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
            +  +        +S + VT  L +      ++ +++ +   S+RI +G+ L  A    D
Sbjct: 669 AHCAE---MGVDPLSAKAVTTRLTR---EFPVQSDRLSR--PSRRIYRGIGLVDADAESD 720

Query: 780 DNS 782
           + +
Sbjct: 721 EET 723


>gi|77412077|ref|ZP_00788403.1| bacteriophage protein, putative [Streptococcus agalactiae CJB111]
 gi|77161882|gb|EAO72867.1| bacteriophage protein, putative [Streptococcus agalactiae CJB111]
          Length = 759

 Score =  301 bits (771), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 113/566 (19%), Positives = 200/566 (35%), Gaps = 57/566 (10%)

Query: 245 KGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
           + ++     + +     ++   +  W +        T K    + S      +     + 
Sbjct: 220 EARDGFDEQALKCVPPLEKAELDTIWGS-AVRFYNKTIKNSKDYKSP----EEFQRGEMQ 274

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
              +SD     + +        +T +T  +   D  +         +    I  FL    
Sbjct: 275 PDDYSDIGEAGLLAREFGDKIAFTRETD-YLAYDGKHWVEDEQLAMRQ---IHQFLDMQL 330

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ-------------------------NVEE 398
           E             K S  P        ++                           ++ 
Sbjct: 331 EVAVTKLNNATQKLKQSGIPEMLIQQGGKKLENAIETPIQLVAYQDYKKAFEFYKFVMKY 390

Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKST 456
                 +A +  A  +  ++   LD +   L   +  +DL  G     +     Y+TK T
Sbjct: 391 RDYRNLSAIAKMAKHMVRMSVSDLDKNELLLNTPEATIDLSQGLSGIREHDSADYLTKMT 450

Query: 457 GTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
                +      + + ++ +F +  ++++Y    VGMA +G    +  I   G G +GKS
Sbjct: 451 NASPSDKGD-GLWQETLATFFCDDTDLINYVQEIVGMAAIGKVYQEHMIIAYGSGANGKS 509

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
           T  N I    GN     +  +  M  R       +P +  L G R++I SE +E   +N 
Sbjct: 510 TFWNTIARVLGNYSGKLSAEALTMSVRR----NVSPEMAELKGKRLIIASEMSEGMRLNT 565

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           A +KQ+   D + A   Y   +     S T  +  N    V   DD  WRR IVIPF+  
Sbjct: 566 AMVKQLCSTDEILAEKKYKAPFH-FVPSHTLVLYTNHLPKVGANDDGIWRRLIVIPFNAK 624

Query: 636 IANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
           I  R    +FA  L  +       W ++G +  I     + +P+V   +    R+  D  
Sbjct: 625 ITGRSDIKNFADYLYNEAAPAIMSWIIEGAEKAIKANFKLILPQVVADSVSAYREANDWM 684

Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
             ++ DCC+IG++L E+S  L  +Y  +  +   Y R   ST      L   GF      
Sbjct: 685 GQFLGDCCEIGDHLTEKSGELYSAYRAHCARINEYTR---STTDFYTALANAGFT----- 736

Query: 754 EKIEKEWKSKRIIKGLKLKPAFESVD 779
              +K      ++KGL+LK   + +D
Sbjct: 737 ---KKRTNKGVMVKGLQLKLEDDFLD 759


>gi|259502601|ref|ZP_05745503.1| P4 family prophage LambdaSa04 [Lactobacillus antri DSM 16041]
 gi|259169416|gb|EEW53911.1| P4 family prophage LambdaSa04 [Lactobacillus antri DSM 16041]
          Length = 751

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 110/570 (19%), Positives = 192/570 (33%), Gaps = 46/570 (8%)

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
              +      +   +      +K      ++     W +    + G     +  +  +  
Sbjct: 200 GRIIMRLGNTAEAQQAFQEEAAKCDPPLSKQELKNIWHS--ATKFGQRMASQKGY--IPP 255

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWS 345
                    L    +SD     +F    K    YT        D K W + +   +    
Sbjct: 256 EEYNQPNDDLQPDDYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQ 315

Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
              DK        + +  + +                    FN +      +  +     
Sbjct: 316 RFTDKQLTDAQLRVTNSYKKIQQNGVTSALQAMGKTKASRTFNDEQLAAFKDYENAKAYE 375

Query: 406 AQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQK--VKPTKEL 450
           A  L+  S   I               +  D++   L    G  +L  G     +   + 
Sbjct: 376 AFILKERSTRGINGILTNSRPKLVKEINEFDANPFLLNTPTGPFNLRKGMHGQQEIQADE 435

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
            ITKST         S  + + ++ +F   + +++Y    VG+  +G    +  I   G 
Sbjct: 436 LITKSTSCVPGSQGAS-LWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGS 494

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST  N I    G      +  +     R        P +  + G R++I +E  E
Sbjct: 495 GRNGKSTFWNTIANVLGTYTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEE 550

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
              +N + +KQ+   D + A   Y   +S    S T  +  N    V   D+  WRR IV
Sbjct: 551 GKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIV 609

Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           IPF   IA R+   ++AQ L  K      +W ++G +  I +   +  P    KA     
Sbjct: 610 IPFKATIAKRNDIKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYQLTTPAAVTKAVRAYH 669

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
              D    ++++ C++  +  ++S  L + Y EY +    Y R   ST      LK  GF
Sbjct: 670 ADNDWLGHFLNENCELNPSYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTALKNAGF 726

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
               K+        + R IKGL+LK   + 
Sbjct: 727 QRQHKQ--------NGRFIKGLRLKVDDDE 748


>gi|71276703|ref|ZP_00652972.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
 gi|71901935|ref|ZP_00683989.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
 gi|71162495|gb|EAO12228.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
 gi|71728295|gb|EAO30472.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
          Length = 843

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 91/510 (17%), Positives = 183/510 (35%), Gaps = 50/510 (9%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
             +           +D  N    + +     + +AD            ++W  T      
Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAD----------RWFVWEGTHWAHGT 402

Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEA 411
                L   + + +    E+      +++  +          +   + S+ +ST ++  A
Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAVALEAWGKKSEMRSTVEAAMA 462

Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
              S+  + ++ LD+    L   +G +DL TG       E YIT+     +     +  F
Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVLVNYTPDAAAPVF 522

Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
              ++     E      + D+  R  G    G  +  +   + G+G +GKSTL++LI   
Sbjct: 523 KKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGI 582

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G+   + A    +         +    +  L G R++ ++ET+E   +    +KQ TGG
Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637
           D + AR    + + E   +    ++ N    ++  D   W R ++IPF            
Sbjct: 639 DSLKARHMRSD-FFEFRPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEA 697

Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
                  D    +KL          W + G   +   GL+    E+   A ++ +   D 
Sbjct: 698 GAAQYPIDHKITEKL-AAEREGVLAWIVAGAVEWCKNGLNPT--EIVRDASKDYQTEQDR 754

Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQK-- 745
              +I D C +G    E+  +     L  +Y+++ ++   Y    +S       L++   
Sbjct: 755 VTQFIKDECVLGMEHEEKISTPMGGGLYPAYTQWCKESGVYA---LSKTRFLGELERCVP 811

Query: 746 GFIGGIKREKIEKEWKSKR-IIKGLKLKPA 774
            F      E +E   + +  +I+G+ L  A
Sbjct: 812 KFGKREALETVEVGKRRRVLLIQGIGLVDA 841


>gi|325478724|gb|EGC81835.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 742

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 116/570 (20%), Positives = 208/570 (36%), Gaps = 63/570 (11%)

Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296
           +  T  + +  +  ++ S       ++     W +               F         
Sbjct: 204 YGNTNEARELFD--KKASLCSPPLPDDELEQIWRS------------ACKFYKKVAASED 249

Query: 297 LIP-------KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS---- 345
            +P         L  S FSD     +F    +    ++  T  +   + +          
Sbjct: 250 YVPPEEYTEGINLRPSEFSDIGQAEVFVREYQDRIRFSPST-GFLVYNDSYWEESELKAQ 308

Query: 346 ----LTLDKITASIMNFLVSMKEDVFD-------------LSEEPEDNNKNSKSPRFWFN 388
                 + K    I N L+ M ED+                + E  D ++ S   +    
Sbjct: 309 GYSQDLVLKQIEEIDNELLKMDEDIKKSGIRDIMSSMSEKKAMEVFDKSQKSIYYKLTSL 368

Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
             Y++  V+        A   E+  +  I    LD+    L      +DL+TG+      
Sbjct: 369 EAYKKYAVKRGDTRAIHATLKESKPMLEIDQRELDTDEFLLNTPSFTVDLKTGECRDHKA 428

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
           E YITK T     +      +LD +  +F +  E+++Y  +  G++L+G    +  I   
Sbjct: 429 EDYITKETSVDPSDEN-MDIWLDALETFFVKDSELIEYVQKVAGISLIGKVYIEALIIAY 487

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G G +GKST  N I           +     + ++      A P L    G R++I +E 
Sbjct: 488 GDGRNGKSTFWNTISRVLNLYSGSISADILTVNSKR----NAKPELAETRGKRLLIAAEL 543

Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
            E   +N + +KQ+   D + A   Y + + +   S T  +  N    V   D+  WRR 
Sbjct: 544 QEGLRLNTSNVKQLCSTDEIVAEKKYRDPF-KFIPSHTLVLYTNHLPKVGALDEGTWRRL 602

Query: 628 IVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
           IVIPF+  I       ++   L  K      KW ++G K  I +     +P+    A  E
Sbjct: 603 IVIPFEAKIEGSSDIKNYTDYLVDKAGGAVLKWLIEGAKKAIDEDFKFSLPKKVADAINE 662

Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            ++  + ++ ++++CC+I  +  E+S  + + Y  Y  +  +Y R   ST      L   
Sbjct: 663 YKESNNWFKHFLNECCEIDSSYEEKSGEVYQEYRAYCLRTGDYVR---STTDFYSALSSN 719

Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
           GF+         ++     +I GLKLK  F
Sbjct: 720 GFM--------RRKTNQGIVINGLKLKSDF 741


>gi|238854132|ref|ZP_04644479.1| phage DNA polymerase, ATPase domain [Lactobacillus gasseri 202-4]
 gi|238833208|gb|EEQ25498.1| phage DNA polymerase, ATPase domain [Lactobacillus gasseri 202-4]
          Length = 782

 Score =  301 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 110/569 (19%), Positives = 192/569 (33%), Gaps = 47/569 (8%)

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
              +          +      +K      E+     W +    + G     +  +  +  
Sbjct: 233 GRIIMRLGNTPEARQAFQDEAAKCEPPLGEQELRTIWHS--AIKFGHRMASKKGY--IPP 288

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWS 345
                    L    +SD     +F    K    YT        D K W + +   +    
Sbjct: 289 EEYNQPNDDLHPYDYSDTGESYVFVNNCKDRVCYTNQSGFMWFDGKIWQESEPLALGEVQ 348

Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
              DK  A     +    + +                    FN D +    E  +     
Sbjct: 349 RFTDKQLADAQLRVTKAYQVIQQNGVTSALQTMGKTKASRTFNDDQQATFKEYQNAKAYE 408

Query: 406 AQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQK--VKPTKEL 450
           A  L+  S   I               +  D++   L   DG  +L+ G     +     
Sbjct: 409 AFILKERSTRGINGILTNARPKLVKEINEFDANPFLLNTPDGPYNLKQGIHGQQEIQASD 468

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
            ITKST         S  + + ++ +F     +++Y    VG+  +G    +  I   G 
Sbjct: 469 LITKSTSCVPGSQGNS-IWQEALNTFFCNDLALINYVQEIVGLVAIGQVYLEALIIAYGS 527

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST  N I    G+     +  +     R        P +  + G R++I +E  E
Sbjct: 528 GRNGKSTFWNTIANVLGSYTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEE 583

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
              +N + +KQ+   D + A   Y   +S    S T  +  N    V   D+  WRR IV
Sbjct: 584 GKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIV 642

Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           IPF   IA  +   ++AQ L  +      +W ++G +  I +   +  P    KA ++  
Sbjct: 643 IPFKATIAKHNDIKNYAQYLTEQAGPAVLQWIIEGAQRIIQQNYQLTTPAAVTKAVKDYH 702

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
              D    ++++ C++  +  ++S  L + Y EY +    Y R   ST      LK  GF
Sbjct: 703 ADNDWLGHFLNENCELDSSYQQKSGDLYQKYREYCQGIGEYTR---STTDFYTALKNAGF 759

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLK-PAF 775
                     +   +   ++GL+LK   F
Sbjct: 760 --------QRQRKNTGSYVRGLRLKASEF 780


>gi|146277397|ref|YP_001167556.1| hypothetical protein Rsph17025_1354 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555638|gb|ABP70251.1| phage/plasmid primase, P4 family [Rhodobacter sphaeroides ATCC
           17025]
          Length = 470

 Score =  301 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 89/472 (18%), Positives = 167/472 (35%), Gaps = 35/472 (7%)

Query: 302 LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
           L     ++     MF+        +  +   W   +            K           
Sbjct: 31  LPDDVLTEDAVALMFTAQYGQRARFDHEMGRWVMWEP------DALFWKQDR-------- 76

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
                    +      ++        N     + V   S          A  + ++T ++
Sbjct: 77  --------VQLAAHWCRDLARDASMGNAPKVLERVRRKSFLGGVEAMCRADPVHAVTHEV 128

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESE 480
            D     LG     +DL TG+   P  E  IT+              +   +     E +
Sbjct: 129 WDPDPMLLGCPGVTVDLRTGKMRAPIPEDMITRQAAVAPDPDADCPNWKSFIRSVTREDD 188

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           ++  +    +G +L G  K  + + I G GG+GKS L++ +    G+   + +  +    
Sbjct: 189 DLERFLQAFLGYSLTGSIKEHQMLFIHGNGGNGKSLLLSTVMGIMGDYAQMASMDTFASS 248

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
                  + +  L  + G+R+V +SE ++    N  ++ QMTGGD + AR    + + E 
Sbjct: 249 RYE----RHSTDLAAMRGARVVGVSEVSQGVGWNQQRLAQMTGGDRVRARFMRQDEF-EY 303

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
              F   +V N    + + ++A  RR  ++PF       D   A KLE        +W +
Sbjct: 304 HPQFKLIVVGNHKPELSHVNEAMRRRMNIVPFTWKPEVPDQELALKLE-PEWPAILQWLI 362

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
           +G   +   GL    P+V  +  EE  +  DT+  W+++CC +          L   Y  
Sbjct: 363 RGCLEWQEHGLR--KPQVICRETEEYFEEQDTFAQWLEECCIVDRRDKNCWDVLVDLYHS 420

Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
           ++           + +T    L + GF    K    +   KS R+  G++L+
Sbjct: 421 WKTFAEARLEPAGTAKTFGERLGECGFETAFK----KIAGKSARVRLGVQLR 468


>gi|116630098|ref|YP_815270.1| phage DNA polymerase [Lactobacillus gasseri ATCC 33323]
 gi|116095680|gb|ABJ60832.1| Phage DNA polymerase, ATPase domain [Lactobacillus gasseri ATCC
           33323]
          Length = 788

 Score =  301 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 110/569 (19%), Positives = 192/569 (33%), Gaps = 47/569 (8%)

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
              +          +      +K      E+     W +    + G     +  +  +  
Sbjct: 239 GRIIMRLGNTPEARQAFQDEAAKCEPPLGEQELRTIWHS--AIKFGHRMASKKGY--IPP 294

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWS 345
                    L    +SD     +F    K    YT        D K W + +   +    
Sbjct: 295 EEYNQPNDDLHPYDYSDTGESYVFVNNCKDRVCYTNQSGFMWFDGKIWQESEPLALGEVQ 354

Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
              DK  A     +    + +                    FN D +    E  +     
Sbjct: 355 RFTDKQLADAQLRVTKAYQVIQQNGVTSALQTMGKTKASRTFNDDQQATFKEYQNAKAYE 414

Query: 406 AQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQK--VKPTKEL 450
           A  L+  S   I               +  D++   L   DG  +L+ G     +     
Sbjct: 415 AFILKERSTRGINGILTNARPKLVKEINEFDANPFLLNTPDGPYNLKQGIHGQQEIQASD 474

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
            ITKST         S  + + ++ +F     +++Y    VG+  +G    +  I   G 
Sbjct: 475 LITKSTSCVPGSQGNS-IWQEALNTFFCNDLALINYVQEIVGLVAIGQVYLEALIIAYGS 533

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST  N I    G+     +  +     R        P +  + G R++I +E  E
Sbjct: 534 GRNGKSTFWNTIANVLGSYTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEE 589

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
              +N + +KQ+   D + A   Y   +S    S T  +  N    V   D+  WRR IV
Sbjct: 590 GKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIV 648

Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           IPF   IA  +   ++AQ L  +      +W ++G +  I +   +  P    KA ++  
Sbjct: 649 IPFKATIAKHNDIKNYAQYLTEQAGPAVLQWIIEGAQRIIQQNYQLTTPAAVTKAVKDYH 708

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
              D    ++++ C++  +  ++S  L + Y EY +    Y R   ST      LK  GF
Sbjct: 709 ADNDWLGHFLNENCELDSSYQQKSGDLYQKYREYCQGIGEYTR---STTDFYTALKNAGF 765

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLK-PAF 775
                     +   +   ++GL+LK   F
Sbjct: 766 --------QRQRKNTGSYVRGLRLKASEF 786


>gi|322511112|gb|ADX06425.1| putative VV D5 family helicase [Organic Lake phycodnavirus 2]
          Length = 824

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 107/582 (18%), Positives = 214/582 (36%), Gaps = 46/582 (7%)

Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259
           +   +Y        +      +  GS+++WI V MA+ +    S K      + S Q  +
Sbjct: 234 SIEEEYIKDTHNYTMILDESYYGEGSYNKWIKVGMALKNT---SEKLFISWLKISSQSPS 290

Query: 260 YDEE---NFNYKWDTFDFEE-------IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
           +D        +KW+ FD  +                 +  +            L +    
Sbjct: 291 FDWGNVSELFHKWNHFDERDLSYRSIIYWAKESSMEKYNEVRNKSLDKYIHNSLMNVTHW 350

Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
                +  IYK+ +         WY  ++N                  F     +  +  
Sbjct: 351 DLANTLNQIYKENYKCVNIKHSVWYSFEENRWIENDSGTSLRNLLSTKFYNIYFK--YVQ 408

Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
               E N  + +S     N     + ++ +S+  +  +            + LD++   +
Sbjct: 409 KRLKEGNKDSEESKNIAGNFSKLAKCLKTSSEKNNVMKESCELFYDKEFYNKLDTNPYLV 468

Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVE--------GEPSQEFLDLVSGYFESEE 481
           G ++G++D++  +  K ++  YI K+T   ++          E   E    +   F  ++
Sbjct: 469 GCKNGVVDIKQKEFRKGSQNDYIHKTTNIDYMPLQHYQEVSPEIIDELNTFMYQLFPEQD 528

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           + +Y    +   L+G N  Q F    GVG +GKS L++L+    G+       ++ I Q 
Sbjct: 529 LREYMWEHLASTLIGTNNNQTFNIYLGVGANGKSILVDLMSKILGDY-KGTVPSTLITQK 587

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
           R    G  +  + +L+G R  ++ E ++ D IN   +K++TGGD +  R  + ++     
Sbjct: 588 R-TSIGSTSSEVYQLIGRRYAVMQELSKGDTINEGIMKEITGGDPIQCRALFKDS-VTFI 645

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF----------DKPIANRDASFAQKLETKY 651
             F   +  N    V++ DD  WRR  V  F          D+    +D  +  K++   
Sbjct: 646 PQFKLVVCTNVLFDVKSNDDGTWRRIRVCEFKSKFTDHPYEDRAFPEKDYPYQFKIDKNL 705

Query: 652 TLEAKKWF-----LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
             + K W      +   KA+ ++G  +D P   L+  E  R+G D    +         N
Sbjct: 706 NQKFKYWAPVFFSMLVEKAFQTQGKVIDRP-CVLEPTENYRKGQDVILEFCHSQIVEEPN 764

Query: 707 L---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
                 +   +   ++++ + E       IS+R +   L++K
Sbjct: 765 DALGSLKIGMVNTIFNDWFKNEYGKTSH-ISSRELREYLEKK 805


>gi|304439202|ref|ZP_07399120.1| P4 family prophage LambdaSa04 [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372334|gb|EFM25922.1| P4 family prophage LambdaSa04 [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 742

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 115/570 (20%), Positives = 214/570 (37%), Gaps = 63/570 (11%)

Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296
           + +T  + +  +  ++ S      ++E     W +               F         
Sbjct: 204 YGKTDEARELFD--KKASLCSPPLEDEELEQIWKS------------ACKFYKKVAASED 249

Query: 297 LIP-------KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS---- 345
            +P         L  S FSD     +F    +    ++  T  +   + +          
Sbjct: 250 YVPPEEYTEGINLRPSEFSDIGQAEVFVREYQDRIRFSPST-GFLVYNDSYWEESELKAQ 308

Query: 346 --------LTLDKITASIMNFLVSMK-----EDVFDLSEEPE----DNNKNSKSPRFWFN 388
                     L++I    +     +K     E +  +SE+      ++N+ S   +    
Sbjct: 309 GCSQELVLKQLEEIDNGFVKMEEDIKKSGVRETISSMSEKKALASFNDNQKSLYYKLISL 368

Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
             Y++  V+        A   E+  +  I    LD+    L      +DL+TG+      
Sbjct: 369 EAYKKYAVKRGDTRAIHATLKESKPMLEIDQRELDTDEFLLNTPSYTVDLKTGECRDHKA 428

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
           E Y+TK T     +      ++D ++ +F +  E+++Y  +  G++L+G    +  I   
Sbjct: 429 EDYLTKETSVDPSDEN-IDIWIDALNTFFVKDSELIEYVQKVAGISLIGKVYIEALIIAY 487

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G G +GKST  N I           +     + ++      A P L    G R++I +E 
Sbjct: 488 GDGRNGKSTFWNTISRVLNLYSGSISADILTVNSKR----NAKPELAETRGKRLLIAAEL 543

Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
            E   +N + +KQ+   D + A   Y + + +   S T  +  N    V   D+  WRR 
Sbjct: 544 QEGLRLNTSNVKQLCSTDEIVAEKKYRDPF-KFIPSHTLVLYTNHLPKVGALDEGTWRRL 602

Query: 628 IVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
           IVIPF+  I       ++   L  K      KW ++G K  I +     +P+    A  E
Sbjct: 603 IVIPFEAKIEGSSDIKNYTDYLVDKAGGAVLKWLIEGAKKAIDEDFKFSLPKKVADAINE 662

Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            ++  + ++ ++++CC+I  +  E+S  + + Y  Y  +  +Y R   ST      L   
Sbjct: 663 YKESNNWFKHFLNECCEIDSSYEEKSGEVYQEYRAYCLRIGDYVR---STTDFYSALSSN 719

Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
           GF     R+ I+        I+GLKLK  F
Sbjct: 720 GFNRVKLRDGIK--------IQGLKLKSDF 741


>gi|322510700|gb|ADX06014.1| putative VV D5 family helicase [Organic Lake phycodnavirus 1]
          Length = 891

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 104/592 (17%), Positives = 215/592 (36%), Gaps = 53/592 (8%)

Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252
                    + Q+        L      +  GS+++W+ V MA+ +    S K      +
Sbjct: 295 KQFIDNILIDEQHIKDTHHYCLLLDDSFYGEGSYNKWVKVGMALKNT---SPKLFITWVK 351

Query: 253 WSKQGSTYDEE---NFNYKWDTFDFEE--------IGDTAKKRSTFTSLFYHHGKLIPKG 301
            S + + ++ +   +   KW +F  ++                  +  +F    +     
Sbjct: 352 LSSKSAIFEWDSISDMYNKWSSFKQDDSLTHRSIIYWCKESNNDGYLEVFNQSIQKYIHY 411

Query: 302 LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
                        ++ +YK+     +  +  WY+ D N        +   T         
Sbjct: 412 SFHHNTDYDIANVLYQLYKESFVCVSIKSNIWYEFDDNRWIENDSGISLRTKLSSEIYNL 471

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
               V  L  + +DN +  ++   +       + ++  +   +  +  +     S    +
Sbjct: 472 FFRFVKTLERQTDDNEEKKENSSKFSKI---SKTLKTTNDKNNIMKESKEIFYDSAFYKM 528

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLV 473
           LDS    +G ++G++D++     K     YI  +T   +   E  +E          + +
Sbjct: 529 LDSKPYLIGCRNGVVDVQNRLFRKGIHSDYIHNTTNNDYYPLEYYKEKSPDVIAEIDEFM 588

Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
              F   E+ +Y    +  A++G N+ Q F    GVG +GKS L+ L+    G+      
Sbjct: 589 YQLFPETELREYMWEHLASAIIGTNQNQTFNIYLGVGANGKSKLVELMGKVLGDY-KGTV 647

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
            ++ I Q R    G  +  + +L+G R  ++ E ++ D IN   +K++TGGD +  R  +
Sbjct: 648 PSTLITQKR-TSIGNTSSEVHQLIGKRYAVMQELSKGDTINEGIMKEITGGDPIQCRALF 706

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS----------F 643
            ++       F   +  N    V++ DD  WRR  V  F         +          +
Sbjct: 707 KDS-VTFIPQFKLVVCTNTLFDVKSNDDGTWRRIRVCEFKSKFTENPYNDKLFPKEYYPY 765

Query: 644 AQKLETKYTLEAKKWF-----LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW-- 696
             K++TK   + + W      +    A+ ++G   D P   L+   + R G D    +  
Sbjct: 766 QFKIDTKLDEKFEYWVPVFFSMLVQVAFETQGKVKDRP-CVLEPTNKYRDGQDILLDFCQ 824

Query: 697 ---IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
              +++ CD G NL      +   + ++   E       IS + +   +++K
Sbjct: 825 SNIVEEPCDSG-NLKI--GIVNDVFKQWMINEYG-KNATISNKELREYMEKK 872


>gi|317501095|ref|ZP_07959301.1| prophage protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897482|gb|EFV19547.1| prophage protein [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 757

 Score =  299 bits (766), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 108/540 (20%), Positives = 192/540 (35%), Gaps = 49/540 (9%)

Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317
              D    N  W +        + +       ++       P+      FSD     + S
Sbjct: 229 PPLDNSELNTIWHSAQRFYSKISHEDGYVPPEVYNDENSYKPE-----DFSDVGQAEVLS 283

Query: 318 IYKKGHFLYTADTKAWYKKDKNNVY--------IWSLTLDKITASIMNFLVSMKEDVFD- 368
            Y      Y+  T  + +   +           +      +  A     ++   + + + 
Sbjct: 284 KYFANELRYSPATH-FIRYSDHYWQETEPGAQAVAHELTRRQLAEANRNMMEALQKLKNC 342

Query: 369 ------------LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
                        +E+   + +      F     Y+   V        T+   E   +  
Sbjct: 343 GAQEILDNTSKAKAEQLMSDEQMEAYQEFLAAKAYQSFAVRRRDSKNITSTLKETHPMLE 402

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
           I+   LD+    L   +   DL  G     + + + +ITK T         +Q + D + 
Sbjct: 403 ISPRDLDADCFLLCTPEATYDLRKGMAGAREHSADDFITKITSVSPGSKG-AQLWQDNLD 461

Query: 475 GYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
             F+  ++++DY     G+A +G    +  I   G G +GKST  N I    G      +
Sbjct: 462 LIFQKDQQLIDYVQMICGLAAIGKVFVEALIIAYGDGRNGKSTFWNAISRVLGLYSGNIS 521

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
             +  +  R        P +  + G R++I +E  E   +N + +KQ+   D + A   Y
Sbjct: 522 ADTLTVGCRR----NIKPEMAEVKGKRLLIAAEMQEGARLNDSTVKQLCSTDDVFAEKKY 577

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKY 651
            + +S      T  +  N    V   DD  WRR IVIPF+  I  +    ++ + L    
Sbjct: 578 KDPFS-FKPCHTLVLYTNHLPRVSASDDGIWRRLIVIPFNAKIEGKADIKNYGEYLYENA 636

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                 W ++G K  I+    + +P+   KA +E R   D +  ++D+ CD+ E+  E S
Sbjct: 637 GESILAWIIEGAKKVIALDYQIPVPDCVTKAIDEYRSQNDWFGHFLDEKCDVDESFKESS 696

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
            +L ++Y  Y      Y R   ST      L++ GF               KR  KGLK+
Sbjct: 697 SALYQAYRNYSLDCNEYVR---STADFYFALEKAGFERLTL--------NRKRYFKGLKI 745


>gi|114765603|ref|ZP_01444704.1| hypothetical protein 1100011001288_R2601_22901 [Pelagibaca
           bermudensis HTCC2601]
 gi|114542052|gb|EAU45085.1| hypothetical protein R2601_22901 [Roseovarius sp. HTCC2601]
          Length = 605

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 101/538 (18%), Positives = 186/538 (34%), Gaps = 71/538 (13%)

Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL------DKI 351
           +          D  N      Y     L+      WY+   N        L       KI
Sbjct: 56  LEAEAAHFPLHDHGNGQRLLHYYGEDVLFVPRL-GWYRWQGNRWLADEDELTVRRDAQKI 114

Query: 352 TASIMNFLV--------------------SMKEDVFDLSEEPEDNNKNSKSP-------- 383
           +A I+  +                      ++E       +    +++ +          
Sbjct: 115 SARILAEIEYLTLEPWEEERVQLARDTAGQLRELERRKPADLSQEDRDRRRALLQYSNQA 174

Query: 384 ------RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL- 436
                 +      ++       + +K T   LEA    +     L++    +  ++G L 
Sbjct: 175 SEILDRQAARKKAHKAHARASGNSSKITNMLLEAKPEVACLIGDLNADPLAVNVKNGTLK 234

Query: 437 ---DLETGQKV-------------KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
              DL+                  K  +E  I+K     +        +   +     S 
Sbjct: 235 FRLDLDPHDAEWGDVGPSWKVTLEKHRREDRISKLIPVEYDPDAKCPHWQAFLDRVQPSR 294

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           ++  +  R VG  L G    Q+ +   G G +GKST ++ +   F +          +  
Sbjct: 295 DMQVFLQRYVGYCLTGKTTEQKLVFNYGGGRNGKSTFVDTLAKIFADY-GTTVPIETLTG 353

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
               +   A P L+RL G+R V  SE  +   +  A IK +TGG+ +  R      + E 
Sbjct: 354 AEQRKGSDATPDLVRLPGARFVRASEPEQGTRMKEAMIKALTGGEAIMIRRM-MQEFVEV 412

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKW 658
              F   I  N    +R  DD  WRR +++P+ + I     D +   KL          W
Sbjct: 413 TPEFKLMISGNHKPEIRGSDDGIWRRVLLVPWLEQIPEEEVDPTLPDKLW-AEAPGILAW 471

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAK 716
            ++G  A+   GL   IP+   +A +E RQ +D  + ++   C+I    + +E+S  L  
Sbjct: 472 AVQGYLAWAEGGL--SIPDAVRQATDEYRQESDKLRMFLQSECEITGLPDHFEKSSELRD 529

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQK-GFIGGIKREKIEKEWKSKRIIKGLKLKP 773
           +++ +    L+       +RT+   LK + G + G   E+     +S     G+++K 
Sbjct: 530 AFNGW---LLDLGDAAWGSRTIARALKDRAGVVKGPNGEQFRPVKRSDTGYSGIRIKE 584


>gi|91787211|ref|YP_548163.1| Phage/plasmid primase P4-like protein [Polaromonas sp. JS666]
 gi|91696436|gb|ABE43265.1| Phage/plasmid primase P4-like protein [Polaromonas sp. JS666]
          Length = 771

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 103/788 (13%), Positives = 226/788 (28%), Gaps = 83/788 (10%)

Query: 12  QAIHNGFKLIPLRLGDKRPQRLGKW---EEQLLSSEKIDKLPA--CGFGFVCGVGEQPLY 66
             +  GF L+P+  G K P R   W   E  + +SE+        C  G        P  
Sbjct: 27  AYLAAGFALVPIPHGLKGP-RAAGWNLRENAITTSEQAQAQLNGSCNIGLAHAYSNPPTC 85

Query: 67  AFDIDSKDEKTANTFKD--TFEILHGTPI---VRIGQKPKILIPFRMNKE------GIKK 115
           A DID+         +     + L   P    +  G+  +  + +R+ +          +
Sbjct: 86  ALDIDNMSLARPWFAERGIDLDALLNAPGAVRIHSGRPGRAKLLYRLPQPLPSCTLPWGE 145

Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRF-KVEDTPLLSEEDVEYLF 174
            +               Q  +  + HP T + Y W         + D PL +        
Sbjct: 146 LRCASGNGTTW------QDVLPPSTHPDTGRPYAWIGDIANIQPIPDAPLSAWRQQLAAK 199

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
              +   VP  +                           L     E  +           
Sbjct: 200 GRKEPHAVPCAQR------------------------DDLPPRFAELLHADPKLRTRWDG 235

Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH 294
                   S  G +++         +++         F   +     +    +T      
Sbjct: 236 ETGGLNDASRSGLDMSLASLMVMRGFNDHEIATALRAFAHGKAAQDGRGDHDYTGPLL-- 293

Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
                  L A R       A  +           D  A     + + Y W     +  A 
Sbjct: 294 -----AKLRAQRTLSRSEPAWTAHRLVAEKFTAEDGAALLLHWRGDFYGWRAGAWRSMAP 348

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
                  ++  ++      +   KN   P F  N       +         A        
Sbjct: 349 -----ADLEAVIYAYLGGAQYLGKNGAEP-FGPNRARVGDVMAALRATAHLASHHAPPCW 402

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLV 473
            +      D+    L   +GI+ L +        +L+ T      +         +L  +
Sbjct: 403 LNEREGDPDA-RDLLVMANGIMHLPSRTLRPHDAQLFTTTGLPFAYDANAEPPMAWLRFL 461

Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
              +  + E  +      G  L   +  Q+ + + G   +GK T + +++   G    + 
Sbjct: 462 RELWPDDAESRETLQEFFGYLLTADSSRQKILMVVGPKRAGKGTAIKVMRALLGEANCVG 521

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN----AAKIKQMTGGDCMT 588
                       ++ + N  L  L+  R+ +IS+   +  ++    A ++  ++G D +T
Sbjct: 522 PTL---------DSLRTNFGLQPLIEKRLAVISDARLSGRVDQQALAERLLAVSGEDTLT 572

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648
               + + ++         ++ N+   + +   A   R+IV+   +     +        
Sbjct: 573 VDRKHISAWTG-RLGVRFVLLTNELPRIADSSGALASRFIVLRLTRSWLGSEDLGLADRL 631

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
            +       W L G++    +G     P    +   E         A++ + C +     
Sbjct: 632 LRELPAILNWSLNGLERLCQRG-QFRQPAAASELVRELEDLGSPVGAFLRESCVVTPGAE 690

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
            E   L +++  + +          +  T   +L+    +  ++      E + +R  +G
Sbjct: 691 VERGRLFQAWRLWCQAHG--WEHHGTEATFGRDLRAA--LPDLQTHHPRVEGRQRRFYRG 746

Query: 769 LKLKPAFE 776
           + L  +++
Sbjct: 747 VGLADSWQ 754


>gi|167746058|ref|ZP_02418185.1| hypothetical protein ANACAC_00753 [Anaerostipes caccae DSM 14662]
 gi|167654573|gb|EDR98702.1| hypothetical protein ANACAC_00753 [Anaerostipes caccae DSM 14662]
          Length = 747

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/599 (18%), Positives = 204/599 (34%), Gaps = 49/599 (8%)

Query: 203 RQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHHETRGSSKGKEIARRWSKQG-ST 259
            ++ +    A      +    GS +  +       +      + K  +I    ++     
Sbjct: 169 EEFLDELDFAEYDKATQGITEGSRNSTMSHIAGRLIKRYGN-TEKAHDIYLEKAQLCNPP 227

Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIY 319
            ++      W +    + G   + +  + S    +       L    +SD     + S  
Sbjct: 228 LEDSELALIWSS--AVKFGKKVQSQVGYVSPEEFNKGF---SLKPDDYSDIGQAKVLSRE 282

Query: 320 KKGHFLY-------TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL--- 369
             G  ++         D   W +  +  V      LD+     +  +   K+ + D    
Sbjct: 283 YAGELVFTDSTDYMRYDGTHWAESKQMAVGACEEFLDEQLKEAIAAVEKAKKMLLDAGID 342

Query: 370 ----------SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
                      E+  D         F   + Y    ++       T+    A  +     
Sbjct: 343 KDTVMAGGKALEKAIDEGSEKAFKEFVIASKYYAFVMKRRDMKFVTSALQAAKPMLLKKI 402

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE- 478
              DS    L   D   DL+ G   +      ITK T       E    + D +  +F  
Sbjct: 403 ADFDSQEFLLNAPDATYDLQDGSSKEHAAADLITKMTAVSPS-TEGMDLWKDALDSFFCC 461

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +E++DY  + VG++ +G    +  +   G G +GKST  N I    G      +  +  
Sbjct: 462 DKELIDYVQQIVGLSAIGKVYVEALVIAYGEGSNGKSTFWNTIARVLGTYSGTISADALT 521

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
           +  +        P +  L G R+VI +E  E   +N + +KQ+   D +TA   Y + + 
Sbjct: 522 VGCKR----NVKPEMAELKGKRLVIAAELEEGMRLNTSIVKQLCSTDEVTAEKKYKDPF- 576

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAK 656
           +   + T  +  N    V   DD  WRR IVIPF+  I       ++A  L         
Sbjct: 577 KYVPTHTLVLYTNHLPRVGANDDGIWRRLIVIPFNAKITGSSDRKNYADYLYENAGGAVL 636

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
            W + G    I     +  P+V   A  + R+  D +  ++++CC++     ++S    +
Sbjct: 637 TWIIDGAAKAIKNKYKLKTPKVVEDAINKYRENNDWFSTFVEECCEVDATYTQKSGEFYQ 696

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
            Y  Y  +   Y R   ST      L+  GF          K+ K    + G++LK  F
Sbjct: 697 EYRSYCARTGEYTR---STTDFYTALENAGFN--------RKKTKGCNYVLGIRLKSDF 744


>gi|297587097|ref|ZP_06945742.1| P4 family prophage LambdaSa04 [Finegoldia magna ATCC 53516]
 gi|297575078|gb|EFH93797.1| P4 family prophage LambdaSa04 [Finegoldia magna ATCC 53516]
          Length = 733

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/553 (17%), Positives = 189/553 (34%), Gaps = 34/553 (6%)

Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296
           +  T  + +  +  ++ S       ++     W +    +          +     ++ +
Sbjct: 204 YGNTDEARELFD--KKASLCSPPLPDDELEQIWRS--ACKFYKKVAASEDYVPPEEYNER 259

Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----LTLDKIT 352
                    + +D     +F+ + K   +YT     W                    +  
Sbjct: 260 YEEYKP--EKLTDIAMAEIFTKHNKDKAIYTISQ-GWLYWTGKKWEDSELKVMSLYMETA 316

Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----S 408
             ++       ++ +    + E      +  +     +  +  +    K     +     
Sbjct: 317 KKVLENASIEFKETYQELADAEMMGSKEEKAQAKLKINSAKAYLNFAKKMNDHGKVSGIL 376

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
             A S+  + ++ LD+ +  L    G++DL+T +  +     Y  K T     +      
Sbjct: 377 KLAKSLLEVKNEKLDADAFILNTPVGVIDLKTSEIKEHDPSYYCAKITALAPSKDN-MDM 435

Query: 469 FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           ++  +       +E +++     G  L+G    +  +   G GG+GKST+ N   +  G+
Sbjct: 436 WIATLRDVTGGDDEFINFLKFHAGSTLIGHVYEEALLIAYGDGGNGKSTVFNSEAHVLGD 495

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
                   S   + +          L  L G R ++ SET E   ++++ +KQ+   D +
Sbjct: 496 YAGKIPAESLTTRAK-----NVKVDLAELCGKRFILASETEEGQRLSSSMLKQIASVDDI 550

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
           +A   Y   +S    + +  +  N    V + D   WRR +V PF   I N    +  KL
Sbjct: 551 SAERKYYAPFS-FTPTHSTILYTNHLPKVGSNDRGTWRRIVVAPFSVAIKNPKTDYIDKL 609

Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
             K      +W ++G K YI  G       V   AK+  ++  D    +I D C  G N 
Sbjct: 610 LEKAGEAILQWMIEGAKEYIDAGFKYPKCNVVDDAKKSYKEENDWINHFISDKCIKGTNY 669

Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
            E S  L + Y E+      Y R     R  +  L  +G+         +K         
Sbjct: 670 KEMSARLYQVYREWAGSNGEYIRN---NRDFSRALIAEGYE--------KKRTNRGIEWG 718

Query: 768 GLKLKPAFESVDD 780
           G+ +    ES DD
Sbjct: 719 GITINDLMESEDD 731


>gi|297242715|ref|ZP_06926653.1| phage/plasmid DNA primase [Gardnerella vaginalis AMD]
 gi|296888926|gb|EFH27660.1| phage/plasmid DNA primase [Gardnerella vaginalis AMD]
          Length = 737

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 106/588 (18%), Positives = 200/588 (34%), Gaps = 34/588 (5%)

Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHHETRGSSKGKEIARRWSKQGSTYD 261
            + + E  +      EE  +G  +  +       +          ++      +      
Sbjct: 171 DFLSEEDFSEFDAGTEEIPSGQRNSRLSHIAGKLIKRYGATDETHEKFLSEAERCNPPLP 230

Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
           +   +  W  +  ++ G     +  +     +      +       +D     +F+ + K
Sbjct: 231 DAELSKIW--YSAKKFGLKVASQEGYIPPSEYGKSY--EEYKPDDLTDIAMAEVFAKHNK 286

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK----EDVFDLSEEPEDNN 377
              +YT     W            L + K+   I   ++       +  ++   + E + 
Sbjct: 287 NKAVYTMSA-GWLYWTGKKWEASELKVMKLYMLIAKKVLKNAGIEFKTAYEEFVQAESSG 345

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSITSDLLDSSSRFLGEQD 433
              ++ +     +  +Q +    K    ++       A S+  + ++ LD  +  L    
Sbjct: 346 DKEQADKAKSEVNQAKQYLSFAKKMNDHSKVSGILKLAKSMLEVANEGLDRDAFILNTPC 405

Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGM 492
           GI+DL+TG+        Y TK T            +   +       +E   +     G 
Sbjct: 406 GIVDLKTGELKAHDPCSYCTKMTAVCPSREN-MGLWQTTLDMVTAGDKEFQTFLQSHAGS 464

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
            L+G    +  + + G GG+GKST+ N   +  G+        S   + +          
Sbjct: 465 TLIGQVFEESLLLVYGSGGNGKSTVFNAEAHVLGDYAGKIPAESLTTRAK-----NVKVD 519

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           L  L G R ++ SET E   ++ + +KQ+   D ++A   Y   +     S +  +  N 
Sbjct: 520 LAELCGKRFILASETEEGQRLSISMLKQIASVDDISAERKYYAPF-TFTPSHSTILYTNH 578

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              V + D   WRR  V PF K I N    +  +L  K      +W ++G K YI     
Sbjct: 579 LPKVGSNDKGTWRRIFVAPFTKEIKNPKTDYVDELLQKAGGAILQWMIEGAKLYIQNSYK 638

Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
               +V  +AK+  R   D    +I D C  G N  E S SL  SY ++      Y R  
Sbjct: 639 FPTCKVVEQAKDAYRAENDWIGHFITDYCIKGVNETEMSRSLYLSYRQWANLNGEYVRN- 697

Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
              R  +  L   G+         +K         GL + P  ++ +D
Sbjct: 698 --DRDFSKALLLAGYS--------KKRTGKGYQWCGLSINPNLQAQED 735


>gi|301057712|ref|ZP_07198785.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
           proteobacterium NaphS2]
 gi|300448173|gb|EFK11865.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
           proteobacterium NaphS2]
          Length = 489

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 176/480 (36%), Gaps = 32/480 (6%)

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW-SLTLDKITASIMNFLVSMKEDVF 367
           +  +  +F +  +  FL+   +  W     +   +  +    K    I  +  +   D+ 
Sbjct: 22  ELGDGILFGLLHENRFLFNETSGEWLVYSGHKWELDLTGEAQKAVEYIAVWYSNRASDLA 81

Query: 368 DLSEEPEDNNKNSKSPRFWF-----NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
              +  E +   +K  +        N   ++   +   +A              ++ D L
Sbjct: 82  ARIDRGEKDGDKTKIEQLKAEQRLCNKKAKKLRTQRGRQACLHLAHTNYERPLQVSGDAL 141

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYFESEE 481
           D     L   DG++DLETG+      +  IT  + T +      +  F   ++   +  E
Sbjct: 142 DLHPMRLACTDGVIDLETGELRPGRPQDLITLGSPTNWHGLHASAPNFERTINEIVDDPE 201

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           V ++  R  G    G       + + G G +GK+ L+  + +  G           + Q 
Sbjct: 202 VSEFLQRFFGYCCTGLVTESALVVLEGQGRNGKTLLVETLAHVLGPLAGSIPSEMLLDQG 261

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
           R   A    PSL+ L G R    SE  EN   +++++K ++G D +  R  +    +   
Sbjct: 262 RFTNADSPTPSLMSLRGLRCAFASEVEENRRFSSSRVKWLSGSDSLVGRFPHDRRPTRFR 321

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----------DASFAQKLETKY 651
            +    ++ N+       D A+W R  ++PF     +           D S A+KL  + 
Sbjct: 322 PTHKLILLINERPNAPMNDYAFWERLHMVPFPFSFVDHEPKAANERRADKSLAEKL-KEE 380

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                 W ++G   +  +GL    PE   K  EE ++  D  + ++D+ C +     E S
Sbjct: 381 APGILAWLVRGCLKWQKQGLSP--PEKIRKNTEEYKRSEDLLETFLDEHCILDPKEEEAS 438

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
             L  ++  +  +     RK +S +     + +K           E++  +     GL+L
Sbjct: 439 ADLYDAFKSWWSEN--VSRKTLSQKKFGRLMGRK----------FERKKTNTIKYVGLRL 486


>gi|320013062|gb|ADW07911.1| phage/plasmid primase, P4 family [Streptomyces flavogriseus ATCC
           33331]
          Length = 515

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 96/543 (17%), Positives = 187/543 (34%), Gaps = 45/543 (8%)

Query: 252 RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311
             S + S +D      +   F+         ++                 LL    +D  
Sbjct: 1   MSSAESSRFDAAAAAQQMLDFEAAAPAWVPPQQ------VQAPAMTDTPVLLPPMLTDRG 54

Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL-S 370
           N  +F+      F +          +    Y W     K        L +  +    +  
Sbjct: 55  NAKLFAQLYSDQFRHV---------EGLGWYCWDQFRWKRVGGEKAALWAAGDMAEQMSP 105

Query: 371 EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG 430
            +P     + +  +        R+     S  K+     +A  + S+  D+LD  +  L 
Sbjct: 106 TDPRGVFSDREIAQH-------RRRTMSTSGMKALLHQAKAAPVLSLDPDVLDGDAYSLC 158

Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE----SEEVMDYF 486
              G++DL  G+  KP     +         +  P+  +   +   F      +E++D+ 
Sbjct: 159 TPAGVVDLRNGRLHKPNPLRDLHSRATNVAPQATPTPRWHAFLDDTFGADTKGQEMIDFL 218

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
              +G ++ G   AQ    + G G +GKS L++++    G+          + +    E 
Sbjct: 219 HLLLGYSITGDVGAQVLPFLWGKGANGKSVLLDVMIQVMGDYADAAPPGFLMDKGNFAE- 277

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
              +  L  L G RI + SE   ND+ + A++K +TGGD + AR      Y     +   
Sbjct: 278 --HSTELTELHGRRIFVCSELKPNDKFDEARVKLLTGGDKIKARRM-RQDYFSFTPTHKL 334

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664
           +++ N    V     A+WRR  +IPF++ +A   +  + A +L  +       W ++G  
Sbjct: 335 WLLGNHQPEVGTGGHAFWRRIRLIPFERVVAADRKIDNLAGELVEEEGPGILHWLIQGAM 394

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC-----DIGENLWEESHSLAKSYS 719
            Y++    +  P     A        D    ++ + C     + G +L  E   L  +Y+
Sbjct: 395 RYLTSRDPLTGPSSVRLATAAYETTEDHIGRFLSEACARQGPETG-DLRVEQGLLYATYT 453

Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
            +   E        + R     ++Q     G+       +   K+    + L P      
Sbjct: 454 AWCSSEGIRAD---TARAFAGRIRQ---EVGLASPAEMLKSSGKKYYPAMALLPDDLVRP 507

Query: 780 DNS 782
           D +
Sbjct: 508 DGT 510


>gi|332186933|ref|ZP_08388674.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Sphingomonas sp. S17]
 gi|332012943|gb|EGI55007.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Sphingomonas sp. S17]
          Length = 947

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 92/505 (18%), Positives = 175/505 (34%), Gaps = 76/505 (15%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL-----V 360
             +D  N   F       F +          ++   ++W     ++ +   + +     +
Sbjct: 415 SLTDLGNAERFRARHGWRFRFC---------NELGWFVWDGRRWELLSEEKDKVPGKVSL 465

Query: 361 SMKEDVFDLSEEPE------------DNNKNSKSPRFWFNTDYRR--------------- 393
           ++ + V  +  E +             +  + +      +    R               
Sbjct: 466 AVFDTVRAIRNEADLVEASGRREDAPKDATDEEKAARLDHVVGWRGSGDNKLPIYYSETI 525

Query: 394 ----QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV----- 444
               ++ E  S+    A   +A    +I +D +D+    +   +G L L    K      
Sbjct: 526 RAHAKSSEGVSRLACIANIAKAFGEIAIKADAMDADRMAINVMNGTLRLTQEGKRWMARD 585

Query: 445 -----------------KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFT 487
                                   I+K     F        F   +S     + +  +  
Sbjct: 586 GELKLISQSKEWGLVLTDHQPTDLISKIANVSFKPEASCPVFDGFLSTVQPDQAMRRFLG 645

Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
           +  G++L G    Q+     G G +GKST+++      G+     A  + + Q R  + G
Sbjct: 646 QWHGLSLTGDISEQKLAFYHGKGRNGKSTMVDACSEVAGDYGGSVAIETFLDQGRGRKGG 705

Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
           +A P L RL G R +  SE  +  ++  A IK +TGG+ + AR      +     SF   
Sbjct: 706 EATPDLARLPGIRFLRTSEPEKGAKLAEALIKLITGGELIDARHLNK-GFFSFLPSFKVT 764

Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKA 665
           I  N    +   DD  WRR +++P+D  IA    D    +KL  K       W LKG+  
Sbjct: 765 ISGNHKPKITGHDDGIWRRVMLVPWDVQIAKEDIDRHLPEKL-RKEKSGILNWMLKGLID 823

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
           +   GL    PE  L A  + R+ +D    ++D+C    E    +S  L   ++ + +  
Sbjct: 824 WRMNGL--VEPESVLAATAKYREQSDQLGRFLDECTKPVEGARSKSSVLFALFTAWAKAT 881

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGG 750
              + +    +  +  ++ +GF   
Sbjct: 882 GAGEWQP---QGFSKAMEDRGFEKK 903



 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 69/277 (24%), Gaps = 51/277 (18%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQ-------------RLGKWEEQLLSSEKI----DKLP 50
           E A      G+ + P     KRP                G   +     ++I     K P
Sbjct: 12  EAALDYARRGWPVFPCDPRTKRPYLAMDRDEEGKPIKGTGGVTKATTDEDQIRAWWRKWP 71

Query: 51  ACGFGFVCGVGEQPLYAFDI-----DSKDEK--------------TANTFKDTFE-ILHG 90
               G   G     L   D      D  D K                +   +  E  +  
Sbjct: 72  RAMIGVAVGRA--GLIVIDFDPGVYDVIDRKTKEITGQEEWTLEQLKDALAERMEGEMLP 129

Query: 91  TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIH-----PKTK 145
             +  + +       F+M     +    T S   H+D+ G G Y +A   H         
Sbjct: 130 ETLTSVTRSGGEHQWFKMPAG--EPIGNTGSLPNHIDVRGLGGYVIAPPSHFEGNDDDAP 187

Query: 146 KEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQY 205
            +Y W       ++ + P      +          TV   +            + + R+Y
Sbjct: 188 GDYRWLIDGDASRIAECPEALVAIMRA---PPPRNTVDHARPAAGAARFVVDLDASTRRY 244

Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHET 240
               + + L         G            A ++  
Sbjct: 245 AMHALDSELQELSSTPKAGGRHGGRNQGAYWAAYNLG 281


>gi|315497369|ref|YP_004086173.1| phage/plasmid primase, p4 family [Asticcacaulis excentricus CB 48]
 gi|315415381|gb|ADU12022.1| phage/plasmid primase, P4 family [Asticcacaulis excentricus CB 48]
          Length = 521

 Score =  296 bits (758), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 106/495 (21%), Positives = 176/495 (35%), Gaps = 32/495 (6%)

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHF---LYTADTKAWYKKD--KNNVYIWSLTLDKITAS 354
           K L A   +D  N         GH        D K     +        ++     IT  
Sbjct: 15  KELAAYDLNDFGNALRLIRIMGGHIDKDTVKPDIKRCRLLNLVGQGWIAFNGKHWDITFG 74

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
                      V     +PE                 R  +    + + +     +A   
Sbjct: 75  D-QLARQSAHMVSQRMRDPEVMTAIMDKHGRAPADIQRYLDSLGQAGSTAAMLK-QAEPY 132

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQK------VKPTKELYITKSTGTPFVEGEPSQE 468
            SI  +  D +      ++G + L   +K              IT+   T +     + +
Sbjct: 133 LSIEIEEFDRAPMAFNVRNGTVWLRQTEKGLKADLRPHDPGDRITRIANTEYDPKAKAPQ 192

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
           F  LV+    + EV  +  R  G A  G    Q F  ++G G  GKST+MN ++   G  
Sbjct: 193 FEQLVATSLRNPEVRAFMQRACGYAFTGEIFEQGFFILQGKGADGKSTIMNALRDMAGGY 252

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMG-SRIVIISETNENDEINAAKIKQMTGGDCM 587
                  + +            P L+RL G +R+V+++E     ++N   IK  TGGD  
Sbjct: 253 GASAKVETFLDTG-QASPNGPQPELVRLAGETRLVLLAEPPRGAKLNEGLIKGWTGGDPY 311

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQ 645
           +AR   G  + E       +++ N    V+  DD  WRR  VI F+  +    RD    +
Sbjct: 312 SARQIQGKNF-EFVPKGRLWMMCNALPVVKGDDDGIWRRMNVIMFEHQVPEDQRDKRLPE 370

Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
           KL          W + GV  ++ +GL    PE      E  R+ +  +  W+D+ C  GE
Sbjct: 371 KL-KAEFPGILNWIIAGVGDWLEQGLKP--PEKVRAVLENYRKTSSPFGDWLDESCVYGE 427

Query: 706 ---NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
              +    +  L  SY  + E+  +   + +S R     L Q+  + G +    +K  K 
Sbjct: 428 AAGDAVTGATVLYNSYKAWAEENGH--DRPMSVRAFGDALMQRQILLGPRLSDGKKTRKP 485

Query: 763 KRIIKGLKLKPAFES 777
                 ++LK   E+
Sbjct: 486 ------IRLKTLAET 494


>gi|169334190|ref|ZP_02861383.1| hypothetical protein ANASTE_00588 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258907|gb|EDS72873.1| hypothetical protein ANASTE_00588 [Anaerofustis stercorihominis DSM
           17244]
          Length = 359

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 147/368 (39%), Gaps = 16/368 (4%)

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
               I+    DS       ++G L ++T + ++      +TK +   +     S  +   
Sbjct: 1   MYHPISVSEFDSDPYIFNCKNGTLRVDTFECLEHKSSDKLTKISNVIYDPNAKSHRWDKF 60

Query: 473 VSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYV 530
           +S   F  +E   +  + +G  L G  + +    + G    +GK TL   +    G+   
Sbjct: 61  ISEIMFGDKEKAKFLQKLLGYGLTGDTRHECMTILYGASTRNGKGTLCESVLKVLGSYGC 120

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
                +   Q     + +    + RL G R V ISE  +   +NAA++K MTG D + AR
Sbjct: 121 TARPETL-AQKNNANSSQPTEDIARLAGVRFVNISEPGKGLVLNAAQVKSMTGNDTINAR 179

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLE 648
             + N++ +    F  +I  N    V +       R I++PF++    + +D S  Q+  
Sbjct: 180 FLHENSF-DFQPLFKLYINTNYLPAVNDMTIFTSGRVIIVPFERHFDESEQDKSLKQEFS 238

Query: 649 TKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
                     W L+G      +GL +  P     A    +  +D    +++DC + G + 
Sbjct: 239 RPEVQSAILNWLLEGYALLRKEGLVL--PHSVKDATARYQHDSDKMVLFMEDCMEQG-DF 295

Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
            E + S+ + Y ++  +  +Y     S +    +L+    +  + R++ +   +   ++ 
Sbjct: 296 EERTSSVYRCYKDWCAENGHYAE---SMKNFKQSLEA---VANVVRKRPKGGGEKTTMVI 349

Query: 768 GLKLKPAF 775
           G +L   F
Sbjct: 350 GYRLLSDF 357


>gi|228969624|ref|ZP_04130417.1| hypothetical protein bthur0004_62880 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790090|gb|EEM37879.1| hypothetical protein bthur0004_62880 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 345

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 148/329 (44%), Gaps = 21/329 (6%)

Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFI 504
             +EL +TK T   F E     E+L+ +   F   +E+ +Y  R +G +L G    Q  +
Sbjct: 4   HDRELGLTKITNISFDENAKCPEWLNFLDQIFQGDKELTEYMQRLIGYSLTGEITEQIMV 63

Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
            + G G +GKST +N IK   G         + I +        AN  + RL+G+R V  
Sbjct: 64  FLIGGGSNGKSTFINTIKDLMGEYGKQAKSDTFIKKKET----GANNDIARLVGARFVSA 119

Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
            E+ E ++++ A +KQ+TGG+ + AR      Y E    F  F   N    ++  D+  W
Sbjct: 120 IESEEGEQLSEAFVKQITGGEPVLARFL-RQEYFEFIPEFKVFFTTNHKPVIKGVDEGIW 178

Query: 625 RRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
           RR  ++PF+  +    RD    +K+          W ++G   +   GL  + P + +KA
Sbjct: 179 RRIRLVPFNLQLPKEKRDKKLPEKISL-EMPGILNWAIEGCLKWQKSGL--NDPAIVMKA 235

Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
             + ++  D    ++ +CC   E++  E+  L + Y+ +  +       ++  R     L
Sbjct: 236 TGDYKEEMDILGPFMFECCFKREDVQIEAKELYEVYANWCFKNGE---HQLKNRAFYRIL 292

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           + +GF       K E+  K+K  IKG+ L
Sbjct: 293 ESQGF-------KRERGSKNKYYIKGVTL 314


>gi|315122922|ref|YP_004063411.1| P4 family phage/plasmid primase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496324|gb|ADR52923.1| P4 family phage/plasmid primase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 333

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 268/329 (81%), Positives = 296/329 (89%), Gaps = 4/329 (1%)

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
           PS EF++LVS YFESEEVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNLIK+A
Sbjct: 5   PSAEFMNLVSNYFESEEVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNLIKFA 64

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
           FGNQYVINAEASD+MQNRPPEAGKANPSLIRLMGSR+VIISETNENDE+NAAKIKQMTGG
Sbjct: 65  FGNQYVINAEASDVMQNRPPEAGKANPSLIRLMGSRVVIISETNENDELNAAKIKQMTGG 124

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644
           DCMTARLNYGNTYSE+ ASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDA+FA
Sbjct: 125 DCMTARLNYGNTYSEARASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDATFA 184

Query: 645 QKLETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
           QKLET+Y LEAKKWFL+G+KAYI  G  LDV +PEVC+ AKEEER+GTDTYQAWIDDCC+
Sbjct: 185 QKLETEYALEAKKWFLEGIKAYIRNGRNLDVYVPEVCINAKEEERRGTDTYQAWIDDCCE 244

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK-EWK 761
           +GE   EES  LA+SYSEYREQELNYDRKRISTRTVTLNLKQKGF      EK      +
Sbjct: 245 VGEGFLEESSILARSYSEYREQELNYDRKRISTRTVTLNLKQKGFKDDRDWEKPRPDRGR 304

Query: 762 SKRIIKGLKLKPAFESVDDN-SNIIDFKR 789
             RII+GLKLKPAFE +++  +N+IDFK+
Sbjct: 305 YLRIIRGLKLKPAFEDIENEPNNVIDFKK 333


>gi|119383734|ref|YP_914790.1| P4 family phage/plasmid primase [Paracoccus denitrificans PD1222]
 gi|119373501|gb|ABL69094.1| phage/plasmid primase, P4 family [Paracoccus denitrificans PD1222]
          Length = 612

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 91/550 (16%), Positives = 180/550 (32%), Gaps = 82/550 (14%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
                         +D  N   ++ + +   +Y           +   ++W+    +   
Sbjct: 50  QADDPFSDCAQYPLNDHGNGQRYARHYRDELIYVP---------RYGWHVWTGQRWQKDE 100

Query: 354 SIMNFLVSM--------------------------------------------KEDVFDL 369
             +                                                   E+    
Sbjct: 101 DGIEVRRRAQMLGELISREIPHLRLEDWQMQILEDGVQLRRRERELGRIVSAGGEEAEAA 160

Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS------TAQSLEAGSIFSITSDLLD 423
            +E +                   +         S       A   EAG   +++ + L+
Sbjct: 161 QQELDSMAPKLARLSGVEKVLLSVRKDHHGWAKTSGNTTRIDASIKEAGVGLAVSFERLN 220

Query: 424 SSSRFLGEQDGILDLE--------------TGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
           ++   +  ++G++                   Q V   ++  ITK     +        F
Sbjct: 221 AAPLDVCCENGVMRFSVIPGDPESGMSPMADMQFVPHARDQLITKMMPVRYDPEAKRPIF 280

Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
              ++      EV  +  R   +        Q+ +   G+G +GKS L++LI   FG+  
Sbjct: 281 DRFITRILPDPEVRRFVQRWFALNTTALTGEQKLVFFYGLGANGKSVLVDLIARMFGDYA 340

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
              A    +  +   +   A P L+ LM +R+V  SE  E +++    IKQ+TGG+ +  
Sbjct: 341 -ATARIETLTGSTKKDGSAATPDLVPLMLARMVRTSEPEEGEKLREGLIKQLTGGEPINV 399

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
           R N+G    E    F   I  N    VR  DD  WRR +++PFD  I    RD     KL
Sbjct: 400 RPNFGEQ-IEVTPKFKITIQGNYRPEVRGRDDGIWRRLLIVPFDVTIPPKERDPDLGAKL 458

Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--E 705
             +       W ++G+  Y+  GL    P   L A  E R+ +D    +++ CCD+    
Sbjct: 459 W-EERSGILNWLIEGLIDYLEGGLQ--EPPAVLSATNEYREESDPLGFFLESCCDVSGQP 515

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
              E    L +++  +++++     +  + +    +  ++       ++  E++      
Sbjct: 516 EDSETVKDLVQAFQFWQDEQGGAVWQPGTVQRQLKDKMRRWVSPSTGKKFAERKSNGIMR 575

Query: 766 IKGLKLKPAF 775
             G++    F
Sbjct: 576 YDGIRFSIEF 585


>gi|255522605|ref|ZP_05389842.1| hypothetical protein LmonocFSL_15586 [Listeria monocytogenes FSL
           J1-175]
          Length = 540

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/571 (16%), Positives = 189/571 (33%), Gaps = 52/571 (9%)

Query: 106 FRMNKEGI-----KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
           + ++  GI              +G++++   G++FV           Y         +V 
Sbjct: 5   YSVSGTGIHIIARGNFPDGGRRKGNIEMYPDGRFFVMTGQVIDN---YR--------QVN 53

Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
           +     +          + +           +P         R     +           
Sbjct: 54  EATSAIQYLHTKYIGTNE-VRQINNLQSTVDLPVSDIIQRAERSKQGAQFKTLYDGL--- 109

Query: 221 FYNGSHDEWIPVVMAVHH-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE 275
            ++G +       +A  +         + K  E+ R      + +D++     +      
Sbjct: 110 -WDGLYPSQSEADLAFANMLAFWTGCNAEKMDEVFRSSGLYRTKWDQKRGAQLYGEMVIN 168

Query: 276 EIGDTAKK----RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK 331
           +      +     S                  A    D  N   F         ++   K
Sbjct: 169 KAITNTSEIYQPGSELEGYSISIKNQNNTARKAYGLDDTGNAERFRDKFHDIVRFSYINK 228

Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
            +Y  D                +I        E + D+  E       S + + +     
Sbjct: 229 GFYFYDSKVW---------KYDNIGAVKTLADEVIKDMKSEFAYMENESDAEKAFMKHLK 279

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
             ++ +  +         EA  +  +  +  D    FL  Q+G ++L+ G+ +   ++  
Sbjct: 280 ATRSNKGKTNMLK-----EAQHLMPVLPEEFDRHKYFLNTQNGYINLQNGELINHDRQKM 334

Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
            TK +   + +   +  + + ++  F   +E+++Y  + VG +L G    Q    + G G
Sbjct: 335 FTKISNIEYTDKIDAPLWQEFLNDIFEGDKELINYIQKAVGYSLSGSTAEQVMFILFGNG 394

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
            +GKS  +++I   FG+        + +++    ++  AN  + RL G+R V  +E NE 
Sbjct: 395 RNGKSVFLDIINDIFGSYATNIQPQTIMVKQ---QSSNANSDIARLHGARFVTTTEPNEG 451

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             ++   +KQ+TGGD +TAR  Y + + E    F  ++  N    +R  DD  WRR  ++
Sbjct: 452 VRLDEGLVKQLTGGDKVTARHLYKDEF-EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLV 510

Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWF 659
           PF   I +   D     KL          W 
Sbjct: 511 PFTVKIPDEKVDKQLKYKL-RSELTGILNWA 540


>gi|317125794|ref|YP_004099906.1| phage/plasmid primase, P4 family [Intrasporangium calvum DSM 43043]
 gi|315589882|gb|ADU49179.1| phage/plasmid primase, P4 family [Intrasporangium calvum DSM 43043]
          Length = 463

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 162/461 (35%), Gaps = 39/461 (8%)

Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
               +       LY               + +                 ++     L+E 
Sbjct: 31  AYRLARRYVDRLLYVH---------GLGWHHFDGKRWAEDDQGHARRAVLEVLRESLAES 81

Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
             D                     E  +          A   F+ T   +D+    L   
Sbjct: 82  VGDKQLRMDV-----------TRCESAAGVSGVLDIAAALVEFAATVRDVDADPWLLNCA 130

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGM 492
           +G LDL T           +TK T   +     S E+   ++     ++   Y  R +G 
Sbjct: 131 NGTLDLRTRALRPHDPSDRLTKVTTGAYDPEADSSEWHAFLASVLPDQDERAYLQRVIGQ 190

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
           ++ G  +   F  + GVG +GK T    I +A G+   I      +++ R    G   P 
Sbjct: 191 SVYGRVREHLFPVLIGVGANGKGTTYGAISHAMGDYASIINPELLMVRERGGVGG---PE 247

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           ++ LMG+R+VI SET +  +++   +K++TGGD +TAR  Y         S     V N 
Sbjct: 248 MMTLMGARLVIGSETEDGRKLDETLMKRLTGGDELTARRLYREP-VSWRPSHQLIYVTNH 306

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
              V+  D A WRR  V+PFD  +    RD    ++L   +      W + G   Y   G
Sbjct: 307 LPKVKGNDPATWRRIRVVPFDVVVPVMQRDPELPERLAL-HADAILTWVIAGHFDYEDNG 365

Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730
             +  P   ++A    +  +D    +I + C+ G+ +   +  L  ++  +   E   + 
Sbjct: 366 -GMREPASVVRATGAFQADSDAVARFIAEECETGDYVHVRTRDLYGAWRRWAVSEGADE- 423

Query: 731 KRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
             +S R     L + G+          +  ++  +  GL L
Sbjct: 424 --MSERAFAKELDRLGYEA--------RRTRNGAVRAGLTL 454


>gi|85709926|ref|ZP_01040991.1| primase, putative [Erythrobacter sp. NAP1]
 gi|85688636|gb|EAQ28640.1| primase, putative [Erythrobacter sp. NAP1]
          Length = 774

 Score =  291 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 129/800 (16%), Positives = 243/800 (30%), Gaps = 97/800 (12%)

Query: 15  HNGFKLIPLRLGDKRPQRL--------------GKWEEQLLSS-EKIDKLP--ACGFGFV 57
             G++LIPL   DKR                    W  +   + + I +L       G  
Sbjct: 16  EAGYQLIPLHRWDKRRMDDRTGKVRELGKAPIDKNWTTRAHDNCDAIARLQRGGGNVGVR 75

Query: 58  CGVGEQPLYAFDIDSKDEKTANTFKDTFE-------ILHGTPIVRIGQKPKILIPFRMNK 110
                      D D +++    +  D  E          G P VR G         ++  
Sbjct: 76  L---RDTDLVIDWDPRNDSGQWSMGDYVEFILRNGLDPTGWPTVRTGSGGLHHYLTKLAD 132

Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP-HRFKVEDTPLLSEED 169
             I ++         ++    G+  VA      T + Y W   P   F   D P      
Sbjct: 133 LRIVERP---EGYPSIEFKTVGRQVVAPGSIHPTGELYRWEGEPVGMFGAPDAP------ 183

Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229
            + L +  +  + P     +  +            Y+  E+ + L     E +   H +W
Sbjct: 184 -DRLLESARRHSKPSTVPSRCGV------------YSPEELASMLDALDPEDFEE-HADW 229

Query: 230 IPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE--ENFNYKWDTFDFEEIGDTAKKRSTF 287
           + ++MA HH T G   G+E    WS     Y +  E    +WD+   +  G     R+  
Sbjct: 230 LEIMMACHHATAGD--GREEFIEWSTSDPAYADHAEEIASRWDSLSIDRSGG-ITYRTLH 286

Query: 288 TSLFYHH-GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
            +L     G +IP+   A  F D                  +  + W  K        + 
Sbjct: 287 KALIEAGRGDVIPRPDPADDFDDELPATAS----------VSSERRWPTKVVYEEKHGAK 336

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK-SPRFWFNTDYRRQNVEENSKA--- 402
                 A     L+     V+DL +        +               +VE  +K    
Sbjct: 337 NARHFLARRPGRLICSDGKVYDLRDGIWQTRSEAMLRAEIRKTDPTDNLDVEHVNKMVRG 396

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLG-EQDGILDLETGQKVKPTKELYITKSTGTPFV 461
            S  ++ EA     +    +D+    +   ++G+LD+ +          + T      F 
Sbjct: 397 ISDLRATEARPFDWLEESPIDAGPGDIALFRNGLLDVRSRTLHPLDGSYFATGLPEHGFD 456

Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
                  ++  +                +G  +    +A + +++ GV   GKST   + 
Sbjct: 457 ADASCPSWMRWLDESLA-PSFHPTLQEWMGYLMTADTRAHKIMNLIGVKRGGKSTAAQVC 515

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET----NENDEINAAK 577
           K   G Q+V ++    I  +           L   +  R++++ +     +    I   +
Sbjct: 516 KDLVGRQHVHSSTLEGIAGDFG---------LEPCVDKRLLVVPDAHDVNSAKRAIALER 566

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           IK  TGGD +        +  ++       +V NK     +   A   R I+I F+    
Sbjct: 567 IKMFTGGDEVDVNRKNI-SVIQATLPTRLMVVANKLPKFIDESGALAARAIIIKFETSFQ 625

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV--CLKAKEEERQGTDTYQA 695
            R+                 W L+G+    S GL   I E      A  E          
Sbjct: 626 GREDHELAAKLRAEMSGIANWALEGLDRLRSNGLAFTIGEAGRLEAATSEL--SQSPALR 683

Query: 696 WIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIG 749
           +  +   I   +        + ++Y ++   E     +  +   +       L +  +  
Sbjct: 684 FARERLSITCDQRDAVPMREVYRAYQDWALTEGLSRGETRNQTDLASDLNAALPELKYKQ 743

Query: 750 GIKREKIEKEWKSKRIIKGL 769
              + +  +  K    + G+
Sbjct: 744 RRMKSRAGRRAKQTYCLTGV 763


>gi|206599794|ref|YP_002241983.1| gp90 [Mycobacterium phage Gumball]
 gi|206283008|gb|ACI06462.1| gp88 [Mycobacterium phage Gumball]
          Length = 977

 Score =  291 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 143/987 (14%), Positives = 265/987 (26%), Gaps = 227/987 (22%)

Query: 6   WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56
           ++   +     G+   +PL    K+  P           S + I                
Sbjct: 13  FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72

Query: 57  VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100
             G  E          L   D+D  +     ++           L   P       +   
Sbjct: 73  HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYTSSSRTGV 132

Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147
             +  F +  +             H+DI+    +Y + +   HP               +
Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188

Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172
           Y W  P             V D PLL +  VE                           +
Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
                           K     K W        +  +                H  W   
Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308

Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263
           + A         + +  +            SK                      + Y+  
Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368

Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
               + D F                E    + + R  +           P+       SD
Sbjct: 369 --ADELDAFTASLNSAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424

Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
             N   +    K +  Y      W      +  +     ++    +        E +   
Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484

Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
           + E +     + +        +R                  A     I    L+++   +
Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPALI 544

Query: 430 GEQDGILDL--------------------------------------------------- 438
             ++G+L+L                                                   
Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGRNGTANVASLAEDDEEFDLDYEAVA 604

Query: 439 --ETGQKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSGYFESEEVM 483
                +  +  +E  +T STGT ++  +              +  +   V  Y   EEV 
Sbjct: 605 PNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYLPDEEVR 664

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +  + +G +LLG N+ +  + + G  GSGKST +N    A G    +  +      +R 
Sbjct: 665 LFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGEYADV-VDLGIFKGDR- 722

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
               + NP+L   +  RIV  SE ++ + ++A   K++TGGD +TA L Y N   +   +
Sbjct: 723 ----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNESVKRKPA 778

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAKKWFLKG 662
           F P+I  N    +   D A   R +V+ F++ I  +D      L +         W ++G
Sbjct: 779 FVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVLAWAVEG 838

Query: 663 VKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC-------------------CD 702
              Y  +GL   D P        E          ++ +C                   CD
Sbjct: 839 WGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFLSECVEEAPMSLRRKAERRAWRVCD 898

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
             E        +   Y  + ++    DR  +     +  LK  G+    + E ++K+  +
Sbjct: 899 WPEEWHITVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAEVVKKDGFT 954

Query: 763 KRIIKGLKLKPAFESVDDNSNIIDFKR 789
            R   G KL         N+ ++  ++
Sbjct: 955 SRTYAGFKLNS------PNARVLKLQK 975


>gi|170751547|ref|YP_001757807.1| P4 family phage/plasmid primase [Methylobacterium radiotolerans JCM
           2831]
 gi|170658069|gb|ACB27124.1| phage/plasmid primase, P4 family [Methylobacterium radiotolerans
           JCM 2831]
          Length = 472

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 91/468 (19%), Positives = 177/468 (37%), Gaps = 35/468 (7%)

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
            ++ +    F+  + G  L+  DT  W        + W+    +     + F     +  
Sbjct: 31  LTEDWAARTFAERRVGDLLFCHDTGKW--------HTWTGAAWRPNRCGLAF-----QWA 77

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
            +L+ E  +N +                   + + A    +   +  +F++T +  D+  
Sbjct: 78  RELAREMCENEEPKTRF-----------IASKTAFAAGVERFSRSDPVFAVTIEGWDADP 126

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485
             LG   G +DL TG+  +  +   ITK T     E      +L  +          + +
Sbjct: 127 WLLGTPGGTVDLRTGKLREADRADRITKLTAVAPAETPECPTWLKFLDDVTQGDAGYIRF 186

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
             +  G  L G    Q      G GG+GK  L++++     +  V  A  +         
Sbjct: 187 LQQWAGYCLTGDTSEQALCFAYGGGGNGKGVLIHVLAGILADYAVNAAMETFTAAK---- 242

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
             +    +  L G+R+V  SET +  +   A+IKQ+TGGD M AR    + + E      
Sbjct: 243 HDRHPTEIAALRGARLVTASETEQGRQWAEARIKQLTGGDTMRARYMRQDEF-EFTPVLK 301

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
             I+ N    + + DDA  RR+ ++PF    A  D    +KL  K   +  +W ++G   
Sbjct: 302 LLIIGNNKPGLSSVDDAARRRFNLLPFLFKPAVPDPQLEEKL-RKEWPQILRWMIEGCLD 360

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
           + +    +  PEV   A +E  +  DT+  W+D  C + +       +  + ++ + +  
Sbjct: 361 WQAH--RLVRPEVVKDATDEYFEQQDTFGQWLDARCIVDKGNPYRKATTQELFASWADFA 418

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
              +    +  +    L + GF     +          R  +G++++P
Sbjct: 419 RGSNELVGTMHSFGDRLDKLGFKKN--KNVPTGVNGRARGYEGIEVRP 464


>gi|18496953|ref|NP_569803.1| hypothetical protein TM4_gp70 [Mycobacterium phage TM4]
 gi|4336104|gb|AAD17635.1| gp70 [Mycobacterium phage TM4]
          Length = 867

 Score =  289 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 82/474 (17%), Positives = 170/474 (35%), Gaps = 35/474 (7%)

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332
               +     +++   +      ++I +       +D  N  +          +  +   
Sbjct: 375 RPVTLAPMQPEQTAGNTATVQLSEIIRESTANVTPTDTGNADLLVRACSDRLRWCPE--- 431

Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
                     +W  T  + +      +++  E V  +  E  D        R        
Sbjct: 432 -----SGKWLVWKGTRWQPSPDGGEAIMAAIEVVQSIKVEDGDKAGGQHKMRSLQRRS-- 484

Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
                      +     +      ++   LD+    L    G+++L+TG+      E + 
Sbjct: 485 ---------LDNMVALAKCRPGMRVSLADLDADPYALNTPSGVVNLKTGELTPHRPEGWH 535

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
           T+ TG  +     +  +   +   F   + +++Y  R  G A +G         + G G 
Sbjct: 536 TRVTGAGYERDGAAPRWWAFLHRTFGGDKSMVEYVQRLAGYAAIGEVTHHVLPFLFGAGS 595

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           +GKS LM+++    G+  +       +         +    + RL G+R+V+ SE N + 
Sbjct: 596 NGKSVLMDVLSAVLGDYAITAPGNFLLAGR-----ERHETEIARLHGARLVVCSEVNADS 650

Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
           + + AK+K +TGGD ++ R      + +   S T F++ N    V+    +++RR+ +IP
Sbjct: 651 KFDEAKVKLLTGGDVLSGRFM-RQDFFDFVPSHTLFLMGNHQPDVKAGGTSFFRRFRLIP 709

Query: 632 FDKPIANRDA--SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
           F+  +  R+     A +L  +       W   G +  +  G+    P   L A  + +  
Sbjct: 710 FEHIVPERERVEGLAHQLVAEEGDAILAWIADGARQVLDGGMR--EPASVLAATAQYQDD 767

Query: 690 TDT-YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
           T T    ++D+CC IGE    E  ++ + Y  +           + T      L
Sbjct: 768 TRTGVARFLDECCTIGEG-EAEVGAVHQCYIAWAIAHGE---PLVDTAKFGREL 817


>gi|212702855|ref|ZP_03310983.1| hypothetical protein DESPIG_00887 [Desulfovibrio piger ATCC 29098]
 gi|212673717|gb|EEB34200.1| hypothetical protein DESPIG_00887 [Desulfovibrio piger ATCC 29098]
          Length = 542

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/506 (16%), Positives = 174/506 (34%), Gaps = 42/506 (8%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           ++  +  +FS   KG   Y      W     ++  +  +       + +  +        
Sbjct: 49  NELGDGLLFSYLFKGRHAYVGQADEWIWWSGHHWSVDLIEKGHRARADVEHVAQAYYTTG 108

Query: 368 D----LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE-----AGSIFSIT 418
                L+++ E +     + R     +  +             + LE       S  +I 
Sbjct: 109 AHFDRLAKDAERDGDKESAGRLKAKAEKMKARAARLRTETGRKRCLEFAKTNLESPLAIA 168

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYF 477
            D +D     L   +G++DL TG+      + ++ KS+   +     P   +   V+   
Sbjct: 169 GDEIDRDPWSLPMANGVVDLRTGEIRPGRPDDWLVKSSPVEWQGIDAPCPHWEHFVTEIM 228

Query: 478 ES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA--- 533
               E+  +  R  G  + G  +   F+ + G G +GK  +  +I+   G Q    A   
Sbjct: 229 GDDPEMAAFLQRVFGYGVTGLAREHIFLVLLGRGRNGKGIMTEVIQTVLGGQNATTALAG 288

Query: 534 ---EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
                  + Q +   A   +P ++ L G RI   SET+E    + A++K  +GG+ +T R
Sbjct: 289 PVQSEMLLDQGKNRSAAGPSPDIMSLRGLRIAFASETDEGQRFSPARVKWFSGGETLTGR 348

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA------ 644
             +         +    ++ N        D A+W R +++ F     +R           
Sbjct: 349 YPHDKRNVSFAPTHLLALLTNHKPHAPASDFAFWERLLLVDFPLSFVDRKPQNENERPMD 408

Query: 645 ---QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
              +    +       W ++G   +   G+    P    +A  E R+  D    ++D+CC
Sbjct: 409 KGLKDRLLQELPGIAAWLVRGCLEWQRVGIAP--PAKVREATSEYRRDEDLLADFVDECC 466

Query: 702 DI----GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
           D+       +  ++  L  ++  + ++ +   +K IS +     + ++            
Sbjct: 467 DLQQEGQPEIRSKASDLYDAFCAWFKRNV-SAKKTISQKAFGKMMLER---------FQR 516

Query: 758 KEWKSKRIIKGLKLKPAFESVDDNSN 783
           +         G+ + P  +   D   
Sbjct: 517 ERKGGTYYYFGVSVSPHAQLELDQEE 542


>gi|218529937|ref|YP_002420753.1| hypothetical protein Mchl_1974 [Methylobacterium chloromethanicum
           CM4]
 gi|218522240|gb|ACK82825.1| phage/plasmid primase, P4 family [Methylobacterium chloromethanicum
           CM4]
          Length = 485

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 101/523 (19%), Positives = 187/523 (35%), Gaps = 45/523 (8%)

Query: 266 NYKWDTFDFE--EIGDTAKKRSTFTSLFY-HHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322
              + +FD E  ++G  ++ R +          + +         +       F+    G
Sbjct: 1   MRDFPSFDAELDDLGPESENRWSRDGNDEPEPKRKLKLDHNGEPLNQDSAAQAFAQRYAG 60

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             LY  D+  WY+        W+    K     + F    +E + +L  E  D  +   S
Sbjct: 61  RLLYCHDSAKWYE--------WTGVAWKPNRCGIAF-HWSRELIRELFAEKSDRTRYIAS 111

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
              +     +    +                  ++T +  D+    LG   G +DL TG+
Sbjct: 112 KVEFAGGIEKYCRHD---------------PALAVTIEGWDADPWLLGTPGGTVDLRTGE 156

Query: 443 KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQ 501
             K  +E  +TK T     E      +L  +          + +  +  G  L G    Q
Sbjct: 157 LRKAHREERVTKLTAVAPAEASGCPTWLRFLDDVTQGDAGYIRFLQQWAGYCLTGDTSEQ 216

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
                 G GG+GK  L++++     +  V  A  +           +    +  L G+R+
Sbjct: 217 VLCFAFGGGGNGKGVLIHVLAGILKDYAVNAAMETFTASK----HDRHPTEIAALRGARL 272

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
           V  SET +  +   A+IKQ+TGGD M AR    + + E        I+ N    + N DD
Sbjct: 273 VTASETEQGRQWAEARIKQLTGGDTMRARYMRQDEF-EFTPVLKLLIIGNNKPGLSNVDD 331

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
           A  RR+ ++PF    A  D    +KL         +W ++G   + +    +  P+V   
Sbjct: 332 AARRRFNLLPFLFKPAVPDPRLEEKL-RAEWPAILRWMIEGCLDWQAN--RLVRPDVVKV 388

Query: 682 AKEEERQGTDTYQAWIDDCCDIG---ENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
             +E     DT+  W+++ C +          +  L  S++E+            +  + 
Sbjct: 389 VTDEYFSAQDTFSLWLEERCVVDRANPYRKATTQDLFASWTEFARLNNE---PPGTLTSF 445

Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
              +++ GF        +       R  +G++++P F S D  
Sbjct: 446 GERMEKLGFKKNKHVPTV--VGSRARGFEGIEVRP-FPSRDAG 485


>gi|291563668|emb|CBL42484.1| phage/plasmid primase, P4 family, C-terminal domain
           [butyrate-producing bacterium SS3/4]
          Length = 496

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 175/500 (35%), Gaps = 36/500 (7%)

Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344
           S    +  +H +   +      +S+     +F +       Y  + K+WY   +      
Sbjct: 20  SKMYLIKQYHPEKADETSSGFEWSEMGMANLFGLLYSHEARYCPEHKSWYTYHEG----- 74

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
                +     +     +K+ V  +     +   +     +    +        +   K 
Sbjct: 75  ---AWRKDEGAILVSEKIKDFVRLMILYCGEIEDDDTRKSYTGFVNKMGDRRMRDRILKD 131

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV--E 462
            A          I++   D+    +   +G  DL      + + + ++T  T       +
Sbjct: 132 AAGE------LRISAVRFDADPYLINCLNGTYDLRDFSFREHSWDDFLTMQTAFSHTISK 185

Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG-GSGKSTLMNL 520
               + +   +       E+  D+  R +G ++LG +  +    + G    +GKSTL+N 
Sbjct: 186 TVKCKRWEKFIKEVTQNDEDKADFLQRALGYSMLGMSNEECMFILHGKTTRNGKSTLLNT 245

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           I+   G+   +         +R  +A  A+P+L  L G R V +SE+NE  +++  KIKQ
Sbjct: 246 IETMLGDYAKVAPVGMICRGDRQKDAEAASPTLAGLKGKRFVTMSESNEYGKLDEEKIKQ 305

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--AN 638
           +TGG+ ++AR  Y  +       FT ++  N    V +       R  V+ F++      
Sbjct: 306 LTGGEEISARALY-QSAITFKPQFTLWLSCNDLPMVTDKSLFASERIKVVEFNRHFSPEE 364

Query: 639 RDASFAQKL-ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
           +D     +L E         W ++G   Y  +GL   +         +  +  D    ++
Sbjct: 365 QDTHLKDELCEQSSMSGIFMWLVRGYIHYKERGL--AMSGSLKSVVTKYERDNDLVLQFL 422

Query: 698 DDCCDIGENLWEES----HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
           ++ C+        +      L  ++  + + E  Y    +S R     +++       K 
Sbjct: 423 ENRCERVPEESSPTVIKAKDLYNAFKIWAKSEGAYI---LSARKFNSEMERHPEWFDRKS 479

Query: 754 EKIEKEWKSKRIIKGLKLKP 773
                         GLKLK 
Sbjct: 480 TSSGYAT-----YCGLKLKE 494


>gi|319647188|ref|ZP_08001410.1| hypothetical protein HMPREF1012_02449 [Bacillus sp. BT1B_CT2]
 gi|317390535|gb|EFV71340.1| hypothetical protein HMPREF1012_02449 [Bacillus sp. BT1B_CT2]
          Length = 642

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/649 (16%), Positives = 214/649 (32%), Gaps = 73/649 (11%)

Query: 5   QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           QW     +        +P  +     +      W       +  +     G GF+    +
Sbjct: 31  QWILWRSEERDGKKTKVPYQIDGSMAQSSNKRTWSTFPTVLKFYNDRDYDGIGFMF-SKD 89

Query: 63  QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
            P    DID   +D   +   ++  + +          K  + I  +            +
Sbjct: 90  DPFIGIDIDHCVEDGVLSPFAEEIVQAISSYTEYSPSGKG-VHIITKGKIPLRGPGTGRK 148

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           + +  L++   G+YF                   +   +      ++E  E   K+ ++ 
Sbjct: 149 NPELGLEVYRHGRYFTFTG---------------NSLGIGAVEERTDELKELFEKYLKDK 193

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238
                        S+  +N +N++   R   +      ++ +NG    D+     MA+ +
Sbjct: 194 KEESKPSNPPAASSRDMSNLSNKEIWERMFNSKNGKSIQDLFNGHLINDDHSATDMALCN 253

Query: 239 ---------------ETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
                            R S   +E   R  S  G+TY E        +          +
Sbjct: 254 HLAFWTDKDPAKMDSMFRESGLYREKWDRQHSSDGATYGEMTIAAAIYSTHTTISDLLEE 313

Query: 283 KRSTFTSLFYHH--------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334
           ++     ++  H         K I         ++  N      Y   +  Y        
Sbjct: 314 QQEQPYEVYISHPNNSQVEDTKEIIDTPPVFHLTELGNAERVVYYHGKNIRYC------- 366

Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
             ++ +  IW+    +   S         + +  L  E +      +  +     D+ ++
Sbjct: 367 --NELDWLIWNGKRWEE-DSKRKIEAITAKTLRALYGEAKATEDKFRKKQL---NDWAKK 420

Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
               N +  +    L+   + S+    LDS        +G++DL+TG+ +   ++L  TK
Sbjct: 421 CERRNIRMNTI---LDVRPMVSVRKQELDSHKYLFNCDNGVIDLKTGELLPHDRDLLFTK 477

Query: 455 STGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRG 508
            +   +        +   +   F  +      E++D+  + +G +L G    Q    + G
Sbjct: 478 ISPISYQPDADCPNWKTFLESIFIDDQGTPNYEIIDFMQKAIGYSLTGDTTEQVMFFLFG 537

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            G +GKST +N +++ FG+        + I +         N  + RL G+R V   E+ 
Sbjct: 538 NGRNGKSTFINTVQHLFGDYGRQTNSDTFIKKK---NDSAINNDIARLDGARFVSAVESE 594

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
           E  +++ + +KQ+TGG+ M+AR      Y E    F  F   N    V+
Sbjct: 595 EGQQLSESLVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVK 642


>gi|159039260|ref|YP_001538513.1| P4 family phage/plasmid primase [Salinispora arenicola CNS-205]
 gi|159039311|ref|YP_001538564.1| P4 family phage/plasmid primase [Salinispora arenicola CNS-205]
 gi|157918095|gb|ABV99522.1| phage/plasmid primase, P4 family [Salinispora arenicola CNS-205]
 gi|157918146|gb|ABV99573.1| phage/plasmid primase, P4 family [Salinispora arenicola CNS-205]
          Length = 874

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/491 (18%), Positives = 173/491 (35%), Gaps = 45/491 (9%)

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
                  ++A               Y      W   D +                   L+
Sbjct: 419 NPEQFGPTEAGMARALVANHGEVLRYCPQRARWLMWDGHRWT------WDDAEQHRELLL 472

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           ++ + + +               + W     R  +    +     AQ            D
Sbjct: 473 ALADRIPN--------------DKEWATFRKRAMSAAGVTGIARLAQH---NPHVVAHFD 515

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES- 479
            LD+++  L    GI+DL TG           T+ST  P         + + ++  F   
Sbjct: 516 DLDANAWELNTPAGIVDLRTGTVRAAEPAALHTRSTAVPVDLTADPGRWNEFLADTFGDN 575

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
           +E++ Y  R VG +++G           G GG+GK   +  +    G+          + 
Sbjct: 576 DELITYLRRLVGYSVVGHVGPHVLPFCHGSGGNGKGVFLEALAGVLGDYATTAPVGFLMA 635

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           Q            + RL GSR+VI SE NE+D  + AK+K +TGGD +TAR    + +  
Sbjct: 636 Q----SHPGHETEIARLAGSRMVICSEVNEDDRFDEAKVKMLTGGDSLTARFMRQDHF-T 690

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKK 657
              +   +++ N    VR+   ++WRR  +IPF+  +            L   +      
Sbjct: 691 FTPTHQLWLMGNHQPAVRSGGRSFWRRLRLIPFNHEVPEEKIVDDLQGILVRDHGPALLA 750

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSLA 715
           W   G   Y + GL    P+    A  E     D+   ++ +CC +  GE++  ++  + 
Sbjct: 751 WITAGTTQYHASGLQ--EPDSVKAATAEYAHDQDSVAKFVQECCHLGGGEHVTIKTAKVR 808

Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
           ++Y ++   E       +S + +   L+++        + +     + R+   L L    
Sbjct: 809 EAYEQFCYAEGET---PVSAKALGTALEKR-------FKVLRLRTPAARLYGNLSLLIDE 858

Query: 776 ESVDDNSNIID 786
           ++  D S+  D
Sbjct: 859 DASSDASSTRD 869


>gi|301058441|ref|ZP_07199462.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
           proteobacterium NaphS2]
 gi|300447497|gb|EFK11241.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
           proteobacterium NaphS2]
          Length = 512

 Score =  287 bits (734), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 181/481 (37%), Gaps = 33/481 (6%)

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
           +     +F+   +G F++  D+  W+    ++  I  +         +      +     
Sbjct: 44  EVGAGIIFARLHEGKFIFNKDSLEWWVWAGHHWVIDKMNNALKDVEKVALWYIGQAIALS 103

Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA------GSIFSITSDLL 422
              E   +  N  +             +    + ++  Q               ++S+  
Sbjct: 104 KQIEKAGSQNNKATIEKLQRDQRLCNKMVARLRTETGRQICLKTAHSNHVLSLEVSSEQF 163

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYF-ESE 480
           D        ++G++DL+TG+        YITK++   +     P+ E+  ++        
Sbjct: 164 DQDPWLFACKNGVIDLQTGEIRPGRPHDYITKASPVGWEGIEAPAPEWERVLLEIHNGDI 223

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           E++ Y  R  G A++G           G G +GK+T    I    G+          + Q
Sbjct: 224 EIVRYMQRLYGSAIVGKTSEAVVPVQCGGGRNGKTTENETIAAVVGDMAGPIPSQMLLDQ 283

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
            R   +   +P L+ L G RI   SE  E    +AA++K ++G D +TAR  +    ++ 
Sbjct: 284 GRYQNSAAPSPDLMDLKGLRIAFASEIEEGRRFSAARVKWLSGSDTITARAPHDRRSTKF 343

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----------DASFAQKLETK 650
             + T F++ N        D A+W R  +IP++    +R          D    +KL T 
Sbjct: 344 RPTHTLFLMTNSKPGAPANDFAFWSRVNLIPYEISFVDRQPKTPNERRIDKHIPEKL-TS 402

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
                  W ++G   +   GL    PE  L A E+ R+  D  Q +ID+ C +  +  E 
Sbjct: 403 EYPGILTWLVRGCLQWQKMGLCP--PEKVLAATEQYRRDEDFLQDFIDEYCFVDPSETES 460

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
           +  L  ++  Y     N  +K  S ++    +       G + +++++        +GL+
Sbjct: 461 AADLYDAFKGY--WTSNVSKKPPSRKSFGQMI-------GSQFKRVKRSTIR---YEGLR 508

Query: 771 L 771
           L
Sbjct: 509 L 509


>gi|303245321|ref|ZP_07331605.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
 gi|302493170|gb|EFL53032.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
          Length = 545

 Score =  287 bits (733), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 89/499 (17%), Positives = 182/499 (36%), Gaps = 48/499 (9%)

Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK-----ITASIMNFLVSMKED 365
            +  +++   KG  L   + K+         + W+    K        +++  +V+  E 
Sbjct: 52  GDGILYAAVHKGTLLCAPELKSQ-------WFEWTGAYWKQVTVYRAEALVEAVVAQYEQ 104

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN--------SKAKSTAQSLEAGSIFSI 417
               +E      K ++            + + +N          + +   +L       +
Sbjct: 105 TRLETELKISEVKQARDDEAEKRLQRLSKRLRKNVDDLREGSGVSAALRFALSNDDPLLV 164

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGY 476
             +  D+    LG  +G++DL TG+  K      + ++ G  +     P   +   V   
Sbjct: 165 RMEEFDADPYLLGVANGVVDLHTGEFRKARPGDRVRRTCGVEWQGIDAPVPLWPSFVQEI 224

Query: 477 FES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
                EV  +  R  G A+ G +    F+ + G G +GK+ ++  +    G+        
Sbjct: 225 VGDDPEVAAFLQRVFGYAITGLSCEPLFVVLAGDGRNGKTVMVETLGKVLGDYMAPIPAE 284

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             + Q +  +A K  P+++ L G RI   +E++EN   + A++K ++G D +T R  +  
Sbjct: 285 LLLDQGQARDADKPTPTIMSLNGLRIAYATESDENRRFSIARVKWLSGDDRLTGRYMWDR 344

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---------RDASFAQK 646
             S    + T F++ N        + A+W R  ++ F     +         RD +  ++
Sbjct: 345 DPSSFYPTHTLFLLTNHKPHAGAHEYAFWDRLRLVNFPYRYVDKPTREHERQRDRTIPER 404

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC-CDIGE 705
           LE K       W ++G   +   G+    P   L A EE ++  D  Q ++D+C      
Sbjct: 405 LE-KELPGILAWLVRGCLLWQRDGIAP--PASVLAATEEYQREEDHVQDFVDECLLTTDP 461

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR- 764
                + ++   Y+ +  +     +   S       L +K          I K+ K    
Sbjct: 462 TDRVSATAIYDLYTRWYFKNR--GKYVPSMNAFGKQLGRK----------IHKDRKGGTV 509

Query: 765 IIKGLKLKPAFESVDDNSN 783
              G++L P  E    +  
Sbjct: 510 YYYGVQLNPVAEDAYPDKR 528


>gi|227830424|ref|YP_002832204.1| P4 family phage/plasmid primase [Sulfolobus islandicus L.S.2.15]
 gi|227456872|gb|ACP35559.1| phage/plasmid primase, P4 family [Sulfolobus islandicus L.S.2.15]
          Length = 885

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 119/864 (13%), Positives = 249/864 (28%), Gaps = 143/864 (16%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACG 53
           M  +QW   AK  I +GF + P+    K+P  +   K+    L+ E+  +          
Sbjct: 1   MDKLQW---AKWFIDHGFAIFPIDAETKKPVIKEWQKYSTTPLTDEEKKQYLEMIEKGYN 57

Query: 54  FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
           +    G   Q L   D + K+   A   +D    L  + +  +      L  +    E  
Sbjct: 58  YAVPGGQ--QNLVILDFEDKELLKAWISEDELNKLCKSTLC-VDTPHGGLHVYVTADEIP 114

Query: 114 KKKKTT---ESTQGHLDILGCGQYFVAYNI---H--------PKTKKEYTWTTPPHRFKV 159
             K      +  +G  D+     Y VA      H        P   ++Y     P+    
Sbjct: 115 DHKFNPMFEKDGKGVADLQSFNSYVVAPGSCINHKFCTSDKCPWKGQDYVTCYIPNNNI- 173

Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
                +++ED++ L KF  +    +  +  S   +  +      + T  +I        +
Sbjct: 174 ----NINKEDLKELLKFLADKGKKIGIELSSSARAWLYEKEKEEESTPEDIKKLQEEMAK 229

Query: 220 -EFYNGSHDEWIPVVMA--VHHETRGSSKGKEIARR---WSKQGSTYDEENFNY---KWD 270
            + Y G   + I   +   +      S K K+I +       +   Y +   +     W 
Sbjct: 230 YDRYKGKTIDAIRSDVCKKLKENVEPSKKTKQIFKTVYGVVCEKKNYSDLGLDRSRGDWH 289

Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK---------- 320
                 +        T               + A ++   +   +   +K          
Sbjct: 290 VITIL-LSLGVTNVETLKRFL-----PNDSKVFAPKWGKYFAHTLKKAWKFAKHALEFQV 343

Query: 321 ------------------KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
                                 L     K + +   +N  I  +        +       
Sbjct: 344 QINGKKETEAKKIAKTIITDAILERFKIKTFRQVTGHNQAIIGVFTWDKKKGVYVPF--- 400

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            +++        +  +     +       +R   +   + K    +              
Sbjct: 401 DKEIRKAIRRTAELLEIRSRDKKTLARLSKRDVDDIFDEIKDLTLTPLPKEPLR------ 454

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDL--------- 472
                 +   +G L+      +    +    K     ++  E   +E             
Sbjct: 455 ------IAFTNGTLEWTDTGLMWHDAKERSPKIYAFYYLPWEVKIEEIEKFQGKEITVQD 508

Query: 473 ---------------VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
                             + + + V       +G  L    K ++   + G G +GKST 
Sbjct: 509 IEQLARGLCPKSLEAFKSWVDDKWV--TLFEIIGYTLYPEIKFRKAFMLVGEGKNGKSTF 566

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
           +NL+K   G   +  +              +    +  L       ++E+ +    +  +
Sbjct: 567 INLVKKILGEYAISISPRELFD-------SQNRFIVSNLYHKLANAVAESKDYSIDDMDR 619

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPI 636
            K++TGGD  TA + + +            +  N   ++R+  D A+W R+I+I F    
Sbjct: 620 FKRLTGGDWFTADVKFKDP-ITFKNIAKLIVASNNMPYIRDTNDKAFWHRWIIIEFPHQF 678

Query: 637 ANRDASFAQKLETKYTLEAKK-WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
            + D  F +               L   +    K  D +  E   +  +     TD+  A
Sbjct: 679 PDDDTWFDKTFTEDEINGIVTVSLLAFARTVQRKHFDFEQTE--REVMDIWLSRTDSVYA 736

Query: 696 WIDDCCDIG--------ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +I +    G         +LW +   L + Y +Y   +     K +  +     +++   
Sbjct: 737 FISEYTKRGIITLDPKNADLWVKRVELYRLYKDYCIDQG---FKGVGGKAFARRVRE--- 790

Query: 748 IGGIKREKIEKEWKSKRIIKGLKL 771
             GI       + K  R   G+ +
Sbjct: 791 YFGIMTVLKNVDGKRVRAFVGITI 814


>gi|217978348|ref|YP_002362495.1| P4 family phage/plasmid primase [Methylocella silvestris BL2]
 gi|217503724|gb|ACK51133.1| phage/plasmid primase, P4 family [Methylocella silvestris BL2]
          Length = 554

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/474 (16%), Positives = 152/474 (32%), Gaps = 37/474 (7%)

Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
              I   L     +D  N   F+   K +  Y  D              W         +
Sbjct: 53  ADSINLHLAHFPLTDLGNAERFAARHKDNLRYCPDIG---------WLHWDGRRWAREGA 103

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY------RRQNVEENSKAKSTAQS 408
                 +    V  + +E     ++     F            +       S+A +   S
Sbjct: 104 EEVVKRAEHVTVRAIQDEAVALRESGHDAVFIDAKGKETLLSDKIAVWGRTSEAANRMAS 163

Query: 409 L--EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ------KVKPTKELYITKSTGTPF 460
           +   A S+ SI    LD+    +   +G L +            +     YITK +   +
Sbjct: 164 ISKRADSMLSIQVGDLDADKMKISVANGTLHIAKRDDGPYVVLKRHDPADYITKISPVGY 223

Query: 461 VEGEPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
                   +   +      +     +V  +  +  G++L G    Q+     G G +GKS
Sbjct: 224 DAEAVCPRYDRFLDEVQPPDAAGGRDVQIFLNQWAGLSLTGDTSEQKITFHYGKGRNGKS 283

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
             +  I +  G+        S +   R    G+A P L  L G R++  SE  +   ++ 
Sbjct: 284 VWVKTISFVAGDYADSIPIESFLDSGRARAGGQATPDLAGLPGVRMLTTSEPKKGATLDE 343

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
             IK  +GGD + AR      +          +  N    +   D+  W R +++P+   
Sbjct: 344 GLIKLFSGGDVIKARHLNK-GFFAFTPQAKLTMQGNYRPRITGADEGIWNRLVLVPWGVY 402

Query: 636 IA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
                RD    +KL            L G+ A++  GL   IP     A  + R  +D  
Sbjct: 403 FPADKRDPRLEEKL-RGEASGVLNRLLDGLCAWLDGGLR--IPSSVAAATADYRSDSDPL 459

Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
             +++ C         ++  +   ++ + +          S + +   +K++G 
Sbjct: 460 GRFLEACTRQAIGKRVQATDMHALFAAWAKSNGEA---VWSAKGLGAAMKERGL 510


>gi|157310960|ref|YP_001468956.1| putative DNA primase [Corynebacterium phage P1201]
 gi|95832108|gb|ABF57508.1| putative DNA primase [Corynebacterium phage P1201]
          Length = 881

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 145/871 (16%), Positives = 271/871 (31%), Gaps = 128/871 (14%)

Query: 8   EQAKQAIHNGFK-LIPLRLGDKRPQRLG-----KWEEQLLSSEKIDKLPACGFGFVCG-- 59
           E A++ I  G+    PL  G K P   G      +       E  D +     G      
Sbjct: 30  EVAEEYIRKGWTAPFPLPEGQKSPPIPGVTGGVPYITPERIEELWDGVEGANLGLRLQSD 89

Query: 60  -VGEQPLYAFDIDSKDEKTANTFKDTFEILHGT--------PIVRIGQKPKILIPFRMNK 110
             G Q + + DID    K  +      E   G+           R  + P   I FR+  
Sbjct: 90  VEGSQEIISIDIDHYGTKRGDDHLRELESQLGSLNRDSVWRSTRRGIRNPSGQIFFRVPP 149

Query: 111 E-GIKKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPH-----RFKVEDTP 163
               + K        ++DI+  G +Y V +        +Y W +P          V+D P
Sbjct: 150 GLKWESKACI-----NVDIVQMGHRYSVVWPSVSG-DSQYKWISPEGVFADSPPYVKDLP 203

Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKS----------------IIPSKTWTNNNNRQYTN 207
            + E  V +L    +         + +                 +    W +  +   ++
Sbjct: 204 EMPEAWVTHLTNGVKRGAFTAKSSRSTFTGSGGDKYRAAIDWLRLNLPGWVSKVSEDGSS 263

Query: 208 REITAFLS--------CFGEEFYNGSHDEWIPVVMAVHHETRG---------------SS 244
            + +             F ++  N  HD    +V AVH   R                S 
Sbjct: 264 DKSSMSNPLAKVSSGEKFLDDIQNNGHD---TMVSAVHSAIRLGVEGHAGVKVALGTISD 320

Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF-------------TSLF 291
           +  E      ++  +  E  F             +      T                + 
Sbjct: 321 RFYEAVIEGQRRSRSSAEAEFERAVVGEVERVREEIEAGDLTIFQESADFAVGNLSDLIV 380

Query: 292 YHHGKLIPKGLLASRF---SDAYNKAMFSIYKKGHFLYTADTKA------WYKKDKNNVY 342
               +  P+G+        +D  N  +++ Y     L   + +       W  K     +
Sbjct: 381 SAESERKPQGITRLSSYGDNDFDNARIYASYWGTDVLVDPNAETSKRFARWSSKMGRFTF 440

Query: 343 IWSL-----------TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
                             K  A      V   E+     +  E+ +   +S +   +   
Sbjct: 441 SSRGEMYNTVAIGLAQRLKYEAEQRELEVMALEEKAAKGQITEEESDMIESLQAMADNLN 500

Query: 392 RRQNVEEN-SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDL--ETGQKVKPT 447
           RR +   N          L +     +++   DS   +LG   G  LDL  ET +     
Sbjct: 501 RRSSRLLNTPAMNHVLDQLSSIDEIKVSALDFDSIGEYLGVAGGKTLDLSEETFRVRDSE 560

Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
           K   +T ST   F +      +   +  +     +  +  + +G +L+ GN  +  + + 
Sbjct: 561 KSDMLTMSTRAIFQKNATHPNWEKFLERFLPDPTLRRFVQKVMGYSLVDGNPEKVMVFLF 620

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G   +GK+T++  I  A G+          +        G  N  ++  +  R+V +SE 
Sbjct: 621 GPNHTGKTTILEAIGSALGDYASPINAVKLL----GRNTGGPNSEVLANVNRRMVFMSEI 676

Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + E++A  +KQ+TG D    R  +         SFTP++  N    ++  D+A   R 
Sbjct: 677 GTDYELSANSLKQVTGNDSQQLRGVHSAEVIAKTPSFTPYVATNSIPGIQGGDEALSNRL 736

Query: 628 IVIPFDK----PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI-PEVCLKA 682
           ++IPF+K     +   ++ F+  +          W L+G + Y  +GL  D  PE+    
Sbjct: 737 LIIPFNKSNKFSVKKEESIFSPMVY----PAIFWWLLEGFQMYKEEGLSRDEWPEIIRDT 792

Query: 683 KEEERQGTDTYQAWIDDCC--DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
            ++          +          +        +  ++  +   E        S      
Sbjct: 793 SQKFSGEISPVHEFASRHLAKVSDKKTIALREEVDMAWKTFAVDEGIPIHN-FSLNEFHK 851

Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
            LK  GF     R  +        + +G++L
Sbjct: 852 TLKSLGFTSA--RTTVNGTPNRH-VYRGVQL 879


>gi|169825390|ref|YP_001691283.1| hypothetical protein M446_7040 [Methylobacterium sp. 4-46]
 gi|168199312|gb|ACA21258.1| hypothetical protein M446_7040 [Methylobacterium sp. 4-46]
          Length = 450

 Score =  283 bits (724), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/437 (18%), Positives = 147/437 (33%), Gaps = 33/437 (7%)

Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
           Y   +   + W+ T      +   F       V                 +    +  ++
Sbjct: 39  YDHGQALWFEWAGTCWVPDTTGGVFDRC--HTVVQ--------------EQMRLLSPKKQ 82

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
             +          +       F   S+  D     LG   G++DL TG+  +      IT
Sbjct: 83  VRLGTAKFVSGVEKLCRHARTFVAQSEDWDGDPMVLGTPGGVVDLTTGKMRRAEPGDRIT 142

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
           K T     +      FL  ++        +M +  +  G +L G       + + G GG+
Sbjct: 143 KQTAVAPADTADCPRFLRFLNEATGSDLGLMRFLQQWAGYSLTGRTTEHAVVFVFGGGGN 202

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
           GKS  + ++  A  +        + +         +    L  L G+R V  SET E   
Sbjct: 203 GKSVYLKVLATALASYAATATMDAFVASK----HAQHTTDLAMLKGARFVSASETQEGRA 258

Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
            + A++K  TGGD +TAR  + +       +    IV N    +R  D+A  RR  ++PF
Sbjct: 259 WDEARLKSFTGGDAITARFMHRDNM-TFVPTCKITIVGNHKPKIRTVDEAMRRRLNIVPF 317

Query: 633 DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
            +  A  D    +KL         +W + G   +   GL    P+  L A +E     D 
Sbjct: 318 IRKPAEPDPDLERKL-LAELPGILRWPIDGCLDWQEHGL--IRPDAVLAATDEYLADEDL 374

Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
           +  W++D C +     +        Y+ + +       +  +   +   L + G      
Sbjct: 375 FGQWVEDRCKVDPGNRQMRTPNQDLYASWCDFAERVGARHGTLHELGEKLSKLGLA---- 430

Query: 753 REKIEKEWKSKRIIKGL 769
                 +    R  +G+
Sbjct: 431 ----RYKSGGVRGFEGI 443


>gi|148257830|ref|YP_001242415.1| putative phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
 gi|146410003|gb|ABQ38509.1| putative Phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
          Length = 624

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 85/555 (15%), Positives = 162/555 (29%), Gaps = 92/555 (16%)

Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT 330
            F+     D A       +      + I         +D  N      +     ++  D 
Sbjct: 45  NFEGAGEEDVAPADDERPADADTLPREIIVACSHEPQNDTGNGKRLLQWFGADLVHVRDM 104

Query: 331 KAWYKKDKNNVYIWSLTLDKITASI----------MNFLVSMKEDVFDLSEEPEDNNK-- 378
                      + W  T  +    I             +V   + +     E +  +   
Sbjct: 105 G---------WHAWVGTHWEREGGIEAATRCAQKVAERIVLEADVMAATPNEQKAIDAAS 155

Query: 379 ---------------NSKSPRFWF-------------------NTDYRRQNVEENSKAKS 404
                           ++  + W                        R+  +   + AK 
Sbjct: 156 QARDAAGAIEAAKGAEARKDQRWQMLMRVVAAGEAAQTALASRQVARRKYAISSGNAAKV 215

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--------------------V 444
                +A    +I  D LD+       ++G L     +                      
Sbjct: 216 RNMLDQAMPHHTIEIDKLDADKLAFNVRNGTLCFVADEMPDPDASDHSNQVLKRWRVEFR 275

Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
           +  +  Y+TK     +        F   +  +  S ++  +  R  G AL G    Q  I
Sbjct: 276 EHNRADYMTKVAPVDYDPKAKCPTFDASLRRFQPSADIRRFLQRYHGYALTGLTGEQCLI 335

Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
              G G + KST + L+    G         S I  +      +A+P   RL G R++  
Sbjct: 336 FNYGGGSNWKSTFVELMCRISGPYAQTIPFES-ISGDVQKSGSQASPEFARLPGCRLLRA 394

Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
            E + N +     IK +TGG+ M  R N+ + + E    F   +  N    +   D   W
Sbjct: 395 GEPDPNVQFKEGLIKSLTGGEPMLTRANFKD-FFEFRPDFKIVLSGNHKPKISGVDHGIW 453

Query: 625 RRYIVIPFDKPIANRDASFAQK---LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
           RR  ++P+   IA+ +                    W + G   Y++ GL    P   + 
Sbjct: 454 RRINLVPWGITIADHEKRPMPDVLAELMAEASGILNWLVAGTLNYLNGGLKP--PPEVVA 511

Query: 682 AKEEERQGTDTYQAWIDDCCDI-------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734
           A    R+  D   A++  C  +           +  +  +  ++  +       ++K   
Sbjct: 512 ATAAYRERMDPVGAFVGQCVTVLPPPAAHAGAAFVPARQMYGAFVAWCSVN---EQKPWG 568

Query: 735 TRTVTLNLKQKGFIG 749
            +     +++KGF  
Sbjct: 569 EKAFAGVMEEKGFER 583


>gi|310831484|ref|YP_003970127.1| putative VV D5-type primase/helicase [Cafeteria roenbergensis virus
           BV-PW1]
 gi|309386668|gb|ADO67528.1| putative VV D5-type primase/helicase [Cafeteria roenbergensis virus
           BV-PW1]
          Length = 877

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 101/614 (16%), Positives = 209/614 (34%), Gaps = 57/614 (9%)

Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENF 265
           + EI   L          ++++WI V   +++  R           +SK     + +   
Sbjct: 288 DTEIAQHLIKMLSVDRASNYEDWIRVGYCLYNIDR---TLLNEWINFSKLCPSKFKKGEC 344

Query: 266 NYKWDTFDFEEI---------GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMF 316
              W      +                   + + F +H       L  +        A++
Sbjct: 345 ENLWKKMKSGQNMYTIRSLHRWAKEDNYLDYNT-FKNHEYNNLFKLSLTGDHQNIANAIY 403

Query: 317 SIYKKGHFLYTADTKAWYKKD--KNNVYIWSLTL---DKITASIMNFLVSMKEDVFDLSE 371
           S Y+      +   K WY+ +  ++             +IT   +N  +++   ++  + 
Sbjct: 404 SKYQTEFVCSSIKNKVWYQYNYSQHKWEKIENGYALTSRITNEFVNEYLNLSSQLYQKAT 463

Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
           E E + K     +           +   S   +   SL         ++ LD     +G 
Sbjct: 464 EAEPSQKMD-ILKEVEKIQGLVNRLNNESFLSTLMTSLSRRFYLPKFAEDLDEKYDLIGF 522

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE----FLDLVSGYFESEEVMDYFT 487
            +G+ DL+ G       E Y+T +TG  + + +   E     + L        E  +Y  
Sbjct: 523 NNGVFDLKKGIFRNGHPEDYLTMTTGLDYQQLDTDSEEYIACMKLFEDIHPDVETREYVY 582

Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
                 + G +K +      G G +GKS    L+KY  G+  +++   + + + R   + 
Sbjct: 583 TLFSTFISGHHKEETLHLFNGCGSNGKSVTFELLKYCLGDY-IMSVPVTLLTRKR-AGSE 640

Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
            A P L +L G R+ ++ E  E ++++   +K++TG D +TAR  + +            
Sbjct: 641 NATPMLAQLKGKRLGVLQEPEEGEKLHVGLMKELTGNDEITARPMFESP-ITFKPQIKFA 699

Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-----------DASFAQKLETKYTLEAK 656
           I  N    V   D   WRR  VI       ++           D +  +KLE     +  
Sbjct: 700 IPCNNLPEVPARDKGTWRRLRVIDHLMEFVDKPNQKYPNQKQIDRTLKEKLE-GMAGQFM 758

Query: 657 KWFLKGVKA-YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHS 713
            + +      Y+ KG+ V  P     +     Q  +  + + +   ++   +       +
Sbjct: 759 SFLIDRYINVYVKKGMKV--PNSVTFSTNVYNQDNNCIKQFCESKFEVTGKKTDTISQKT 816

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
           + + + +Y ++E   +++ I  R     L         K        K  +   G+    
Sbjct: 817 IWEEFKQYFKEEQEGNKRPI-QREFYSYL--------DKTYGQAISGKGGKKYCGI---- 863

Query: 774 AFESVDDNSNIIDF 787
            F   D+ +  +D 
Sbjct: 864 IFSGDDEENEDVDL 877


>gi|15920509|ref|NP_376178.1| hypothetical protein ST0314 [Sulfolobus tokodaii str. 7]
 gi|15621292|dbj|BAB65287.1| 862aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 862

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 121/834 (14%), Positives = 243/834 (29%), Gaps = 95/834 (11%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKLPA-----CGF 54
           M  ++W   AK  I +GF +IPL   DKRP     +++++  + E+  K          +
Sbjct: 1   MDRVEW---AKWFIQHGFVVIPLNKDDKRPAIEWKEYQDRKPTDEEYQKFLKMIEEGHNY 57

Query: 55  GFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114
             + G     L   D + K+   A   +D    L    +  +      +  +    E   
Sbjct: 58  AVLGG--HNNLVILDFEDKELLKAWIGEDELTKLCKNTLC-VNTVHGGIHIYVTADEIPP 114

Query: 115 KK---KTTESTQGHLDILGCGQYFVAYNI---H--------PKTKKEYTWTTPPHRFKVE 160
           +K      +  +G  D+     Y V       H        P   ++YT           
Sbjct: 115 QKFNPAFIKDGKGIADLQSFRSYVVGPESCVNHKTCSTDKCPWKGQDYTTCYTSINNN-- 172

Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
               + + D++ +  F  E    +  +     PS+        +    E+ A    + E 
Sbjct: 173 ---EIRKADLKGILNFLIEKGKKIGIE-----PSRGVIEWLGDRK--EELKAEDKHYEEF 222

Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
                       V    ++  G  K   +  +   +G TY +   +     F   +    
Sbjct: 223 IAELKKKNKFKSVEEAKNKICGKLKHSSLEYKVICEGKTYADVGIDRSRGDFRVIKTSLY 282

Query: 281 AKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
              R     L         K          +   + + +        A   +   K K  
Sbjct: 283 HGLRDPDLILQVLPEDSKAKNNEKWDSRKYFLITLKNAWSVVSKYLEAKNISKEDKSKAK 342

Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400
             +     ++IT          K+   +        +K       +  T  +  N +   
Sbjct: 343 QIVIEAIAEEITREHRLVTFKGKDQAKEYVIGLFRFSKKKGIYEPFDVTIEKIINDKLEE 402

Query: 401 KAKSTAQSLEAGSIFSITSDL-------LDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
                  S +   + +I  ++       L      +  ++G L+           +   +
Sbjct: 403 YRDFPLGSDKTRVVKNIKDEIMRRTLRPLVKEPMRIAFRNGTLEWNDKDITWYDTKERTS 462

Query: 454 KSTGTPFVEGEP-------------------------SQEFLDLVSGYFESEEVMDYFTR 488
           +     ++                               + L+    + + + +      
Sbjct: 463 RVYAFHYIPWSVKIDEIIKFERKEIKVQDIENLARGVCPKSLETFKSWVDDKWI--LLFE 520

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
            +G  L       + + + G G +GKST +NL+    G   V                  
Sbjct: 521 VIGYTLYPRYDFNKAVLLVGNGSNGKSTFLNLLLKILGKNNVSAVPL-------KRIIDG 573

Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
              + I L      I SE       N    K++TG D +  +  + +             
Sbjct: 574 DKFASIELYHKLANISSELFAFKITNTDTFKKLTGEDYIEGQKKFRDP-IYFINYAKLIN 632

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
             N+   V++    +WRR++VI F          F +              +      I 
Sbjct: 633 STNELPVVKDQTYGFWRRWLVIEFPHQFDPDPTFFDRTFSKDEIEGIITVSILAFARVIQ 692

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE--------NLWEESHSLAKSYSE 720
           +    D  +     KE+  + +DT  A+I D  + G+        NL+     L   Y+E
Sbjct: 693 QK-KFDFEDSSADIKEKWERASDTVYAFIKDLIESGKVEYDPKNGNLFVSKKKLYSMYTE 751

Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
           +  +    ++K     T T  L+ +     I +++     +      G+KLK  
Sbjct: 752 WCNEN---EKKPEPQSTFTKRLESR---FRIVKQRKRIGGERDWCYVGIKLKED 799


>gi|189043238|ref|YP_001936177.1| gp86 [Mycobacterium phage Adjutor]
 gi|188090889|gb|ACD49671.1| gp86 [Mycobacterium phage Adjutor]
          Length = 983

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 142/993 (14%), Positives = 264/993 (26%), Gaps = 233/993 (23%)

Query: 6   WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56
           ++   +     G+   +PL    K+  P           S + I                
Sbjct: 13  FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72

Query: 57  VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100
             G  E          L   D+D  +     ++           L   P       +   
Sbjct: 73  HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYTSSSRTGV 132

Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147
             +  F +  +             H+DI+    +Y + +   HP               +
Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188

Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172
           Y W  P             V D PLL +  VE                           +
Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
                           K     K W        +  +                H  W   
Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308

Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263
           + A         + +  +            SK                      + Y+  
Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368

Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
               + D F                E    + + R  +           P+       SD
Sbjct: 369 --ADELDAFTASLNSAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424

Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
             N   +    K +  Y      W      +  +     ++    +        E +   
Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484

Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
           + E +     + +        +R                  A     I    L+++   +
Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPALI 544

Query: 430 GEQ---------------------------------------DGILDL------------ 438
             +                                       +G  ++            
Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGHNGRNGRNGTANVASLVEDDEEFDL 604

Query: 439 --------ETGQKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSGYF 477
                      +  +  +E  +T STGT ++  +              +  +   V  Y 
Sbjct: 605 DYEAVAPNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYL 664

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
             EEV  +  + +G +LLG N+ +  + + G  GSGKST +N    A G+   +  +   
Sbjct: 665 PDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGDYADV-VDLGI 723

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
              +R     + NP+L   +  RIV  SE ++ + ++A   K++TGGD +TA L Y N  
Sbjct: 724 FKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNES 778

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAK 656
            +   +F P+I  N    +   D A   R +V+ F++ I  +D      L +        
Sbjct: 779 VKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVL 838

Query: 657 KWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC--------------- 700
            W ++G   Y  +GL   D P        E          +I +C               
Sbjct: 839 AWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISECVEEAPVSLRRKAERR 898

Query: 701 ----CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
               CD  E        +   Y  + ++    DR  +     +  LK  G+    + E +
Sbjct: 899 NWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAEVV 954

Query: 757 EKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
           +K+  + R   G KL         N+ ++  ++
Sbjct: 955 KKDGFTSRTYAGFKLNS------PNARVLKLQK 981


>gi|206599705|ref|YP_002241584.1| gp86 [Mycobacterium phage Butterscotch]
 gi|206282887|gb|ACI06374.1| gp86 [Mycobacterium phage Butterscotch]
          Length = 983

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 141/975 (14%), Positives = 258/975 (26%), Gaps = 227/975 (23%)

Query: 6   WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56
           ++   +     G+   +PL    K+  P           S + I                
Sbjct: 13  FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72

Query: 57  VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100
             G  E          L   D+D  +     ++           L   P       +   
Sbjct: 73  HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYTSSSRTGV 132

Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147
             +  F +  +             H+DI+    +Y + +   HP               +
Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188

Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172
           Y W  P             V D PLL +  VE                           +
Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
                           K     K W        +  +                H  W   
Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308

Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263
           + A         + +  +            SK                      + Y+  
Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368

Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
               + D F                E    + + R  +           P+       SD
Sbjct: 369 --ADELDAFTASLNSAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424

Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
             N   +    K +  Y      W      +  +     ++    +        E +   
Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484

Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
           + E +     + +        +R                  A     I    L+++   +
Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPALI 544

Query: 430 GEQ---------------------------------------DGILDL------------ 438
             +                                       +G  ++            
Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGHNGCNGRNGTANVASLVEDDEEFDP 604

Query: 439 --------ETGQKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSGYF 477
                      +  +  +E  +T STGT ++  +              +  +   V  Y 
Sbjct: 605 DYEAVAPNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYL 664

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
             EEV  +  + +G +LLG N+ +  + + G  GSGKST +N    A G+   +  +   
Sbjct: 665 PDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGDYADV-VDLGI 723

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
              +R     + NP+L   +  RIV  SE ++ + ++A   K++TGGD +TA L Y N  
Sbjct: 724 FKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNES 778

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAK 656
            +   +F P+I  N    +   D A   R +V+ F++ I  +D      L +        
Sbjct: 779 VKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVL 838

Query: 657 KWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC--------------- 700
            W ++G   Y  +GL   D P        E          +I +C               
Sbjct: 839 AWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISECVEEAPVSLRRKAERR 898

Query: 701 ----CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
               CD  E        +   Y  + ++    DR  +     +  LK  G+    + E +
Sbjct: 899 NWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAEVV 954

Query: 757 EKEWKSKRIIKGLKL 771
           +K+  + R   G KL
Sbjct: 955 KKDGFTSRTYAGFKL 969


>gi|109522857|ref|YP_655277.1| gp81 [Mycobacterium phage PBI1]
 gi|88910570|gb|ABD58497.1| gp81 [Mycobacterium phage PBI1]
          Length = 983

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 141/975 (14%), Positives = 258/975 (26%), Gaps = 227/975 (23%)

Query: 6   WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56
           ++   +     G+   +PL    K+  P           S + I                
Sbjct: 13  FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72

Query: 57  VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100
             G  E          L   D+D  +     ++           L   P       +   
Sbjct: 73  HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYTSSSRTGV 132

Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147
             +  F +  +             H+DI+    +Y + +   HP               +
Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188

Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172
           Y W  P             V D PLL +  VE                           +
Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
                           K     K W        +  +                H  W   
Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308

Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263
           + A         + +  +            SK                      + Y+  
Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368

Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
               + D F                E    + + R  +           P+       SD
Sbjct: 369 --ADELDAFTASLNSAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424

Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
             N   +    K +  Y      W      +  +     ++    +        E +   
Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484

Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
           + E +     + +        +R                  A     I    L+++   +
Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPALI 544

Query: 430 GEQ---------------------------------------DGILDL------------ 438
             +                                       +G  ++            
Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGHNGRNGRNGTANVASLVEDDEEFDP 604

Query: 439 --------ETGQKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSGYF 477
                      +  +  +E  +T STGT ++  +              +  +   V  Y 
Sbjct: 605 DYEAVAPNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYL 664

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
             EEV  +  + +G +LLG N+ +  + + G  GSGKST +N    A G+   +  +   
Sbjct: 665 PDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGDYADV-VDLGI 723

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
              +R     + NP+L   +  RIV  SE ++ + ++A   K++TGGD +TA L Y N  
Sbjct: 724 FKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNES 778

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAK 656
            +   +F P+I  N    +   D A   R +V+ F++ I  +D      L +        
Sbjct: 779 VKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVL 838

Query: 657 KWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC--------------- 700
            W ++G   Y  +GL   D P        E          +I +C               
Sbjct: 839 AWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISECVEEAPVSLRRKAERR 898

Query: 701 ----CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
               CD  E        +   Y  + ++    DR  +     +  LK  G+    + E +
Sbjct: 899 NWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAEVV 954

Query: 757 EKEWKSKRIIKGLKL 771
           +K+  + R   G KL
Sbjct: 955 KKDGFTSRTYAGFKL 969


>gi|46578606|ref|YP_009414.1| P4 family phage/plasmid primase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448017|gb|AAS94673.1| phage-plasmid primase, P4 family [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 561

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 91/499 (18%), Positives = 182/499 (36%), Gaps = 45/499 (9%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF----LVS 361
           + +   +  +F+   +G F+Y    K W +  +   + W   + + + + +       + 
Sbjct: 62  KANRVGDAMLFNALHRGKFVYV---KRWGRFIRWAGHHWEEDIMETSQAAVEAVCEAYLR 118

Query: 362 MKEDVFDLSEEPEDNNK---NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
               +   +++   + K     K         + R         + T    +     +IT
Sbjct: 119 AVSSLSKQADDAVGDEKALLERKREELLKRVSFLRAPSGREQLLRCTHTIADP---LAIT 175

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYF 477
            D LD     L  ++G++DL TG+      + Y+  +    +     P  +F   +    
Sbjct: 176 GDELDQQPFLLACRNGVIDLRTGEFRPGHPDDYVLNACPIEWPGIDAPCPQFERFMYSCH 235

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEA- 535
           E+E ++ +  R  G  ++G      +    G  G +GK TL+ ++    G+      +  
Sbjct: 236 ENEAIVSFLQRVFGYGIMGARDDHYWFVFYGARGRNGKDTLLKILTAILGDDLASTIDTA 295

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +   +P  +   +P ++ L G R+   +E  +  +   +KIK +TGG  + AR     
Sbjct: 296 LLLDTKQPRSSAGPSPDVLALRGKRMAFATEAEDGQKFAMSKIKWLTGGSNLMARGLQDK 355

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---------RDASFAQK 646
            Y+    +   F++ N+    +  DDA+W R + +P+     +         RD     K
Sbjct: 356 LYTTWKQTHLLFLLTNEIPRAKADDDAFWTRTLAVPWKLRFVDHPTTPDERPRDPQMEHK 415

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD---- 702
           L  K       W ++G   Y   GL+   PE  L    E R+  D    ++ +CC+    
Sbjct: 416 L-MKELPGILAWLVRGCLEYQRVGLNP--PEEVLACTRERRRAFDDVGRFLTECCEIEQV 472

Query: 703 ---IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
              I       +  L  ++  +   +        S R +   L +KG         I K+
Sbjct: 473 VEGIEPATRTSATVLLNAF-NWWLHKNVDSSYSYSARRLGDILAKKG---------IPKK 522

Query: 760 WKSKRIIKGLKLKPAFESV 778
                +  G+ L P  E  
Sbjct: 523 KSGGMVYLGVSLLPEVEDE 541


>gi|24575137|gb|AAL06708.1| putative primase/helicase [Streptomyces globisporus]
          Length = 474

 Score =  280 bits (715), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 143/407 (35%), Gaps = 29/407 (7%)

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
           GLL    +D  N  +F       + +               Y W  T  +          
Sbjct: 67  GLLPDSLTDRGNAKLFVRLYAQDYRHV---------TGLGWYRWDGTRWQSDEDDT---- 113

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGSIFSITS 419
                ++   E  E          +      + R+     S   +      +     +++
Sbjct: 114 ----VLWVAGEMAESIAATDPRGVYSDAALRKHRRRALSTSGINALLSQARSAPGMVLSA 169

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
             LD+    L    G++DL +G+      +      + +      P+  +   ++  F  
Sbjct: 170 GALDADPYMLCTPAGVVDLRSGKLRAADPDRDFHSRSTSIGPRQMPTPRWDLFLTDTFGD 229

Query: 480 E----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
           +    E++ +    +G +L G   AQ    + G G +GKS L++++    G+        
Sbjct: 230 DARGREMIRFLHLLLGYSLTGDVGAQVMPFLFGSGKNGKSVLLDVLIKLLGDYADAAPPG 289

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             + +            L  L G R+++ SE    D  + +++K +TGGD + AR     
Sbjct: 290 FLMARPFE----GHPTDLAELHGRRVIVCSEVKPGDRFDESRVKLLTGGDRIKARRM-RQ 344

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTL 653
            +     +   +++ N    V     A+WRR  +IPFD+ ++++    + A  L T+   
Sbjct: 345 DFFSFAPTHKLWLLGNHRPEVGTGGYAFWRRMRLIPFDRVVSDQQKIDNLADILVTEEGP 404

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
               W + G   Y++   D+  PE    A     +  D    ++ + 
Sbjct: 405 GILNWLITGAHHYLNSPRDLTGPETVRIATTAYAETEDHTGRFLTEH 451


>gi|15921192|ref|NP_376861.1| hypothetical protein ST0954 [Sulfolobus tokodaii str. 7]
 gi|15621977|dbj|BAB65970.1| 902aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 902

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 123/869 (14%), Positives = 271/869 (31%), Gaps = 138/869 (15%)

Query: 2   PVMQWKEQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGF 54
             +QW   AK+ + +G+ +IP+    K+P  +   K+  Q LS E   K          +
Sbjct: 3   ERLQW---AKEFVESGYAIIPIDPQSKKPVIKEWEKYSTQPLSDEDKQKFLKMVEDGYNY 59

Query: 55  GFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF-------- 106
             VCG     L   D ++K+   +   +     +    +  +      L  +        
Sbjct: 60  AVVCGQ--HGLVVLDFENKELLKSWIGESVVNDICSKTLC-VDTPHGGLHIYLISNDIPP 116

Query: 107 -RMNKEGIKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVE 160
            + N   +K  +T    Q +   +LG        N      P   ++YT         + 
Sbjct: 117 HKFNPAFVKDNETVMDLQSYKSYVLGPESCINHKNCSTDKCPWRGQDYTTCYTAE-MPLG 175

Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
           +  L S+ D++ L KFF E    L  +  + +                ++   ++ +   
Sbjct: 176 NVILGSDVDLKGLLKFFIEKGKKLGIEPSARLLEWLGDEVKKEDEKLEKLKEEMAKYDRF 235

Query: 221 FYNGSHDEWIPVVMAV-HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279
                      V   +         K  + +++WS   +T +      K      E   D
Sbjct: 236 KGKTVEAIREEVCKEISKELEELKGKDDKKSKKWSAILTTAESAVCEGK---TYAEIGID 292

Query: 280 TAKKRSTFTSLFYHHGKLI----------PKGLLASRFSDAYNKAMFSIYKK-------- 321
            ++    F  + + HG                + A ++   Y   +  +++K        
Sbjct: 293 RSRGDWAFYYVLFSHGATNLDVLEQLLPSDSKVFAPKWDKYYVHTVKKVWEKVKPLLEFQ 352

Query: 322 --------------------GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM-NFLV 360
                               G  L     K +Y+   +N  +  +        +   F  
Sbjct: 353 AQVKGKKEKEAKKIAKSIITGTILRLHKIKTFYQVTGHNQAVIGVFKWDKKKGVYTPFDK 412

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
            +++++ +++E  E  +++    +       +R   +   + K    +            
Sbjct: 413 GLRKEIREIAEMLEIRSRDKTLAQ-----LSKRDVDDIFDEIKDLTLTPLPKEPLR---- 463

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVS----- 474
                   +  ++G L+      +    +    K     ++  E   +E    ++     
Sbjct: 464 --------IAFKNGTLEWTEKGIIWYDAKERSPKVYSFYYLPWEVKVEEIEKFMNKEITV 515

Query: 475 -------------------GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
                               + + + V       +G  L    K ++   + G GG+GKS
Sbjct: 516 KDIEELASRLCPKSLETFKQWVDDKWV--LLFEIIGYTLYPEIKFRKAFMVIGSGGNGKS 573

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
           T +NLIK   G+  V  +              +       L       ++E+      + 
Sbjct: 574 TYINLIKKILGDYAVSISPRELFD-------PQNRFIAGNLYHKLANAVAESKNYTIEDM 626

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD-AWWRRYIVIPFDK 634
            + K++TGGD +TA + + +            I  N    VR+ DD A+W R++++ F  
Sbjct: 627 DRFKRLTGGDWITADVKFKDP-ITFKNIAKLIIASNNMPAVRDTDDKAFWHRWVLVEFPH 685

Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
              + D  F +    +         +  +      G   D  +   +  +      D+  
Sbjct: 686 EFKDNDTWFDKVFTEEEINGIVTTSIMAISRAFQMG-HFDFEQNEKEVMDLWLSHIDSVY 744

Query: 695 AWIDDCCDIG--------ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           +++    + G         +L  E   L K Y +Y         + +   + +  L+   
Sbjct: 745 SFVKTYAEKGILTVDPKNGDLVVEKKRLYKMYRDYCN---TMGFRGVGPNSFSRKLRTYF 801

Query: 747 FIGGIKREKIEKEWK--SKRIIKGLKLKP 773
            I   ++    K+ K   ++ + G+ +  
Sbjct: 802 NISTDRKVVGYKDGKPIRRKFLVGIGINE 830


>gi|86604320|gb|ABD13938.1| predicted ATPase [Lactobacillus reuteri]
          Length = 333

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 131/312 (41%), Gaps = 19/312 (6%)

Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           + + ++ +F   + +++Y    VG+  +G    +  I   G G +GKST  N I    G 
Sbjct: 35  WQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGT 94

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
                +  +     R        P +  + G R++I +E  E   +N + +KQ+   D +
Sbjct: 95  YTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEI 150

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQ 645
            A   Y   +S    S T  +  N    V   D+  WRR IVIPF   IA R+   ++AQ
Sbjct: 151 YAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKAKIAKRNDIKNYAQ 209

Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
           +L  K      +W ++G +  I +   +  P    KA        D    ++++ C++  
Sbjct: 210 RLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDWLGHFLNENCELDP 269

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
           +  ++S  L + Y EY +    Y R   ST      LK  GF    K+        + R 
Sbjct: 270 SYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTALKNAGFQRQHKQ--------NGRF 318

Query: 766 IKGLKLKPAFES 777
           IKGL+LK   + 
Sbjct: 319 IKGLRLKVEADE 330


>gi|46581285|ref|YP_012093.1| P4 family phage/plasmid primase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450706|gb|AAS97353.1| phage-plasmid primase, P4 family [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234949|gb|ADP87803.1| phage/plasmid primase, P4 family [Desulfovibrio vulgaris RCH1]
          Length = 561

 Score =  279 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/499 (18%), Positives = 182/499 (36%), Gaps = 45/499 (9%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF----LVS 361
           + +   +  +F+   +G F+Y    K W +  +   + W   + + + + +       + 
Sbjct: 62  KANRVGDAMLFNALNRGKFVYV---KRWGRFIRWAGHHWEEDIMETSQAAVEAVCEAYLR 118

Query: 362 MKEDVFDLSEEPEDNNK---NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
               +   +++   + K     K         + R         + T    +     +IT
Sbjct: 119 AVSSLSKQADDAVGDEKALLERKREELLKRVSFLRAPSGREQLLRCTHTIADP---LAIT 175

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYF 477
            D LD     L  ++G++DL TG+      + Y+  +    +     P  +F   +    
Sbjct: 176 GDELDQQPFLLACRNGVIDLRTGEFRPGHPDDYVLNACPIEWAGIDAPCPQFERFMYSCH 235

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEA- 535
           E+E ++ +  R  G  ++G      +    G  G +GK TL+ ++    G+      +  
Sbjct: 236 ENEAIVSFLQRVFGYGIMGARDDHYWFVFYGARGRNGKDTLLKILTAILGDDLASTIDTA 295

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +   +P  +   +P ++ L G R+   +E  +  +   +KIK +TGG  + AR     
Sbjct: 296 LLLDTKQPRSSAGPSPDVLALRGKRMAFATEAEDGQKFAMSKIKWLTGGSNLMARGLQDK 355

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---------RDASFAQK 646
            Y+    +   F++ N+    +  DDA+W R + +P+     +         RD     K
Sbjct: 356 LYTTWKQTHLLFLLTNEIPRAKADDDAFWTRTLAVPWKLRFVDHPTTPDERPRDPQMEHK 415

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD---- 702
           L  K       W ++G   Y   GL+   PE  L    E R+  D    ++ +CC+    
Sbjct: 416 L-MKELPGILAWLVRGCLEYQRVGLNP--PEEVLACTRERRRAFDDVGRFLTECCEIEQV 472

Query: 703 ---IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
              I       +  L  ++  +   +        S R +   L +KG         I K+
Sbjct: 473 VEGIEPATRTSATVLLNAF-NWWLHKNVDSSYSYSARRLGDILAKKG---------IPKK 522

Query: 760 WKSKRIIKGLKLKPAFESV 778
                +  G+ L P  E  
Sbjct: 523 KSGGMVYLGVSLLPEVEDE 541


>gi|319783591|ref|YP_004143067.1| phage/plasmid primase, P4 family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169479|gb|ADV13017.1| phage/plasmid primase, P4 family [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 451

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 151/470 (32%), Gaps = 46/470 (9%)

Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
              +D      F+        Y      W     +   ++   +      I+      + 
Sbjct: 19  KEHTDEALALEFARRHAMRTRYV---DGW-----SRWMLFDGVVWAP-DEILTVYNYARA 69

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
              D +      +                  +       +      +    +   D  D 
Sbjct: 70  LCRDDAANALPRDGGR---------------ILSAKTVAAVVSLARSDPALAAVVDQWDE 114

Query: 425 SSRFLGEQDGILDL-ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
               L     ++ L   G   +     Y+TKST      G     +L+ ++        +
Sbjct: 115 DPMALNCDGEVVQLGAEGCSRRVIPGDYMTKSTAV--GPGGDCSLWLEFLNLVTSGDGAL 172

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
           +DY  R  G  L G         + G GG+GKST +  I    G+        +      
Sbjct: 173 IDYLQRVCGYCLTGLTVEHALFFLWGPGGNGKSTFIETISGVVGDYAKTAGIDTFTA--- 229

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
              + +    L  L G+R+V  +ET +    +  +IK +TGGD ++AR      + E   
Sbjct: 230 -SASDRHPTDLAALQGARLVTATETAKGRSWDETRIKTLTGGDRISARYM-RQDFFEYSP 287

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ-KLETKYTLEAKKWFLK 661
            F   I  N    + N DDA+ RR+ +IPF   I +            +       W ++
Sbjct: 288 QFKLMIAGNNKPALVNVDDAFRRRFHMIPFIVRIPDDKRILGFSDRLREEWPGILAWMIE 347

Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
           G   +   GL    P   + A +E     DT  AW+++C +   + +E   SL  S+  +
Sbjct: 348 GAGHWRRLGLSP--PPAVVAATQEYLDSEDTIGAWLEECTERVADGFESRQSLFSSWKAF 405

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
             +         + +     L  +  I   KR          R   G+++
Sbjct: 406 AARTGE---NPGTQKQFVSALAGRTGIYPHKR-------HGVRGYLGIRI 445


>gi|327396932|dbj|BAK14298.1| phage-related protein [Red sea bream iridovirus]
          Length = 920

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/606 (15%), Positives = 182/606 (30%), Gaps = 87/606 (14%)

Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT- 271
           L            + W+ V   ++     S  G  +   +S +    ++    +  W+  
Sbjct: 296 LVDMLPASVAADRNTWLKVGFCLYQVMDASEDGLRLWMSFSAKCPEKFNATVCHDMWERQ 355

Query: 272 -----FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326
                +    +   AK+ ST     + H + +    L           M+S     +   
Sbjct: 356 MRPNMYTIATLRYLAKQYSTEAYDAWTHSQWMSAERLKLTHVS-LASIMYSALGTHYVCG 414

Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
               + WYK D     +W+     +  S+++        V +       + +  +    +
Sbjct: 415 NIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLASVASGQVPEPDESF 471

Query: 387 FNTDYRRQNVE-ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445
               +R   +   +    S  +              LD++   +   +G+ D +T     
Sbjct: 472 LKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYDFKTRTFRP 531

Query: 446 PTKELYITKSTGTPFV-----------------------------------------EGE 464
              E  ++++    +                                            +
Sbjct: 532 GQPEDMLSRTLPVAYTTGGYGRYVDDILSVATLDPLSNTYNVCALLDNIETVGNTMTAKQ 591

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
           P  + +   +  F   EV +YF R V    +GGN  +  +   G G +GK+    + +  
Sbjct: 592 PLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTVTQTMFEKM 651

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTG 583
            G+  V  +        R P    ANP L RL  G R  ++ E N ++ IN   +K MTG
Sbjct: 652 LGSFAVKMSTTVLT--GRKPCVTSANPELARLRNGVRWAVMEEPNNDETINPGPLKSMTG 709

Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639
            D   AR  +  G   SE    F    + N    ++  D A W R  V+PF+       R
Sbjct: 710 NDSFFARDLWCSGKDTSEIIPMFKLHCICNTLPDIKMADMATWNRVRVVPFEAVFVSGER 769

Query: 640 -------------------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKG---LDVDIP 676
                              D  F  K+          W L  V+ + + +G        P
Sbjct: 770 LEEARRDVPVEQRDCVQVMDKYFVDKIPLLVEP--MAWLL--VQLWGVLQGEPADAYKTP 825

Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
              ++  +E  +  +  + + D               + + +  Y            S  
Sbjct: 826 RKVIQVTKEYEEANNYVRGFADAMMVREPGASVTEMEVYREFKAYMTAYGMATTAGYSIT 885

Query: 737 TVTLNL 742
            V  +L
Sbjct: 886 KVMKDL 891


>gi|107022397|ref|YP_620724.1| hypothetical protein Bcen_0842 [Burkholderia cenocepacia AU 1054]
 gi|116689345|ref|YP_834968.1| P4 family phage/plasmid primase [Burkholderia cenocepacia HI2424]
 gi|105892586|gb|ABF75751.1| Phage-plasmid primase P4-like protein [Burkholderia cenocepacia AU
           1054]
 gi|116647434|gb|ABK08075.1| phage/plasmid primase, P4 family [Burkholderia cenocepacia HI2424]
          Length = 526

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/555 (15%), Positives = 180/555 (32%), Gaps = 65/555 (11%)

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301
            +   +E A         +DE    +              K               IP  
Sbjct: 12  DARPEREAASALEADARMFDELRRAFLAKGNGTNGHAAKPKHPRGKDGRMTAPLDAIPAR 71

Query: 302 LLAS-----RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356
           L          S+     +F+   +G  L        ++  +   + W  T  K      
Sbjct: 72  LSGEIAATVELSEDAVAVVFASAYQGRLL--------FETLRGKWFRWEDTHWKQDEGAR 123

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
                ++  V  +                 + T      +E+ ++        E      
Sbjct: 124 VTREMIRRTVRKMC-----------RGEPRWLTARVVDAIEKLARTDERTCPSEP----- 167

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                 D++   L    G++DL  G       E  +T+ TG     G     +   +   
Sbjct: 168 -----FDANPWLLATPAGVVDLRDGSSRAARPEDMMTRVTGCAPDFGGDCPRWRAFLGAC 222

Query: 477 F-------------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
                           +E++ +  R  G  L G  + +    + G G +GKST + +++ 
Sbjct: 223 IHGFDEYGEPRSAPPGDEMVRFLQRMCGYFLTGSTRFEFVFLLFGGGANGKSTFLRVLRE 282

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G+ +V  A  + +         +    +  + G+R+    E  +N   N+ ++K ++ 
Sbjct: 283 ILGDYFVSVAVETFL----QSAHDQHPTGMAHIEGARLAACGELPDNRSWNSQRVKDISS 338

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDA 641
           G+ ++AR      + +         V N    VR   +A  RR+ +IPF   +    RD+
Sbjct: 339 GEKISARHM-RQDFYDFVPVCKLLFVGNHRPRVRQTGEAEKRRFRIIPFVHKVPENRRDS 397

Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           +    L  +       W L G KA I++G    +P    KA  +     DT+  W  +  
Sbjct: 398 TLEDAL-REEYPAILAWMLDGAKAVIAEGF-ASMPGAVTKATNDYFAENDTFALWAGERL 455

Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
            + ++    +     +Y+ +  +   Y+ + +S+R   + ++  G               
Sbjct: 456 LLHKDYSVPAGVAYANYTRWF-EGGGYEGRPVSSREFKMRMEDMGAT--------HDRDN 506

Query: 762 SKRIIKGLKLKPAFE 776
             R+ +G KL  + +
Sbjct: 507 RGRLYRGAKLDTSGD 521


>gi|62421295|gb|AAX82415.1| D5 family NTPase [Orange-spotted grouper iridovirus]
          Length = 920

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 94/606 (15%), Positives = 182/606 (30%), Gaps = 87/606 (14%)

Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT- 271
           L            + W+ V   ++     +  G  +   +S +    ++    +  W+  
Sbjct: 296 LVDMLPASVAADRNTWLKVGFCLYQVMDAAEDGLRLWMSFSAKCPEKFNATVCHDMWERQ 355

Query: 272 -----FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326
                +    +   AK+ ST     + H + +    L           M+S     +   
Sbjct: 356 MRPNMYTIATLRYLAKQYSTEAYDAWTHSQWMSAERLKLTHVS-LASIMYSALGTHYVCG 414

Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
               + WYK D     +W+     +  S+++        V +       + +  +    +
Sbjct: 415 NIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLASVASGQVPEPDESF 471

Query: 387 FNTDYRRQNVE-ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445
               +R   +   +    S  +              LD++   +   +G+ D +T     
Sbjct: 472 LKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYDFKTRTFRP 531

Query: 446 PTKELYITKSTGTPFV-----------------------------------------EGE 464
              E  ++++    +                                            +
Sbjct: 532 GQPEDMLSRTLPVAYTTGGYGRYVNDILSAATLDPLSNTYNVCALLDNIETVGNTMTAKQ 591

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
           P  + +   +  F   EV +YF R V    +GGN  +  +   G G +GK+    + +  
Sbjct: 592 PLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTVTQTMFEKM 651

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTG 583
            G+  V  +        R P    ANP L RL  G R  ++ E N ++ IN   +K MTG
Sbjct: 652 LGSFAVKMSTTVLT--GRKPCVTSANPELARLRNGVRWAVMEEPNNDETINPGPLKSMTG 709

Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639
            D   AR  +  G   SE    F    + N    ++  D A W R  V+PF+       R
Sbjct: 710 NDSFFARDLWCSGKDTSEIIPMFKLHCICNTLPDIKMADMATWNRVRVVPFEAVFVSGER 769

Query: 640 -------------------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKG---LDVDIP 676
                              D  F  K+          W L  V+ + + +G        P
Sbjct: 770 LEEARRDVPVEQRDCVQVMDKYFVDKIPLLVEP--MAWLL--VQLWGVLQGEPADAYKTP 825

Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
              ++  +E  +  +  + + D               + + +  Y            S  
Sbjct: 826 RKVIQVTKEYEEANNYVRGFADAMMVREPGASVTEMEVYREFKAYMTAYGMATTAGYSIT 885

Query: 737 TVTLNL 742
            V  +L
Sbjct: 886 KVMKDL 891


>gi|19881514|ref|NP_612331.1| ORF109L [Infectious spleen and kidney necrosis virus]
 gi|19773719|gb|AAL98833.1|AF371960_109 ORF109L [infectious spleen and kidney necrosis virus]
          Length = 921

 Score =  274 bits (701), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 95/606 (15%), Positives = 183/606 (30%), Gaps = 87/606 (14%)

Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKW--- 269
           L            + W+ V   ++     +  G  +   +S +    ++    +  W   
Sbjct: 297 LVDMLPASAAADRNTWLKVGFCLYQVMDATEDGLRLWMSFSAKCPEKFNATVCHDMWERQ 356

Query: 270 ---DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326
              +T+    +   AK+ ST     + H + +    L           M+S     +   
Sbjct: 357 MRPNTYTVATLRYLAKQYSTEAYDAWTHSQWMSAERLKLTHVS-LASIMYSALSTHYVCG 415

Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
               + WYK D     +W+     +  S+++        V +       + +  +    +
Sbjct: 416 NIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLAGVASGQVPEPDETF 472

Query: 387 FNTDYRRQNVE-ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445
               +R   +   +    S  +              LD++   +   +G+ D +T     
Sbjct: 473 LKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYDFKTRTFRP 532

Query: 446 PTKELYITKSTGTPFV-----------------------------------------EGE 464
              E  ++++    +                                            +
Sbjct: 533 GQPEDMLSRTLPVAYTVGGYGRYVDDILSAATLDPLSNTYNVCALLDNIETVGNTMTAKQ 592

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
           P  + +   +  F   EV +YF R V    +GGN  +  +   G G +GK+    + +  
Sbjct: 593 PLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTVTQTMFEKM 652

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTG 583
            G+  V  +        R P    ANP L RL  G R  ++ E N ++ IN   +K MTG
Sbjct: 653 LGSFAVKLSTTVLT--GRKPCVTSANPELARLRNGVRWAVMEEPNNDETINPGPLKSMTG 710

Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639
            D   AR  +  G   SE    F    + N    ++  D A W R  V+PF+       R
Sbjct: 711 NDSFFARDLWCSGKETSEIIPMFKLHCICNTLPDIKMADMATWNRVRVVPFEAVFVSGER 770

Query: 640 -------------------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKG---LDVDIP 676
                              D  F  K+          W L  V+ + + +G        P
Sbjct: 771 LEEARRDVPVEQRDCVQVMDKYFVDKIPLLVEP--MAWLL--VQLWGVLQGEPADAYKTP 826

Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
              ++  +E  +  +  + + D               + + +  Y            S  
Sbjct: 827 RKVIQVTKEYEEANNYVRGFADAMMVHEPGASVTEMEVYREFKAYMTAYGMATTAGYSIT 886

Query: 737 TVTLNL 742
            V  +L
Sbjct: 887 KVMKDL 892


>gi|292659055|gb|ADE34443.1| D5 family NTPase [Turbot reddish body iridovirus]
          Length = 920

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 94/606 (15%), Positives = 182/606 (30%), Gaps = 87/606 (14%)

Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT- 271
           L            + W+ V   ++     +  G  +   +S +    ++    +  W+  
Sbjct: 296 LVDMLPASAAADRNTWLKVGFCLYQVMDAAEDGLRLWISFSAKCPEKFNATVCHDMWERQ 355

Query: 272 -----FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326
                +    +   AK+ ST     + H + +    L           M+S     +   
Sbjct: 356 MRPNMYTVATLRYLAKQYSTEAYDAWTHSQWMSAERLKLTHVS-LASIMYSALSTHYVCG 414

Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
               + WYK D     +W+     +  S+++        V +       + +  +    +
Sbjct: 415 NIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLAGVASGQVPEPDESF 471

Query: 387 FNTDYRRQNVE-ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445
               +R   +   +    S  +              LD++   +   +G+ D +T     
Sbjct: 472 LKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYDFKTRTFRP 531

Query: 446 PTKELYITKSTGTPFV-----------------------------------------EGE 464
              E  ++++    +                                            +
Sbjct: 532 GQPEDMLSRTLPVAYTTGGYGSYVDDILSAATLDPLSNTYNVCALLDNIEIVGNTMTAKQ 591

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
           P  + +   +  F   EV +YF R V    +GGN  +  +   G G +GK+    + +  
Sbjct: 592 PLCDVIRFYNTTFPDAEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTVTQTMFEKM 651

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTG 583
            G+  V  +        R P    ANP L RL  G R  ++ E N ++ IN   +K MTG
Sbjct: 652 LGSFAVKMSTTVLT--GRKPCVTSANPELARLRNGVRWAVMEEPNNDETINPGPLKSMTG 709

Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639
            D   AR  +  G   SE    F    + N    ++  D A W R  V+PF+       R
Sbjct: 710 NDSFFARDLWCSGKDTSEIVPMFKLHCICNTLPDIKMADMATWNRVRVVPFEAVFVSGER 769

Query: 640 -------------------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKG---LDVDIP 676
                              D  F  K+          W L  V+ + + +G        P
Sbjct: 770 LEEARRDVPVEQRDCVQVMDKYFVDKIPLLVEP--MAWLL--VQLWGVLQGEPADAYKTP 825

Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
              ++  +E  +  +  + + D               + + +  Y            S  
Sbjct: 826 RKVIQVTKEYEEANNYVRGFADAMMVREPGASVTEMEVYREFKAYMTAYGMATTAGYSIT 885

Query: 737 TVTLNL 742
            V  +L
Sbjct: 886 KVMKDL 891


>gi|29567083|ref|NP_818646.1| gp108 [Mycobacterium phage Barnyard]
 gi|29425808|gb|AAN02162.1| gp108 [Mycobacterium phage Barnyard]
          Length = 916

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 120/894 (13%), Positives = 257/894 (28%), Gaps = 141/894 (15%)

Query: 6   WKEQAKQAIHNGF-KLIPLRLGDKRPQRLG--KWEEQLLSSEKIDKLPA------CGFGF 56
           +++         +   +PL    K P   G         S + I                
Sbjct: 13  FRDSFNAYRKAKWFGTLPLPARKKNPPPTGFTGHAAPFPSPDDIRGWLGEPERKRANIAL 72

Query: 57  VCG--VGEQPLYAFDIDS-----KDEKTANTFKDTFEILHGTPIVRIGQKP----KILIP 105
             G    E  +   D+D      K+++     +         P   I          +  
Sbjct: 73  RLGGVDKEYEVIGIDVDHYVKGDKEKRGGEQLQALENAHGPLPPTWISSARTDGVSGIRY 132

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCG-QYFVAYNIH-PKTKKEYTW--------TTPPH 155
           +R+     +           ++ +  G ++ V +  + P +K +Y W             
Sbjct: 133 YRVP----RGLAFRGQVSKDIECIQKGHRFAVVWPSYNPDSKSDYWWFPPDADLTPEGRK 188

Query: 156 RFKVEDTPLLSEEDV--EYLFKFFQEITVPLVKDKKSIIPSKTWTNN-NNRQYTNREITA 212
            ++V + P+ +E  +  E   KF     +   K +  +  +          ++   E   
Sbjct: 189 AWRVGELPVATELPLLPETWLKFLTRGLMEAGKVEIDMDSTVDDIYAWAYEKFGVDEAVC 248

Query: 213 FLSCFGEE----FYNGSHDEWIPVVMAVHHETRGSSKGKEIAR--------RWSKQGSTY 260
           F      +               +V A  +    +S+G +            +  +    
Sbjct: 249 FRMREKADKHIKLIREEATSHDKIVNAHMNIMLLASEGHKGWDTAIHEIEAAFVDEVQKR 308

Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA---------- 310
           D+ + +          I    K ++   +      + +P   L    +D           
Sbjct: 309 DKRSIDELRGEVFRSRINGLRKVKAKVDARIAIGAEGVPATDLECGSTDDQGVPLLGSEA 368

Query: 311 -------YNKAMFSIYKKGHFL------YTADTKAW---------YKKDKNNVYIWSLT- 347
                  ++           +              W                  IW    
Sbjct: 369 SPPDNNLFDIPRKQSSPASEYRQNDDGNADHFIDIWSDANMGPAVRYVKGLGWIIWHKGD 428

Query: 348 ------LDKITASIMNFLVSMKEDVFDLSEEPEDN---------------------NKNS 380
                   ++       +  M   V D  E   +N                         
Sbjct: 429 HDQRQPHWEVDEDGRGTMRQMFRAVRDKQEGFAENLKVDYTNAMRAFAQQTPGVSAADVR 488

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
           ++   W N      +   N  A +   ++   +  ++  + +D+    L   +G+++L  
Sbjct: 489 EAKSAWSNWHKFATSSGMNRNADNAIAAIATHAGINLDINEIDARPDLLAVANGVVELNP 548

Query: 441 --GQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGYFESEEVMDYFTRCVGMA 493
              +      E Y+T +TG P++  +         + + +  +             +G A
Sbjct: 549 TGARLRDAEPEDYLTLNTGVPWLHPKEIPNTGQKLWQEYLDKFLPDPSYRRDVQIILGHA 608

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           L+G N  ++ I  +G   +GKS ++ +I    G+       +              NP L
Sbjct: 609 LIGSNPHKKLIIFKGAANTGKSVMITMINEVLGDYAKTTNRSLFTYHK-------LNPVL 661

Query: 554 IRLMGSRIVIISETNENDE--INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
            + +  R+V I E + +    +   ++K  TG D + A L   N        F P +V N
Sbjct: 662 AQALPKRVVSIVELSRDKRNPLTVDQMKTATGNDYIEAELKGKNATINRVPMFLPIMVTN 721

Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
               +   D A   R  VI F+    N D + A ++  +       W ++G   Y     
Sbjct: 722 TVPEIEGHDKALRERLRVISFNVVEQNPDDTIAARMRRESRTAVLNWLIEGYNLYCQSER 781

Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE-------- 723
                +      +E     D    +  +C     N+ + S + A+   E+          
Sbjct: 782 KFPENDRMRADTDEFASDMDDISLFAKECLKPAPNMDKPSINWARDQVEWCTSRAAVWTR 841

Query: 724 ------QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
                      ++ ++++   T  LK+ GF     + ++ K+        G+KL
Sbjct: 842 YEQWLFDNHIPEKHKLTSPQFTRRLKELGFNSPQNKVRVNKQ--LGYYWLGVKL 893


>gi|119383107|ref|YP_914163.1| P4 family phage/plasmid primase [Paracoccus denitrificans PD1222]
 gi|119372874|gb|ABL68467.1| phage/plasmid primase, P4 family [Paracoccus denitrificans PD1222]
          Length = 613

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/538 (16%), Positives = 176/538 (32%), Gaps = 75/538 (13%)

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
               +D  N   F I+     L+ +    W+  D +           ++  I      + 
Sbjct: 64  REPLNDLGNARRFVIHFGDDILFVSQV-GWFVWDGSRWRKDDEISRDVSPLIRAQAHKVS 122

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE-------ENSKAKSTA---------- 406
             +    +  + N+++ K      +   RR+ +E       + S  K  A          
Sbjct: 123 TLILQEIDWLQPNDRDRKLIEEDRDLKVRRREIENAPGYAADESLMKELASIEARLRALD 182

Query: 407 ----------------------------QSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438
                                          EA  + +   D +D  +  +    G+L  
Sbjct: 183 AALKSYRNLTTRRLTWAKDAGNSTRIAHMIAEARVMLARAVDDMDQGALDVNTLSGVLRF 242

Query: 439 ETGQ--------------KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484
                              +   +   +TK     +        F   +     + E+  
Sbjct: 243 TRIPNDPEAGMTGMSSVELIPHDRAQLLTKIMPVIYDPDAKCPRFDSFLEQIQPNIEMRR 302

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
           +  R  G+++ G     +     G G +GKS L++L+   FG+    +A    +      
Sbjct: 303 FLQRWFGLSMTGLAVQ-KLAFFHGGGANGKSVLVDLMARMFGDYS-ASARIESLTGKNKK 360

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
               + P L+ L+ +R V  SE  + + +    +K +TGG+ M  R  Y + +      F
Sbjct: 361 SGSDSQPDLMPLIAARFVRTSEPEDGERLQEGLVKALTGGEPMMIRALYSD-FIIFRPIF 419

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLK 661
              I  N    +R  DD  WRR +++ F   I  +     ++L+    +       W ++
Sbjct: 420 KLTISGNHLPEIRGGDDGIWRRVMLVNFPVQIPEKKRIPKEELDEILWQERSGILNWLIQ 479

Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAKSYS 719
           G+  ++  GL    P+    A E  R  +D    ++ D   +   E  +  +  L ++++
Sbjct: 480 GLIDFLDGGLQ--EPDDVTSATEGYRAESDPIGTFLGDATVVTGFEGDFMTARELIEAFN 537

Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGI--KREKIEKEWKSKRIIKGLKLKPAF 775
            + E+       R   RTV+  LK K          +            +G++L   F
Sbjct: 538 FWIEERGET---RWGNRTVSNKLKAKSGTWRHPETNKTFAPGKSGVTGYRGIRLDDTF 592


>gi|319648623|ref|ZP_08002835.1| hypothetical protein HMPREF1012_03874 [Bacillus sp. BT1B_CT2]
 gi|317389271|gb|EFV70086.1| hypothetical protein HMPREF1012_03874 [Bacillus sp. BT1B_CT2]
          Length = 629

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 99/634 (15%), Positives = 208/634 (32%), Gaps = 73/634 (11%)

Query: 5   QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           QW     +        +P  +     +      W       +  +     G GF+    +
Sbjct: 31  QWILWRSEERDGKKTKVPYQIDGSMAQSSNKRTWSTFPTVLKFYNDRDYDGIGFMF-SKD 89

Query: 63  QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
            P    DID   +D   +   +   + +          K  + I  +            +
Sbjct: 90  DPFIGIDIDHCVEDGVLSPFAEKIVQAIGSYTEYSPSGKG-VHIITKGKIPLRGPGTGRK 148

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           + +  L++   G+YF                   +   +      ++E  E   K+ ++ 
Sbjct: 149 NPELGLEVYRHGRYFTFTG---------------NSLGIGPVEERTDELKELFEKYLKDK 193

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238
                        S+  +N +N++   R   +      ++ +NG    D+     MA+ +
Sbjct: 194 KEEQQPSSPPAAASRDMSNLSNKEIWERMFNSKNGKSIQDLFNGHLINDDHSATDMALCN 253

Query: 239 ---------------ETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
                            R S   +E   R  S  G+TY E        +          +
Sbjct: 254 HLAFWTDKDPAKMDSMFRESGLYREKWDRQHSSDGATYGEMTIAAAVYSTHTTISDLMEE 313

Query: 283 KRSTFTSLFYHH--------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334
           ++     ++  H         + I         ++  N      Y   +  Y        
Sbjct: 314 QQEQPYEVYISHPENSKVEDTEEIIDTPPVFHLTELGNAERIVYYHGKNIRYC------- 366

Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
             ++ +  IW+    +   S         + +  L  E +      +  +     D+ ++
Sbjct: 367 --NELDWLIWNGKRWEE-DSKRKIEAITAKTLRALYGEAKATEDKFRKKQL---NDWAKK 420

Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
               N +  +    L+   + S+    LDS        +G++DL+TG+ +   ++L  TK
Sbjct: 421 CERRNIRMNTI---LDVRPMVSVRKQELDSHKYLFNCDNGVIDLKTGELLPHDRDLLFTK 477

Query: 455 STGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRG 508
            +   +        +   +   F  +      E++D+  + +G +L G    Q    + G
Sbjct: 478 ISPIAYQTDADCPNWKTFLESIFIDDQGTPNYEIIDFMQKAIGYSLTGDTTEQVMFFLFG 537

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            G +GKST +N +++ FG+        + I +         N  + RL G+R V   E+ 
Sbjct: 538 NGRNGKSTFINTVQHLFGDYGRQTNSDTFIKKK---NDSAINNDIARLDGARFVSAVESE 594

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
           E  +++ + +KQ+TGG+ M+AR      Y E   
Sbjct: 595 EGQQLSESLVKQITGGEKMSARFL-RQEYFEFTP 627


>gi|167630917|ref|YP_001681416.1| primase, putative [Heliobacterium modesticaldum Ice1]
 gi|167593657|gb|ABZ85405.1| primase, putative [Heliobacterium modesticaldum Ice1]
          Length = 833

 Score =  270 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/480 (16%), Positives = 162/480 (33%), Gaps = 30/480 (6%)

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW-----SLTLDKITASIMNF 358
               +    K++ ++ K     Y    +   +     +  W        L  I   + + 
Sbjct: 371 HFELNSPAVKSLCALQKDLFKEYRESKETKRETMGEELPDWYEPSERGGLRFIPGLLASH 430

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
           +       +         N   K+          R ++ E     S     E      I 
Sbjct: 431 MSKNVSAFYGAESYYIYENGVYKAASDLQAAARVRGHLIERYATMSAINDTEGQWRMLIY 490

Query: 419 S--DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                ++ +   +  ++G+ ++  G     T E Y T      + E     +F+  +   
Sbjct: 491 KPIREINCNPFIINLKNGLYNVLDGSFKAHTPEYYSTVQLKASYNENAECPKFMAFLQSI 550

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYVINAEA 535
               E +       G  L+  NKAQ+   + G   +GKSTL+++ +    G++ V N   
Sbjct: 551 LGDTE-IHLMQEIFGYLLIPVNKAQKSFVLVGAPNAGKSTLLSVAQEILLGSENVSNIPW 609

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +                 L G    I ++       +    K +TG D +TA     N
Sbjct: 610 QSLSD---------RFKTAELFGKLANIFADLPSKSVDDNGIFKALTGEDYITAERKNKN 660

Query: 596 TYSESPASFTPFIVPNKHLF-VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652
            +S            N+      +  + ++RR I+I F+ P+    RD +  +KL     
Sbjct: 661 PFS-FKPYARLLFSCNEIPRNYGDRSEGFYRRLIIIRFENPVPPEKRDPNLIEKL-ASER 718

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
                W L+G+K  I+ G      E      +  +  +++  +++++CC + +       
Sbjct: 719 DGIFMWALEGLKRLIANGYAFSETEGTKAELQRYKVESNSALSFVEECCVLEDEAECVRE 778

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
            L ++Y +Y  +      K +S      +++  G       EK+ +        +G++L 
Sbjct: 779 ELFQAYRDYCLKNG---FKPMSQANFNKDIESLGERVERGLEKVSRRK----TWRGIRLN 831


>gi|82800076|gb|ABB92287.1| putative D5 family NTPase/ATPase [Tiger frog virus]
          Length = 975

 Score =  270 bits (690), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 111/692 (16%), Positives = 212/692 (30%), Gaps = 132/692 (19%)

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
              +  +   L   ++      T T   +R     E+TA L+    +        W+ V 
Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDTTKAHRLKRVTELTAMLTADLAD----DRQTWLNVG 327

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTF 287
             +  +T GS++G ++   +SK+    DE+     W      ++F    +   A+K +  
Sbjct: 328 FCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPG 387

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI---W 344
             L +   K  P   + +    A  K M+  Y          T+ WY+ D          
Sbjct: 388 AYLNWLQVKSTPVNDIGTNV--AMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQG 445

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLS---------------EEPEDNNKNSKSPRFWFNT 389
           +     I+A        +   +  ++               ++ ED+  +      W + 
Sbjct: 446 TDLRSLISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDEDDKEDSATDEDDSNPWDSE 505

Query: 390 DYR----------------RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
             R                 + +E      +  +            D++DS        +
Sbjct: 506 LRRLDSEVLDAMVKRLRNNLKGIEMTGVKNNVLRECAELFYQPEFGDVIDSDPLLFAFAN 565

Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL----------------------D 471
           GI D   G       E  +++     FV   P  +                         
Sbjct: 566 GIYDFREGCLRDGRPEDKLSRRAPVDFVMFGPIPKARHPDNSPVMRPKRMPGESVQDHAR 625

Query: 472 LVSGYFESEEV-------------------------MDYFTRCVGMAL------------ 494
            ++  FE +++                         ++                      
Sbjct: 626 RLAECFEQDDISTSAGTMGKEDVDSFSCNPKDFKGPVNKLLAFFASVFPDEGTRRFFLRN 685

Query: 495 -----LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
                +GGN  +  +   G G +GK+    L +   G   V  +  +     R P AG A
Sbjct: 686 AAATFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKMLGCFAVKMSTQTLT--GRKPSAGSA 743

Query: 550 NPSLIRL-MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTP 606
           NP + RL  G R  ++ E N ++ INA  +K MTG D   AR  Y  G T  E    F  
Sbjct: 744 NPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTFEIKPMFKL 803

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--------------DASFAQKLETKYT 652
            ++ N    +++ D A W R  V+PF+                    D    +KL+    
Sbjct: 804 HVICNALPGIKDADQATWNRVRVVPFESTFVTPGTTAPADAKYVFPADTDITRKLDRLTA 863

Query: 653 LEAKKWFLKGVKA-YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                W+L    A   ++ +    P   ++A    ++  D ++ + ++      +     
Sbjct: 864 P--LAWYLVYCWACIQNERVKYVPPPKVMEATMAYQKEHDLFRQFAEEMLRKDPDSTLTC 921

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
                ++ ++      +   R     V   L+
Sbjct: 922 DDAYTAFRDWTSANSPHGTVRRPKGQVIKCLE 953


>gi|161598668|ref|YP_001569030.1| hypothetical protein pSSVx_p9 [Sulfolobus islandicus]
          Length = 892

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 106/855 (12%), Positives = 251/855 (29%), Gaps = 131/855 (15%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL------PACGFGFVCG 59
           + A+  ++NGF + P+    K+P      K+  + L+ E+  +           +    G
Sbjct: 6   QYAQWFVNNGFAIFPIDKETKKPVISEWQKYSREKLTEEEKAEFLKMIGEQNYNYAIPGG 65

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF---------RMNK 110
              + L   D +          +   + L    +  +      L  F         + N 
Sbjct: 66  Q--KGLVVLDFEDLQLLKQWISEPALDDLCKQTLC-VQTPHGGLHIFVISYEIPEHKFNP 122

Query: 111 EGIKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLL 165
                 K     Q +   +LG G             P+  +++T     +  ++      
Sbjct: 123 AFTLNGKGIVDLQSYNSYVLGVGSCINHKYCESPKCPRRGQDHTTCYTLYNNELVPIVE- 181

Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
           +   ++   K+  EI        +    +K W           E         +      
Sbjct: 182 TVRGLKEFLKWLDEIAKQKKLGIELSPSAKEWVYGKTEAVEEEEFKKLKEDMAKYNKFKG 241

Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285
                          + + + KE +++W    +T      + K  ++    I  +     
Sbjct: 242 KTVEAVREEVCKEMKKSNEELKEKSQKWKAIYNTAIPVICDSK--SYTQLGIDRSRGDWR 299

Query: 286 TFTSLFYHHGKLI---------PKGLLASRFSDAYNKAMFSIYK---------------- 320
            F +LF H    +            + + +++      +   +K                
Sbjct: 300 VFRALFTHGVADLDVVDKLLPADSKVYSPKWNRYMIHTIAKAWKYSKPALKFQKEAQGKN 359

Query: 321 ------------KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM-NFLVSMKEDVF 367
                           L     KA+Y+   +N  I    +      I   F   +++ + 
Sbjct: 360 EKEAKKIARKIITEAVLERYKIKAFYQVTGHNQAIVGTFVWDKKKGIYVPFDKGLRKVIR 419

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            L+E  +  +++    R       +R   +   + K    +        +          
Sbjct: 420 KLAESLQIKSRDKTLAR-----LSKRDVDDIVDEIKDLKLTPIPAEPLRV---------- 464

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------------------SQ 467
               ++  ++      +   K          P+                           
Sbjct: 465 --AFKNVTIEWAIKANILHRKTPKQYSFYYLPWTVNYEEFNKMKSLSIQEIEELAKRLCP 522

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           + L+    +   + +     + +G  L  G K ++   + G G +GKS+ +NL+K   G+
Sbjct: 523 KSLETFKSWVGVKWI--LLFQIIGYTLYPGIKFRKAFMLVGEGKNGKSSFINLVKKVLGD 580

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
             V  +              +    +  L       ++E+ +    +  ++K++TG D +
Sbjct: 581 YAVSISPRELFD-------PRNRFIVGNLYHKLANAVAESKDYSIDDMDRVKRLTGDDWI 633

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPIANRDASFAQK 646
           TA + + +      +     I  N    VR+  D A+W R++++ F     + D+ F + 
Sbjct: 634 TADVKFKDP-ITFKSVAKLIIASNNMPHVRDTNDRAFWHRWVIVEFPHQFKDNDSWFDKT 692

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE- 705
              +         +  +    ++G  VD  +   +         D+   +I    + G  
Sbjct: 693 FTEEEINGIITTAIASISRAFAQG-HVDFEQSEEEVMGIWLSHIDSVYNFIKTYVEKGTI 751

Query: 706 -------NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
                  +LW     L   Y  Y  ++     + +  ++ +  L++            +K
Sbjct: 752 RLDPKNGDLWVPKDQLYNLYQNYCIEQG---FRGVGRKSFSRKLRE-----YFGITVSQK 803

Query: 759 EWKSKRIIKGLKLKP 773
             +  R   G+ + P
Sbjct: 804 GAERDRAFVGIAVDP 818


>gi|84684071|ref|ZP_01011973.1| hypothetical protein 1099457000262_RB2654_16521 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667824|gb|EAQ14292.1| hypothetical protein RB2654_16521 [Rhodobacterales bacterium
           HTCC2654]
          Length = 602

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 88/546 (16%), Positives = 179/546 (32%), Gaps = 87/546 (15%)

Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
              +D  N   F I+     ++           +   + W+  + +     +      ++
Sbjct: 45  QSENDYGNGQRFIIHFGDDLMFVP---------RVGWFTWTGAVWQADPDELEVRRRAQQ 95

Query: 365 ---------------------------------DVFDLSEEPEDNNKNSKSPRFWFNTDY 391
                                            ++  +  +   +++ ++        D 
Sbjct: 96  IGPLILEELDYLRLPQVQMDLIAEEDVLVLRRVEIEAIPAKDRSSDQATELTELRLKLDR 155

Query: 392 RRQNVEENSKAKSTA---------------QSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
             +  ++ S+ ++                    E+ +  ++  + LD++   +    G++
Sbjct: 156 ISEAKKKLSERRAARRRKAVQAGNSGPIDHMVAESQTSLAVPLEQLDAAPFDVNCLSGVV 215

Query: 437 D---------------LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
                                 V   +E  +TK     +     +  F   ++      +
Sbjct: 216 QSRVTEEPTDDGRKIRYAQVDLVPHAREQRLTKIMPVEYDPDATAPGFEKFLTRVLPDPD 275

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           +  +  R  G+A+         + + G G +GKS L+++I    G+        S    N
Sbjct: 276 IRAFLQRWFGVAMTAEPLQN-MVFLFGSGANGKSVLVDIISRVLGDYGATARIESLTGTN 334

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
           R    G A P LI L+GSR V  SE +E   +    IK+ TGG+ +  R  + + +    
Sbjct: 335 R-RGGGDATPDLIPLIGSRHVRTSEPDEGMRLQEGLIKEWTGGEPILVRALHSD-FIVVL 392

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659
             F   +  N    +R  DD  WRR++++PF + I    RD     KL  +      +W 
Sbjct: 393 PKFKLTMSGNHKPDIRGTDDGIWRRFLMVPFTEQIPVAERDPHLVDKLW-EERDGIFQWL 451

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAKS 717
           + G+  +   GL    P+  + A  E R   D    ++  C  +         S  L ++
Sbjct: 452 IVGLNQFQEIGLSP--PDAVVAATAEFRAEQDPVGDFLATCTVVTGRPEDTVTSSRLVEA 509

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR--EKIEKEWKSKRIIKGLKLKPAF 775
           ++ +  +      K     TV+  L  K          +   K   S     G++L   F
Sbjct: 510 FTFWLMKNGQGAWKP---TTVSRRLSDKAERWRHPNGGQSFTKRKASTVFYDGIRLTEVF 566

Query: 776 ESVDDN 781
               DN
Sbjct: 567 ARDLDN 572


>gi|228861234|ref|YP_002854256.1| putative D5 family NTPase/ATPase [Soft-shelled turtle iridovirus]
 gi|194307514|gb|ACF42244.1| putative D5 family NTPase/ATPase [Soft-shelled turtle iridovirus]
          Length = 975

 Score =  270 bits (689), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 109/692 (15%), Positives = 205/692 (29%), Gaps = 132/692 (19%)

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
              +  +   L   ++      T     +R     ++TA L+    +        W+ V 
Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDATKAHRLKRVTDLTAMLTADLAD----DRQTWLNVG 327

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTF 287
             +  +T GS++G ++   +SK+    DE+     W      ++F    +   A+K +  
Sbjct: 328 FCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPG 387

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI---W 344
             L +   K  P   + +    A  K M+  Y          T+ WY+ D          
Sbjct: 388 AYLNWLQVKSTPVNDIGTNV--AMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQG 445

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSE---------------------------EPEDNN 377
           +     I+A        +   +  ++                             P D+ 
Sbjct: 446 TDLRSLISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDEDDEEESATDEDDSNPWDSE 505

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKA----KSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
                         R +N  +  +      +  +            D++DS        +
Sbjct: 506 LRRLDSEVLDAMVKRLRNNLKGIEMTGVKNNVLRECAELFYQPEFGDVIDSDPLLFAFAN 565

Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEG------------------------------ 463
           GI D   G       E  +++     FV                                
Sbjct: 566 GIYDFREGCLRDGRPEDKLSRRAPVDFVMFGPIPKARHPDNSPVMRPKRMPGESVQDHAR 625

Query: 464 --EPSQEFLDLVSG--YFESEEVMDY-------------FTRCVGMAL------------ 494
                 E  D+++       E+V  +                                  
Sbjct: 626 RLAECFEQDDVLASAGTMGKEDVESFSCNPKDFKGPVTKLLAFFASVFPDEGTRRFFLRN 685

Query: 495 -----LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
                +GGN  +  +   G G +GK+    L +   G   V  +  +     R P AG A
Sbjct: 686 AAATFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKMLGCFAVKMSTQTLT--GRKPSAGSA 743

Query: 550 NPSLIRL-MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTP 606
           NP + RL  G R  ++ E N ++ INA  +K MTG D   AR  Y  G T  E    F  
Sbjct: 744 NPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTFEIKPMFKL 803

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--------------DASFAQKLETKYT 652
            ++ N    +++ D A W R  V+PF+                    D    +KL+    
Sbjct: 804 HVICNALPGIKDADQATWNRVRVVPFESTFVTPGTTAPADAKYVFPADTDITRKLDRLTA 863

Query: 653 LEAKKWFLKGVKA-YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                W+L    A   ++ +    P   ++A    ++  D ++ + ++      +     
Sbjct: 864 P--LAWYLVYCWACIQNERVKYVPPPKVMEATMAYQKEHDLFRQFAEEMLRKDPDSTLTC 921

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
                ++ ++      +   R     V   L+
Sbjct: 922 DDAYTAFRDWTSANSPHGTVRRPKGQVVKCLE 953


>gi|219855955|ref|YP_002473077.1| hypothetical protein CKR_2612 [Clostridium kluyveri NBRC 12016]
 gi|219569679|dbj|BAH07663.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 787

 Score =  269 bits (687), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 132/770 (17%), Positives = 256/770 (33%), Gaps = 62/770 (8%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           W     ++       IP ++  K         W       E  + +     G      + 
Sbjct: 40  WVLWKLESRKGKTTKIPYQIDGKMASSTNPDTWNTFSKVVETYNHMGKYS-GIGFMFQDS 98

Query: 64  PLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
            +   DID   KD + +       + L     +    K   ++ +      +K+      
Sbjct: 99  GIVGIDIDDCVKDGEISEKAAYIIDTLDSYTELSQSGKGVHVLAYGYIPRAVKR------ 152

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
               +++   G+YF                      K+E+     ++ ++ ++  +Q+  
Sbjct: 153 ---EIEMYNTGRYFALTG------------DSLAGNKIEN----RQKQLDAIYNIYQKDD 193

Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
             L +              N  +  ++   +      +  Y+GS          +++   
Sbjct: 194 EALKEQLPVKTLQSKNIKFNINELLDKAFASKNGFKIKALYDGSWQN-------LYNSQS 246

Query: 242 GSSKGKEIARRWSKQGSTYDEEN-------FNYKWDT---FDFEEIGDTAKKRSTFTSLF 291
            + +       +      Y  +           KWD                R T+    
Sbjct: 247 EADQALANYLAFWLNKDPYLMDEAFRRSGLCREKWDRDDYMTRTINKAIRDCRETYQEYM 306

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
               K     +    F+D      F    K    Y  D K +Y         W       
Sbjct: 307 IRTQKETNDFIKNYDFTDLGISKDFKNKYKDILKYAVDIKYYYY--------WDGKKWVR 358

Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
               +       + V ++  +           +   +    R  ++         +  +A
Sbjct: 359 DDDGLPIKTLSIKFVENMVVKINQYISKLDDEKEIADMRKVRNKLKSARTLDVIYKQYKA 418

Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
                I S ++DS  R++   +GI+D+ TG+ +   K+L+I+K     +V G+ +  F  
Sbjct: 419 FEDTHINSKIMDSDVRYINCNNGIVDITTGKILPHDKDLHISKIAEVNYVPGKINSLFKA 478

Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            +   F    E ++ F   +G  L G    + F  I GV  +GK+ +  LI   FG+ YV
Sbjct: 479 SIDRLFNGDNEEIEAFEILLGYMLSGRANQKIFPIIHGVRNTGKTQIFELILNTFGSDYV 538

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
            + + S +M+     +G ANP L  L G R++I SET+++D ++   +K++ GGD + AR
Sbjct: 539 KSIDKSLLMKAWNKNSG-ANPELAELQGVRLLICSETSDSDYLDTDFMKKIVGGDTIKAR 597

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK-LET 649
             Y     E   +F P I  NK       DDA   R IVI     +   D     K    
Sbjct: 598 PLYK-PPIEFTPNFVPVIFTNKKPSFDGNDDALVIRIIVIELLYSLEKNDIDPDFKRKVL 656

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
           +       + +  +  +   G  +  P+    +KEE  +  + Y  + D           
Sbjct: 657 EDKEGLFSYIISCIVKFTKTG-KLKFPQRWADSKEEYAKENNPYGRFKDIYFSDLPGHNL 715

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
            +  +   + E+   E  Y +   S + +T   K  G   G+ +  +  +
Sbjct: 716 PAKEVYPIFEEWYLNE--YSKNVPSRKKITQGFKALGIKTGMTKGYVTYK 763


>gi|153955563|ref|YP_001396328.1| hypothetical protein CKL_2948 [Clostridium kluyveri DSM 555]
 gi|146348421|gb|EDK34957.1| Phage-related protein [Clostridium kluyveri DSM 555]
          Length = 768

 Score =  269 bits (686), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 132/770 (17%), Positives = 256/770 (33%), Gaps = 62/770 (8%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           W     ++       IP ++  K         W       E  + +     G      + 
Sbjct: 21  WVLWKLESRKGKTTKIPYQIDGKMASSTNPDTWNTFSKVVETYNHMGKYS-GIGFMFQDS 79

Query: 64  PLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
            +   DID   KD + +       + L     +    K   ++ +      +K+      
Sbjct: 80  GIVGIDIDDCVKDGEISEKAAYIIDTLDSYTELSQSGKGVHVLAYGYIPRAVKR------ 133

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
               +++   G+YF                      K+E+     ++ ++ ++  +Q+  
Sbjct: 134 ---EIEMYNTGRYFALTG------------DSLAGNKIEN----RQKQLDAIYNIYQKDD 174

Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
             L +              N  +  ++   +      +  Y+GS          +++   
Sbjct: 175 EALKEQLPVKTLQSKNIKFNINELLDKAFASKNGFKIKALYDGSWQN-------LYNSQS 227

Query: 242 GSSKGKEIARRWSKQGSTYDEEN-------FNYKWDT---FDFEEIGDTAKKRSTFTSLF 291
            + +       +      Y  +           KWD                R T+    
Sbjct: 228 EADQALANYLAFWLNKDPYLMDEAFRRSGLCREKWDRDDYMTRTINKAIRDCRETYQEYM 287

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
               K     +    F+D      F    K    Y  D K +Y         W       
Sbjct: 288 IRTQKETNDFIKNYDFTDLGISKDFKNKYKDILKYAVDIKYYYY--------WDGKKWVR 339

Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
               +       + V ++  +           +   +    R  ++         +  +A
Sbjct: 340 DDDGLPIKTLSIKFVENMVVKINQYISKLDDEKEIADMRKVRNKLKSARTLDVIYKQYKA 399

Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
                I S ++DS  R++   +GI+D+ TG+ +   K+L+I+K     +V G+ +  F  
Sbjct: 400 FEDTHINSKIMDSDVRYINCNNGIVDITTGKILPHDKDLHISKIAEVNYVPGKINSLFKA 459

Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            +   F    E ++ F   +G  L G    + F  I GV  +GK+ +  LI   FG+ YV
Sbjct: 460 SIDRLFNGDNEEIEAFEILLGYMLSGRANQKIFPIIHGVRNTGKTQIFELILNTFGSDYV 519

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
            + + S +M+     +G ANP L  L G R++I SET+++D ++   +K++ GGD + AR
Sbjct: 520 KSIDKSLLMKAWNKNSG-ANPELAELQGVRLLICSETSDSDYLDTDFMKKIVGGDTIKAR 578

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK-LET 649
             Y     E   +F P I  NK       DDA   R IVI     +   D     K    
Sbjct: 579 PLYK-PPIEFTPNFVPVIFTNKKPSFDGNDDALVIRIIVIELLYSLEKNDIDPDFKRKVL 637

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
           +       + +  +  +   G  +  P+    +KEE  +  + Y  + D           
Sbjct: 638 EDKEGLFSYIISCIVKFTKTG-KLKFPQRWADSKEEYAKENNPYGRFKDIYFSDLPGHNL 696

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
            +  +   + E+   E  Y +   S + +T   K  G   G+ +  +  +
Sbjct: 697 PAKEVYPIFEEWYLNE--YSKNVPSRKKITQGFKALGIKTGMTKGYVTYK 744


>gi|10954590|ref|NP_052184.1| helicase-like protein [Sulfolobus islandicus]
 gi|1930088|gb|AAB51531.1| helicase-like protein [Sulfolobus islandicus]
          Length = 979

 Score =  266 bits (680), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 123/866 (14%), Positives = 248/866 (28%), Gaps = 140/866 (16%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCG 59
           K  A+  I  GF + P+    K+P      K+  + L+ E+  +          +    G
Sbjct: 10  KRFAEWFIEQGFAIFPIDPQSKKPVISNWQKYSHEPLTDEEKKRFLEQIEKGYNYAVPGG 69

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF---------RMNK 110
              Q L   D +SK+       K   + L    +  +      +  +         + N 
Sbjct: 70  Q--QNLVILDFESKELLEKWISKSALDELCRKTLC-VNTPHGGIHVYVQADNIPEHKFNP 126

Query: 111 EGIKKKKTTESTQGHLD-ILGCGQYFVAYNIHPKTKKEYTWTTP----PHRFKVEDTPLL 165
                 K     Q +   +LG G           + K   W        +     +   +
Sbjct: 127 AFTLNGKGIADLQSYNSYVLGVGSCINHKFC--DSDKC-KWRGQNHTTCYSLYNNNELKI 183

Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPS--KTWTNNNNRQYTNREITAFLSCFGEEFYN 223
              D++ L KF  E    L  +  S   +  +      + +    ++   LS F +    
Sbjct: 184 GRADLKGLLKFLAEKGKELGIELSSNARAWLEGEKEETDVEKDLEKLKKELSRFNKFKGK 243

Query: 224 GSHDEWIPVVMAVHHE-----TRGSSKGKEIARRWSKQGSTY------------------ 260
                   V  ++        +  +      A +   QG +Y                  
Sbjct: 244 TIEAIRSEVCQSIKKSLENVKSDKAKTMLNTAFQVVCQGKSYGEIQLDRSRGDWHVLKVL 303

Query: 261 -----------------DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
                            D + F  KWD +    +     +   F  +  +      K L 
Sbjct: 304 LSHGVTDVEVLKQLLPQDSKVFAPKWDRYFLHTLMKAWNEVKPFLQIIKNAKNKKTKEL- 362

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
               ++  ++ +   Y             + +K  N   I  +        I   +    
Sbjct: 363 KQELAEVLSQYIIRKYH---------IVTFIQKHSNGESIIGIFRWNRKKGIYEPIDETL 413

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           + +          ++  +    +  ++  +  +    + +      +     ++T    D
Sbjct: 414 KKI--------IRHEIMRVIETFPKSEDEKSPMFYEVRNELVKLVYDEIRDLTLTEYDDD 465

Query: 424 SSSRFLGEQDGILDLETG-----------------QKVKPTKELYITKSTGTPFVEGEP- 465
           ++   +  ++  L+  +                    V     + +  +T     E E  
Sbjct: 466 NTPLRIAFENCTLEWTSDKFKLIPADKRTEEHYAFHYVPHKIRVEVFNNTPYQVPELEEL 525

Query: 466 ----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
                 + L+    +   + V       +G  L    K +    + G   SGKST + L+
Sbjct: 526 ARKLCPKSLNAFKQWVGEKWV--TLFEIIGYTLYPATKFKLAFMLLGPRDSGKSTFLQLL 583

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
           K   G Q  ++         R             L    + + +ET E    +  + K +
Sbjct: 584 KRILGKQNTVSIRL------RELFDPNNRFVAGFLFHKLVNLTAETKEYTIEDIDRFKTL 637

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPIANRD 640
           TGGD +T+ + +              I  NK   +R+  D A+WRR+++I F     N D
Sbjct: 638 TGGDQITSDVKFKGP-ITFTPYAKLIIASNKLPDIRDKNDTAFWRRWLIIEFPNQFPNDD 696

Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI--PEVCLKAKEEERQGTDTYQAWID 698
             F Q    +         +      +S+G       PE             D+  +++ 
Sbjct: 697 NWFRQTFTEEEIEGILTVSILAFARVMSRGQFDYQQTPEEVRDL---WLYNIDSVWSFVR 753

Query: 699 DC-----CDIGE---NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
                    +     +LW     L K Y +Y           +S +T    L  K F   
Sbjct: 754 TYEKKGFITVDPRNADLWVPRIELYKLYKDYCMDNGFPG---VSLKTFANKL-NKYFGIT 809

Query: 751 IKREKIEKEWKSK----RIIKGLKLK 772
             ++   K+   K    R   G+ + 
Sbjct: 810 SMKKYFGKDPNGKEIRRRCFVGITIN 835


>gi|153810987|ref|ZP_01963655.1| hypothetical protein RUMOBE_01378 [Ruminococcus obeum ATCC 29174]
 gi|149832875|gb|EDM87958.1| hypothetical protein RUMOBE_01378 [Ruminococcus obeum ATCC 29174]
          Length = 385

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/388 (18%), Positives = 144/388 (37%), Gaps = 17/388 (4%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTG 457
           +         +A  +    +  LD     L  ++ +LDL   Q   ++   +L ++K   
Sbjct: 3   NYRSRNVMVTDAKDLNFFDNTELDKDDFLLNCKNCVLDLSGDQPKELEHKADLLLSKICN 62

Query: 458 TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKS 515
             +        +   V+         ++Y  +  G  L G    + F    G    +GKS
Sbjct: 63  ANYNPAATCTLWEKTVNEIMQGDSSKIEYLQKMSGRFLTGDTSEEEFYIFFGATTRNGKS 122

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
           T+  L+ Y  G+     +  S        ++  A+P + +L G+R V+ SE       ++
Sbjct: 123 TITELLLYLLGDYATTISPESL-AIKVNKDSRTASPDIAKLAGTRFVVASEPPRRMLFDS 181

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           + +K +TG D ++AR  + N + +    F   +  N    + +       R  V+PF++ 
Sbjct: 182 SLVKTLTGRDTVSARFLHENEF-QFKPKFKLILNSNYLPVISDKTVFSSNRVKVVPFERH 240

Query: 636 IANRDASFAQKLET-KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
              ++ +   K +  +       W ++G+  Y  +GL+   P     A  E  + +D   
Sbjct: 241 FTEKEQNKHLKEQLQQEIDGILNWCIQGLSLYRKEGLEP--PTAVQIATHEYSEDSDKIG 298

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            +I +C +  +     +  + + YS++          R S       LK K  +    + 
Sbjct: 299 KFISECLEKSDQNL-AAKDVYEKYSQWCNDCGLGVDGRTS---FYEELKTKNLLS---KT 351

Query: 755 KIEKEWKSKRIIKGLKLKPA-FESVDDN 781
                   K +IKG       F  VD N
Sbjct: 352 GTVTGKTVKNVIKGYSFVDETFHPVDGN 379


>gi|45686089|ref|YP_003852.1| D5 family NTPase [Ambystoma tigrinum virus]
 gi|37722513|gb|AAP33258.1| D5 family NTPase [Ambystoma tigrinum stebbensi virus]
          Length = 975

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 110/692 (15%), Positives = 207/692 (29%), Gaps = 132/692 (19%)

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
              +  +   L   ++            +R     E+TA L+    +        W+ V 
Sbjct: 272 LADYSAVMAKLDVARQRKPAWNIDATKAHRLKRVTELTAMLTADLAD----DRQTWLNVG 327

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTF 287
             +  +T GS++G ++   +SK+    DE+     W      ++F    +   A+K +  
Sbjct: 328 FCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPG 387

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI---W 344
             L +   K  P   + +    A  K M+  Y          T+ WY+ D          
Sbjct: 388 AYLNWLQVKSTPVNDIGTNV--AMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQG 445

Query: 345 SLTLDKITASIMNFLVSMKEDV-----------FDLSEEPEDNNKNSKSPR--------- 384
           +     I+A        +   +            D   E ED+ +NS +           
Sbjct: 446 TDLRSLISAEGGPLRRLLTRQLDAVTAAKARGGRDSGNEDEDDEENSATDEDDSNPWDSE 505

Query: 385 -----------FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
                               + +E      +  +            D++DS        +
Sbjct: 506 LRRLDSEVLDAMVKRLRNNLKGIEMTGIKNNVLRECAELFYQPEFGDVIDSDPLLFAFAN 565

Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL----------------------D 471
           G+ D   G       E  +++     FV   P  +                         
Sbjct: 566 GVYDFREGCLRDGRPEDKLSRRAPVDFVMFGPIPKARHPDNSPVMRPKRMPGESVQDHAR 625

Query: 472 LVSGYFESEEV-------------------------MDYFTRCVGMAL------------ 494
            ++  FE ++V                         +                       
Sbjct: 626 RLAECFEQDDVSASAGTMGKEDVESFSCNPEDFKGPVAKLLAFFASVFPDEGTRRFFLRN 685

Query: 495 -----LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
                +GGN  +  +   G G +GK+    L +   G   V  +  +   +   P AG A
Sbjct: 686 AAAIFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKMLGCFAVKMSTQTLTGKK--PSAGSA 743

Query: 550 NPSLIRL-MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTP 606
           NP + RL  G R  ++ E N ++ INA  +K MTG D   AR  Y  G T  E    F  
Sbjct: 744 NPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTFEIKPMFKL 803

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--------------DASFAQKLETKYT 652
            ++ N    +++ D A W R  V+PF+                    D    +KL+    
Sbjct: 804 HVICNALPGIKDADQATWNRVRVVPFESTFVTPGTTAPADSKYVFPADTDITRKLDRLTA 863

Query: 653 LEAKKWFLKGVKA-YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                W+L    A   ++ +    P   ++A    ++  D ++ + ++      +     
Sbjct: 864 P--LAWYLVYCWACIQNERVKYVPPPKVMEATMAYQKEHDLFRQFTEEMLRKDLDSTLTC 921

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
                ++ ++      +   R     V   L+
Sbjct: 922 DDAYTAFRDWTSANSPHGTVRRPKGQVVKCLE 953


>gi|95928523|ref|ZP_01311270.1| Phage/plasmid primase P4-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135313|gb|EAT16965.1| Phage/plasmid primase P4-like [Desulfuromonas acetoxidans DSM 684]
          Length = 498

 Score =  264 bits (675), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 172/481 (35%), Gaps = 44/481 (9%)

Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASI 355
           +  P+    +  +D  N      Y      +    K W++        W+    +   + 
Sbjct: 20  EKGPELDCDTLQTDYGNALRIKFYFDRLIFFHHAQKNWFR--------WTGCHWQRDTNQ 71

Query: 356 ---MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
              +  + ++++ +           ++ +     F      +     SK ++        
Sbjct: 72  CLTLQIVEAIRKILTVEIPWLRYLKEDKQRDDIAFPDTSFVEKSLSRSKIRAAGLLAADL 131

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
                    LD+    L  Q+G +DL++G+     +E Y+TK     F +      F+  
Sbjct: 132 MPLP---AHLDAHKELLNCQNGTVDLKSGELKDHDREDYLTKIAPFAFEKDAQCPRFIAF 188

Query: 473 VSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYV 530
           +   F    E + +  +  G +L G    ++   + G  G +GK+ L N+ +   G  + 
Sbjct: 189 LERAFPDNPEGIAFIQKIFGYSLTGDVSEKKIFILWGAAGNNGKTLLFNVFRGILGQCFC 248

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
           +   +  ++  R          + +L+G R V  SET+   + N A IK +TGGD +TAR
Sbjct: 249 VQLASESLVSGR---INAIRSDIAKLIGYRFVTASETDRRYKFNEALIKLLTGGDALTAR 305

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLE 648
             +   + E       FI  N        D A   R  +IPF   I    +D    QKL 
Sbjct: 306 HPHEREF-EFTPELKLFIGTNAKPEFTLSDQAMLNRVCIIPFHVSIPPEEQDKQLTQKLI 364

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD---------TYQAWIDD 699
            +       W ++G + +  +GL  +                D         T   +I  
Sbjct: 365 NEEGEGILAWAIEGARLWAKEGLGENP------------FDQDSASVITPVITIDQFIKA 412

Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
           CC       E++H L  +++ Y+E   + +   ++ +  +  +K  G      R+   +E
Sbjct: 413 CCTQNPGDREKTHDLMTAFNLYKEHTGD-ESPAVNVKAFSNMIKGFGTEAKHHRDGNYRE 471

Query: 760 W 760
            
Sbjct: 472 H 472


>gi|260459539|ref|ZP_05807793.1| phage/plasmid primase, P4 family [Mesorhizobium opportunistum
           WSM2075]
 gi|259034341|gb|EEW35598.1| phage/plasmid primase, P4 family [Mesorhizobium opportunistum
           WSM2075]
          Length = 329

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 73/318 (22%), Positives = 132/318 (41%), Gaps = 11/318 (3%)

Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
             EF   +        +  +  R  G  L G    Q  +   G G +GKST ++L+ +  
Sbjct: 1   MPEFKKFLIKVQPDPAIRAFLKRFCGYLLTGLTIEQVMLFFYGAGRNGKSTFVDLLCFIM 60

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
           G+  V          +     G+A P L RL G+R+V  SE     ++  A IK +TGG+
Sbjct: 61  GDYAVT-LSIDSFSGDNKRGGGEATPDLARLPGARLVAASEPEAGVKLKDALIKTLTGGE 119

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASF 643
            +  R  + + + E    F   +  N    + +  D  WRR +++P+   IA  + D + 
Sbjct: 120 KIPVRRLHKD-FFEVDPHFKIVLSGNHKPRIDDDSDGIWRRLLLVPWTVQIAEGDTDRAL 178

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
            +KL          W ++G   Y++ GL  +IPE    A  E RQ +D    +I   C +
Sbjct: 179 PRKL-RAEAGAVFAWMVEGAVDYLNHGL--EIPEGVRAASNEYRQESDAIGTFIRMACHV 235

Query: 704 --GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG--GIKREKIEKE 759
               +  E+   L  ++ ++   E  +   R +         ++ F G  G  R+   + 
Sbjct: 236 TGNPDDKEKPIDLYHAFEKFAASEGVFAFNRSTFEKRFAKSAERSFEGPDGQMRQFQRQR 295

Query: 760 WKSKRIIKGLKLKPAFES 777
              +   +G+ ++P ++S
Sbjct: 296 SHGETFYRGIGIRPEWQS 313


>gi|169342282|ref|ZP_02863361.1| D5 N like family [Clostridium perfringens C str. JGS1495]
 gi|169299663|gb|EDS81721.1| D5 N like family [Clostridium perfringens C str. JGS1495]
          Length = 463

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 70/471 (14%), Positives = 161/471 (34%), Gaps = 18/471 (3%)

Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377
           + +    +   +    + K    V  ++        +    ++  K+  +  ++     N
Sbjct: 1   MLEDEKIIECEEMGIEFSKKTGKVKSFNPNKFATFTAKKLQIIYNKDSFYVYNDGIW--N 58

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
           K S    F       +   +     K+  + + A        + L+S+ R++  ++G+ D
Sbjct: 59  KISDMYLFQKLRGKLQTYSDNIWSLKNEKEYIGALKRIVFFEEELNSNKRYINLRNGMFD 118

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLG 496
           L T   ++   E Y +      + E      F+  ++  F   EE ++     VG  L  
Sbjct: 119 LNTYSLMEHRPEFYSSIRIPVDYNEEAECPNFIRFLNQCFNGDEEAINLAQEWVGYILTA 178

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
             +AQ+ + + G+G +GK   +++I    G + + +   +++ +           S + +
Sbjct: 179 ETRAQKALILYGLGKNGKGIFIDIISELIGQENISSIPMNELSR---------PFSRVCI 229

Query: 557 MGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
            G    I +E       +N    K + G D +TA         +   +       N    
Sbjct: 230 YGKLANISNENEFNGASLNTQYFKAIVGEDIITAEQKN-QPVIQFKPTARMVFSTNNLPH 288

Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASF-AQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
             +   A+ RR  ++ F   +   D  F  ++   +       W L G++          
Sbjct: 289 TNDGGYAFMRRLCMLHFKNVVKEEDRDFYLREKLKEELNGIFNWALVGLRRLKENNFRFS 348

Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSLAKSYSEYREQELNYDRKRI 733
                 K  ++     +    + + C +    +  E++  +  +Y  +        + +I
Sbjct: 349 ECNSSNKLLKQYEMELNPMILFFEQCVEKEHSDHREDNRIIYNTYKSWARANGMEGQAKI 408

Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
           S +          +   +  E   K+  S R   G+K+   F    D+S I
Sbjct: 409 SVQKFWRKFDA--YAKSLGYECESKKSNSFRYHTGVKIVGCFRISLDDSRI 457


>gi|51244031|ref|YP_063915.1| hypothetical protein DP0179 [Desulfotalea psychrophila LSv54]
 gi|50875068|emb|CAG34908.1| hypothetical protein, probably cold-shock inducible [Desulfotalea
           psychrophila LSv54]
          Length = 652

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 130/361 (36%), Gaps = 31/361 (8%)

Query: 425 SSRFLGEQDGILDLETG----QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
               +   +G L L       +     K  Y T      F     +  F   ++  FE++
Sbjct: 302 DPNVINCLNGELHLNHKTGSWEPKSHDKLAYRTSQIPVEFDPTATAPRFKQFLNEIFETD 361

Query: 481 E----VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
           E             G  ++     + F+ + G G +GKS  ++L++   G +  +  + S
Sbjct: 362 EDSQDKTRALLEMCGYTMVAHCSYELFVILIGTGANGKSVFLSLLEAIVGPKNTVGVQPS 421

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
                              +      I++E  + + I  A++K +  G+  T    + + 
Sbjct: 422 QFDN---------RFQRGHMRHKLANIVTEIKQGEVIADAELKGIVSGEPSTVENKFKDP 472

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA-QKLETKYTLEA 655
           +       T +   N     R+  +A +RR +++ F++  ++ + +   +          
Sbjct: 473 F-TMRPHVTCWFATNHMPHTRDFSEALFRRALILKFNRVFSDEEKNPKLKDELFAELPGI 531

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
               L      +  G     P+   +AKEE R   D  Q +++DCC+       ES +L 
Sbjct: 532 LNLALHAYANAVLNG--FTKPDSSEQAKEEWRLEADQVQQFVEDCCEKSPYEEIESSTLF 589

Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
           ++Y  + E      RK +S ++    L + GF          K  K  R++ G+ +   F
Sbjct: 590 RAYRSWAETNG--IRKMLSQKSFRDRLTRLGFGS--------KRNKQARLVTGIAMANNF 639

Query: 776 E 776
            
Sbjct: 640 P 640


>gi|297660619|ref|YP_003710330.1| phage/plasmid primase [Waddlia chondrophila WSU 86-1044]
 gi|297377495|gb|ADI39324.1| phage/plasmid primase [Waddlia chondrophila WSU 86-1044]
          Length = 683

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 99/509 (19%), Positives = 181/509 (35%), Gaps = 40/509 (7%)

Query: 275 EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334
           +E    A++   +            K L     +++ +  +F    +  +L+        
Sbjct: 201 DEKRKEAEELRRYVEQHEKEKTENEKVLERLNKNESGDAEIFVELFEKKYLFDPTEG--- 257

Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS--PRFWFNTDYR 392
                  Y+W       T  I        E V D       +    +S     +  +   
Sbjct: 258 --KNGAFYLWDGCQW--TLDIHKERYKDFEKVSDTYLIATSDESIDESVSKELFKRSQQL 313

Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
           R +   ++  ++ +  L             D     L   +GI++L+TG      +E YI
Sbjct: 314 RTSRRRSNVLETVSAYLSFKHS-------WDYCPNKLPCSNGIINLKTGDLETAQRENYI 366

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
            K   T + +     +FL  +       +E+  +  R +G ALLG  K ++  +  G G 
Sbjct: 367 KKVCPTSYEKNANCPKFLKFLDDITLGDKELSSFIGRVIGYALLGVPKEEKIFYFYGNGR 426

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           +GK TLM++I++  G           + Q  PP +   NP L  L G R+ + SE NE  
Sbjct: 427 NGKGTLMHVIQHVLGALSKTFPSEMLLSQRNPPSSSSPNPELANLEGVRMAVFSEINEGR 486

Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
           +I++AK+K ++G D +  R  Y N   +   + T  +  N      + D A W R I+IP
Sbjct: 487 KIDSAKVKNLSGRDIIPCRRLYSNVDLQITPTHTMILQTNYKPKAPSEDKALWSRNILIP 546

Query: 632 FDKPIANRDASFA---------QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
           F                     +    +      KW + G   Y   GL V  P+  +  
Sbjct: 547 FKARFVKEPKDGENEREIKESLKDELLEEAKGILKWMVDGCLEYQEIGLKV--PQSVIDQ 604

Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
            E  R+  D    ++++ C     +  +   +  +   Y +     + K  +   ++  L
Sbjct: 605 TEGYRKENDGIGCFLEEMCFQDPAVSTQKSKMEAAIKNYCKAN---EMKEPTRNEISDYL 661

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           K +           E         KG+K+
Sbjct: 662 KIR---------FKEGRKSQGSYWKGIKI 681


>gi|298249763|ref|ZP_06973567.1| phage/plasmid primase, P4 family [Ktedonobacter racemifer DSM
           44963]
 gi|297547767|gb|EFH81634.1| phage/plasmid primase, P4 family [Ktedonobacter racemifer DSM
           44963]
          Length = 480

 Score =  259 bits (662), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 172/481 (35%), Gaps = 39/481 (8%)

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
             L+     D  N   F +     FL+  +              ++    +         
Sbjct: 17  SELMDFSADDGGNADTFEVLYGSDFLHVPELG---------WLHYNGKFWEQDR------ 61

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
                 V  + +        +            +++V     A    +S       +   
Sbjct: 62  ---AALVRAVEDTLVQRRLEAVRCDKEKIVGVTKRDVFRIDGATKLLES-----RLNADI 113

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-- 477
           +  D++   L   +G+++L TG           T +  T +     S E+   +S     
Sbjct: 114 EDFDNNPDLLNVANGVVELSTGDLAPHDPSQRFTYALATDYDPMADSSEWEAFLSQAVTP 173

Query: 478 ----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
               E +E++++  + VG ++ G  + +R  ++ G   SGK T    +         +  
Sbjct: 174 DGQEEDKELLNFIQQAVGYSVTGHTREERLFYVYGPTRSGKGTFTESLMTLVPRPLSMEV 233

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
           + +     R  +    N  L  +  SR++  SE+N+   +N  KIKQ+TGG+ + A   +
Sbjct: 234 DFNTFTARR--DGNDQNFDLADMKPSRLIFASESNKYQSLNPGKIKQLTGGNWVQAAFKH 291

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYT 652
              +S     +  ++  N  +     DDA W R +V+ F +      D S   +L+    
Sbjct: 292 KQRFS-YRPQYAVWLSSNHKVMGDPEDDALWYRVLVVEFPNSHKGKEDTSLKARLKQPEA 350

Query: 653 L-EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                KW + G   + +    + +PE    A +  R   D    WI+D     +  +  S
Sbjct: 351 QRGILKWVVDGAFNWYATE-RLQVPEGVKLATQAHRDDLDNIALWINDEVIEEDGAFASS 409

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE-KEWKSKRIIKGLK 770
             L +SY  + E       +   +R + L LK++G+        +E  + K  R  +G++
Sbjct: 410 AELYQSYKPWCEDNG---VEPKKSRELGLALKKRGYEDSKDYILLENGKRKQVRGWRGVR 466

Query: 771 L 771
           +
Sbjct: 467 V 467


>gi|325685155|gb|EGD27281.1| phage/plasmid primase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 831

 Score =  259 bits (661), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 122/826 (14%), Positives = 236/826 (28%), Gaps = 113/826 (13%)

Query: 29  RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ------------PLYAFDIDSKDEK 76
           +      W +   +S+ +    A       G                PL   D+D   + 
Sbjct: 34  KSTEATGWTDYQTASKALT---AANNALQEGKITGVIKFTFSLRITPPLVFIDVDDIPDP 90

Query: 77  TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFV 136
            A+        L       + Q    L  F    EG   K     T    ++   G+Y  
Sbjct: 91  EASAQFKDLTKLTKGGYCEVSQSGNGLHYFV---EGKLDKAHKGKT---YEMYTGGRYVA 144

Query: 137 AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKT 196
                  T  + + +         +   +            Q     LV   +     + 
Sbjct: 145 F------TGNQVSNSDSILALTESEIKAIVSYCGFKWTGKKQAKEPLLVTTPQPTGNGRH 198

Query: 197 WTNNNNRQYTNREITAFLSCFGEEFYNGSH----DEWIPVVMAVHHETR----------- 241
           W  +N          A  +   +   +G +     +    V A+ +              
Sbjct: 199 WGADNGLTAEQVLSNAINNPELKAVASGDYSAYNGDHSSAVQALVNSLAFYANGDAAKTD 258

Query: 242 ------GSSKGKEIARRWSKQGSTYDEENFNYKWD------------------TFDFEEI 277
                  S          S+  +T+  +      +                       E 
Sbjct: 259 QAYRSTPSFTDDTKWDA-SRGDTTWGAQTIAKAINYVQTKHPDHGYFPARQNSGMRVVEP 317

Query: 278 GDTAKKRSTFTSLFYHHGKLIPKGLL---ASRFSDAYNKAMFSI-YKKGHFLYTADTKAW 333
           G+ A   +    +     +    G         ++      F+  Y KG  +Y    KAW
Sbjct: 318 GERATAETLKIKIDGVEREFPFNGYFYNRDYEMTEVGFANRFADWYAKGKLVYHPGLKAW 377

Query: 334 YKKD--KNNVYIWSLTLD------KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385
              +    +                    I N  V++K++         D +K  K    
Sbjct: 378 LMYNPETGSWMPNGDDRLGTTFNQTPEKLIDNLRVNLKKEKRLWLTVGRDPHKPDKQSFG 437

Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445
               +   + +   +  K+T +  ++           +     L  + G +DL+TG    
Sbjct: 438 EKAYNKGYERISSAAGQKATLELAQSRLTVR----AFNDCKTELNTRTGWIDLKTGAISP 493

Query: 446 PTKELYITKSTGTPFVEGEPS----QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKA 500
            +      K+T              + +   +   F    E++DY   C+G ++ G    
Sbjct: 494 HSPAKLFDKATDAGLPNKATEGDGGKLWDRFLKETFCGDLELIDYVQACIGYSVTGKINE 553

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA-NPSLIRLMGS 559
           +      G GG+GKS  +  I    G+   +    + I  N+    G A +P L  L G 
Sbjct: 554 EVMFICEGSGGNGKSIFLECINEVLGDYSSVIPIETLIDNNKAQRDGSAPSPDLASLKGK 613

Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
           R V+ +E  +   I+   +K +TGG  +  R+ + N        F  +   N    +   
Sbjct: 614 RFVMTTEPKKQVTIDDGIVKTVTGGTKLNVRMLHQNPIV-FLPQFKIWWQSNGLPRIAIK 672

Query: 620 DDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLD----- 672
           + +  RR IVIPF   +     D +   KL  K      KW ++GV  + ++        
Sbjct: 673 EHSMLRRLIVIPFKNEVRGDAVDINLKSKL-MKEKEFILKWCIEGVAKWQARDGKALYHP 731

Query: 673 VDIPEVCLKAKEEERQGT----DTYQAWIDDCCDIGENLWEE--SHSLAKSYSEYREQEL 726
              P    +A            D+ + W+++      +         + + Y  Y ++  
Sbjct: 732 KYQPAAVEEATAGLWNSAHVPVDSIKQWLENGNYEEGHSSTPPKVKEVYEDYLAYCKEHE 791

Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
                  + +     L ++G           K   +      + LK
Sbjct: 792 LKVPSAYTKQGFNKELARRG---------HHKRPGTGNSYVWISLK 828


>gi|303245368|ref|ZP_07331652.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
 gi|302493217|gb|EFL53079.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
          Length = 576

 Score =  258 bits (658), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 95/515 (18%), Positives = 184/515 (35%), Gaps = 43/515 (8%)

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK--------ITASI 355
           A R+ +  + A+     +G   Y A     Y+ +  +         +        I A  
Sbjct: 57  AFRWKNVGDAAIAIKLLRGKICYDAVADKPYRFNCTHWLRDKNANWRKALFGVADIYAIR 116

Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKS---PRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
               +   + V +       + + S      +     +   + V          +  EA 
Sbjct: 117 ARHYLEQAKTVEEECNAAPKDEQKSLKPLVKKAQKIAEAWIKRVNSCRDTSYVRKIWEAA 176

Query: 413 SI----FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQ 467
           +      +I+ D  +     L  ++ ++DLE G+ + P    Y  K+   PFV+    + 
Sbjct: 177 TSGDGSLAISGDEWNQRPTLLPCKNCVVDLEKGKPLDPDPFQYFNKAAIAPFVDLHAEAP 236

Query: 468 EFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
            FLD +S      ++++DYF   VG A  G      F      G + KS +   ++   G
Sbjct: 237 FFLDTISKALCRDKQLIDYFDYMVGFAATGLQTKDFFCAYGPKGDNAKSVVFEWLRKVLG 296

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGD 585
           +        + + +     A   +PS+++L G R+ + SE ++  +   AKIK + +GGD
Sbjct: 297 DFAGTIKVETILDEKFMRSADGPSPSMLKLRGLRMAVTSEADKKHQFAMAKIKSICSGGD 356

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-------AN 638
            + AR        E     T  +  N        DDA+++R  VIPF            +
Sbjct: 357 RLEARGINAVDIIEFNPELTLIMHSNHIPKASGNDDAFYKRIKVIPFRAKFIAEKDGPED 416

Query: 639 RDASFAQKLET---------KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
            D                  +       + ++     +  G     P   L   ++ R  
Sbjct: 417 PDHHIYHAKSRSRIVDPTLTREMPGIMAYIVRCAVKALKAGDMPPAPPAVLIETDQYRTD 476

Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR-ISTRTVTLNLKQKGFI 748
            D    ++ +C D   N  E+   +  ++ ++  +E     K   S   +  +LKQ    
Sbjct: 477 QDIVGQFLRECTDPDSNNQEQMKDIYFAFRKWCAEEQMMPPKAIWSQNALGKDLKQ---- 532

Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
               R ++E+   +    KGL++KP +   + + N
Sbjct: 533 ----RNELERIPSNVTYYKGLRIKPQWRKQEGDIN 563


>gi|109287999|ref|YP_654693.1| hypothetical protein MIV121R [Invertebrate iridescent virus 3]
 gi|123808611|sp|Q196T9|VF184_IIV3 RecName: Full=Putative helicase 121R
 gi|106073622|gb|ABF82151.1| hypothetical protein MIV121R [Aedes taeniorhynchus iridescent
           virus]
          Length = 941

 Score =  257 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 121/791 (15%), Positives = 250/791 (31%), Gaps = 109/791 (13%)

Query: 55  GFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114
            F  G G + L+A DID   E   +   +   +++G+      +  +I   +  N E + 
Sbjct: 169 AFRLGSG-KRLFA-DIDDAPENFIDDVTNKCWLMYGSSKSEDKKPYRISQVYSGNLEPMD 226

Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL- 173
             +                 F     + K ++  T T    +  +     +S    E L 
Sbjct: 227 LYEA----------------FSIKPFYTKEEEPITVTVDNVKKILPQLLSISSIKKEVLN 270

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
            K   ++ +P     K  +      N+   +   ++    L    ++  N  ++ W  + 
Sbjct: 271 VKTPMDLKIPTKIYLKQELKDIEGENSETIKRNLKDAKDLLKILNKKRANE-YNSWWDIG 329

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293
           + + +   G      I  +WS     YD +     W++           K     SL ++
Sbjct: 330 IILFNIGHGCEDAFTIWDKWSSYSDKYDPDACVQVWNSMHLR--NPRFSKIKGMGSLRWY 387

Query: 294 HGKLIPKGLLAS------------------------RFSDAYNKAMFSIYKKGHFLYTAD 329
             +   KG  A                                + M  +Y      Y   
Sbjct: 388 VKQDNLKGYTAWVDKMHGLVLDEKNLVECVTRLEIMTTDTPLARLMLDLYSGE---YVFS 444

Query: 330 TKAWYKKDKNNV------YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
              WY  +            + +  + I+         + E ++  +++   +++     
Sbjct: 445 DAGWYSFNGTIWSPVKVLKDFRVKFEHISTKYKEMRKRIMELIYHKNDDSGRDSEEDSQE 504

Query: 384 R-------------------FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
                                + + +     +E  +      +  E        SDLLD 
Sbjct: 505 EEVSSSQEQLSAKHRAILMAKYRDINRAINKLENFATQNGILKMCEVFFYNEDFSDLLDE 564

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGYFES 479
           +   +  ++G+ D ET    K  +  Y++K+    + +          E  + +S  F  
Sbjct: 565 NPLLIAFKNGVFDFETLTFRKGLQSDYLSKTLNIRYDDTLTDDSEEVLELYNFLSKIFPD 624

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
           E+V  YF   +     GGN+ +  +   G G +GKS    L +   G +  +    S + 
Sbjct: 625 EKVRAYFVDQICEVFRGGNRDKIAMFWTGNGNNGKSVTQRLFETMIGKKLAVKLSTSVLT 684

Query: 540 QNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGN--T 596
           +   P  G+ NP L RL G     +  E  + ++I +  +  +TGGD +  R  +     
Sbjct: 685 ERIQP--GQPNPQLTRLRGGIRWGVFDEWGKTEQILSGSLNVLTGGDSLPCRDLFQKGSD 742

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----------------- 639
            S+    F    + N+   +++  DA W R  +IPF+     R                 
Sbjct: 743 SSDFTPMFKLLCICNELPCLKDAVDATWDRIRIIPFESKFVAREKCPETEQEQREKKLFL 802

Query: 640 -DASFAQKLETKYTLEAKKWFL-----KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
            D    QK   +    A  W+L     +  K   +    V IP+    AK + +   D  
Sbjct: 803 CDTEITQKDRMESLARALGWYLVKIFKEKEKKRRNGTYQVTIPDKVNDAKLKYQAKCDIL 862

Query: 694 QAWIDD-CCDIG-ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
             ++++       ++       +  S+  +     +     ++       ++ K  +   
Sbjct: 863 AFFMEETYLKTDNQDHKIPFDDMYISFKNWYINSFSGKMVTLNKHEFIEMVRNKYNLTET 922

Query: 752 KREKIEKEWKS 762
            +      W  
Sbjct: 923 DKALRGYMWNR 933


>gi|209808767|gb|ACI88730.1| gp88 [Mycobacterium phage Troll4]
          Length = 982

 Score =  256 bits (654), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 144/979 (14%), Positives = 260/979 (26%), Gaps = 236/979 (24%)

Query: 6   WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56
           ++   +     G+   +PL    K+  P           S + I                
Sbjct: 13  FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72

Query: 57  VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100
             G  E          L   D+D  +     ++           L   P   +   +   
Sbjct: 73  HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYISSSRTGV 132

Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147
             +  F +  +             H+DI+    +Y + +   HP               +
Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188

Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172
           Y W  P             V D PLL +  VE                           +
Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
                           K     K W        +  +                H  W   
Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308

Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263
           + A         + +  +            SK                      + Y+  
Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368

Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
               + D F                E    + + R  +           P+       SD
Sbjct: 369 --ADELDAFTASLNSAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424

Query: 310 AYNKAMFSIYKKGHFLYTADTKAW------------------YKKDKNNVYIWSLTLDKI 351
             N   +    K +  Y      W                  Y++ K     ++  L + 
Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484

Query: 352 TASIMNFLVSMKEDVFDLSEEPED---NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
            A +             +++        + +                +EE     + A  
Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPALI 544

Query: 409 LEAGSIFSITSDLLDS-----------------------------------------SSR 427
                +  +    LDS                                            
Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGRNGRNGRNGRNGRNGTANVASLAEDDEEFDPD 604

Query: 428 FLGE-QDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLV 473
           +     +        +  +  +E  +T STGT ++  +              +  +   V
Sbjct: 605 YEAVAPN-----SHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAV 659

Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
             Y   EEV  +  + +G +LLG N+ +  + + G  GSGKST +N    A G+   +  
Sbjct: 660 EMYLPDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGDYADV-V 718

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
           +      +R     + NP+L   +  RIV  SE ++ + ++A   K++TGGD +TA L Y
Sbjct: 719 DLGIFKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKY 773

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YT 652
            N   +   +F P+I  N    +   D A   R +V+ F++ I  +D      L +    
Sbjct: 774 SNESVKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAK 833

Query: 653 LEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC----------- 700
                W ++G   Y  +GL   D P        E          +I +C           
Sbjct: 834 TAVLAWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISECVEEAPVSLRRK 893

Query: 701 --------CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
                   CD  E        +   Y  + ++    DR  +     +  LK  G+    +
Sbjct: 894 AERRNWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----R 949

Query: 753 REKIEKEWKSKRIIKGLKL 771
            E ++K+  + R   G KL
Sbjct: 950 AEVVKKDGFTSRTYAGFKL 968


>gi|31983840|ref|NP_858448.1| RepA protein [Sulfolobus islandicus]
 gi|11137542|emb|CAC15841.1| RepA protein [Sulfolobus islandicus]
          Length = 896

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 113/835 (13%), Positives = 235/835 (28%), Gaps = 86/835 (10%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCGVG 61
            AK  + +GF + P+    K+P  +   K+  Q L+ E+  K          +    G  
Sbjct: 38  YAKMFVEHGFAIFPIDPETKKPVSKEWQKYSHQPLTEEEKQKFLEMISQGYNYAVPGGQ- 96

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF----RMNKEGIKKKK 117
            + L   D + K+           + L       +      +  +    ++ +       
Sbjct: 97  -KNLVILDFEDKELLKNWITGTALDNLCKEKTFCVETPHGGIHIYLQADKVPEHKFNPLF 155

Query: 118 TTESTQGHLDILGCGQYFVAYNI-----HPKTKKE-YTWTTPPHRFKVEDTPLLSEEDVE 171
             +  +G  D+     Y V         H  + K  +        +       + E  ++
Sbjct: 156 -IKDGKGIADLQSFNSYVVGPGSCINHKHCDSNKCNWRGKNYIGFYIPIKDRQIGEIKLK 214

Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
              ++  + +  L  +  +   +        ++ T +E         +      +D    
Sbjct: 215 DFLRWLADKSKSLGIELANNARAWLEGKKEEKEDTAKEFEELRKELIK------YDSGKS 268

Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF 291
           +               ++ +    +G +Y E   +     +             +   L 
Sbjct: 269 IERIKEEICNKKPP--KLIKHIICEGKSYAEAGIDRSRGDWRVILYLMRHGVTDSGKILQ 326

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
                   K          +   +   +        A  KA   K      I     D+I
Sbjct: 327 LLPSDSKAKDNEKWDAKKYFAVTLSKAWNIVKKYLEAKKKAKEDKSTAKALIIEAIADEI 386

Query: 352 TASIM-------NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
               +       + L   K  +F  +++        +      N              K+
Sbjct: 387 MHEHILSTFIQTDNLKESKIGLFRFNKKKGIFEPFDERIEKIINKKLEEYKEFPLGSDKT 446

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
                    I   T   L      +  ++G L+      +    +    K     +++  
Sbjct: 447 RVVRNIKEEIMRRTQRQLLLEPLRIAFKNGTLEWTDKGIIWYDSKERTYKQYAFHYIDWN 506

Query: 465 -------------------------PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK 499
                                       + L+    + + + +       +G  L     
Sbjct: 507 LRIEEIEKFNEREITVQDIEDLARRVCPKALETFKQWVDDQWI--LLYEIIGYTLYPKYI 564

Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
             + I + G G +GKST +NL+    G   V       IM+           + I L   
Sbjct: 565 FNKAILLVGNGSNGKSTFLNLLLKILGKNNVTAVSLKRIME-------GDRFAPIELYHK 617

Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
              I SE       N    K++TG D +     + +               N+   V++ 
Sbjct: 618 LANINSELFTFKVTNTDLFKKLTGEDYIIGEKKFRDPMY-FINYAKLINATNELPEVKDQ 676

Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
              +WRR+IVI F          F +  +           +      + +    D  +  
Sbjct: 677 SYGFWRRWIVIEFPHQFPPDPNFFDKTFKESEIEGIITVSVLAFSRVLQQK-KFDFEDSS 735

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGE--------NLWEESHSLAKSYSEYREQELNYDRK 731
              KE   + +D+  A++ D  +  E        +L+     L ++Y+E+  +    DRK
Sbjct: 736 ADIKELWERKSDSVYAFVKDLIENNEVEYDPRNGDLFTPVKELYQAYAEWCNEN---DRK 792

Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
             +  T T  L+ +  I   ++   E+ W       G++LK    S   N    D
Sbjct: 793 PEAQSTFTKRLESRFRIIKSQKRIGERVW----CYVGIRLKNNNISTGSNEKPGD 843


>gi|10954551|ref|NP_044372.1| hypothetical protein pRN1_p6 [Sulfolobus islandicus]
 gi|1345114|gb|AAC44111.1| ORF904; Method: conceptual translation supplied by author
           [Sulfolobus islandicus]
 gi|147842920|dbj|BAF62550.1| rep904 [synthetic construct]
          Length = 904

 Score =  254 bits (648), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 123/825 (14%), Positives = 246/825 (29%), Gaps = 92/825 (11%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----CGFGFVCGV 60
             AK  + +GF +IP+    K+P  +   K+  ++ S E+  +          +    G 
Sbjct: 45  RYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ 104

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--------FRMNKEG 112
             + L   D +SK++  A   +   E L    +        I I          ++N   
Sbjct: 105 --KGLVILDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 162

Query: 113 IKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLLSE 167
            +  K     Q +   +LG G      +      P  ++ YT     +     +   +S+
Sbjct: 163 EENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLY----NELKEISK 218

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
            D++ L +F  E    L         +K W      +         L     +  +G   
Sbjct: 219 VDLKSLLRFLAEKGKRLGI--TLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKPV 276

Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
           E I   +      +       + +    +  TY + N +     +               
Sbjct: 277 EKIKEEICTKSPPK-------LIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPD 329

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
             L         K          +   +   +        A  KA   K      +    
Sbjct: 330 KILELLPRDSKAKENEKWNTQKYFVITLSKAWSVVKKYLEAKRKAQKDKSTAKALLIEAI 389

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
            +++            + + +        NK       +     +  NV+     +    
Sbjct: 390 AEEVLHEHFLVTFIQTDQLKESKIGLFRFNKKKGIFEPFDERIEKIINVKLEEYKEFPLG 449

Query: 408 SLEAGSIFSITSDLLDSSSRFL-------GEQDGILDLETGQKVKPTKELYITKSTGTPF 460
           S ++  I +I  +++  + R L         ++G L+ ++        +    K     +
Sbjct: 450 SDKSRVIRNIKEEIMRRTQRLLLEESLRIAFRNGTLEWDSKGVTWYDVKERTPKVYSFNY 509

Query: 461 VEGE-------------------------PSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
           V+                                L+    + + + V       +G    
Sbjct: 510 VDWNLKIEEIEKFNMKEITVEDIENLARRVCPRSLETFKQWVDDKWV--LLFEVIGYTFY 567

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
                 + I + G G +GKST +NL+    G + V       IM+           + I 
Sbjct: 568 PKYIFNKAILLTGAGANGKSTFLNLLLKILGQKNVSAMPLKRIME-------SDRFASIE 620

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L      + SE       N    K++TG D +  +  + +           F   N+   
Sbjct: 621 LFHKLANVSSELFAFKITNTDLFKKLTGEDYIEGQKKFRDP-IYFINYAKLFNATNELPV 679

Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
           V +    +WRR+IVI F          F +    +         +      + +    D 
Sbjct: 680 VSDQSYGFWRRWIVIEFPHQFPPDPNFFDKTFTVEEVEGVITVAVIAFARVLQQK-KFDF 738

Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGE--------NLWEESHSLAKSYSEYREQELN 727
            +     KE   + TD+  A++ +  +           +L+  +    ++Y E+ E+   
Sbjct: 739 EDSSANVKELWERKTDSVYAFVKELLETERAEYDPANGDLFMPTEDFYQAYLEWSEEN-- 796

Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
            D K  S   VT  L+ K     I ++K +   K      G++LK
Sbjct: 797 -DTKAESKAVVTQRLQSK---FRITKDKKKINGKRVWCYVGIRLK 837


>gi|109522656|ref|YP_655468.1| gp89 [Mycobacterium phage PLot]
 gi|88910763|gb|ABD58688.1| gp89 [Mycobacterium phage PLot]
          Length = 983

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 151/993 (15%), Positives = 274/993 (27%), Gaps = 233/993 (23%)

Query: 6   WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56
           ++   +     G+   +PL    K+  P           S + I                
Sbjct: 13  FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72

Query: 57  VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100
             G  E          L   D+D  +     ++           L   P   +   +   
Sbjct: 73  HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYISSSRTGV 132

Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147
             +  F +  +             H+DI+    +Y + +   HP               +
Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188

Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172
           Y W  P             V D PLL +  VE                           +
Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
                           K     K W        +  +                H  W   
Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308

Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263
           + A         + +  +            SK                      + Y+  
Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368

Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
               + D F                E    + + R  +           P+       SD
Sbjct: 369 --ADELDAFTASLNNAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424

Query: 310 AYNKAMFSIYKKGHFLYTAD--------TKAW----------YKKDKNNVYIWSLTLDKI 351
             N   +    K +  Y            K+W          Y++ K     ++  L + 
Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484

Query: 352 TASIMNFLVSMKEDVFDLSEEPED---NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
            A +             +++        + +                +EE+    + A  
Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEESELNANPALI 544

Query: 409 LEAGSIFSITSDLLDS------------------------------SSRFLGEQDGILDL 438
                +  +    LDS                              +   L E D   DL
Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGRNGRNGRNGTANVASLAEDDEEFDL 604

Query: 439 ETG--------QKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSGYF 477
           +          +  +  +E  +T STGT ++  +              +  +   V  Y 
Sbjct: 605 DYEAVAPNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYL 664

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
             EEV  +  + +G +LLG N+ +  + + G  GSGKST +N    A G+   +  +   
Sbjct: 665 PDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGDYADV-VDLGI 723

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
              +R     + NP+L   +  RIV  SE ++ + ++A   K++TGGD +TA L Y N  
Sbjct: 724 FKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNES 778

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAK 656
            +   +F P+I  N    +   D A   R +V+ F++ I  +D      L +        
Sbjct: 779 VKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVL 838

Query: 657 KWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC--------------- 700
            W ++G   Y  +GL   D P        E          +I +C               
Sbjct: 839 AWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISECVEEAPVSLRRKAERR 898

Query: 701 ----CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
               CD  E        +   Y  + ++    DR  +     +  LK  G+    + E +
Sbjct: 899 NWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAEVV 954

Query: 757 EKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
           +K+  + R   G KL         N+ ++  ++
Sbjct: 955 KKDGFTSRTYAGFKLNS------PNARVLKLQK 981


>gi|228968960|ref|ZP_04129905.1| hypothetical protein bthur0004_57100 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228790735|gb|EEM38391.1| hypothetical protein bthur0004_57100 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 300

 Score =  253 bits (646), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 131/315 (41%), Gaps = 27/315 (8%)

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
           M+Y  R +G +L G    Q  + + G G +GKST +N IK   G         + I +  
Sbjct: 1   MEYMQRLIGYSLTGDISEQIMMFLVGGGSNGKSTFINTIKDLLGEYGKQAKSDTFIKKK- 59

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                 AN  + RL+G+R V   E+ E ++++ + +KQ+TGG+ + AR      Y E   
Sbjct: 60  ---DTGANNDIARLVGARFVSAIESEEGEKLSESFVKQITGGEPVLARFL-RQEYFEFVP 115

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
            F  F   N    +   D+  WRR  +IPF+  +    RD    +KL          W +
Sbjct: 116 EFKVFFTTNHKPVIGGLDEGIWRRVKLIPFNLNLPSHKRDKRLPEKLSL-EMPGILNWAI 174

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE----SHSLAK 716
           +G   +    L    P+V  +A  + +   D    ++D+ C + E   E     +  L  
Sbjct: 175 EGCMKWQQGRLK--EPKVVAEATGKYKDDMDILAPFLDEVCYVDERENESITIEAKELYN 232

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KP 773
            Y  +     N   + +  R+    L+ KGF          K  K++  + G+ L   KP
Sbjct: 233 VYERWC---FNSGERALGNRSFYRMLETKGFGKT-------KGSKNRTFLTGITLNERKP 282

Query: 774 AFESVDDNSNIIDFK 788
             + V +N+    FK
Sbjct: 283 VTKGVTENNKNGKFK 297


>gi|42761469|ref|NP_976264.1| primase [Acidianus ambivalens]
 gi|3059074|emb|CAA12526.1| primase [Acidianus ambivalens]
          Length = 909

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/871 (14%), Positives = 243/871 (27%), Gaps = 146/871 (16%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCGVG 61
            AK  I NG  + P+    K+P  +   ++  + L+ E+  K          +    G  
Sbjct: 8   YAKWFIKNGAAIFPIDPNTKKPVVKEWQRYSHEPLTDEEKQKFLEMISQGYNYAVPGGQ- 66

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--------FRMNKEGI 113
            + L   D + K+   A   ++T   +    +        + I          + N   +
Sbjct: 67  -KNLVILDFEDKELLKAWIGEETLNKICSKTLCVTTPHGGLHIYLIVDEVPPHKFNPVFV 125

Query: 114 KKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLLSEE 168
           K  K     Q     +LG G                 K+YT    P        P   ++
Sbjct: 126 KDGKGVADLQSFDSYVLGPGSCINHKYCSSEKCKWKGKDYTTCYIPVNNTGIGRP---DK 182

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSK-TWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
            ++   K+  +    L  +      +        +  +T +++        +        
Sbjct: 183 GLKNFLKWLADKGKKLGIELSGSARAWVEGKQEKSDSHTEKDLEKLKEEMAKYNRFKGKT 242

Query: 228 ---EWIPVVMAVHHE-----TRGSSKGKEIARRWSKQGSTY------------------- 260
                  V  ++        +  +      A +   QG  Y                   
Sbjct: 243 VDAIRSEVCQSIKKSLDNAKSDKAKAMLNTAFQVVCQGKKYSDLGIDRSRGDWHVLKTLL 302

Query: 261 ----------------DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304
                           D + F  KWD +    +     +   F ++  +  K   K  L 
Sbjct: 303 SHGVTDIDMLQQLIPNDSKVFAPKWDKYFVHTLMKAWNEVKPFLTVLKNAKKKKAK-ELK 361

Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
             F++A ++ +   Y             + +K  N   I  +        I   +    +
Sbjct: 362 EEFAEALSQYIIRKYH---------IITFIQKHGNGESIVGIFRWSKKKGIYEPVDKTLK 412

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
            +          ++  +    +  ++   +      K+       +     ++T    D+
Sbjct: 413 KI--------IRHEIMRIKELFPKSEEEGKVTFYEIKSGLVKLVYDEIMDLTLTEYDDDN 464

Query: 425 SSRFLGEQDGILDLETG---------------------QKVKPTKELYITKSTGTPFV-- 461
               +  ++  L+  T                        +       +  +T  PF   
Sbjct: 465 IPLRIAFENYTLEWSTDKKENIFKLIPANERTEEHYSFHYIPHKIRDEVFNNTPLPFQVS 524

Query: 462 -----EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
                  +     LD    +   + +       +G  L    K +    + G   SGKST
Sbjct: 525 ELEDLARKLCPRSLDTFKQWAGDKWI--TLFEIIGYTLYPATKIKLAFMLLGPRDSGKST 582

Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
            + L+K   G    ++         +          +  L      + +ET E    +  
Sbjct: 583 FLQLLKKILGKHNTVSIRV------KELFDSNNRFVMGYLFHKLANLTAETKEYTINDID 636

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKP 635
           + K +TGGD +T+ + + N            I  NK   V +  D A+WRR+++I F   
Sbjct: 637 RFKTLTGGDQVTSDVKF-NGPITFTPYAKIIIASNKLPNVSDKNDMAFWRRWLIIEFPNT 695

Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI--PEVCLKAKEEERQGTDTY 693
             N D  F Q    +         +      I  G       PE             D+ 
Sbjct: 696 FPNDDNWFRQTFTEEEIEGILTVSILAFARVIINGKFDYQQTPEEVRGL---WLNNIDSV 752

Query: 694 QAWIDDCCDIG--------ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            ++I    + G         +LW     L   Y EY           +S RT    L  K
Sbjct: 753 WSFIKTYVEKGIITLDPRNADLWVPRKELYNLYKEYCLDNGFPG---VSLRTFANKL-NK 808

Query: 746 GFIGGIKREKIEKEW----KSKRIIKGLKLK 772
            F     ++   K+       KR   G+ + 
Sbjct: 809 YFGITSMKKNFGKKPDGTDDRKRCFVGITIN 839


>gi|254438338|ref|ZP_05051832.1| D5 N-terminal domain family protein, putative [Octadecabacter
           antarcticus 307]
 gi|198253784|gb|EDY78098.1| D5 N-terminal domain family protein, putative [Octadecabacter
           antarcticus 307]
          Length = 508

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/416 (19%), Positives = 162/416 (38%), Gaps = 24/416 (5%)

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
              E  E   +  +  +       +      ++  ++        ++ +   D  D++  
Sbjct: 77  AKLEAVEARFRQGEIEKKDRLAAKKLYANLRSTTRRTAVWQTAVVNMDAAEVDDFDANPE 136

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGT-PFVEGEPSQEFLDLVSGYF-ESEEVMDY 485
            LG   G++DL TG+    T    +T+ST   P   G  +  +L+ +S  F   +E +++
Sbjct: 137 LLGTPGGVIDLRTGEVRSATVGDKVTQSTDVAPAQAGASASRWLEFLSQVFEGDKETLEF 196

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
             R VG AL+G   AQ+F  + G G +GKS L +++    G+     +    +       
Sbjct: 197 IERLVGSALVGNVSAQKFFVLYGRGSNGKSVLRDVVSCLVGSYAGTASAKVFM----QSH 252

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
           + +    +  L G R+V+ SE       N A +K++TGG+ MT R  + N +S      T
Sbjct: 253 SDRHPTEIASLAGKRVVMASEVPAGRSWNDALLKELTGGEKMTTRWVHQNEFS-FTPRGT 311

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGV 663
                N         +A  RR ++I F +      +D +    L +       +W + G 
Sbjct: 312 LIFTANTLPSFTGAQEAMLRRIVIIEFKRNFTEDEQDPNLVADLISTEGSAILRWAIDGA 371

Query: 664 KAYISKG---LDVDIPEVCLKAKEEERQGTDTYQAWIDDC-------CDIGENLWEESHS 713
           + +++ G     + IP+    A     +  D    ++ D         D     +     
Sbjct: 372 RKFLADGGGVRGLRIPQSITDATRTYFEEEDIVLQFLIDAQGSAATSIDWSPGAFVSCSQ 431

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKEWKSKRIIK 767
           L   +  + E + +   K  S RT++  +++    +     R K  + ++ +R + 
Sbjct: 432 LFDEFRRWAESKGH---KSWSVRTLSKVIRENAERYELSDVRTKAARGFRVERRLT 484


>gi|303247554|ref|ZP_07333825.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
 gi|302491034|gb|EFL50928.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
          Length = 524

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 154/430 (35%), Gaps = 25/430 (5%)

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
               ++ ++ +      E   +   S + + +   R  N        +  ++       +
Sbjct: 109 QQREALAQEAYRTDNSKETRGQAEASRKKYVSALKRLSNKHSLDNITALMRT--GRDSLA 166

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSG 475
             +   D +   L   +  +DL TGQ  +       TK   T +         +   ++ 
Sbjct: 167 RDNADFDRNPWALHCLNCRIDLRTGQDREGQLGDMSTKYCQTVWRGLQYEHPAWNAYMAS 226

Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
                ++ +Y    VG A+ G  +    +       SGK+ L+   K  FGN   +   A
Sbjct: 227 LLP-ADMAEYLQHFVGYAITGIQRKAFALFYSKFSDSGKTLLLETFKSVFGNYAGMLPAA 285

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +   +    G   P L  L G R+  +SE+ + D  N A++K ++GGD + AR  +  
Sbjct: 286 LLMEDKKGKGLG-PTPELAELQGLRLAFLSESGKADSFNVARLKWLSGGDTLVARGLFAK 344

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---------DASFAQK 646
                    T F+  N    +   +DA W R  V  F     +          +     +
Sbjct: 345 P-VSFEPMHTLFLASNHLARIGIDEDALWGRIHVFKFPYAFKDNPAKPHERPINPDLKDQ 403

Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
           L  +        W ++G  A+   G   + P    +A E  R   D  ++++   C IG+
Sbjct: 404 LRQEEVKSAILAWAVRGCLAWQKNGQKFNPPLSSREALETYRLNEDYVESFVRARCLIGK 463

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
              E++  L ++YS++  +E   + K +  R     +           +  + +      
Sbjct: 464 EHREQAKPLHEAYSQWHVEEFGSNSKPLGRRKFCEAM---------AGKFEKDDDGRYHY 514

Query: 766 IKGLKLKPAF 775
             GL+LK +F
Sbjct: 515 YLGLQLKSSF 524


>gi|15789518|ref|NP_279342.1| hypothetical protein VNG0215C [Halobacterium sp. NRC-1]
 gi|10579860|gb|AAG18822.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
          Length = 857

 Score =  251 bits (640), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 130/831 (15%), Positives = 272/831 (32%), Gaps = 112/831 (13%)

Query: 31  QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ----PLYA-FDIDSKDEKTANTF-KDT 84
               +W     + E   +  + G G+V           LY   D+D   +K+     KD 
Sbjct: 52  SDPEEWHTFNDAVEAATERDSWGIGYVMASENDDYPRGLYGCLDLDGCLKKSNQEKPKDW 111

Query: 85  FEIL-----HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
              L      G  +   G    I IPF   +               +D+L     F A+ 
Sbjct: 112 LPSLEKFIEDGAYMEYSGSGEGIHIPFVGYEPPEWWADCQLGEHEGVDVLTNK--FCAF- 168

Query: 140 IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199
               T  + + +            +   +  ++LF+ +QEI         S   S  +  
Sbjct: 169 ----TGNQLSVSGDS---------VSGADPTQFLFEAYQEINGEAPSLSSSTGKSGDY-- 213

Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259
           + +      +I   LS       +  +DEW+ +  AVH      S GK +  +WSK GS 
Sbjct: 214 DGDEWLDKSDIEDALSHVNP---DCGYDEWLKLGFAVHD-WDSGSTGKRLFEQWSKGGSK 269

Query: 260 YD---EENFNYKWDTFD-------------FEEIGDTAKKRSTFTSLFYHHGKLIP---- 299
           +D   E N    WD+                ++ G T   RS  T     +G   P    
Sbjct: 270 WDNQAERNIQDIWDSASEGQGVTVGTLIHYAKDGGWTVPTRSNPTGQSQENGHTKPLVEA 329

Query: 300 ------------------KGLLASRFSDAYNKA--MFSIYKKGHFLYTADTKAWYKKDKN 339
                             +G  AS   D + K+  +             ++    +   +
Sbjct: 330 IDSSWFDLDSKTVTVQSVEGYTASELVDVFQKSGNILEACGHEAISAIGESDGGGEFLDD 389

Query: 340 NVYIWSLTLDKITA-SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVE 397
           +   W++   +    + +  L + +     L+E P            W +  D   +   
Sbjct: 390 SGNGWTVEEGRKNPYAHLEPLSNQEIKNTALAELPTHRVAYLPKREIWLWCDDGVWKPNG 449

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDS---------------SSRFLGEQDGILDLETGQ 442
           +    +   + L       I  +++D                    +  Q+G++DL+ G+
Sbjct: 450 DGWVRQWLDEYLGPYYSGHIRREVMDQLQARSQVEEQRFGGGPPGQIAAQNGLIDLDAGE 509

Query: 443 -KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKA 500
              +     +I  +  T +      +++ + +    E+ + +      +G  L     K 
Sbjct: 510 IMREIQPSDHIRWTLATEYDPEADCRKWREFLGEVVEASD-IPLLQEYIGYCLRHWDVKR 568

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
           ++ + + G   +GKS  +++I+  FG +      ++ +        G       RL+ + 
Sbjct: 569 KKALMLLGPTDAGKSVFVDVIEALFGGEDSAATSSTSVQYLANERWGP-----ARLVNTA 623

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
           +   S+  +    N  K+K++  GD + A         +   +       N+       D
Sbjct: 624 LNTRSDLGKGSIENTGKVKELIAGDSLDAERK-RKPVFQFKPTAKHIFAANRAPNRSVDD 682

Query: 621 DAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
           +A+W R++ + F + I   +      ++L  +       W ++G +    +G   + P +
Sbjct: 683 EAFWNRWLTVVFPQAIPRSEQVDDLDEQL-LEELPGIFNWAIEGYQRLEEQGHFTNQP-L 740

Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEES---HSLAKSYSEYREQELNYDRKRIST 735
             + +E+  +  ++   W D C +   + +           +Y  Y         +  + 
Sbjct: 741 PYQNREKWERYGNSIAQWFDRCTEEQPDGFTPKESTDDALGAYDSYVAYARQNGLEVETD 800

Query: 736 RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KPAFESVDDNSN 783
              T  LK++    G+ + +   E        G  L    P      +++N
Sbjct: 801 SKFTSELKRRD---GVSKSRRRIEGNRTYGYSGFVLTDDAPGGSDQQEDTN 848


>gi|315122923|ref|YP_004063412.1| P4 family phage/plasmid primase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496325|gb|ADR52924.1| P4 family phage/plasmid primase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 356

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 241/356 (67%), Positives = 289/356 (81%)

Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
           M K GIKKK+T +S QGHLDILG GQYFVAYNIHPKTK+EYTWTTPP  FK E+ PLLSE
Sbjct: 1   MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
           EDVE+LF+FF+E T P+VK KK I   K      NR+YTNREITAFLSCFGEEF NG+HD
Sbjct: 61  EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120

Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
           EWIPVVMA+HHET+GS +GKE+ARRWSK+GS+YDEENFNYKW TFD EE GD+ KKRSTF
Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFDCEEEGDSEKKRSTF 180

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
            S+FYHH KLIP G+L  RFSDAYNKAMFS++K G+FLY +DTKAWYKKDK N YIW +T
Sbjct: 181 ASIFYHHRKLIPDGILEERFSDAYNKAMFSVFKSGYFLYASDTKAWYKKDKTNRYIWRIT 240

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
            DKI   IM FL+SMK+D FDL EE E+ +   K+PR  +   Y ++N  E S++KSTA 
Sbjct: 241 DDKIAGYIMEFLISMKKDAFDLCEEIENKDGTKKNPRALYLKAYAKRNACEQSRSKSTAN 300

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           ++EA S F I+S++ D++ R++GE+DGILD+ETGQ++ P +ELYITKSTGTPFVEG
Sbjct: 301 AIEAKSPFHISSEIFDANLRYIGERDGILDMETGQQITPKEELYITKSTGTPFVEG 356


>gi|218900594|ref|YP_002449005.1| phage/plasmid primase, P4 family, putative [Bacillus cereus G9842]
 gi|218542423|gb|ACK94817.1| phage/plasmid primase, P4 family, putative [Bacillus cereus G9842]
          Length = 531

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/539 (14%), Positives = 170/539 (31%), Gaps = 29/539 (5%)

Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297
           H        K +    +   S         +      +++ +    +     L +   + 
Sbjct: 14  HILNCHGSLKSLTENINDLSSISQLAAAARQVKNISLKKLLELLLSKKVVDELDFSLIQT 73

Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT-ASIM 356
           I    +    S+ ++    S   +  F+Y  + K  Y+ + N    + LT  K+      
Sbjct: 74  INSDHVKFLTSELHHAVQVSKAIQTGFIYE-EKKIKYRFNSNLFADYFLTRVKMVCDENG 132

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
                 K+ VF L  + E                +R     E    ++  +   + S   
Sbjct: 133 LLYAYSKQGVFKLLTDTEMGRLVRILMNEGLEHSWRSS--HEKEAIQAIKRECFSKS--- 187

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                LD    ++  Q+G+  L+ G   K       T      +        F   +   
Sbjct: 188 ----QLDCMREYVNLQNGMYSLKAGSLEKHHPNFLSTVQIPIKYDGEADCPTFKQFIKDI 243

Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
               +E+ +     +G  L    + ++  +  G G +GKS L  +I    G Q V +   
Sbjct: 244 TCNDKELENVIQELMGYLLSPEIRCEKAFYFFGRGANGKSVLARIIAILVGEQNVSSIPL 303

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYG 594
           S    +           L  ++G  + I  E      ++N    K +  GD M   L Y 
Sbjct: 304 SHFSSDFG---------LEGIIGKTVNIAPENEMRGSQLNTEAFKAIVSGDGMNINLKYR 354

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYT 652
            + +   +      + N+     +  + ++RR  +IPF +  +   ++     +L T+  
Sbjct: 355 PSITNYKSKCRLVFLGNELPDTNDLTNGYFRRMCIIPFKRTFSESEQNRDLLMEL-TEEL 413

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
                W ++G+K             V  +   + R   +    + +       +   +  
Sbjct: 414 PGIFNWAIEGLKRLRENNYVFSCSSVIKEELRKYRLSQNPVLNFFESIVVYDASSKLKRS 473

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
            L   +  + EQ      +  + +    +L     I   +   +EK  +     +G+KL
Sbjct: 474 ELYNHFKLWCEQN--EIDRIRTRQRFYKDLMN--VIDSKELSIVEKRIQGHEYFEGIKL 528


>gi|307320179|ref|ZP_07599599.1| phage/plasmid primase, P4 family [Sinorhizobium meliloti AK83]
 gi|306894225|gb|EFN24991.1| phage/plasmid primase, P4 family [Sinorhizobium meliloti AK83]
          Length = 602

 Score =  250 bits (637), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 84/591 (14%), Positives = 179/591 (30%), Gaps = 106/591 (17%)

Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR-----------FSDA 310
            E+   K + F  +      +   T           +   L                   
Sbjct: 11  PEDVAQKLEEFSAQRE---PENPETPLGPSDEPPAHLSADLEPDEAAVEYCAEFDHSDTD 67

Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM-------------- 356
             K + + +     +   +             +W+ +   ++                  
Sbjct: 68  NGKRLITHFGTDFIVLAQEKAKQPAFA-----VWTGSHWDVSNGGPKATAIAQRLGDRIA 122

Query: 357 ------------NFLVSMKEDVFDLSEEPEDNNKNS----KSPRFWFNTDYRRQNVE--- 397
                         L+    +     EE  +  +             +    ++ ++   
Sbjct: 123 REVAYIKPNAFEQMLIDKAIEARKKPEEDRNPTEKRLAIAAEKAEEAHGKRVKRRLDHAV 182

Query: 398 -ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK----------- 445
              + AK  A    A      + +  +++   +  Q+  L      + +           
Sbjct: 183 TSKNVAKMQAALSCAAPHIMRSPNDFNANRMMVAVQNATLVFHRKTERRKNPRHKSVSET 242

Query: 446 --------------------PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY 485
                                 +   IT      +       +++  +      ++V   
Sbjct: 243 PDAPEYIDACVDSSLEVIPGHRRRDMITHIVPVRYRPEAKCSKWMAFIESKLPDKDVRRL 302

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
                G+ LLG           G G +GKS  M  +    G+  V     S I +     
Sbjct: 303 VQVSSGLGLLGITVQYL-FFHYGDGANGKSVYMETLCRLLGDVAVTLPATSLIGE--GGS 359

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
           +G A+P L RL G R++ + E  E +++    +K++TGG+ +TAR  +   Y++    F 
Sbjct: 360 SGSASPDLARLHGRRLLRVKELPEGEDLRENLVKELTGGETITARDLFS-GYTDFLPIFI 418

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL---ETKYTLEAKKWFLKG 662
             +  N +  +   DD  WRR  VI +   IA  D    +++             W ++G
Sbjct: 419 AIMSGNGYPRITGTDDGIWRRMAVIHWPNKIAKEDRREFEEIVSSFEPEHPGILNWLIEG 478

Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW-EESHSLAKSYSEY 721
              ++ +GL   IPE   KA +E R   D    ++  C +   N    +   L ++Y   
Sbjct: 479 AHIFLREGL--VIPEAVEKATQEYRDDMDRTAGFVGRCIERDANADPLQGKDLYQAY--- 533

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
            +  ++   K ++       + +K           ++   +  +  G++LK
Sbjct: 534 CDDTVDQGGKPMNVTAFGRVMSKK---------FRKERTATGVVYFGVRLK 575


>gi|94311594|ref|YP_584804.1| Phage/plasmid primase P4-like protein [Cupriavidus metallidurans
           CH34]
 gi|93355446|gb|ABF09535.1| DNA primase activity [Cupriavidus metallidurans CH34]
          Length = 632

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/396 (15%), Positives = 137/396 (34%), Gaps = 25/396 (6%)

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS-KAKSTAQSLEAGSIFSI 417
           LV +++  ++  +       N    +   N D     +  N     S   +L+A +    
Sbjct: 218 LVFVRDVFYEYRDGYWQEVDNWSLKQKLTNDDSPYAALLPNPGAVNSLIDALKARTSLVK 277

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
                D     L  Q+ +LD+ TG ++    + +        + E +    +   +   F
Sbjct: 278 FP---DPKPLTLCLQNAVLDIATGSQMPHAPDYWHRNLLDIQYHEDDVCPLWQRFLDETF 334

Query: 478 -ESE---EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
                  E   +    +G  L+   +AQ  + + G G +GKS ++ +++   G     + 
Sbjct: 335 AGDADGSEKKLFLQEFMGYLLVPSTEAQMMLWMIGSGANGKSVVIEVMQSLLGADNHSSV 394

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
               + Q+              L G       E + +  I+ A IK + GGD + A    
Sbjct: 395 PLDSLGQD---------FKKAVLQGKLANFCPEISGSRRIDEATIKSIVGGDEIYAEKKG 445

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP--IANRDASFAQKLETKY 651
            + +S   A        N    V +    ++RR  ++ F++   +   D    +KL    
Sbjct: 446 KDGFS-FRAYARIVAAGNALPDVGDTSHGFFRRLTILRFNRQLSVEEMDRELPEKL-KNE 503

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                 W L G+K +  +    D+P          +  ++  + ++ +C  +        
Sbjct: 504 LSGILAWALAGLKRFREQKRFTDVP-SSRAFVSSYKLQSNPVEVFLTECTKVVAGKKTLK 562

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
             +  SY  + ++  +   + ++       L + G+
Sbjct: 563 SDVYASYKAFCQEGGH---QPLANNKFGAALSELGY 595


>gi|320352359|ref|YP_004193698.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM
           2032]
 gi|320120861|gb|ADW16407.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM
           2032]
          Length = 538

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/489 (17%), Positives = 168/489 (34%), Gaps = 44/489 (8%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA---------SIM 356
             ++  +  +++   KG FL+    K            W+  + +            ++ 
Sbjct: 37  DANERGDGVLYATLHKGRFLFNTTPK------DGAWLRWTGIVWEPDDFKDSFKAVEAVA 90

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE----NSKAKSTAQSLEAG 412
                   D+F  +E+ E+     ++ +        R+ V+     N   K+   +    
Sbjct: 91  LQYEQRALDLFAEAEKLEEKGNKEQADKVLDLAKRYRKRVDRLRTENGAKKALVWAPVVE 150

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
              +     LD     L   +G++DL  G  +       +TK+    +++     ++   
Sbjct: 151 KSMACRELELDRQPMRLPCGNGVIDLTAGVLLDGDPADLMTKAIDVNYLKDADYTDWHKF 210

Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           V     SE V ++  R  G AL G +  Q      G G +GK  L + I    G  Y + 
Sbjct: 211 VVEVCGSEAVANFLKRFFGYALTGHSYEQYIAVFIGGGRNGKGVLFSCIGSVLGPYYHVI 270

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
           + +    Q   P    A+     L G R+V+  E+     I+A ++K +TG D +  R N
Sbjct: 271 SPSMITEQRFDPSPNAASEHKYALHGKRLVVAGESKRGQRIDAGQVKGLTGDDKVECRPN 330

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD-----------KPIA---- 637
           +G  +     + T  +  N        + +  +R + I F            K       
Sbjct: 331 FGKMFV-FDPTHTLCLHTNHMPVGMGSEFSLVQRLLKIDFPWAYVDDPEAEAKKFPPMAD 389

Query: 638 ---NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
               +D     +L         KW ++G   +  +GLD   P+  L +  E     D   
Sbjct: 390 RFRKKDKHLKDRLMQN-REGILKWLVEGCLEWQQRGLDP--PQEILDSAAELANAEDYLT 446

Query: 695 AWIDDCCDI---GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
            +++D         +       L + +  +        +K  + RT+   ++++G+    
Sbjct: 447 EFLNDSLLPSPDDPDREIGFQGLYQCFLWWWGLNQGDPKKAPANRTLAKAMRERGYTLEK 506

Query: 752 KREKIEKEW 760
           +  KI    
Sbjct: 507 RGGKIYVRG 515


>gi|189499201|ref|YP_001958671.1| P4 family phage/plasmid primase [Chlorobium phaeobacteroides BS1]
 gi|189494642|gb|ACE03190.1| phage/plasmid primase, P4 family [Chlorobium phaeobacteroides BS1]
          Length = 486

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/471 (15%), Positives = 161/471 (34%), Gaps = 42/471 (8%)

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN-VYIWSL 346
             L     ++ P                  IY     +  A+ K W    +N  VY+++ 
Sbjct: 35  EILEQLLEQIEPVNFTEFTGGGEVRAVHHRIYAVKSVVRLAERKNWGLCKRNGAVYVFTG 94

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
           +  +             +D+             +  PR+  +    R  + +   +++  
Sbjct: 95  SHWRRVE---------DDDMEAFLGTAA---LRTGVPRYRADDYKFRAELLKQFHSEAHL 142

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGE 464
              E            D+    +  Q+G  ++     Q  +  +  ++T        E  
Sbjct: 143 TQPEP-----------DAGRTLINLQNGTFEITQHGQQLREFRRADFLTHVLPFECREDA 191

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
            +  F   +       +        VG   + G K ++ + + G G +GKS   +++   
Sbjct: 192 KAPLFRSFIERVLPDPDSQRVLAEFVGYVFIRGLKLEKALMLYGGGANGKSVFFDILLAL 251

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G+    +   + +  +R             L    +   SE   N ++ A+  KQ+  G
Sbjct: 252 LGSDNASSYSLASLTDSRN------TYYRAMLADKLVNYASEI--NSKVEASIFKQLVSG 303

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DAS 642
           + + ARL YG  +             N+        +A++RR+++IPF   I  R  D  
Sbjct: 304 EPVEARLPYGKPFI-LKEYAKLIFNANELPRDVEHTNAYFRRFLIIPFTVTIPEREQDKE 362

Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC-C 701
            A K+          W L+G++  + +  ++   +    A ++ ++ +D+ Q ++D    
Sbjct: 363 LAGKIIASELPGVFNWALEGLRRLLQQK-NLSNCDAARHAVDQYKRESDSVQMFVDGRAL 421

Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
           +     +E    L K Y  +   +     + ++ R  +  L+  GF    +
Sbjct: 422 EPSGVGFETLGDLYKDYKSFCADDG---YRGLNKRNFSKRLEACGFEKVKR 469


>gi|15078896|ref|NP_149647.1| 184R [Invertebrate iridescent virus 6]
 gi|82013411|sp|O55768|VF184_IIV6 RecName: Full=Putative helicase 184R
 gi|2738452|gb|AAB94479.1| 184R [Invertebrate iridescent virus 6]
          Length = 971

 Score =  246 bits (628), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 117/700 (16%), Positives = 222/700 (31%), Gaps = 108/700 (15%)

Query: 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201
           P T     +  P          ++S +     FK         +    +    K    ++
Sbjct: 247 PITDTNVEFELPMLLSINPKPSIISNKLF--YFKEAPVKLCDALLPVVNNNREKEGRMSS 304

Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET---RGSSKGKEIARRWSKQGS 258
                 +++T+FLS          +++W  V + + +         +  E  + +S Q +
Sbjct: 305 REIEKMKKLTSFLSVS----RADDYNQWWTVGITLFNIGTGRDCEEEALEAWKMFSSQST 360

Query: 259 TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN------ 312
            YDE   + +W      +  +      T  SL +      P  L     ++  N      
Sbjct: 361 KYDESRCDLEWAEM---KKKNRPLNARTMGSLIFMAKSDNPVALEKYLLAEQMNIENWTS 417

Query: 313 ---------KAMFSIYKKGHF--LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV- 360
                    K +           ++ +  +  Y       + ++ T+     S+   +  
Sbjct: 418 HQNLDVESIKKLKVPVFDTEIAEMFVSQHEDEYLNGNLGWFKFNGTIWSSLESVGRHMRP 477

Query: 361 -------SMKEDVFDLSEEPEDNNKNSKSPR----------------------------- 384
                  S    +  L    +    + +                                
Sbjct: 478 SLVSLSRSYLNLIPALKYITKTLQNDDEGYEPSDSGFGFDDDDSASTSGGKTTAEITKLV 537

Query: 385 --FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
                  +   +  + N    S  + +E        +D +D + + +   +G+ DL    
Sbjct: 538 NSKIKLINDLAKKCQNNGPQMSLMKVIEDMIGIDNLNDKMDQNKQLIAFTNGVYDLSLFT 597

Query: 443 KVKPTKELYITKSTGTPFV-----EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG 497
             +   E YIT+    P+      E     + L+     F  EE+ +YF        +GG
Sbjct: 598 FRQGLPEDYITRQMTIPYDITLTMENPKVIKMLNFFKKIFPDEELFEYFMLENCEMYIGG 657

Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL- 556
           N+ +      G G +GKS    +I+  FG   V   +   ++   PP+AG   P L R  
Sbjct: 658 NRDKILQIWTGEGDNGKSVTNKIIENKFGKLSVKFPKG--MVTGDPPKAGACFPELTRAQ 715

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGG-DCMTAR--LNYGNTYSESPASFTPFIVPNKH 613
            G R  ++ E   ++ +NA  IK +TGG D + AR     G    +    F    + N  
Sbjct: 716 RGVRWAVVDEFAPDETVNAGVIKNLTGGIDNLYARDIQQKGKDVIDIDPFFKLIFICNTI 775

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN-----------------RDASFAQKLETKYTLEAK 656
             +RNPD+A W R  VIPF+    +                 +D SF +K   +   EA 
Sbjct: 776 PNIRNPDNATWNRIRVIPFESTFKDSIDDISLEEQKRDKIFLKDTSFCEKETIRELGEAF 835

Query: 657 KWFL--------KGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--G 704
            W+L        +  +     G    + IP    +A E  +   +    + +D  +I   
Sbjct: 836 AWYLIQVFIKKEQARRDARLNGKSFKIKIPAKVNEATELYKAQGNAIADYFNDKFEISDD 895

Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
           +N         + +  +  Q  +     I  +       Q
Sbjct: 896 DNDTINIKLYYQDFLLWFSQTHSNKNVNIDKKKFMKLFVQ 935


>gi|163759247|ref|ZP_02166333.1| hypothetical protein HPDFL43_05765 [Hoeflea phototrophica DFL-43]
 gi|162283651|gb|EDQ33936.1| hypothetical protein HPDFL43_05765 [Hoeflea phototrophica DFL-43]
          Length = 607

 Score =  245 bits (626), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 146/445 (32%), Gaps = 44/445 (9%)

Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
             +   FL    ED+     + +   + +               V   + AK  A    A
Sbjct: 158 LDAGGQFLDKPDEDLGKAETKAKRMAEEAAKTWGKRRAARASFAVGSKNLAKMNAMLSCA 217

Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLET----------------------GQKVKPTKE 449
                   D  ++        +  +                            +   ++E
Sbjct: 218 APHIMRDPDDFNADRYSFATLNHTIKFGRRTVVVPAQSDAQEDGEEIRAVVDVRKGHSRE 277

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
             IT+     F       ++   ++       V         + L+G    Q+     G 
Sbjct: 278 DLITQLVPVEFDPDAACPKWEAFLTQMLPDPLVRKLVQIAFALGLVG-VTVQKLFFHYGS 336

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKS  M +I    G+  V     S I ++     G A+P + RL G R + + E   
Sbjct: 337 GANGKSVAMEVICRLLGSASVTLPATSFIGESN--TGGSASPDIARLYGRRFLRVKELPV 394

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
            +++    +K++TGG+ +TAR  +   Y +    FTP +  N +  +   D+  WRR  V
Sbjct: 395 GEDLKENLVKEVTGGEAITARDLH-QGYFDFDPLFTPHMSGNGYPRITGMDNGIWRRMCV 453

Query: 630 IPFDKPIANRDASFAQK---LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
           + +   ++       +               W + G++ ++ +GL   IP+   +A ++ 
Sbjct: 454 VHWPVQLSADQQRDFEDVMGEFETEFPGILNWLIDGMRMFLEEGL--VIPDAVARATQDY 511

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   D   A+   C  I       +     +Y  Y   +     K IS     L +K+K 
Sbjct: 512 RDEMDPTAAFCAACVRIAPGERLTAKDFYHAYVNYTVDQGG---KPISLTRFGLIMKRK- 567

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKL 771
                     E+E        G+ L
Sbjct: 568 ---------FEREEGRTNHYLGVAL 583


>gi|126727691|ref|ZP_01743523.1| hypothetical protein RB2150_15970 [Rhodobacterales bacterium
           HTCC2150]
 gi|126703107|gb|EBA02208.1| hypothetical protein RB2150_15970 [Rhodobacterales bacterium
           HTCC2150]
          Length = 598

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 126/356 (35%), Gaps = 31/356 (8%)

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE--- 481
               +   +G  +L         +E Y T      +     +  F   +   F  +E   
Sbjct: 266 DPETVNCLNG--ELTLDGLRPHCREHYRTTQIPVEYDPEAKAPMFEAFLDQVFREDEDRA 323

Query: 482 -VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
             +      +G +L+   + + F+ + G G +GKS L+ +++   G   V   + S+   
Sbjct: 324 DKIRTVLELMGYSLMSHARHELFLMLIGPGANGKSVLLGVLEGLLGAANVAGVQPSNFDN 383

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
                          L      I++E  + + I  A++K +T G+  T    + N +   
Sbjct: 384 ---------RFQRAHLHQKLANIVTELRQGEVIADAELKAITSGEPATVEHKFQNPFV-M 433

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKW 658
               T +   N     R+  DA +RR  ++ F++  A   +D     KL           
Sbjct: 434 RPFATCWFGTNHMPHTRDFSDALFRRATILKFNRTFAEHEQDPMLKIKL-LNELPGILNL 492

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
            L         G     P+  ++AK+E +   D    ++DD CD   N       L K Y
Sbjct: 493 ALDAYIVTTFAG--FTAPQSSIEAKQEWKLEADQVAQFVDDACDADPNGEVPIGHLYKFY 550

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
            ++ +       + ++ + +   L   GF G        +     R + GL+LKP 
Sbjct: 551 GQWADDVG--ISRTVTMKILRDRLTTLGFGG--------RRTGKARFVTGLRLKPG 596


>gi|124516082|gb|EAY57591.1| Phage/plasmid primase P4 [Leptospirillum rubarum]
          Length = 730

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 152/434 (35%), Gaps = 32/434 (7%)

Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
              + +           K   F  +E     + +    R             +++  +  
Sbjct: 318 GVAEALDDGSNLIFAQSKFWAFSETEGIWRESPDESVKRAIQIVCRENGLPVKDNFIRGA 377

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEG 463
             S +A     +  D +D  S  +G  +G+L    G        +E Y        +   
Sbjct: 378 FNSAKARFFRDVQFDQIDKRS--IGAANGVLRYIDGGWSLTPYRREDYRRIRLPVTYDAE 435

Query: 464 EPSQEFLDLVSGYF---ESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
                F   +S  F     ++         +G++L    + ++ + + G GG+GKS L+ 
Sbjct: 436 AKCPRFEQFLSEVFDGSPDKKERALSVIEFLGLSLTATTEYEKALLLVGKGGNGKSVLLR 495

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
           +++   G +   + +   +                 L G  + I+SE +E  E+  A+IK
Sbjct: 496 VLESLIGARNRSSVQLKQLEN---------RFQRAHLDGKLVNIMSELSEGGEVPDAEIK 546

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638
            +  G+ +TA       + E       +I  N    VR+  D  +RR+I++ F     + 
Sbjct: 547 SIISGEPITAEHKLKPPF-EFFPVCKLWIATNHMPSVRDLSDGLFRRFIILNFPNRFDDK 605

Query: 639 --RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
             RD   ++KL          + LK +     +G  +  P   L+A +  ++ +D    +
Sbjct: 606 PSRDTKLSEKL-AAEASGILNYCLKALAGVYERG-ALTEPTSSLEAVQGWKRDSDQTSQF 663

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
           ++D   +       S      Y E+ ++     ++ +  ++ T  L   G          
Sbjct: 664 LEDEMILEPGASISSSEAYHRYVEWAKEVG--IKRTLGRKSFTERLMNHGVEPA------ 715

Query: 757 EKEWKSKRIIKGLK 770
            K     R++ GL+
Sbjct: 716 -KGTGGVRLLWGLR 728


>gi|300023255|ref|YP_003755866.1| phage/plasmid primase, P4 family [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525076|gb|ADJ23545.1| phage/plasmid primase, P4 family [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 401

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 83/412 (20%), Positives = 140/412 (33%), Gaps = 35/412 (8%)

Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
            E +   +    +       A K +            +     +    +A     F+ Y 
Sbjct: 21  HEADAAPRISKSERPPENTLADKVAVIRPRENSAVSQLDVDRPSGFSDEALALD-FAHYH 79

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
           +    Y A    W         +WS T  +   ++M F     + V  +  +        
Sbjct: 80  RDDLRYVA---IW-----GKWLLWSGTQWRADDTLMAF-----DLVRHVCRDAAAR---- 122

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
                   T+     +       +  +  +A    + TSD  D+ +  L    G++DL T
Sbjct: 123 ------CKTERLSTTIASAKTVAAVERLAKADRRLAATSDQWDADAWALNTPAGLVDLRT 176

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNK 499
           G         Y T+ T      G     F D ++      +E+  +  R  G AL G  +
Sbjct: 177 GILKPSLPSDYNTRLTTVA--PGGSCPIFRDFLNRITGGDKELQKFLQRAFGYALTGSVQ 234

Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
               +   G G +GKS L+  I    G+ +      +           +    L  L G+
Sbjct: 235 EHALLFFYGTGANGKSVLLKTISDILGDYHQQAPIETFTA----SIHQRHETELAALRGA 290

Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
           R+V   ET E      A+IK +TGGD ++AR      Y +    F   I  N    +R  
Sbjct: 291 RLVTAVETEEGRRWAEARIKTLTGGDKISARFM-RQDYFQFDPQFKLVIAGNHKPGLRTV 349

Query: 620 DDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
           D+A  RR+ ++PF   I    RD     KL+        KW ++G   +  +
Sbjct: 350 DEAIRRRFHLVPFAVTIPPAERDPDLTTKLQ-SEWPGILKWMIEGCLEWQRR 400


>gi|313895604|ref|ZP_07829160.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975730|gb|EFR41189.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 830

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 68/441 (15%), Positives = 153/441 (34%), Gaps = 28/441 (6%)

Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEE--PEDNNKNSKSPRFWFNTDYRRQNVEE 398
            Y  + +  +    ++   ++  + VF  +E+          + P        + + +  
Sbjct: 403 WYEPTKSGLRFLPGVLAKEMAGAQQVFYAAEQHFCYRAGVYHEMPEMEAQRMVQEKLLLR 462

Query: 399 NSKAKSTAQSLEA-GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
            S+ +    + +    +       L+++S  +  ++G+ ++        T +   T    
Sbjct: 463 ESRMRHIVDAEKQWRLLVQRDVRELNANSFIINVKNGLYNVLEDTLSVHTPDYCSTVQLN 522

Query: 458 TPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
             + +G     F   ++         +      +G  L+  N AQ+   I GV  +GKS 
Sbjct: 523 VAYDKGADCPRFKQFLAESMGGDMAQVALLQEMLGYFLIPVNSAQKCFVIVGVASAGKSV 582

Query: 517 LMNLIKY-AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
           L+ ++     G Q V N            +A         L G    I ++    +  + 
Sbjct: 583 LLRVLNDVLLGKQNVSNVS---------WQALNERFKTAELFGKLANIFADLPTKNIDDN 633

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF-VRNPDDAWWRRYIVIPFDK 634
              K + G D +T      N +S   ++       N       +  + ++RR I++ F+ 
Sbjct: 634 GIFKALVGEDYLTVEKKNKNPFS-FQSTARLLFSCNSIPKNYGDKSEGFYRRLIIVRFNH 692

Query: 635 PIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
            +    RD    +K           + L+G++  +         E      ++ R+ +D+
Sbjct: 693 SVPKEKRDPELLEK-FRAEADGIFLFALQGLRRLMGNHYVFSETEKNRTELQQYREESDS 751

Query: 693 YQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
             +++ + C +    +    S  L  +Y  Y E+      K  S +T    +        
Sbjct: 752 VLSFVKEHCIVLSEGDGCVGSTELWSAYKGYCEECG---LKPYSQKTFVQQIMTAFPHLE 808

Query: 751 IKREKIEKEWKSKRIIKGLKL 771
            K ++I K     R++ G+KL
Sbjct: 809 RKIDRIAKR----RVLVGIKL 825


>gi|162452338|ref|YP_001614705.1| hypothetical protein sce4063 [Sorangium cellulosum 'So ce 56']
 gi|161162920|emb|CAN94225.1| phage-related protein [Sorangium cellulosum 'So ce 56']
          Length = 458

 Score =  244 bits (622), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 126/365 (34%), Gaps = 16/365 (4%)

Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT-LDKITASIMNFLVSMK 363
           +  SD  N             +      W+    +       T  +    +    L   +
Sbjct: 98  ASDSDLANAERLVALYGPDLRHVEALGGWHTWAGSRWCCDRATVAELAKETTRRLLTDAE 157

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDY------RRQNVEENSKAKSTAQSLEAGSIFSI 417
             +   ++  +  + + +  +               +  +      +  +  E   I   
Sbjct: 158 FAMNHAAKRVKRAHDDDEVAKAKAQHKEATALFNWAKRSQSARGIDAMLRLAETEPIVRA 217

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
                D+    L  ++G+LDL TG+     +   + +     F        +   ++   
Sbjct: 218 EPGDFDADPWLLNCRNGVLDLRTGELRDHDRRDMMRRIVPVAFDPDAELPVWDRFLADVT 277

Query: 478 E-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
              EE++ +  R  G  L G  + +    + G   SGKST +  +K   G         +
Sbjct: 278 GNDEELIGFLRRAAGYTLTGDVRHEVLFFVHGPPASGKSTFLEALKITMGEYAAKADFET 337

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
            I +    ++G     + RL G+R+V+  E +E   +    +KQ+TGGD +TAR  Y  +
Sbjct: 338 FIARR---DSGGPRNDIARLAGARLVLSIEVDEGKRLAEGLVKQLTGGDTVTARFLYRES 394

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY--T 652
           + E   +F  ++  N    VR+ D A WRR + IPF+  +    RD      L       
Sbjct: 395 F-EFKPAFKLWLAANDAPRVRDDDAAIWRRILRIPFEHTVPKEKRDPQVKAALLDPAVGG 453

Query: 653 LEAKK 657
                
Sbjct: 454 PAILA 458


>gi|169346926|ref|ZP_02865874.1| putative phage [Clostridium perfringens C str. JGS1495]
 gi|169296985|gb|EDS79109.1| putative phage [Clostridium perfringens C str. JGS1495]
          Length = 927

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 59/383 (15%), Positives = 131/383 (34%), Gaps = 28/383 (7%)

Query: 396 VEENSKAKSTAQSLEAGSIFSITSD--LLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
           +  N    ++ +         ++ D    + +   +  ++G+LD+      + T     T
Sbjct: 560 MLPNYCIMASIRDCREQWDILVSKDFDDFNRNPYLVNVRNGLLDIRDMSFKEHTPSYLST 619

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
                 +       +F   ++      +++      VG  L     +Q+     G   +G
Sbjct: 620 VQLNVEYNPQVDCPQFKKFLNEVL-DCKLIPLVQEIVGYLLTTNTASQKAFVFWGPARTG 678

Query: 514 KSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
           KSTL+ +++Y   G + V N    +I                 L+G    + S+      
Sbjct: 679 KSTLLWVVEYLLLGKKNVSNIPWQEIGDK---------FKTAELLGKLANVFSDLPSKSI 729

Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIP 631
            +    K +TG D + A     N +             N+      +  + ++RR I++P
Sbjct: 730 DDTGIFKVVTGEDYLMAEKKNKNPFKF-KPFARLVFSCNELPRNYVDRTEGFYRRLIIVP 788

Query: 632 FDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
           F + I     D +   K +         W L+G+K       +    E+    K+E ++ 
Sbjct: 789 FSRQIEKSKIDKALKYKFQR-EKEGILNWALEGLKRLYENNFEFSENELTDGVKKEYKRE 847

Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
            +   +++++CC+I          + ++Y E+  +      K +S       L+      
Sbjct: 848 NNNVISFVEECCEIDSLFSCSRIEIYEAYKEFCVEAG---LKALSQIKFNKELEGN---- 900

Query: 750 GIKREKIEKEWKSKRIIKGLKLK 772
                         R+  G+++K
Sbjct: 901 ---FNITRSRSGKLRLWNGVRIK 920


>gi|229890279|sp|P0C9X2|H962R_ASFK5 RecName: Full=Putative helicase C962R
          Length = 962

 Score =  242 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 102/727 (14%), Positives = 223/727 (30%), Gaps = 88/727 (12%)

Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS 194
            + Y       K Y   T          P           + +  ++   + +++  +  
Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIESYNLVSELSLTNEQGSLVR 267

Query: 195 KTWTNNNNRQYTNREITA-------------------FLSCFGEEFYNGSHDEWIPVVMA 235
             +   +       EI A                    +       Y   +  W  VV A
Sbjct: 268 PVYCAADIAAEKEEEIPADDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327

Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288
           + +    S+  + +A  +S++    ++   +E     W+           K+        
Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEKLWNDASHHTEKKITKRSIMYWAHK 384

Query: 289 SLFYHHGKLIPKGLLA----------SRFSDAY-NKAMFSIYKKGHFLYTADTKA--WYK 335
                + +++ +G  +                   K ++++      +         W++
Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGTLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444

Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
                  +    + K             I+ +    +  + E +     +P + N  +  
Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440
            +     +  +  +  +S  K   +  E           LD++   LG  +G+L +E   
Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496
            + +    E  I + T   +V   P   +    L+ +       +   +    +  A+  
Sbjct: 565 AKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
           G K    +   G G +GK+ LM L+    G+ Y      S +   R   A K N + +RL
Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSYR-ETAEKPNSAFMRL 683

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
            G       ETN+++ +N +++K+M     +TAR       S    + T     N +  +
Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742

Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660
              D   WRR       + F              D  F  +                +F 
Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFW 802

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718
           + ++   +  +            E  R+  DT   +I +      +         +  +Y
Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETVYNLSEVVTAY 862

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
           +E+    +N  R       + L L Q+     +  + ++      RI+KG ++   FE++
Sbjct: 863 AEWYNANINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915

Query: 779 DDNSNII 785
               + I
Sbjct: 916 QPGESYI 922


>gi|9628179|ref|NP_042765.1| pC962R [African swine fever virus]
 gi|82051501|sp|Q65162|H962R_ASFB7 RecName: Full=Putative helicase C962R
 gi|780441|gb|AAA65301.1| pC962R [African swine fever virus]
 gi|162849281|emb|CAN10171.1| pC962R [African swine fever virus Benin 97/1]
 gi|1097461|prf||2113434BY C962R gene
          Length = 962

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 100/727 (13%), Positives = 223/727 (30%), Gaps = 88/727 (12%)

Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQ----EITVPLVKDKK 189
            + Y       K Y   T          P  +    ++ +  +       +T       +
Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIESYNLVSELSLTNEQGSLVR 267

Query: 190 SIIPSKTWTNNNNRQYTNRE--------------ITAFLSCFGEEFYNGSHDEWIPVVMA 235
            +  +         +    +                  +       Y   +  W  VV A
Sbjct: 268 PVYCAADIAAEKEEEIPTDDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327

Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288
           + +    S+  + +A  +S++    ++   +E     W+           K+        
Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEKLWNDASRHTEKKITKRSIMYWAHK 384

Query: 289 SLFYHHGKLIPKGLLA------SRFS-----DAYNKAMFSIYKKGHFLYTADTKA--WYK 335
                + +++ +G  +        ++         K ++++      +         W++
Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444

Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
                  +    + K             I+ +    +  + E +     +P + N  +  
Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440
            +     +  +  +  +S  K   +  E           LD++   LG  +G+L +E   
Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496
            + +    E  I + T   +V   P   +    L+ +       +   +    +  A+  
Sbjct: 565 AKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
           G K    +   G G +GK+ LM L+    G+ Y      S +   R   A K N + +RL
Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCR-ETAEKPNSAFMRL 683

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
            G       ETN+++ +N +++K+M     +TAR       S    + T     N +  +
Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742

Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660
              D   WRR       + F              D  F  +                +F 
Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPGNPYEKKEDPRFIHEYIMDPDCQNAFFSILVYFW 802

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718
           + ++   +  +            E  R+  DT   +I +      +         +  +Y
Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETVYNLSEVVTAY 862

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
           +E+    +N  R       + L L Q+     +  + ++      RI+KG ++   FE++
Sbjct: 863 AEWYNANINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915

Query: 779 DDNSNII 785
               + I
Sbjct: 916 QPGESYI 922


>gi|242279615|ref|YP_002991744.1| P4 family phage/plasmid primase [Desulfovibrio salexigens DSM 2638]
 gi|242122509|gb|ACS80205.1| phage/plasmid primase, P4 family [Desulfovibrio salexigens DSM
           2638]
          Length = 788

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 127/359 (35%), Gaps = 24/359 (6%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG--EPSQEFLDLVSGYFESE 480
           D     +  Q+G+L+L+T +      + + T      F        + +   +    ++ 
Sbjct: 446 DRDEW-VCLQNGMLNLKTLELKPHEHDYFSTICLNVSFDPDSEARCERWEKFLQQTVQTP 504

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           E +       G+ L    + ++ + + G G  GKSTL+ +++              D+  
Sbjct: 505 EPIAQLQEFAGLCLTRDTRFEKCLLLLGPGSDGKSTLLKVLRELVCAANCSAVAFQDLED 564

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
                          L    + I +E   +  +     K +  GD +     + +++ E 
Sbjct: 565 QFRR---------ASLYNKLLNISTEIG-SAAMETPIFKAVVSGDAIQGAFKHKDSF-EF 613

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYTLEAK 656
                     NK   V +  D ++RR + I F K       +R+    ++L      E  
Sbjct: 614 TPFCKLAFAANKLPRVLDNTDGFFRRMLPIEFKKQFLEDDPDRNPHLFEELIEHELSEIF 673

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
            W L G+     +G      +   +   + R+  +  QA+++D C++ +   +   SL K
Sbjct: 674 HWALVGLHRLYEQG-KFTSCDETRELLMDYRRLNNPVQAFVEDKCELEDGAKQSKDSLYK 732

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
           SY EY  +      + +        L     +  +K  +     K  R++ G+K K   
Sbjct: 733 SYREYSSENG---YQAMHKENFFRELYAA--VKTLKETRPSINGKRCRMVAGIKTKFEL 786


>gi|162849454|emb|CAN10420.1| pC962R [African swine fever virus OURT 88/3]
          Length = 962

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 100/727 (13%), Positives = 223/727 (30%), Gaps = 88/727 (12%)

Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQ----EITVPLVKDKK 189
            + Y       K Y   T          P  +    ++ +  +       +T       +
Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIESYNLVSELSLTNEQGSLVR 267

Query: 190 SIIPSKTWTNNNNRQYTNRE--------------ITAFLSCFGEEFYNGSHDEWIPVVMA 235
            +  +         +    +                  +       Y   +  W  VV A
Sbjct: 268 PVYCAADIAAEKEEEIPTDDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327

Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288
           + +    S+  + +A  +S++    ++   +E     W+           K+        
Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEKLWNDASRHTEKKITKRSIMYWAHK 384

Query: 289 SLFYHHGKLIPKGLLA------SRFS-----DAYNKAMFSIYKKGHFLYTADTKA--WYK 335
                + +++ +G  +        ++         K ++++      +         W++
Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444

Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
                  +    + K             I+ +    +  + E +     +P + N  +  
Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440
            +     +  +  +  +S  K   +  E           LD++   LG  +G+L +E   
Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496
            + +    E  I + T   +V   P   +    L+ +       +   +    +  A+  
Sbjct: 565 AKLINHFHEHPIHQYTRICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
           G K    +   G G +GK+ LM L+    G+ Y      S +   R   A K N + +RL
Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCR-ETAEKPNSAFMRL 683

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
            G       ETN+++ +N +++K+M     +TAR       S    + T     N +  +
Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742

Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660
              D   WRR       + F              D  F  +                +F 
Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPGNPYEKKEDPRFIHEYIMDPDCQNAFFSILVYFW 802

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718
           + ++   +  +            E  R+  DT   +I +      +         +  +Y
Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETVYNLSEVVTAY 862

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
           +E+    +N  R       + L L Q+     +  + ++      RI+KG ++   FE++
Sbjct: 863 AEWYNANINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915

Query: 779 DDNSNII 785
               + I
Sbjct: 916 QPGESYI 922


>gi|303326922|ref|ZP_07357364.1| phage/plasmid primase, P4 family [Desulfovibrio sp. 3_1_syn3]
 gi|302862910|gb|EFL85842.1| phage/plasmid primase, P4 family [Desulfovibrio sp. 3_1_syn3]
          Length = 540

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 82/504 (16%), Positives = 174/504 (34%), Gaps = 43/504 (8%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS-LTLDKITASIMNFLVSMKEDV 366
           +   +  ++    +   +Y    + +     ++          +    +    + + E  
Sbjct: 49  NRVGDAKLYCRLHRDTVIYVKYWERFLIWGGHHWIEDDYEAAFQRIEEVCELYLRLAEHK 108

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE--NSKAKSTAQSLEAGSIFSITSDLLDS 424
              ++E +   ++    +   +   RR N+    N + K             +    +D 
Sbjct: 109 QTEADEADK--EDKPKIQSLVDAALRRVNLLRDTNGQEKLMLMVRRIRDPLVVLPKHIDQ 166

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-----GEPSQEFLDLVSGYF-E 478
                   +G++DL TG+      E YI  +  T +        +P  E    +      
Sbjct: 167 RHYVKACPNGVIDLRTGELRPGRPEEYILNAIVTEYDPALLEQDDPCPETNKFLLSSMDG 226

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASD 537
            +E++D+  R +G  L+   +   F    G  G +GK TL+ L+ +  G     +     
Sbjct: 227 DQELVDFIWRLLGYGLVTERRDHIFTIFWGEHGRNGKDTLIKLVTHVLGQTLSGDVPVEM 286

Query: 538 IMQ-NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
            +Q  +   +   +P ++ L G  +  I+E  E      AK+K++TGG  +TAR      
Sbjct: 287 FLQMQQTRNSSAPSPDVLALRGMCLAWINEAEEGQRFALAKLKKLTGGGYVTARGLQDKQ 346

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---------DASFAQKL 647
            +    +  P +  N+    +  D A+W R +++ +                D    +K+
Sbjct: 347 QTTWLQTHLPIMTTNELPKAKADDAAFWARAVLVKWPLSFVEEPQQPYERPADKDLNEKI 406

Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN- 706
                       ++G   Y+  GL   IP+       E+R   D    +I D C+   + 
Sbjct: 407 C-AEAKGVLARMVRGCMEYLRDGLK--IPDKVKNWTREQRASWDDVGLFITDWCEQESHQ 463

Query: 707 -------LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
                      S  L +++  +  +  +  R  IS +     L +K     I  ++    
Sbjct: 464 DNPDAYATRISSTDLHEAFCIWYARNRD-KRFSISAKKFAEMLNKKD----IPYKRSNGS 518

Query: 760 WKSKRIIKGLKLKPAFESVDDNSN 783
           W+      G++L    E+   +  
Sbjct: 519 WR-----LGIRLNAEGENALADYR 537


>gi|206601900|gb|EDZ38382.1| DNA primase [Leptospirillum sp. Group II '5-way CG']
          Length = 717

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 69/434 (15%), Positives = 153/434 (35%), Gaps = 32/434 (7%)

Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
              + +           K   F  +E     +      R           + +++  +  
Sbjct: 305 GVAEALDDGSNLIFAQSKFWAFSETEGIWRESPEESVKRAIQIVCRENGLLVKDNFVRGA 364

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEG 463
             S +A     +  D +D  S  +G  +G+L    G        +E Y        +   
Sbjct: 365 FNSAKARFFRDVQFDQIDKRS--IGAANGVLRYIDGGWSLTPYRREDYRRIRLPVTYDPK 422

Query: 464 EPSQEFLDLVSGYF-ESEEVMD---YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
                F   +S  F  + +  +        +G+++    + ++ + + G GG+GKS L+ 
Sbjct: 423 AKCPRFEQFLSEVFDGTPDKRERGLTVLEFLGLSMTATTEYEKALLLVGKGGNGKSVLLR 482

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
           +++   G +   + +   +                 L G  + I+SE +E  E+  A+IK
Sbjct: 483 VLESLIGGKNRSSVQLKQLEN---------RFQRAHLDGKLVNIMSELSEGGEVPDAEIK 533

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638
            +  G+ +TA     + + E       +I  N    VR+  D  +RR++++ F     + 
Sbjct: 534 AIISGEPITAEHKQKHPF-EFFPVCKLWIATNHMPSVRDLSDGLFRRFVILNFPNRFDDK 592

Query: 639 --RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
             RD   ++KL          + LK +     +   +  P   L+A +  ++ +D    +
Sbjct: 593 PSRDTKLSEKL-AAEASGILNYCLKALSGVYERE-SLTEPTSSLEAVQGWKRDSDQTSQF 650

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
           ++D   +       S      Y ++ ++     ++ +  ++ T  L   G          
Sbjct: 651 LEDEMILEPGASIASSEAYHLYVDWAKEVG--IKRTLGRKSFTERLVNHGVEPA------ 702

Query: 757 EKEWKSKRIIKGLK 770
            K     R++ GL+
Sbjct: 703 -KGPGGVRLLWGLR 715


>gi|229890280|sp|P0C9X3|H962R_ASFP4 RecName: Full=Putative helicase C962R
          Length = 962

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 100/727 (13%), Positives = 223/727 (30%), Gaps = 88/727 (12%)

Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQ----EITVPLVKDKK 189
            + Y       K Y   T          P  +    ++ +  +       +T       +
Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIESYNLVSELSLTNEQGSLVR 267

Query: 190 SIIPSKTWTNNNNRQYTNRE--------------ITAFLSCFGEEFYNGSHDEWIPVVMA 235
            +  +         +    +                  +       Y   +  W  VV A
Sbjct: 268 PVYCAADIAAEKEEEIPTEDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327

Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288
           + +    S+  + +A  +S++    ++   +E     W+           K+        
Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEQLWNDASRHTEKKITKRSIMYWAHK 384

Query: 289 SLFYHHGKLIPKGLLA------SRFS-----DAYNKAMFSIYKKGHFLYTADTKA--WYK 335
                + +++ +G  +        ++         K ++++      +         W++
Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGILEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444

Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
                  +    + K             I+ +    +  + E +     +P + N  +  
Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440
            +     +  +  +  +S  K   +  E           LD++   LG  +G+L +E   
Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496
            + +    E  I + T   +V   P   +    L+ +       +   +    +  A+  
Sbjct: 565 AKLINHFHEYPIHQYTHICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
           G K    +   G G +GK+ LM L+    G+ Y      S +   R   A K N + +RL
Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSYR-ETAEKPNSAFMRL 683

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
            G       ETN+++ +N +++K+M     +TAR       S    + T     N +  +
Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742

Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660
              D   WRR       + F              D  F  +                +F 
Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFW 802

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718
           + ++   +  +            E  R+  DT   +I +      +         +  +Y
Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERIVESPSAETVYNLSEVVTAY 862

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
           +E+    +N  R       + L L Q+     +  + ++      RI+KG ++   FE++
Sbjct: 863 AEWYNANINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915

Query: 779 DDNSNII 785
               + I
Sbjct: 916 QPGESYI 922


>gi|303398756|emb|CBW46737.1| C962R [African swine fever virus Georgia 2007/1]
          Length = 962

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 101/727 (13%), Positives = 224/727 (30%), Gaps = 88/727 (12%)

Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQ----EITVPLVKDKK 189
            + Y       K Y   T          P  +    ++ L  +       +T       +
Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNLESYNLVSELSLTNEQGSLVR 267

Query: 190 SIIPSKTWTNNNNRQYTNRE--------------ITAFLSCFGEEFYNGSHDEWIPVVMA 235
            +  +         +    +                  +       Y   +  W  VV A
Sbjct: 268 PVYCAADIAAEKEEEIPTEDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327

Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288
           + +    S+  + +A  +S++    ++   +E     W+           K+        
Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEKLWNDASHHTEKKITKRSIMYWAHK 384

Query: 289 SLFYHHGKLIPKGLLA------SRFS-----DAYNKAMFSIYKKGHFLYTADTKA--WYK 335
                + +++ +G  +        ++         K ++++      +         W++
Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444

Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
                  +    + K             I+ +    +  + E +     +P ++N  +  
Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHESNILNYY 504

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440
            +     +  +  +  +S  K   +  E           LD++   LG  +G+L +E   
Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496
            + +    E  I + T   +V   P   +    L+ +       +   +    +  A+  
Sbjct: 565 AKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
           G K    +   G G +GK+ LM L+    G+ Y      S +   R   A K N + +RL
Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCR-ETAEKPNSAFMRL 683

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
            G       ETN+++ +N +++K+M     +TAR       S    + T     N +  +
Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742

Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660
              D   WRR       + F              D  F  +                +F 
Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPSNPYEKKEDPRFIHEYIMDPDCQNAFFSILVYFW 802

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718
           + ++   +  +            E  R+  DT   +I +      +         +  +Y
Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETVYNLSEVVTAY 862

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
           +E+    +N  R       + L L Q+     +  + ++      RI+KG ++   FE++
Sbjct: 863 AEWYNTNINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915

Query: 779 DDNSNII 785
               + I
Sbjct: 916 QPGESYI 922


>gi|306826829|ref|ZP_07460130.1| virulence-associated protein E [Streptococcus pyogenes ATCC 10782]
 gi|304430992|gb|EFM34000.1| virulence-associated protein E [Streptococcus pyogenes ATCC 10782]
          Length = 794

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 79/527 (14%), Positives = 171/527 (32%), Gaps = 39/527 (7%)

Query: 270 DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329
           D F +   G      +   +          +    ++ +   NK   S           +
Sbjct: 286 DVFAYSHHGTDPVGDTLVNAYDLVRIHKFGEQDSEAKDNTPTNKLPSSKAMNAFVCDLPE 345

Query: 330 TKAWYKKD-----KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP-------EDNN 377
            K +   +        + +                V+       + +E        E   
Sbjct: 346 IKDYLMAEALGDFDEELPVEDDRSWLEIDERGEPEVNSYLLATQIIKEVPIYWDGFEFLR 405

Query: 378 KNSKS------PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLG 430
            ++K          +  +    + + + +K +  ++++ A    + +S++  +S    + 
Sbjct: 406 YDAKKGIWLPNAEEFIRSYISTKKLGKITKIRHISETIVAIKAQAFSSEVFTESDLNKIV 465

Query: 431 EQDGILDLETGQKV-KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
             +G+ DL       K   EL+   S    +      + F   +       E +D+    
Sbjct: 466 LANGVYDLRDNSFKTKFDPELHARSSHPVVYDPEAACETFEGFLRETVG-AENIDFIFEW 524

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
            G         Q+ + I G GG+GKSTL+N+++   G           +MQ R  + G  
Sbjct: 525 FGYNFYREYTIQKMLFIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG-- 582

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L        ++       + A +K +TG D + A                    
Sbjct: 583 ------LYRKTANFDTDAKPQYLADGATLKMLTGEDTIHADRKNKEP-INFYNYAKLSFA 635

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYIS 668
            N+   +R+      RR +++  DK +     A +                ++G++  +S
Sbjct: 636 MNELPPMRDFSGGLKRRMMILEMDKVLTQEVKAKYPLDKIMGEVPGIFNRAMEGLRKALS 695

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
           K  D  I +    + E+  +G D    +++D C++GE+       +  +Y  Y +     
Sbjct: 696 KR-DFSISDSMRSSVEKWEKGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQDSG-- 752

Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             K ++  + T  + +  F      +  +   K+ R   G +LK  F
Sbjct: 753 -YKPLARNSFTQRMNELNFEN----KNAKMGGKTVRCWIGFRLKGEF 794


>gi|229890281|sp|P0C9X1|H962R_ASFWA RecName: Full=Putative helicase C962R
          Length = 962

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 100/727 (13%), Positives = 223/727 (30%), Gaps = 88/727 (12%)

Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQ----EITVPLVKDKK 189
            + Y       K Y   T          P  +    ++ +  +       +T       +
Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIESYNLVSELSLTNEQGSLVR 267

Query: 190 SIIPSKTWTNNNNRQYTNRE--------------ITAFLSCFGEEFYNGSHDEWIPVVMA 235
            +  +         +    +                  +       Y   +  W  VV A
Sbjct: 268 PVYCAADIAAEKEEEIPTEDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327

Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288
           + +    S+  + +A  +S++    ++   +E     W+           K+        
Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEQLWNDASRHTEKKITKRSIMYWAHK 384

Query: 289 SLFYHHGKLIPKGLLA------SRFS-----DAYNKAMFSIYKKGHFLYTADTKA--WYK 335
                + +++ +G  +        ++         K ++++      +         W++
Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444

Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
                  +    + K             I+ +    +  + E +     +P + N  +  
Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440
            +     +  +  +  +S  K   +  E           LD++   LG  +G+L +E   
Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496
            + +    E  I + T   +V   P   +    L+ +       +   +    +  A+  
Sbjct: 565 AKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
           G K    +   G G +GK+ LM L+    G+ Y      S +   R   A K N + +RL
Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSYR-ETAEKPNSAFMRL 683

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
            G       ETN+++ +N +++K+M     +TAR       S    + T     N +  +
Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742

Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660
              D   WRR       + F              D  F  +                +F 
Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFW 802

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718
           + ++   +  +            E  R+  DT   +I +      +         +  +Y
Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERIVESPSAETVYNLSEVVTAY 862

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
           +E+    +N  R       + L L Q+     +  + ++      RI+KG ++   FE++
Sbjct: 863 AEWYNANINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915

Query: 779 DDNSNII 785
               + I
Sbjct: 916 QPGESYI 922


>gi|229890393|sp|Q8V9U4|H962R_ASFM2 RecName: Full=Putative helicase C962R
          Length = 962

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 100/727 (13%), Positives = 221/727 (30%), Gaps = 88/727 (12%)

Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS 194
            + Y       K Y   T          P           + +  ++   + +++  +  
Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIEAYNLVSELSLTNEQGSLVK 267

Query: 195 KTWTNNNNRQYTNREI-------------------TAFLSCFGEEFYNGSHDEWIPVVMA 235
             +   +       EI                      +       Y   +  W  VV A
Sbjct: 268 PVYCEADIAAEKEEEIPVDDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327

Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288
           + +    S+  + +A  +S++    ++   +E     W+           K+        
Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEKLWNDASRHTEKKITKRSIMYWAHK 384

Query: 289 SLFYHHGKLIPKGLLA----------SRFSDAY-NKAMFSIYKKGHFLYTADTKA--WYK 335
                + +++ +G  +                   K ++++      +         W++
Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGTLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444

Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
                  +    + K             I+ +    +  + E +     +P + N  +  
Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440
            +     +  +  +  +S  K   +  E           LD++   LG  +G+L +E   
Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496
            + +    E  I + T   +    P   +    L+ +       +   +    +  A+  
Sbjct: 565 AKLINHFHEHPIHQYTHICYEPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
           G K    +   G G +GK+ LM L+    G+ Y      S +   R   A K N + +RL
Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCR-ETAEKPNSAFMRL 683

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
            G       ETN+++ +N +++K+M     +TAR       S    + T     N +  +
Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742

Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660
              D   WRR       + F              D  F  +                +F 
Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFW 802

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718
           + ++   +  +            E  R+  DT   +I +      +         +  +Y
Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETVYNLSEVVTAY 862

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
           +E+    +N  R       + L L Q+     +  + ++      RI+KG ++   FE++
Sbjct: 863 AEWYNTNINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915

Query: 779 DDNSNII 785
               + I
Sbjct: 916 QPGESYI 922


>gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
 gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
          Length = 1564

 Score =  240 bits (612), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 113/847 (13%), Positives = 227/847 (26%), Gaps = 130/847 (15%)

Query: 6   WKEQAKQAIHNGFK-LIPLRLGDKRPQRLG--KWEEQLLSSEKIDKL----PACGFGFVC 58
           + E     +  G+  ++P+   DK P   G    + +     ++ +     P        
Sbjct: 9   YAEHVADYVQAGWPCVLPVPPRDKFPPPTGFTGADGKDTDVAQVVEFAGSHPHHSIALRM 68

Query: 59  GVGEQPLYAFDID-----SKDEKTANTFKDTFEILHGTPIVRI--------GQKPKILIP 105
                 +   D+D      K +  A+T     E L   P            G  P  ++ 
Sbjct: 69  ---PDGVIGIDVDQYVKKGKQKHGADTLAALVEKLGPLPPTWSSTARGDEHGPGPSRVLL 125

Query: 106 FRMNKEGIKKKKTTESTQGHLDI--LGCGQYFVAYNIHPKTKKEYTWTTPPH--RFKVED 161
           F++  +      T     G ++I         VA +I+P+T  +Y W         KV +
Sbjct: 126 FQVPAQRYITNLTAA-GTGDIEIIQRHHRYIVVAPSINPETGTQYQWYDETDQPSDKVPN 184

Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN-REITAFLSCFGEE 220
              L+E    +L    +  T                    +       +I        + 
Sbjct: 185 PLQLAELPAAWLAHLLEGATSAGPSAADPASGEALLEQLLDDWRPECADIYGARLNALDT 244

Query: 221 FYNGSHDEWIPVVMA-VHHETRGSS-----------KGKEIARRWSK---QGSTYDEENF 265
                       + A VHH  + ++           + + I    +    +G+ +D    
Sbjct: 245 LATADAGSRHDTMTARVHHLVQLAAQGHPGVAWAITELRVIWDNLTAGELRGNEFDRMLL 304

Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG------------------------ 301
                           +    +   F   G                              
Sbjct: 305 TSARKAVTVVGTVQNPRDPCVYDLAFMVSGAAPDDATGEPGTAVAPERRWSIREVIGAHA 364

Query: 302 -LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV-YIWSLTLDKITASIMNFL 359
               +       +A+          Y  DT  W  +  +       L+            
Sbjct: 365 FDPPAELDQPLAQAVLERTY-PVVRYAHDTGGWLLRLPDRWTLAGDLSQW---------- 413

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG-----SI 414
                 V  ++      N  ++          RR      + AK+ A  + A        
Sbjct: 414 -----SVAQVAGLLPIGNPEAEKGSDEHARSRRRARFNTQAGAKAIASKMAALVAAGTHP 468

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKP--------TKELYITKSTGTPFVEGEPS 466
            +I    LDS+   L       DL++     P                 T     E   +
Sbjct: 469 CAIDLGGLDSAPDILWAGGVPWDLKSCLPDAPVQSWVAAMDPA-TPHLHTAAVLPERRDT 527

Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
             +   ++  +   EV  +  R + +AL G    +    + G  G GK+ +++L+    G
Sbjct: 528 PLWDAFLAAVWPDPEVRAWAVRVLSIALTG-YPDRALPILIGDTGRGKTQVVSLLMSVLG 586

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
           +            +     A      +  L G R+  I E          ++KQ+TGG  
Sbjct: 587 SYAHAADPRLMGAEGAKAHAS----IVFALKGRRLSFIDEGPREGRWAQERLKQLTGGGE 642

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ- 645
           +TA     N       + T  +  N    +   D A   R  ++P      + D    + 
Sbjct: 643 LTANQMNQNP-ITFRPTHTLVLTTNDEPALT--DPAIRARARLLP-----CDGDPEAVRI 694

Query: 646 ----------KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV---CLKAKEEERQGTDT 692
                         +         +    +++++     +           E+     D 
Sbjct: 695 ARAAIGHTNSAAWREEAPGVLASMMAEAGSWLAEPTTAHVSAAPIHLRDMAEKVGAEQDP 754

Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
            + W+++  +  E     S  L +++     +         + +     L +  F   I+
Sbjct: 755 VRVWLEEETEPWE-AGTPSRELYQAFWSSCRRSGIRADVIPTEQRWGRALSR--FEVPIQ 811

Query: 753 REKIEKE 759
             K  K 
Sbjct: 812 HTKQGKR 818


>gi|311070553|ref|YP_003975476.1| P4 family phage/plasmid primase [Bacillus atrophaeus 1942]
 gi|310871070|gb|ADP34545.1| P4 family phage/plasmid primase [Bacillus atrophaeus 1942]
          Length = 608

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 60/446 (13%), Positives = 151/446 (33%), Gaps = 15/446 (3%)

Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388
           + + +   D    Y ++  +          + S K+    L        + S+       
Sbjct: 157 EERGFLYDDIKKRYHFNANIFAKHFLKRCHVRSTKDGRLFLYNRVGVYEELSEVNLRKII 216

Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
                +    + K+    + + A    +   + +++   F+  ++G+L+L T +  + + 
Sbjct: 217 RAVMHEGKCYSWKSTYETEIIRALQREAPIVEEMNTERNFINVKNGMLNLSTYRLHEHSP 276

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
           +   T      + E   + +F + +      + E++      +G  L G  KA++ ++  
Sbjct: 277 KYLSTVQIPIHYDENATASKFDEFMRDITLNNPELIAVHQELIGYWLTGETKAEKAVYYY 336

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G G +GKS L +++    G + V +   S        E+         ++G  + I +E 
Sbjct: 337 GSGANGKSVLASIVTELVGPENVSSVPLSKFNDQFGMES---------MIGKSLNISAEN 387

Query: 568 NENDE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
               + +     K +  GD +T  + Y               + N      +  + ++R+
Sbjct: 388 EMGGKALKTENFKAIVSGDNITINIKYR-PAVSYRPYCRLVFLVNNLPDSSDVTEGYFRK 446

Query: 627 YIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
            I++PF +     + +   +    K       W + G+K   S        +   + +  
Sbjct: 447 LIIVPFSRTFKKEERNVNLKDELLKELPGILNWAVLGLKRLRSNDYQFSACKAIEETERA 506

Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
                +  + +        +    +       YS++   +   D+   S +      K  
Sbjct: 507 YYDEQNPVKEFFHSHVVQEDGSRTKQSDFYSMYSQWLNVQGIDDKGTKSRQVFWRYFKV- 565

Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKL 771
             +     + ++K+ K      G+KL
Sbjct: 566 -ILDSENIQVVKKKVKGTVYYDGIKL 590


>gi|325842743|ref|ZP_08167778.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Turicibacter sp. HGF1]
 gi|325489543|gb|EGC91908.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Turicibacter sp. HGF1]
          Length = 570

 Score =  240 bits (611), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 127/368 (34%), Gaps = 25/368 (6%)

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478
           + ++  +R+L  ++GIL L   +  K +  +         +        FL  ++  F  
Sbjct: 215 EYVEEDTRYLNLKNGILRLSDLKLFKHSPSIITLSQLPVGYDLNAKCPNFLKYLNTVFEG 274

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             E +       G  L    K Q+F    G G +GKS L N+++   GN    ++    +
Sbjct: 275 DCERISLVQEVFGYCLTTDTKLQKFFIFYGNGSNGKSVLANIMRKVIGNDNCSSSTLEQL 334

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKIKQMTGGDCMTARLNYGNTY 597
            +    +          +   R+ I  E++ + + +N  ++K +TG D +     + N  
Sbjct: 335 SKQFGGQV---------IQDKRVNISGESDSSRNVLNTQQLKLITGEDMVQVESKFKNP- 384

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-----------RDASFAQK 646
                     ++ N +    +  D + RR + IPF+                +D     K
Sbjct: 385 IMIRPYVKLIVLSNHYPKTEDTSDGFLRRCLFIPFNMRFVEEGTKLKDKEAYKDKDLQSK 444

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           L+         W L+G +    +   +       +  ++     +  + +I D   +   
Sbjct: 445 LD-SELDGIFMWALQGYQRLKDQNYVLTQCTASDRVLKDFMIYNNPVKEFIMDFLVVCPG 503

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
             E    +  +Y  + ++        IS +        +        +  +++    R I
Sbjct: 504 NRELKTDIYDAYQGWCKRNNVRSGLNISAKEFWGEF-ARSITVFTNYQYQQQKSNGDRYI 562

Query: 767 KGLKLKPA 774
             LK+K A
Sbjct: 563 CNLKIKGA 570


>gi|291437234|ref|ZP_06576624.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340129|gb|EFE67085.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 527

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 62/446 (13%), Positives = 143/446 (32%), Gaps = 25/446 (5%)

Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
           ++ + +   W+ T  +        + +   +  + +             R W  T  +  
Sbjct: 92  RRWRGSWMRWTGTCWREWDE--AQMRAYMYERLEHATFSTPGKDGQPEVRDWAPTKQKIS 149

Query: 395 NVEENSKAKSTA--QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
           N+ +   A +     +     I    +   D S   +  ++G+L +     +      + 
Sbjct: 150 NLLDALGAVTLLPTDTDAPAWIDDDRASEQDRSP-IVACRNGLLRIRDRALLPHGPGFFN 208

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
             S    +     +  +   +   +    + +       G  L G    Q+ + I G   
Sbjct: 209 IVSVPFAYDPEATAPTWERFLRQIWPNDPDAIQALQEWFGYVLSGRTDQQKILLIVGPSR 268

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           SGK T+  ++K   G + +     + +           N  L  L+G  + +IS+   + 
Sbjct: 269 SGKGTIARVLKELVGKENLAGPTLAGL---------GTNFGLSTLVGKPLAVISDARLSG 319

Query: 572 EINAA---KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
             N+    ++  ++G D +     Y   ++    +    I+ N+  +  +      RR++
Sbjct: 320 NDNSQVVERLLTISGEDTIDVDRKYREVWTGKLPT-RLMILSNELPYFGDSSGVIARRFV 378

Query: 629 VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           V+        ++ +               W L G+    + G  +  P    +A    + 
Sbjct: 379 VLNMTVSWLGKEDTTLTDRLAAEMPGILNWALDGLARLETTG-RITEPACSREAVTTMQD 437

Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
                 A+I +CC  G        +L   + E+ E      R   + +    NL     +
Sbjct: 438 TASPTSAFIRECCITGPTCSVPVDTLWAVWREWAEDNG--VRAVGTKQMFGRNL--LSVV 493

Query: 749 GGIKREKIE-KEWKSKRIIKGLKLKP 773
             + R +      +      G+ LKP
Sbjct: 494 PQLHRTRPRDAYGRQVATYNGIALKP 519


>gi|168211076|ref|ZP_02636701.1| phage/plasmid primase domain, P4 family [Clostridium perfringens B
           str. ATCC 3626]
 gi|170710872|gb|EDT23054.1| phage/plasmid primase domain, P4 family [Clostridium perfringens B
           str. ATCC 3626]
          Length = 995

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 59/383 (15%), Positives = 130/383 (33%), Gaps = 28/383 (7%)

Query: 396 VEENSKAKSTAQSLEAGSIFSITSD--LLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
           +  N    ++ +         ++ D    + +   +  ++G+LD+      + T     T
Sbjct: 628 MLPNYCIMASIRDCRDQWDILVSKDFDDFNRNPYLVNVRNGLLDIRDMSFKEHTPSYLST 687

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
                 +       +F   ++      +++      VG  L     +Q+     G   +G
Sbjct: 688 VQLNVEYNPQVDCPQFKKFLNEVL-DCKLIPLVQEIVGYLLTTNTASQKAFVFWGPARTG 746

Query: 514 KSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
           KSTL+ +++Y   G + V N    +I                 L+G    + S+      
Sbjct: 747 KSTLLWVVEYLLLGKKNVSNIPWQEIGDK---------FKTAELLGKLANVFSDLPSKSI 797

Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIP 631
            +    K +TG D + A     N +             N+      +  + ++RR I++P
Sbjct: 798 DDTGIFKVVTGEDYLMAEKKNKNPFKF-KPFARLVFSCNELPRNYVDRTEGFYRRLIIVP 856

Query: 632 FDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
           F + I     D +   K +         W L+G+K       +    E+    K+E ++ 
Sbjct: 857 FSRQIEKSKIDKALKYKFQR-EKEGILNWALEGLKRLYENNFEFSENELTDGVKKEYKRE 915

Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
            +   +++++CC+I          + ++Y E+  +      K +S       L+      
Sbjct: 916 NNNVISFVEECCEIDGLFSCSRIEIYEAYKEFCVEAG---LKALSQIKFNKELEGN---- 968

Query: 750 GIKREKIEKEWKSKRIIKGLKLK 772
                         R   G+++K
Sbjct: 969 ---FNITRSRSGKLRSWNGVRIK 988


>gi|239928907|ref|ZP_04685860.1| Phage/plasmid primase P4-like protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 469

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 62/446 (13%), Positives = 141/446 (31%), Gaps = 25/446 (5%)

Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
           ++ + +   W+ T  +        + +   +  + +             R W  T  +  
Sbjct: 34  RRWRGSWMRWTGTCWREWDE--AQMRAYMYERLEHATFSTPGKDGQPEVRDWAPTKQKIS 91

Query: 395 NVEENSKAKSTA--QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
           N+ +   A +     +     I    +   D S   +  ++G+L +     +      + 
Sbjct: 92  NLLDALGAVTLLPTDTDAPAWIDDDRASEQDRSP-IVACRNGLLRIRDRALLPHGPGFFN 150

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
             S    +     +  +   +   +    + +       G  L G    Q+ + I G   
Sbjct: 151 IVSVPFAYDPEATAPTWERFLRQIWPNDPDAIQALQEWFGYVLSGRTDQQKILLIVGPSR 210

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           SGK T+  ++K   G + +                   N  L  L+G  + +IS+   + 
Sbjct: 211 SGKGTIARVLKELVGKENLAGPTL---------AGLGTNFGLSTLVGKPLAVISDARLSG 261

Query: 572 EINAA---KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
             N+    ++  ++G D +     Y   ++    +    I+ N+  +  +      RR++
Sbjct: 262 NDNSQVVERLLTISGEDTIDVDRKYREVWTGKLPT-RLMILSNELPYFGDSSGVIARRFV 320

Query: 629 VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           V+        ++ +               W L G+    + G  +  P    +A    + 
Sbjct: 321 VLNMTVSWLGKEDTTLTDRLAAEMPGILNWALDGLARLETTG-RITEPACSREAVTTMQD 379

Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
                 A+I +CC  G        +L   + E+ E      R   + +    NL     +
Sbjct: 380 TASPTSAFIRECCITGPTCSVPVDTLWAVWREWAEDNG--VRAVGTKQMFGRNL--LSVV 435

Query: 749 GGIKREKIE-KEWKSKRIIKGLKLKP 773
             + R +      +      G+ LKP
Sbjct: 436 PQLHRTRPRDAYGRQVATYNGIALKP 461


>gi|158522921|ref|YP_001530791.1| P4 family phage/plasmid primase [Desulfococcus oleovorans Hxd3]
 gi|158511747|gb|ABW68714.1| phage/plasmid primase, P4 family [Desulfococcus oleovorans Hxd3]
          Length = 769

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 81/571 (14%), Positives = 162/571 (28%), Gaps = 65/571 (11%)

Query: 216 CFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE 275
              +   +    + I    A H+ +R  +   ++A   +     Y ++     ++ +   
Sbjct: 248 RIPDLRISDKMKDLILSGGAGHYSSRSEA---DMAVILALVSKGYSDDEIRSIFENYPRG 304

Query: 276 EIGDTAKKRSTF-TSLFYHHGKLIPKGLLASRFSDA------YNKAMFSIYKKGHFLY-- 326
                    S +         K     L     +D         K   + YK   F +  
Sbjct: 305 AKYLEHSDPSQYLNHNIKEAKK--ISNLTEEEMADPLFISGTITKNKNNEYKLDVFCFEE 362

Query: 327 --TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384
             +   +  Y  D+ + + ++    +                                  
Sbjct: 363 YFSKKHQLKYLADETSFFKYNGQCYEYI-------------------------NKDTLNA 397

Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444
                  R++ +       S            +++   D        Q+G+ DL+ G  V
Sbjct: 398 ECQKELGRKRKLFTTKDLSSFEHHCIGDPQCILSNANQDQVKYL-TLQNGLFDLDQGVLV 456

Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRF 503
             + + + T      + E      +L  +   F   ++ + +    +G   L        
Sbjct: 457 HHSPDTFTTNLLPYDYDELAQCPLWLKYLDDVFMGDQDKIMFAQEAIGYVFLKQIPTPAL 516

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
             ++G G +GKS  +N I   FG + V +       +               L G    I
Sbjct: 517 FFLKGTGSNGKSVFINTITNLFGEENVASISLGSFSKEYYTLG---------LFGKMANI 567

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
             E   N  ++   +K +  GD +  R  Y     +       FI  N+     +    W
Sbjct: 568 SGEAP-NKFLSTDVVKAIVSGDWVQGRDPYKRPT-KFRPYAKHFIAMNEEPATDDNSYGW 625

Query: 624 WRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
           WRR  V+ F++     +   F              W + G       G  +   E   +A
Sbjct: 626 WRRIYVLKFERTFHKHEMDVFLTDKLKNELSGIFNWAIAGYHRLKENGYILHTGESLEQA 685

Query: 683 KEEERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
           K   +   +   ++I   C      + +     L   Y  Y E         +S +    
Sbjct: 686 KYNYQCQNNNVISFIKKKCAKAQATDNYILFKDLYHLYCAYCESNGA---DVLSKKDFRK 742

Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
            L+  G+    K +   K   S   + G+ L
Sbjct: 743 TLENSGY----KVDNNTKASNSL-CVYGIAL 768


>gi|239908831|ref|YP_002955573.1| hypothetical protein DMR_41960 [Desulfovibrio magneticus RS-1]
 gi|239798698|dbj|BAH77687.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 478

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 162/435 (37%), Gaps = 29/435 (6%)

Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRF---------SDAYNKAMFSIYKKGHFLYTAD 329
           +    ++   S    + K        S F         ++  +   +    K  F Y   
Sbjct: 6   NNVSNKAILASSVKANKKNPKMTKNGSDFLDIDKLLQKNEVGDAGFYVEANKNKFCYDCS 65

Query: 330 TKAWYKKDKNNVYIW-SLTLDKITASIMNFLVSMKEDVFDLS-EEPEDNNKNSKS--PRF 385
            K WYK +  +  I    +  +  + +++    +K      + +E    N +        
Sbjct: 66  DKKWYKYNNTHWEIDVKNSYLEAVSKVVDAYEDIKSIFRAKAFKEMAFENSHGVKAVDAH 125

Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGS-IFSITSDLLDSSSRFLGEQDGILDLETGQKV 444
               D+R  ++    + +S      +G    +I  D  D+    L  Q+ ++DL+TG+ +
Sbjct: 126 LKKLDFRISSINTMKRMRSILTIAGSGENSLAIRGDEWDNKPMVLCCQNKVIDLKTGKSI 185

Query: 445 KPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQR 502
           K   + Y+       +      +  +   +   F+  +E++DY  R +G +L G      
Sbjct: 186 KSDPKDYLKSFAPVEWKGLSCKAPIWNKFLMSMFDNDKEMVDYVLRLLGYSLTGMCTEHI 245

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
                G G +GK TL  ++    G+     +    +   +P  +   +P ++ L G RI 
Sbjct: 246 LPIFYGEGRNGKGTLFEVLSEVLGSLAEPFSHDLLLKLKKPRNSSDPSPDIMDLRGRRIA 305

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
             SE ++++ +N A +K++TG D +  R  +G+       +   F++ NK     + D A
Sbjct: 306 WASEIDDSENLNPAIVKRLTGNDTLKGRHLFGDL-VSFKPTHQLFLLTNKKPKADSKDYA 364

Query: 623 WWRRYIVIPFDKPIAN---------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
            W R  ++  +    +         RD    +KL            ++G   +  +GL  
Sbjct: 365 LWSRIQLLKLNVKFVDNPSCDSERKRDNHLKEKL-LSEKSGILASLVRGCLQWQEQGLCP 423

Query: 674 DIPEVCLKAKEEERQ 688
             P+  L    E R+
Sbjct: 424 --PKKVLDDSLEYRK 436


>gi|71911262|ref|YP_282812.1| DNA primase [Streptococcus pyogenes MGAS5005]
 gi|94989081|ref|YP_597182.1| DNA primase [Streptococcus pyogenes MGAS9429]
 gi|94992972|ref|YP_601071.1| DNA primase [Streptococcus pyogenes MGAS2096]
 gi|71854044|gb|AAZ52067.1| DNA primase [Streptococcus pyogenes MGAS5005]
 gi|94542589|gb|ABF32638.1| DNA primase [Streptococcus pyogenes MGAS9429]
 gi|94546480|gb|ABF36527.1| DNA primase [Streptococcus pyogenes MGAS2096]
          Length = 794

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 70/448 (15%), Positives = 155/448 (34%), Gaps = 28/448 (6%)

Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS------PRFWFNTD 390
           D  +         +   +       + ++V    +  E    ++K          +  + 
Sbjct: 366 DDRSWLEIDE-RGEPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEYLKSY 424

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV-KPTK 448
              + + + +K +  ++++ A    + +S++  +S    +   +G+ DL       K   
Sbjct: 425 ISTKKLGKITKIRHISETVVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNNFKTKFDP 484

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
           EL+   S    +      + F   +       E +D+     G         Q+ + I G
Sbjct: 485 ELHARSSHPVVYDPEATCETFEGFLRETVG-AENIDFIFEWFGYNFYREYTIQKMLFIYG 543

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            GG+GKSTL+N+++   G           +MQ R  + G        L        ++  
Sbjct: 544 SGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFDTDAK 595

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
                + A +K +TG D + A                     N+   +R+      RR +
Sbjct: 596 PQYLADGAALKMLTGEDTIHADRKNKEP-INFYNYAKLSFAMNELPPMRDFSGGLKRRMM 654

Query: 629 VIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           ++  DK +     A +                ++G++  +SK  D  I      + E+  
Sbjct: 655 ILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRKALSKR-DFSISASMRSSVEKWE 713

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +G D    +++D C++GE+       +  +Y  Y +       K ++       L++  +
Sbjct: 714 KGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQDSG---YKPLAKNAFNHRLRELNY 770

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAF 775
                 + ++ + K  +   G +LK  F
Sbjct: 771 EN----KNVKSDGKQAKNWVGFRLKSEF 794


>gi|212702690|ref|ZP_03310818.1| hypothetical protein DESPIG_00718 [Desulfovibrio piger ATCC 29098]
 gi|212673850|gb|EEB34333.1| hypothetical protein DESPIG_00718 [Desulfovibrio piger ATCC 29098]
          Length = 540

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 85/514 (16%), Positives = 174/514 (33%), Gaps = 40/514 (7%)

Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS-LTLDKITASI 355
                L     +   +  ++S   +G  +Y      +     ++          +    +
Sbjct: 39  SNDDLLGYFNENRVGDAKLYSRLHRGTVIYVKYWDRFLIWGGHHWIEDDFDMAAQRIEDV 98

Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE-AGSI 414
               + + E     + E  D N+ +K          R   + +        Q L      
Sbjct: 99  CELYLRLAESKQAEAAEETDKNERAKIEGLASAVLRRVSQLRDTPGQDKLLQMLRRIRDP 158

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-----GEPSQEF 469
             +    +D         +G++DL TG+      + YI  +  T +        +P  E 
Sbjct: 159 LVVLPKQIDQQHYVKACPNGVIDLRTGELRPGRPDEYILNAIVTEYDPELLRKDDPCPET 218

Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGN 527
              +       +E++D+  R +G  L+   +   F  + G  G +GK TL+ L+ +  G 
Sbjct: 219 NRFLLSSMDGDQELVDFIWRLLGYGLITERRDHIFTIMWGEHGRNGKDTLIKLVTHVLGQ 278

Query: 528 QYVINAEASDIMQ-NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
               +      +Q  +   +   +P ++ L G  +  I+E  E      AK+K++TGG  
Sbjct: 279 TLSGDVPVEMFLQMQQTRNSSAPSPDVLALRGMCVAWINEAEEGQRFALAKLKKLTGGGY 338

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------- 639
           +TAR       +    +  P +  N+    +  D A+W R ++I +      R       
Sbjct: 339 ITARGLQDKLQTTWLQTHLPIMTTNELPKAKADDAAFWARAVLIKWPLSFVERPEQPYER 398

Query: 640 --DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
             D    +K+            ++G   Y+  GL   IP+   +   E+R   D    ++
Sbjct: 399 PADKDLNEKIG-AEAKGVLARMVRGSMEYLRDGLK--IPDKVREWTREQRASWDDVGLFL 455

Query: 698 DDCCDIGEN--------LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
            + C    +        L   +  L +++  +  +  +  R  IS +     L +K    
Sbjct: 456 SEWCISESHQANPANYTLKVNATDLHEAFCIWYARYRD-RRYSISAKKFAEALNKKD--- 511

Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
            I  ++    W+      G+ L        D+  
Sbjct: 512 -IAYKRSNGSWR-----LGIDLTDEARKELDSHR 539


>gi|91214217|ref|NP_919008.2| DR0530-like primase [Burkholderia phage BcepNazgul]
 gi|88604910|gb|AAQ63375.2| DR0530-like primase [Burkholderia phage BcepNazgul]
          Length = 843

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 106/722 (14%), Positives = 220/722 (30%), Gaps = 91/722 (12%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGF---------- 56
            +     I NG+ ++P+  G+K P     W++ + +  K+    A G  +          
Sbjct: 11  ADHGDALIANGYNIVPITPGEKFPPH-DGWQQTVATQAKLKTWLATGLKYTKNGEDRVAD 69

Query: 57  ----VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG 112
                 G   +     DID  DE  A   ++      G   VR+G+ P+ L+ FR  +  
Sbjct: 70  VKLAGVGFLTKNTPGVDIDISDEGFAKHMENFVHENFGMAPVRVGRAPRRLLLFRCTEPF 129

Query: 113 IKKKKTTESTQGH----LDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLS 166
            K   +    +      ++IL  GQ FVA++IHP TK+ Y W     P   +  + P+L 
Sbjct: 130 SKVNSSVYLDEWGEAQKVEILANGQQFVAFHIHPDTKRPYEWLYKQSPLDIEASELPVLR 189

Query: 167 EEDVEYLFKFFQEITVPLV---KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
             D + +   F++         K +    P ++ +                +  GE+  +
Sbjct: 190 RVDAQAIVDEFEKQAKLRGWTLKKRSRTAPERSESGGEIDYDDPFAADVAKTDIGEDELH 249

Query: 224 ---------GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF 274
                      ++ W+ V MA+ H+  G  +G E+   WS+    YD +  + KW +FD 
Sbjct: 250 AKLLLVPDADDYETWVNVGMALFHQYDGHERGLELWHEWSETADNYDAKELDAKWKSFDI 309

Query: 275 EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334
                T         L     +   +  + +           ++                
Sbjct: 310 SNKSRTPITARYIIKLAKEAAEKTAEETMVALQKLLLEATSMNML--NSACKAIKKATLD 367

Query: 335 KKDKNNVYIW-SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
           K  +  +  +      +I       L + ++ +   + E +   K      +    D   
Sbjct: 368 KPSRELMVTFVRQAFKRINDGSPLPLNAARQMIRFENPESKHMPKWLMGWTYLTLDDKFY 427

Query: 394 QNVEENSKAKSTAQSLEAGSIF------------SITSDLLDSSSRFLGEQ--------- 432
               +    +S   S     +               T++ L  +   +            
Sbjct: 428 NVNTQEYMTRSAFNSAFERFLLTPQDVLEGRVVPDTTAEKLALNRHQIPVCRTRLYLPEQ 487

Query: 433 ------DG--ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484
                 +G    +L T + V        +        +    +  LD  +    ++    
Sbjct: 488 DETFIMNGARYANLYTDKSVPECPSKLTS-------EDKLNVKRILDHFNMMIPADRERG 540

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
            F   +   +    +    I ++G    GK+   +++    G + V    A  +      
Sbjct: 541 IFIDWLAWIIQTQKRPNWAIVLQGTESDGKTFFSDMMGVILGPENVKTLNAKTLEGAFNG 600

Query: 545 EAGKA---NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
            A  +       I+L G         N+        IK +     +       + Y+   
Sbjct: 601 WAEGSLLNCVEEIKLHG--HNRFDVLNQ--------IKPLITNTAIEIHRKGVDPYNTIN 650

Query: 602 ASFTPFIVP--NKHLFVRNPDDAW--WRRYIVIPFDKPIANRDASFAQKLE--TKYTLEA 655
            +    +    +    VRN    +  + R       +   + +  +   L      +  A
Sbjct: 651 TAAYLLLTNFKDALPLVRNDTRYFVMFGRMQNREDVEKFKDENPHYYGNLFQALNESAGA 710

Query: 656 KK 657
            +
Sbjct: 711 LR 712


>gi|21910978|ref|NP_665246.1| putative DNA primase/helicase - phage associated [Streptococcus
           pyogenes MGAS315]
 gi|28876472|ref|NP_795676.1| putative DNA primase/helicase [Streptococcus pyogenes phage 315.6]
 gi|28895335|ref|NP_801685.1| DNA primase (phage associated) [Streptococcus pyogenes SSI-1]
 gi|50913381|ref|YP_059353.1| virulence-associated protein E [Streptococcus pyogenes MGAS10394]
 gi|21905186|gb|AAM80049.1| putative DNA primase/helicase - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|28810581|dbj|BAC63518.1| putative DNA primase (phage associated) [Streptococcus pyogenes
           SSI-1]
 gi|50902455|gb|AAT86170.1| virulence-associated protein E [Streptococcus pyogenes MGAS10394]
          Length = 794

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 70/448 (15%), Positives = 154/448 (34%), Gaps = 28/448 (6%)

Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS------PRFWFNTD 390
           D  +         +   +       + ++V    +  E    ++K          +  + 
Sbjct: 366 DDRSWLEIDE-RGEPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEYLKSY 424

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV-KPTK 448
              + + + +K +  ++++ A    + +S++  +S    +   +G+ DL       K   
Sbjct: 425 ISTKKLGKITKIRHISETIVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNSFKTKFDP 484

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
           E++   S    +      + F   +       E +D+     G         Q+ + I G
Sbjct: 485 EVHARSSHPVVYDPEATCETFEGFLRETVG-AENIDFIFEWFGYNFYREYTIQKMLFIYG 543

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            GG+GKSTL+N+++   G           +MQ R  + G        L        ++  
Sbjct: 544 SGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFDTDAK 595

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
                + A +K +TG D + A                     N+   +R+      RR +
Sbjct: 596 PQYLADGATLKMLTGEDTIHADRKNKEP-INFYNYAKLSFAMNELPPMRDFSGGLKRRMM 654

Query: 629 VIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           ++  DK +     A +                ++G++  +SK  D  I      + E+  
Sbjct: 655 ILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRKALSKR-DFSISASMRSSVEKWE 713

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +G D    +++D CD+ E+       +  +Y  Y +       K ++  + T  + +  F
Sbjct: 714 KGNDVVAMFLEDECDLSEDFKVPVRDVYPAYKFYCQDSG---YKPLARNSFTQRMNELNF 770

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAF 775
                 +  +   K+ R   G ++K  F
Sbjct: 771 EN----KNAKMGGKTVRCWIGFRIKGEF 794


>gi|282164445|ref|YP_003356830.1| hypothetical protein MCP_1775 [Methanocella paludicola SANAE]
 gi|282156759|dbj|BAI61847.1| hypothetical protein [Methanocella paludicola SANAE]
          Length = 439

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 143/424 (33%), Gaps = 21/424 (4%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
           ++++A     F  +      Y  +   +         +W+    ++     N    +   
Sbjct: 33  KYTEACMAHWFDFFYNKDVKYVVEDDRF--------LVWNGRYWELDDRNTNVRRLISLM 84

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
             +     E           +  T+       +N                 I  + LD +
Sbjct: 85  APEFQARTEHIKDEKARNAAFKYTNSLENTNRQNGIIIQLKSEATGLF---IKKNDLDKN 141

Query: 426 SRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
           SR +   +G+LDL+ G  +    TKE+Y T      +        F   ++    E  ++
Sbjct: 142 SRMINCLNGVLDLDKGTLIHHEQTKEMYFTHIYNVKYDPEAICPLFDKFLNEITCEDADL 201

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
             Y    +G  + G    Q     +G G +GK  L ++I++      +         ++ 
Sbjct: 202 KKYLLTSLGYCISGRTDKQLAFIFKGAGRNGKGVLRDVIEHILDGYAIEKPGKVFSKKHE 261

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
               G+    L   +  RI+ ++E  +    N A IKQ  GGD + A   Y + +     
Sbjct: 262 ----GEGRFDLYDTIEKRIIFVNEPADGSAFNEALIKQYAGGDMIPAERKYCDPFM-FKP 316

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLK 661
             T  I+ N    + N   A  RR  VIPF+  I +  D    +    K         ++
Sbjct: 317 CGTLIILTNTTPKM-NKSLAMSRRIRVIPFNLNIDDENDDVELKDKLLKEISGILNRLIE 375

Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
           G  +   +    ++ E    A E+     D   A+++ C    E    ++  +   + ++
Sbjct: 376 GYMSCDGEANPKNMVEAVADATEDVWNEADMVAAFVNTCIFRDEKSTMDNAVMYLEFKKF 435

Query: 722 REQE 725
              E
Sbjct: 436 CMNE 439


>gi|157311152|ref|YP_001469197.1| primase [Streptococcus phage P9]
 gi|119104301|gb|ABL61046.1| primase [Streptococcus phage P9]
          Length = 497

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 71/448 (15%), Positives = 155/448 (34%), Gaps = 28/448 (6%)

Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS------PRFWFNTD 390
           D  +         +   +       + ++V    +  E    ++K          +  + 
Sbjct: 69  DDRSWLEIDE-RGEPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEYLKSY 127

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV-KPTK 448
              + + + +K +  ++++ A    + +S++  +S    +   +G+ DL       K   
Sbjct: 128 ISTKKLGKITKIRHISETIVAIKAQAFSSEVFTESDLNKIVLVNGVYDLRDNSFKTKFDP 187

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
           EL+   S    +      + F   +       E +D+     G         Q+ + I G
Sbjct: 188 ELHARSSHPVAYAPEAACETFEGFLRETVG-AENIDFIFEWFGYNFYREYTIQKMLFIYG 246

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            GG+GKSTL+N+++   G           +MQ R  + G        L        ++  
Sbjct: 247 SGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFDTDAK 298

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
                + A +K +TG D + A                     N+   +R+      RR +
Sbjct: 299 PQYLADGATLKMLTGEDTIHADRKNKEP-INFYNYAKLSFAMNELPPMRDFSGGLKRRMM 357

Query: 629 VIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           ++  DK +     A +                ++G++  +SK  D  I      + E+  
Sbjct: 358 ILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRNALSKR-DFSISASMRSSVEKWE 416

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +G D    +++D C++GE+       +  +Y  Y +       K ++  + T  + +  F
Sbjct: 417 KGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQDSG---YKPLARNSFTQRMNELNF 473

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAF 775
                 +  +   K+ R   G ++K  F
Sbjct: 474 EN----KNAKMGGKTVRCWIGFRIKGEF 497


>gi|46580593|ref|YP_011401.1| primase [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450012|gb|AAS96661.1| primase, putative [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234328|gb|ADP87182.1| phage/plasmid primase, P4 family [Desulfovibrio vulgaris RCH1]
          Length = 830

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 64/479 (13%), Positives = 152/479 (31%), Gaps = 60/479 (12%)

Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
           +     + + + + Y         +    Y      +++W+    +I             
Sbjct: 398 ANGRFTFRERILADY------LCQENPMMYHDKSGQLFVWNGKHFEIY------------ 439

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
                         + +  R   N           +   S A ++ A          L+ 
Sbjct: 440 -------------SDEQLKRRAINALGEEATAARVASCSSLAMTMSAIPH----GRSLND 482

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG--EPSQEFLDLVSGYFESEEV 482
              +L  ++G+L++ T +     ++   T      +        + +L  ++   ++E  
Sbjct: 483 RDDWLCIENGMLNVTTLELAPHDRDYLATIMLPVRYDSETTPKPERWLTFLAETIQTEGP 542

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
           +      +G  L    K  + + + G G  GKS ++ +++   G         + +    
Sbjct: 543 IAQLQEFMGYCLTRQTKFDKCLLLLGPGSDGKSKVIKVLRAMVGEANCSAVSMTGLEDQF 602

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
              A         L G  + + +E      + +   K +  GD + A   + +++ E   
Sbjct: 603 QRSA---------LFGKLLNVGTEV-TTAALESEYFKAIVTGDPIQASFKHKDSF-EFTP 651

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE---TKYTLEAKKWF 659
                   NK   V +  D ++RR + I F +     D +    LE           +W 
Sbjct: 652 CVKLVYAANKLPRVMDNSDGYFRRILPIQFKRQFLENDPAMDPDLEGKLMAELDGIFEWA 711

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
           L G+   +++G    + +       + R+  +    ++ D C I +N   +   L   + 
Sbjct: 712 LVGLHRLLAQG-RFTMCDETRDILMDYRRFNNPVLGFVQDRCTITDNTRTDIKDLYADFK 770

Query: 720 EYREQELNYDRKRISTRTVTLNLK---QKGFIGGIKREKIEKEWKSKR--IIKGLKLKP 773
            Y  +      K+++       L+   +K       R    +     R  +++ + L P
Sbjct: 771 RYASENG---FKQLNRENFMRELETAARKVREDAAVRVTRPRAANGARPYLVENITLNP 826


>gi|225871340|ref|YP_002747287.1| phage DNA primase/helicase protein [Streptococcus equi subsp. equi
           4047]
 gi|225700744|emb|CAW95385.1| putative phage DNA primase/helicase protein [Streptococcus equi
           subsp. equi 4047]
          Length = 794

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 71/448 (15%), Positives = 154/448 (34%), Gaps = 28/448 (6%)

Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS------PRFWFNTD 390
           D  +         +   +       + ++V    +  E    ++K          +  + 
Sbjct: 366 DDRSWLEIDE-RGEPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEYLKSY 424

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV-KPTK 448
              + + + +K +  ++++ A    + +S++  +S    +   +G+ DL       K   
Sbjct: 425 ISTKKLGKITKIRHISETVVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNSFKTKFDP 484

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
           EL+   S    +      + F   +       E +D+     G         Q+ + I G
Sbjct: 485 ELHARSSHPVVYDPEAACETFEGFLRETVG-AENIDFIFEWFGYNFYREYAIQKMLFIYG 543

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            GG+GKSTL+N+++   G           +MQ R  + G        L        ++  
Sbjct: 544 SGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFDTDAK 595

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
                + A +K +TG D + A                     N+   +R+      RR +
Sbjct: 596 PQYLADGATLKMLTGEDTIHADRKNKEP-INFYNYAKLSFAMNELPPMRDFSGGLKRRMM 654

Query: 629 VIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           ++  DK +     A +                ++G++  +SK  D  I      + E+  
Sbjct: 655 ILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRKALSKR-DFSISASMRSSVEKWE 713

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +G D    +++D C++GE+       +  +Y  Y +       K ++       L++  +
Sbjct: 714 KGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQDSG---YKPLAKNAFNHRLRELSY 770

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAF 775
                 + ++   K  +   G KLK  F
Sbjct: 771 EN----KNVKSGGKQAKNWVGFKLKSEF 794


>gi|219855934|ref|YP_002473056.1| hypothetical protein CKR_2591 [Clostridium kluyveri NBRC 12016]
 gi|219569658|dbj|BAH07642.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 484

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 72/472 (15%), Positives = 156/472 (33%), Gaps = 32/472 (6%)

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP-EDNNKNS 380
            + LY              + I ++    +    MNF+   K  +++ +       ++++
Sbjct: 19  NNKLYDIHNNLLRSSKDPRINIENVK--NMIMKKMNFINMDKLRIYEFTAGCYRALSRDN 76

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE- 439
                        ++  E S  +   +++          +L+  +   +   +G+LD   
Sbjct: 77  TLIEINKYIPNNIRSFIEPSDLRKLYEAIRLEPSIQFNPELVPDNKYLINCHNGVLDFNT 136

Query: 440 ----TGQKVKPTKELYITKSTGTPFVEGEPSQE--FLDLVSGYF-ESEEVMDYFTRCVGM 492
                   +   +           +          F   +        +++      +G 
Sbjct: 137 LSNGKPIIMYHNEIYRFINCVQANYNPNYSINNSYFERFIVNITKGDNQLIILIQEILGY 196

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
                N A++   + G   SGKS  + +I    G + V N    ++   +          
Sbjct: 197 IFSNFNNAKKAFILFGESNSGKSVFLRVIASICGEENVSNVPLQNLSDEK---------Y 247

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPN 611
           + +L G  I I SE  + + I+ A  K +    D + AR  +   +S            N
Sbjct: 248 VAKLYGKLINIYSELPDKEIIDTATFKSLVSETDKVNARKLFKAPFS-FYNKCKLIFATN 306

Query: 612 KHLFVRNPDD----AWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKA 665
               ++ P      A++ R I+IPF   I    +D +   KL          W + G+  
Sbjct: 307 NLPEIKTPSYKDNLAFFNRLILIPFQVSIPENYQDKNLIYKLLY-EKDLIFSWAVDGLIR 365

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
           YI  G                   +++  ++I++ C +  N +     L  +Y+EY +  
Sbjct: 366 YIKNGFKFSGCHASTSLLNSYMNNSNSMLSFINEMCLLDRNSYVHFDKLVGAYAEYCKNN 425

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
                     R +   LKQK     +  +++ ++  +K   +GL+L    + 
Sbjct: 426 FLDTTTTKDKRQLKNILKQKY---KLIYKRLNRKDGNKYGFEGLRLLENHDD 474


>gi|153955539|ref|YP_001396304.1| hypothetical protein CKL_2924 [Clostridium kluyveri DSM 555]
 gi|146348397|gb|EDK34933.1| Phage-related protein [Clostridium kluyveri DSM 555]
          Length = 472

 Score =  234 bits (596), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 72/472 (15%), Positives = 156/472 (33%), Gaps = 32/472 (6%)

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP-EDNNKNS 380
            + LY              + I ++    +    MNF+   K  +++ +       ++++
Sbjct: 7   NNKLYDIHNNLLRSSKDPRINIENVK--NMIMKKMNFINMDKLRIYEFTAGCYRALSRDN 64

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE- 439
                        ++  E S  +   +++          +L+  +   +   +G+LD   
Sbjct: 65  TLIEINKYIPNNIRSFIEPSDLRKLYEAIRLEPSIQFNPELVPDNKYLINCHNGVLDFNT 124

Query: 440 ----TGQKVKPTKELYITKSTGTPFVEGEPSQE--FLDLVSGYF-ESEEVMDYFTRCVGM 492
                   +   +           +          F   +        +++      +G 
Sbjct: 125 LSNGKPIIMYHNEIYRFINCVQANYNPNYSINNSYFERFIVNITKGDNQLIILIQEILGY 184

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
                N A++   + G   SGKS  + +I    G + V N    ++   +          
Sbjct: 185 IFSNFNNAKKAFILFGESNSGKSVFLRVIASICGEENVSNVPLQNLSDEK---------Y 235

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPN 611
           + +L G  I I SE  + + I+ A  K +    D + AR  +   +S            N
Sbjct: 236 VAKLYGKLINIYSELPDKEIIDTATFKSLVSETDKVNARKLFKAPFS-FYNKCKLIFATN 294

Query: 612 KHLFVRNPDD----AWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKA 665
               ++ P      A++ R I+IPF   I    +D +   KL          W + G+  
Sbjct: 295 NLPEIKTPSYKDNLAFFNRLILIPFQVSIPENYQDKNLIYKLLY-EKDLIFSWAVDGLIR 353

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
           YI  G                   +++  ++I++ C +  N +     L  +Y+EY +  
Sbjct: 354 YIKNGFKFSGCHASTSLLNSYMNNSNSMLSFINEMCLLDRNSYVHFDKLVGAYAEYCKNN 413

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
                     R +   LKQK     +  +++ ++  +K   +GL+L    + 
Sbjct: 414 FLDTTTTKDKRQLKNILKQKY---KLIYKRLNRKDGNKYGFEGLRLLENHDD 462


>gi|189916734|gb|ACE62875.1| phage-related protein FY0076 [Xylella fastidiosa]
          Length = 297

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 123/304 (40%), Gaps = 33/304 (10%)

Query: 464 EPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
            P+ EF+  ++     E      +  +  R  G    G  + Q+F  + G G +GKSTL+
Sbjct: 1   APAPEFITTLARITCEEGEASKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLL 60

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
           +LI    G    + A    +     P+   A   +  L G R+V   E+ E + +    +
Sbjct: 61  DLITGILGRYSGVAAPG-LLTGKNGPQHPNA---IADLAGRRMVTTHESGEGEVLREDFV 116

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
           KQ TGGD + AR  YG  + E   +    ++ N    ++  D   WRR ++IPF      
Sbjct: 117 KQATGGDTLKARYLYGE-FFEFKPTHKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDA 175

Query: 638 -----------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
                       RD   A+KL          W + G   +   GL    P++ L A E+ 
Sbjct: 176 AEGEEIGNGKYPRDMRIAEKL-AAEREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDY 232

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLN 741
           ++  D    +ID+ C++G    E+  +     L  +Y+++ +         +S       
Sbjct: 233 KEEQDRVGQFIDEECELGVEKEEKLSTPMGGGLYPAYTQWCKASG---VCALSKVRFLGG 289

Query: 742 LKQK 745
           L+++
Sbjct: 290 LERR 293


>gi|291289516|emb|CBH29173.1| BA71V-C962R [African swine fever virus E75]
          Length = 669

 Score =  232 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 95/636 (14%), Positives = 204/636 (32%), Gaps = 69/636 (10%)

Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYD---E 262
                  +       Y   +  W  VV A+ +    S+  + +A  +S++    ++   +
Sbjct: 6   EARYLHKILNLLPPEYYVEYPLWSNVVFALANT---SANYRPLAEWFSQKCPEKWNTGGK 62

Query: 263 ENFNYKWDTFDFEEIGDTAKK---RSTFTSLFYHHGKLIPKGLLASRFSDAY-------- 311
           E     W+           K+             + +++ +G  +      Y        
Sbjct: 63  EKLEKLWNDASRHTEKKITKRSIMYWAHKHAPQQYKEIVEQGYFSILAEYVYSYNGMLEH 122

Query: 312 ---NKAMFSIYKKGHFLYTADTKA--WYKKDKNNVYIWSLTLDK-------------ITA 353
               K ++++      +         W++       +    + K             I+ 
Sbjct: 123 YMIAKVIYAMMGNKFVVDVDSNGKYVWFEFVLPGQPMNQGEIWKWRKEVNPDELHIYISE 182

Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
           +    +  + E +     +P + N  +   +     +  +  +  +S  K   +  E   
Sbjct: 183 NFSRVMDRITEHIKYHLSQPHETNILNYYKKLLKAFERSKSKIFNDSFKKGVIRQAEFLF 242

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFVEGEPSQEF-- 469
                   LD++   LG  +G+L +E    + +    E  I + T   +V   P   +  
Sbjct: 243 RQRSFIQTLDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPENPWTK 302

Query: 470 --LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
             L+ +       +   +    +  A+  G K    +   G G +GK+ LM L+    G+
Sbjct: 303 LLLNALQDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGD 362

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
            Y      S +   R   A K N + +RL G       ETN+++ +N +++K+M     +
Sbjct: 363 HYASKLNISLLTSCR-ETAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDV 421

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI----VIPFDKPI------- 636
           TAR       S    + T     N +  +   D   WRR       + F           
Sbjct: 422 TARELNQKQES-FQMTATMVAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHNPDPGNPYE 480

Query: 637 ANRDASFAQKLET-----KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
              D  F  +                +F + ++   +  +            E  R+  D
Sbjct: 481 KKEDPRFIHEYIMDPDCQNAFFSILVYFWEKLQKEYNGQIKKVFCPTIESETEAYRKSQD 540

Query: 692 TYQAWIDDCCDIGENLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
           T   +I +      +         +  +Y+E+    +N  R       + L L Q+    
Sbjct: 541 TLHRFITERVVESPSAETVYNLSEVVTAYAEWYNANINVKRH------IALELSQE-LEN 593

Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
            +  + ++      RI+KG ++   FE++    + I
Sbjct: 594 SVLEKYLQWSPNKTRILKGCRILHKFETLQPGESYI 629


>gi|120602099|ref|YP_966499.1| plasmid/phage primase [Desulfovibrio vulgaris DP4]
 gi|120562328|gb|ABM28072.1| plasmid/phage primase, P4 family [Desulfovibrio vulgaris DP4]
          Length = 828

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/448 (14%), Positives = 141/448 (31%), Gaps = 52/448 (11%)

Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
             +    Y      +++W+    +I                           + +  R  
Sbjct: 411 CQENPMMYHDKSGQLFVWNGKHFEIY-------------------------SDEQLKRRA 445

Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
            N           +   S A ++ A       +D  D    +L  ++G+L++ T + V  
Sbjct: 446 INALGDEATASRVASCSSLAMTMSAIPHGRSLNDRED----WLCIENGMLNVSTLELVPH 501

Query: 447 TKELYITKSTGTPFVEGEPS--QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
            ++   T      +        + +L  +    ++E  +      +G  L    K  + +
Sbjct: 502 DRDYLATIMLPVRYDSEATPKPERWLTFLGETIQTEGPIAQLQEFMGYCLTRQTKFDKCL 561

Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
            + G G  GKS ++ +++   G         + +       A         L G  + + 
Sbjct: 562 LLLGPGSDGKSKVIKVLRAMVGEANCSAVSMTGLEDQFQRSA---------LFGKLLNVG 612

Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
           +E      + +   K +  GD + A   + +++ E           NK   V +  D ++
Sbjct: 613 TEV-TTAALESEYFKAIVTGDPIQASFKHKDSF-EFTPCVKLVYAANKLPRVMDNSDGYF 670

Query: 625 RRYIVIPFDKPIANRDASFAQKLE---TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
           RR + I F +     D +    LE           +W L G+   +++G    + +    
Sbjct: 671 RRILPIQFKRQFLENDPAMDPDLESKLMAELDGIFEWSLVGLHRLLAQG-RFTMCDETRD 729

Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
              + R+  +    ++ D C I EN   +   L   +  Y  +      K+++       
Sbjct: 730 ILMDYRRFNNPVLGFVQDWCCITENTRTDIKDLYAQFKRYASENG---FKQLNRENFMRE 786

Query: 742 LK---QKGFIGGIKREKIEKEWKSKRII 766
           L+   +K       R    +     R  
Sbjct: 787 LETAARKVREDAAVRVTRPRSANGARPY 814


>gi|296446071|ref|ZP_06888020.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
 gi|296256430|gb|EFH03508.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
          Length = 578

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 139/399 (34%), Gaps = 31/399 (7%)

Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL---------- 436
                 R  V   + A+  A    A           +S S  +  Q+  L          
Sbjct: 172 RRLARWRFAVSSKNSARLVAMLKTAAPHLRREPGGFNSESMLIVTQNATLRVIVEEIGGK 231

Query: 437 -DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
            +     +    +E Y T      F     + ++   +     S ++     +  G+ L+
Sbjct: 232 KEARLDVRRGFAREDYATGLVPCDFDLMAKAAKWDAFLLRCLPSADMRRTVRQYAGLGLV 291

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
           G    Q+ +   G G +GKS  + +I    G  Y ++     I+      AG+A+P ++R
Sbjct: 292 G-TLLQKLMFHHGFGANGKSVFLAVISGVIGKSYGVSLPKETILGRGERGAGQASPDIVR 350

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L G R V I E  E++ +    +K++TGGD M  R  +   Y +     TP +  N    
Sbjct: 351 LFGKRFVRIDELKEDESLREDLVKRLTGGDEMAVRNLF-EGYFDFANRATPHMSGNGFPK 409

Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQ---KLETKYTLEAKKWFLKGVKAYISKGLD 672
           +   D+  WRR +V+ +   I   +            +       W L GV  Y+  GL 
Sbjct: 410 IDGTDNGIWRRMLVVHWSVTIPPEERREFDGFVAELLEERSGILNWLLDGVLDYLEHGL- 468

Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
              PE    A  + ++  +    +I DC +  E     + +  ++Y  +        ++ 
Sbjct: 469 FIAPE-IAAATSKYQEEMNPIGEFIKDCVEAHEGERVAASTAYQAYVSWSMAN---AKRA 524

Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
            +       + +            +++    R     +L
Sbjct: 525 KTQTAFGREMAKL----------FKRDNDRARSYLDCRL 553


>gi|139473887|ref|YP_001128603.1| phage DNA primase/helicase protein [Streptococcus pyogenes str.
           Manfredo]
 gi|209559299|ref|YP_002285771.1| Putative DNA primase/helicase-phage associated [Streptococcus phage
           NZ131.2]
 gi|134272134|emb|CAM30379.1| putative phage DNA primase/helicase protein [Streptococcus pyogenes
           str. Manfredo]
 gi|209540500|gb|ACI61076.1| Putative DNA primase/helicase-phage associated [Streptococcus phage
           NZ131.2]
          Length = 794

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 71/448 (15%), Positives = 154/448 (34%), Gaps = 28/448 (6%)

Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS------PRFWFNTD 390
           D  +         +   +       + ++V    +  E    ++K          +  + 
Sbjct: 366 DDRSWLEIDE-RGEPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEYLKSY 424

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV-KPTK 448
              + + + +K +  ++++ A    + +S++  +S    +   +G+ DL       K   
Sbjct: 425 ISTKKLGKITKIRHISETVVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNSFKTKFDP 484

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
           EL+   S    +      + F   +       E +D+     G         Q+ + I G
Sbjct: 485 ELHARSSHPVVYDPEAACETFEGFLRETVG-AENIDFIFEWFGYNFYREYAIQKMLFIYG 543

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            GG+GKSTL+N+++   G           +MQ R  + G        L        ++  
Sbjct: 544 SGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFDTDAK 595

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
                + A +K +TG D + A                     N+   +R+      RR +
Sbjct: 596 PQYLADGATLKMLTGEDTIHADRKNKEP-INFYNYAKLSFAMNELPPMRDFSGGLKRRMM 654

Query: 629 VIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           ++  DK +     A +                ++G++  +SK  D  I      + E+  
Sbjct: 655 ILEMDKVLTQEVKAKYPLDKIMGEVPGIFNRAMEGLRKALSKR-DFSISASMGSSVEKWE 713

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +G D    +++D C++GE+       +  +Y  Y +       K ++       L++  +
Sbjct: 714 KGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQDSG---YKPLAKNAFNHRLRELNY 770

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAF 775
                 + ++   K  +   G KLK  F
Sbjct: 771 EN----KNVKSGGKQAKNWVGFKLKSEF 794


>gi|297569229|ref|YP_003690573.1| phage/plasmid primase, P4 family [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925144|gb|ADH85954.1| phage/plasmid primase, P4 family [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 761

 Score =  230 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 162/443 (36%), Gaps = 30/443 (6%)

Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
           +  ++  +I+  +     ++       +K  ++D   + +    + K  ++  N +   +
Sbjct: 336 RFWQDQFFIYDGSAYHDESA-----NDIKAALYDFLADAKVVV-DGKLQKYKANRNRVGE 389

Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
            ++    A + A  + A S    +      +S ++   +GIL L T + + P    +   
Sbjct: 390 VLDALKAAVNLADRITAPSFIGNSGRD---ASEYIAAGNGILHLPTRELLPPDPAFFTRN 446

Query: 455 STGTPFVEGEPSQE-FLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
           +    +    P    +L  ++  +    E +      +G  L      Q+   I G   S
Sbjct: 447 ALPFNYNHDAPPPAAWLQFLNSLWPDDPEAIKTLQEIMGYLLTSDTTQQKIFGIVGPMRS 506

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
           GK T+  +I    G   V     S + Q            +  L+G +  IIS+      
Sbjct: 507 GKGTIGRIITALLGQANVAGPTLSALSQQFG---------IASLIGKKAAIISDARLGSR 557

Query: 573 IN----AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
            +      ++  ++G D ++    + N ++         I+ N+   + +   A   R++
Sbjct: 558 ADQAAITERLLAISGEDNISVPRKFLNDFTG-KMDVRFVILTNELPRLADSSGALANRFV 616

Query: 629 VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           ++   +    R+     K           W L G++   S+G     P    +A +E   
Sbjct: 617 MLTMTQSFLGRERPGLTKDLLAELPSILNWALDGLERLTSRGY-FVQPASSREAMQELAD 675

Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
            +    A++ D C++G+ L  E   L +++ ++            ++++   +++    +
Sbjct: 676 LSSPIGAFVRDRCEVGQGLAVEVGLLYEAWKQWCNDHGR--EHPGTSQSFGRDIRAA--V 731

Query: 749 GGIKREKIEKEWKSKRIIKGLKL 771
            GI  ++        R+ +GL L
Sbjct: 732 PGISTKQKRAGGDIIRVYEGLTL 754


>gi|205374882|ref|ZP_03227674.1| primase, putative [Bacillus coahuilensis m4-4]
          Length = 538

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 86/525 (16%), Positives = 175/525 (33%), Gaps = 36/525 (6%)

Query: 259 TYDEENFN---YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD--AYNK 313
            +  E       K + F+ + +   ++K      ++    K           +   A++ 
Sbjct: 29  GFTPEEIEEQNKKVEEFETKHLIKVSEKDKKKMKVWETVLKDEKGNEFIGPINHTVAFDG 88

Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373
                +       T D K          +I    L +     +N + S        +   
Sbjct: 89  NEKVKFIPPFLQCTVDNKG-----NEREWISKGFLAEYLIENINAIYSGGLMYIYDNGVY 143

Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
               +N +          +  N+   S     A   +     +     ++S++  +  ++
Sbjct: 144 RPILENEEKGIIKALLTPQFSNMNTVS---DVASQWKIDYRINKHPQEINSNNNMINLKN 200

Query: 434 GILDLETGQKVK----PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
           G+LD+   +  K       E   T      +      +EF   +      ++V       
Sbjct: 201 GLLDISDNENWKFIKGHNPEHLSTIQIQANYNPEAKGKEFHKFLDSSVPDKQVQVLLQEM 260

Query: 490 VGMALLG-GNKAQRFIHIRGVGGSGKSTLMN-LIKYAFGNQYVINAEASDIMQNRPPEAG 547
           VG  L       Q    + G G SGKST +N  ++   G+    +    D+  N   +  
Sbjct: 261 VGYCLTPFVTSKQMIFILTGQGDSGKSTFLNATLEALVGDNAKSHVALQDLDGNEYNQ-- 318

Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
                   L G  + I ++  +    +   +K  TG D +TAR      + +        
Sbjct: 319 ------AELFGKIVNIFADLPDKPLKDIGYLKAATGKDWITARRIRQAPF-QFKNKAKFV 371

Query: 608 IVPNKHL--FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
              N     F ++  DA++ R  +IPF++ I  +D    QKLE K       W L+G++ 
Sbjct: 372 YSANDLPSNFSKDSTDAFYNRLTLIPFNQKITKKDPYLEQKLE-KEIDYIAYWALQGLQR 430

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
            IS G      +   + K E ++ ++    ++++ C++         SL  ++  + EQ 
Sbjct: 431 LISNGFKFSENQKSNELKAEYKKNSNPVMVFVEEYCELSSENETPRVSLWTAWQNFCEQN 490

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
            +      S      NL      G   ++      +  +  KG++
Sbjct: 491 GHVA---GSQIKFNKNLTAL--YGEQIQQSQMNNSRRTKSWKGIR 530


>gi|332703042|ref|ZP_08423130.1| phage/plasmid primase, P4 family [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553191|gb|EGJ50235.1| phage/plasmid primase, P4 family [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 572

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 77/487 (15%), Positives = 178/487 (36%), Gaps = 42/487 (8%)

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI-----TAS 354
             ++     +  +  +     +   L+   T   ++ +       +    +         
Sbjct: 56  DEVVHDNLEEIGDARLVVKRWRNQLLFDNTTGEAFRFNCQRWLRDTNRCHQPRVAQLADP 115

Query: 355 IMNFLVSMKEDVFDLSEEPEDN-----------NKNSKSPRFWFNTDYRRQNVEENSKAK 403
                  + +       E +              +  +   F    + R +N+ +     
Sbjct: 116 YKARAADLHQQALSKEAECQHGGCTREPKCLACQEADRIRGFKKAHENRAKNLCKLPHIN 175

Query: 404 STAQSLEAGSI-FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-V 461
                  AG     I+ +  +  +  L  ++ ++DLETG+  +   + Y+ K++   +  
Sbjct: 176 KVWTLATAGEDSLGISGEEWERHTSLLVCKNCVVDLETGRSYQGRPDWYLYKASPVEYLG 235

Query: 462 EGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMN 519
                + + DL+     + ++ +DY     G +  G +  + F    G    + KST+  
Sbjct: 236 LNVGCEFWDDLLWKVSCKDQDWIDYLGLVAGYSATGLSNYKDFYCAYGPLADNAKSTVYG 295

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
            I+ A G+          +   R   +    P ++RL   R+ +  E  +N     + IK
Sbjct: 296 AIRAALGDYSETLPVELLLDGGRVKASSGPQPDIMRLRHLRMAVFDEAEQNHHFAMSAIK 355

Query: 580 QMTGG-DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-- 636
           + +GG D ++AR  YG      P++    +  N     +  D+ ++ R  VIPF+     
Sbjct: 356 RYSGGEDMISARGMYGKEQVTFPSTAKLHLHTNFIPKAKGNDEGFYNRLRVIPFEACFLL 415

Query: 637 --------ANRDASFAQKL--ETKYT----LEAKKWFLK---GVKAYISKGLDVDIPEVC 679
                   AN + ++  +     +           W ++    V   I++G  + +P+  
Sbjct: 416 PGRTPPSGANPEHTYQAQPGVVKRELERCRPGILSWIVRNAVKVHKLIAEGKGLPLPDRV 475

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI-STRTV 738
            +A  E R   D    ++ +CC +GE    +   L  +Y ++  +E+    K+I + +T+
Sbjct: 476 REAVREYRNEQDMTGRFLRECCVVGEGA-TQMKDLYGAYRKWCIEEMQLTDKQIPTMKTL 534

Query: 739 TLNLKQK 745
            +++K +
Sbjct: 535 GMDVKNR 541


>gi|254518128|ref|ZP_05130184.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226911877|gb|EEH97078.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 553

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 63/458 (13%), Positives = 151/458 (32%), Gaps = 25/458 (5%)

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
              K   +  +     DA  + + +I      +       +Y  +KN + + +       
Sbjct: 73  DIKKDQVQDEVEISIDDALVEELKTIVTNSKAIAL----GFYYDEKNKLRLNTNKCISYL 128

Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL--- 409
             I  F+  +K  V  +  + E   +                N       K   +     
Sbjct: 129 RKIAEFI--IKHGVLMIYNQKEGIFQELN-DELMGTILRYLMNTAIPDSWKKVYERDIID 185

Query: 410 -EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
                +  + ++++D     +   +G+ ++ T + +   K+   T  +   +++      
Sbjct: 186 GLMREVPRVDTNIIDD--TLIAFNNGVYNVVTKKLLPHDKKYMFTSKSPIDYLKDADCPI 243

Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           F   +       +E++       G AL+   KA+R     GVG +GKS    ++    G 
Sbjct: 244 FKKAIKEITCNDDELLSCLQEIFGNALINNTKAERAFFFTGVGSNGKSFCSEVLTEIVGV 303

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
             V N + S   +            +  ++   + I +E      I+   +K +  GD +
Sbjct: 304 NNVSNIQLSKFSE---------RFGIEGIVSKTLNIANENELGGAISTENLKAIISGDTI 354

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
                +        ++     + N      +    ++R+ +++PF++     D     K 
Sbjct: 355 NISRKFKQA-INYKSTIKLIFLLNTLPDTLDNTHGYYRKILIVPFNRVFKPEDIDKKLKE 413

Query: 648 ET-KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           +          W L+G +  I+   +    +   K  +  ++  +  +A++++     E 
Sbjct: 414 KVCTELSGVLNWCLEGAERLINNDYNFTESKAIEKVTKAYKEEQNPVEAYLNEVLVYEEG 473

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
             E   ++  +Y  + E E    R   S +     L  
Sbjct: 474 SSETKKAVLDAYKSWIEGEGISARGSDSPQRFWRALNN 511


>gi|189916736|gb|ACE62876.1| phage-related protein FY0076 [Xylella fastidiosa]
          Length = 305

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 28/283 (9%)

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
           + +  +  R  G    G  + Q+F  + G G +GKSTL++LI    G    + A    + 
Sbjct: 25  KPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYSGVAAPG-LLT 83

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
               P+   A   +  L G R+V   E+ E + +    +KQ TGGD + AR  YG  + E
Sbjct: 84  GKNGPQHPNA---IADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLKARYLYGE-FFE 139

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQKL 647
              +    ++ N    ++  D   WRR ++IPF                  RD   A+KL
Sbjct: 140 FKPTHKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGKYPRDMRIAEKL 199

Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
                     W + G   +   GL    P++ L A E+ ++  D    +ID+ C++G   
Sbjct: 200 -AAEREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQFIDEECELGVEK 256

Query: 708 WEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            E+  +     L  +Y+++ +         +S       L+++
Sbjct: 257 EEKLSTPMGGGLYPAYTQWCKASG---VCALSKVRFLGGLERR 296


>gi|189916738|gb|ACE62877.1| phage-related protein FY0076 [Xylella fastidiosa]
 gi|189916740|gb|ACE62878.1| phage-related protein FY0076 [Xylella fastidiosa]
          Length = 293

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 117/285 (41%), Gaps = 30/285 (10%)

Query: 464 EPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
            P+ EF+  ++     E      +  +  R  G    G  + Q+F  + G G +GKSTL+
Sbjct: 1   APAPEFITTLARITCEEGEASKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLL 60

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
           +LI    G    + A      +N      +   ++  L G R+V   E+ E + +    +
Sbjct: 61  DLITGILGRYSGVAAPGLLTGKN----GPQHPNAIADLAGRRMVTTHESGEGEVLREDFV 116

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
           KQ TGGD + AR  YG  + E   +    ++ N    ++  D   WRR ++IPF      
Sbjct: 117 KQATGGDTLKARYLYGE-FFEFKPTHKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDA 175

Query: 638 -----------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
                       RD   A+KL          W + G   +   GL    P++ L A E+ 
Sbjct: 176 AEGEEIGNGKYPRDMRIAEKL-AAEREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDY 232

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQEL 726
           ++  D    +ID+ C++G    E+  +     L  +Y+++ +   
Sbjct: 233 KEEQDRVGQFIDEECELGVEKEEKLSTPMGGGLYPAYTQWCKASG 277


>gi|320094352|ref|ZP_08026140.1| hypothetical protein HMPREF9005_0752 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319978740|gb|EFW10295.1| hypothetical protein HMPREF9005_0752 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 883

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 82/541 (15%), Positives = 170/541 (31%), Gaps = 71/541 (13%)

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332
           ++           +  ++     +     L            +  +   G  LY+     
Sbjct: 361 EYAGTDFKEPDTDSVRTVIAKTAEDTDSALADWCEPR-LAGRLEYVSGAGFRLYSPSRGT 419

Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
           W                       +        +  + +   + +           T   
Sbjct: 420 W---------------------ETDNSKDNARTIKLVEDMLRERHMGIVKSGDSKRTQRD 458

Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
           R+N+ +  K ++  + L+   +     D  D++   L   +G++DL TG  +        
Sbjct: 459 RKNLNK-GKIEAVTRLLQGRLLHG--PDEYDANPDILNVGNGVVDLRTGTLLPHAPSYRC 515

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN---KAQRFIHIRGV 509
           T+ T  P++     +++   ++      E   +F R VG A  G              G+
Sbjct: 516 TQYTPVPYLPEASHEDWKAALAAL--PAESRPWFRRWVGQAATGYTPREDNTMLGIAAGI 573

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GK+TL+  ++ A G      A    +   R       N + + L G R V+I E  E
Sbjct: 574 GANGKTTLLTAVRLALGTYAGTAAMDLLLSSPR-----NTNNTKMALYGKRFVLIEELPE 628

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
              ++  ++K +TG + +   L + + + E  A+ +  +  N    V    +  WRR  V
Sbjct: 629 G-RLDGVQVKAVTGTELIRGNLKFKDEF-EWRATHSLIVTTNNLPTVSEFSEGLWRRPFV 686

Query: 630 IPFDKPIANR---------DASFAQKLETKY---TLEAKKWFLKGVKAYISKGLDV-DIP 676
           + F     +          DA   Q+L             W ++G   +   G  V  +P
Sbjct: 687 LEFPYRFTSNPQAEADRPGDAGLTQRLLAPESPALPAVLAWVVRGAVEFYEHGQQVGALP 746

Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
                A    ++ +D   A+  +C             L  ++  +  ++        S R
Sbjct: 747 APISSATASWQEQSDVLLAFASECLVKDAGAVVPGSHLYAAFEAWLSEQGAAS---WSQR 803

Query: 737 TVTLNLKQKGFIGGIKREKIEKEW--------------KSKRIIKGLKLKPAFESVDDNS 782
           T    +   G+   +K      +                  R  +G++    F + +D  
Sbjct: 804 TFRGRIASHGYFRDVKEGTHRWKKLTLSTWGAEAHPTADKVRGYRGIR----FRTSEDER 859

Query: 783 N 783
            
Sbjct: 860 R 860


>gi|119476604|ref|ZP_01616914.1| hypothetical protein GP2143_03208 [marine gamma proteobacterium
           HTCC2143]
 gi|119449860|gb|EAW31096.1| hypothetical protein GP2143_03208 [marine gamma proteobacterium
           HTCC2143]
          Length = 594

 Score =  227 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 69/513 (13%), Positives = 159/513 (30%), Gaps = 55/513 (10%)

Query: 270 DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329
           +      +       S+     +       + + A +  D ++   +            +
Sbjct: 101 NYLGRVALSRRNNNISSARQWLWSQVVSKAQQVAAKQTRDIHDSFDYIDESAEEKTSKPN 160

Query: 330 ----TKAWYKKDKNNVYIW-SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384
               T A  +K   +  ++ + +  +  A    +     + V  + +             
Sbjct: 161 QYVLTNAVIQKLGEDNLVFANGSFWRWDAEYGVWASVSDQSVKQIIQ------------- 207

Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL--ETGQ 442
                    +++ +N  + +     +    F+  +D        +   +G +        
Sbjct: 208 TVIPKLQITKSIVDNVLSVTKTMVHKEKHRFNQLNDG-------INTLNGTIRFIDNRWI 260

Query: 443 KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD----YFTRCVGMALLGGN 498
                K  Y T      +     +   +      F  +  +D       + +G  LL   
Sbjct: 261 LTPHEKTEYRTSVIPVEYDPTAEAPRCMQFEREVFRDDPDIDDKIFLLRQAMGYTLLSST 320

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
               F    G G +GKS  ++LI+   G + V   + + +                ++ G
Sbjct: 321 PYPSFFIFEGSGANGKSVCLDLIRALCGTENVSAVQMNQMAN---------RFQRAQMNG 371

Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
               ++SE  E   +  A+IK  + G+  T      + + E    +T F   N     R+
Sbjct: 372 KLANLVSELPEGGRLPDAEIKSDSSGELTTVENKGRDPF-EIIPFYTMFFATNHLPHTRD 430

Query: 619 PDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
              A  RR  +I F++  +   +D    +KL            L+ +K   + G     P
Sbjct: 431 LSPALQRRARIIRFNRTFSSGEQDPHLIEKL-KGELPGILNQALEALKHLFTDG-AFVEP 488

Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
           +    AK++    +D    ++++ C +  +      +L ++Y  +        +  ++ +
Sbjct: 489 QSSKDAKKDWLLQSDQVTQFVNESCVLNVDGRVSVDTLYRTYRMWATDSGF--KSLVTKK 546

Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
           T T  L   G            +  S R   G+
Sbjct: 547 TFTQRLVISGVGST--------KSGSVRYYSGV 571


>gi|313158768|gb|EFR58155.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Alistipes sp. HGB5]
          Length = 493

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 73/462 (15%), Positives = 154/462 (33%), Gaps = 51/462 (11%)

Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW-YKKDKNNVYIWSLTLDKITA-- 353
            + + +         N+  + I+        A+   W   +++N +Y+++          
Sbjct: 49  DMAQSIQKKLLKMKVNEKHYVIFTIEEIARLAEKNDWGLCRNQNEIYLYNGMFWSRLDVD 108

Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
           +   FL+   E +       +      K    +                +S  QS  A  
Sbjct: 109 AFQKFLLKASERMGVPIVSSKYYQFGKKLFEQF--------------MMQSYLQSPAA-- 152

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLD 471
                    +S+   +   +G  ++  GQ    K  K+ ++T      +     +  F  
Sbjct: 153 ---------NSNVVLINLLNGTYEIRNGQGKLRKFCKDDFLTHQLPFKYNPDAAAPLFDK 203

Query: 472 LVSGYFESEEVMDYFTRCVGMAL--LGGN--KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
            +S     E         +G      G    K ++ + + G G +GKS    ++    G 
Sbjct: 204 YLSKVQPDESARKVLAEYIGYLFIKTGNTILKEEKALMLYGGGANGKSVFFEIVNALLGA 263

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
           + VI     D+                +L    +   SE   N ++ ++  KQ+  G+ +
Sbjct: 264 ENVICHSLQDLTDGSG-------YYRAQLANKLVNYASEI--NGKLESSIFKQLVSGEPV 314

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQ 645
           +ARL YG  +             N+        DA++RR++++PFD  I   +       
Sbjct: 315 SARLPYGKPFH-LTHYARLIFNCNELPRGNEFTDAYFRRFLIVPFDVTIPPEEQIKDLHS 373

Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG 704
           ++          W L+G+   + +           +A E+ R  +D+ + ++ D+     
Sbjct: 374 QIIENELAGVFNWVLRGLARLLKQN-GFTECIAARRAVEDYRLQSDSLRQFLNDERYKSD 432

Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
            N+  +   L   Y  Y ++   Y    ++       LK  G
Sbjct: 433 VNVKTKIVDLYIEYKYYCQENGFYH---LTKPNFIKRLKSYG 471


>gi|169830164|ref|YP_001700322.1| primase [Lysinibacillus sphaericus C3-41]
 gi|168994652|gb|ACA42192.1| primase, putative [Lysinibacillus sphaericus C3-41]
          Length = 373

 Score =  227 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 126/354 (35%), Gaps = 15/354 (4%)

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
            +++ A    +     L+  S  +  Q+G+ +L+T +  K       T      +     
Sbjct: 15  KEAIRAILREATFVAELNIYSDLVNLQNGMYNLKTHKLEKHHPRYLSTVRIPIIYNRSAK 74

Query: 466 SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
             +FL  +        +++      +G  +    K+++ ++  G G +GKS L NL+K  
Sbjct: 75  CPKFLHFMDEITNNDSDLIKVHQELIGYWITTEIKSEKAVYYYGRGANGKSVLANLVKIL 134

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTG 583
            GN+ V     +            +N  L  +M   + + +E      ++N    K +  
Sbjct: 135 VGNENVSTIPLAQF---------NSNFGLEGIMNKTLNVAAENEMNGLKLNTETFKAIVS 185

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
           GD +T  + + +      +      + N+     +    ++RR I+IPF +     + + 
Sbjct: 186 GDGITINIKFKSPIVNYKSKCRLLFLGNELPDTSDLTQGYFRRLIIIPFKRTFKEEERNR 245

Query: 644 AQ-KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
              +   +       W ++G+        +    +       + +   +    + +    
Sbjct: 246 DILQELQEELDGIFNWAIEGLVRLNQLEFNFTKADAIESEMAKYQLMQNPVLNFFESTVV 305

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDR---KRISTRTVTLNLKQKGFIGGIKR 753
           +  NL  +   + K Y E+ E+   Y+     R   +     L  KG +   KR
Sbjct: 306 LSGNLKIKRSEIYKLYLEWIEKNGLYNSVRNNRQFKKEFENVLDSKGILIIEKR 359


>gi|229106917|ref|ZP_04237019.1| Primase [Bacillus cereus Rock3-28]
 gi|228676527|gb|EEL31271.1| Primase [Bacillus cereus Rock3-28]
          Length = 519

 Score =  227 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 75/555 (13%), Positives = 172/555 (30%), Gaps = 65/555 (11%)

Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
           +++   L+   E          I   +  H+     +             S++ E++ N 
Sbjct: 5   KQLKEMLASLNEGSTASDFFNAIR-GIKGHNTQDIVNCLLA--------NSSFYEKDINK 55

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD--AYNKAMFSIYKKGHFL 325
                   E  +  KK         H  + I  G       +   +N  +F+ Y     +
Sbjct: 56  -----GEYEESERIKKIRAEILDVIHTSEAIQTGFCYDEKKEKFYFNANLFADYFLQGVI 110

Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385
              D         +          +  +      V + + +  L  E   N+  S   + 
Sbjct: 111 TCCDQHGILYVYNHK-----GYYQECNS------VQLGKIIRTLMNEGLANSWRSGYEKE 159

Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445
                 R                       +   + L+  + ++  ++G+ +L +     
Sbjct: 160 AIQAIQRE----------------------ADYVEELNPYNDWINLENGMYNLTSYTLEP 197

Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFI 504
              +   T      F E     +FL  +       EE++      +G  L    + ++ +
Sbjct: 198 HHSKYLSTVRVPIHFNETATCPKFLRFMKDITNDNEELIKVHQELLGYWLTTETQCEKAV 257

Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
           +  G G +GKS L NL+    G+  V +   S   +         N  L  ++G  + I 
Sbjct: 258 YYYGRGANGKSVLANLVSILVGSGNVSSVPLSQFSK---------NFGLEGIIGKTLNIA 308

Query: 565 SETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
           +E   +   +N    K +  GD +T  + Y +      +      + N+     +    +
Sbjct: 309 AENEMQGSRLNTEAFKSIVSGDGITINIKYRSPIVNYKSKCRLLFLGNELPDTTDLTQGY 368

Query: 624 WRRYIVIPFDKPIANRDASF-AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
           +R+ ++IPF +     + +    +   +       W ++G+     +       +V    
Sbjct: 369 FRKLVIIPFKRTFTEAERNRNLLEELKEELPGIFNWAIEGLNRLKKQKYIFSHSKVIEAE 428

Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
             + R   +    + +   +I         SL +++ ++  ++        S +    + 
Sbjct: 429 MSKYRLAQNPVLHFFESSIEIEVGSKIRRPSLYEAFQKWSHEQGMDSSALRSRQRFFKDF 488

Query: 743 KQ----KGFIGGIKR 753
           +     KG I   KR
Sbjct: 489 ENVLDSKGIILNQKR 503


>gi|7288084|emb|CAB81819.1| hypothetical protein [Sulfolobus islandicus]
          Length = 699

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 90/725 (12%), Positives = 212/725 (29%), Gaps = 114/725 (15%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL------PACGFGFVCG 59
           + A+  ++NGF + P+    K+P      K+  + L+ E+  +           +    G
Sbjct: 6   QYAQWFVNNGFAIFPIDKETKKPVISEWQKYSREKLTEEEKAEFLKMIGEQNYNYAIPGG 65

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF---------RMNK 110
              + L   D +          +   + L    +  +      L  F         + N 
Sbjct: 66  Q--KGLVVLDFEDLQLLKQWISEPALDDLCKQTLC-VQTPHGGLHIFVISYEIPEHKFNP 122

Query: 111 EGIKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLL 165
                 K     Q +   +LG G             P+  +++T     +  ++      
Sbjct: 123 AFTLNGKGIVDLQSYNSYVLGVGSCINHKYCESPKCPRRGQDHTTCYTLYNNELVPIVE- 181

Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
           +   ++   K+  EI        +    +K W           E         +      
Sbjct: 182 TVRGLKEFLKWLDEIAKQKKLGIELSPSAKEWVYGKTEAVEEEEFKKLKEDMAKYNKFKG 241

Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285
                          + + + KE +++W    +T      + K  ++    I  +     
Sbjct: 242 KTVEAVREEVCKEMKKSNEELKEKSQKWKAIYNTAIPVICDSK--SYTQLGIDRSRGDWR 299

Query: 286 TFTSLFYHHGKLI---------PKGLLASRFSDAYNKAMFSIYK---------------- 320
            F +LF H    +            + + +++      +   +K                
Sbjct: 300 VFRALFTHGVADLDVVDKLLPADSKVYSPKWNRYMIHTIAKAWKYSKPALKFQKEAQGKN 359

Query: 321 ------------KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM-NFLVSMKEDVF 367
                           L     KA+Y+   +N  I    +      I   F   +++ + 
Sbjct: 360 EKEAKKIARKIITEAVLERYKIKAFYQVTGHNQAIVGTFVWDKKKGIYVPFDKGLRKVIR 419

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            L+E  +  +++    R       +R   +   + K    +        +          
Sbjct: 420 KLAESLQIKSRDKTLAR-----LSKRDVDDIVDEIKDLKLTPIPAEPLRV---------- 464

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------------------SQ 467
               ++  ++      +   K          P+                           
Sbjct: 465 --AFKNVTIEWAIKANILHRKTPKQYSFYYLPWTVNYEEFNKMKSLSIQEIEELAKRLCP 522

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           + L+    +   + +     + +G  L  G K ++   + G G +GKS+ +NL+K   G+
Sbjct: 523 KSLETFKSWVGVKWI--LLFQIIGYTLYPGIKFRKAFMLVGEGKNGKSSFINLVKKVLGD 580

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
             V  +              +    +  L       ++E+ +    +  ++K++TG D +
Sbjct: 581 YAVSISPRELFD-------PRNRFIVGNLYHKLANAVAESKDYSIDDMDRVKRLTGDDWI 633

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPIANRDASFAQK 646
           TA + + +      +     I  N    VR+  D A+W R++++ F     + D+ F + 
Sbjct: 634 TADVKFKDP-ITFKSVAKLIIASNNMPHVRDTNDRAFWHRWVIVEFPHQFKDNDSWFDKT 692

Query: 647 LETKY 651
              + 
Sbjct: 693 FTEEE 697


>gi|296393232|ref|YP_003658116.1| phage/plasmid primase [Segniliparus rotundus DSM 44985]
 gi|296180379|gb|ADG97285.1| phage/plasmid primase, P4 family [Segniliparus rotundus DSM 44985]
          Length = 633

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 58/442 (13%), Positives = 137/442 (30%), Gaps = 22/442 (4%)

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
           + +  +W  ++  +          +   +     +       +   R +  T  +  +V 
Sbjct: 60  RGDWLLWDGSMWAVV-EQDELRSHIYRSLEHAVYKARVGKGEAWEARAFDPTPGKVSSVL 118

Query: 398 ENSKAKSTAQS-LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
           +  +A       L+A      +      +   +   +G+L + +   ++ T E +   + 
Sbjct: 119 DALRAVVLMDGGLDAPKWIGASGARRPPAGEVVACANGLLHVPSRTMIEHTPEFFTRTAV 178

Query: 457 GTPFVEGEPSQ-EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
              +    P    +L  +   +    + +       G  L G    Q+ + + G   SGK
Sbjct: 179 PFDYNPSAPEPKRWLGFLQSVWPGDADSVALLQEFFGYVLSGRTDMQKILLVVGPPRSGK 238

Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET---NEND 571
            T+  ++    G         + +           N  L  L+G  + ++ +        
Sbjct: 239 GTIARVLIALVGKANAAAPTLASL---------GTNFGLSPLLGKPLAVVGDARLGGAGT 289

Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
                ++  ++G D +T        ++         IV N+   + +   A  +R++V+ 
Sbjct: 290 RQVVERLLSISGEDWLTVDRKNKEPWTGPIP-ARFVIVSNELPRLSDASGAIAKRFVVLT 348

Query: 632 FDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
             +    ++         +       W L G++     G           A  E      
Sbjct: 349 MAQSFLGKEDHRLTADLLEELPGILAWSLDGLERLARNG-SFTRTASSQDATRELEDLAS 407

Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
              A++ + C I  +   E   L   ++ + EQ      K  ++     +L+   F G  
Sbjct: 408 PVAAFLREHCVIDPDGTVEKDKLYARWAVWCEQNG---LKPTNSAMFGRDLRAA-FPGLG 463

Query: 752 KREKIEKEWKSKRIIKGLKLKP 773
                    K  R   G++LK 
Sbjct: 464 DARPRNTGSKRPRHHVGIRLKT 485


>gi|290959763|ref|YP_003490945.1| NTP-binding protein [Streptomyces scabiei 87.22]
 gi|260649289|emb|CBG72404.1| putative NTP-binding protein [Streptomyces scabiei 87.22]
          Length = 485

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 58/490 (11%), Positives = 148/490 (30%), Gaps = 28/490 (5%)

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
           + L A     A  + +   ++        D K   ++ + +   W+ T  +         
Sbjct: 10  EELPAPSHPMAVARRLLPDWQGE------DGKLVCRRWRASWMRWNGTCWREVDDD-QVR 62

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
            +M E +     +    +  ++   +          ++            +  +      
Sbjct: 63  KAMYERLEHAVYQVPAKDGETEERDWAPTKPKISNLLDALGSIVLLPTDTDTPAWIDDHG 122

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE- 478
           D        +  Q+G+L +     +  T E +   S    +     +  + + ++  +  
Sbjct: 123 DTGQEHGPIVACQNGLLRIRDRALMPHTPEFFNNVSIPYAYDPSATAPTWDNFLAQLWPD 182

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             + +       G  + G    Q+ + + G   SGK T+  ++K   G + +        
Sbjct: 183 DPDSIAALQEWFGYVISGRTDQQKILLMVGPTRSGKGTIARVLKALVGKENLAGPTL--- 239

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA---KIKQMTGGDCMTARLNYGN 595
                      N  L  L+G  + +IS+   +   N     ++  ++G D +     Y  
Sbjct: 240 ------AGLGTNFGLSTLIGKPLGVISDARLSGNDNTQVVERLLTISGEDTIDIDRKYRQ 293

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
            ++    +    I+ N+     +       R+I++        ++               
Sbjct: 294 PWTGKLPT-RLVILSNELPHFGDSSGVIANRFILLNTRLSWLGKEDPTLTDRLIAEVPGI 352

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
             W L+G+      G  +  P    +A    R       A++ + C  G        +L 
Sbjct: 353 INWALEGLARLQRTG-RITEPASSREAVTTMRDTASPTSAFVRERCTTGPTCSVPVEALW 411

Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE-KEWKSKRIIKGLKLKPA 774
             + ++ E       K  + +    NL     +  + R +      +      G+ +  +
Sbjct: 412 AVWRDWAEDNG---VKPGTKQVFGRNL--LSVVPQLNRTRPRDAYGRQVVTYNGITVNVS 466

Query: 775 FESVDDNSNI 784
              + ++  I
Sbjct: 467 EPHLPESRLI 476


>gi|55416829|gb|AAV50479.1| helicase III/ VV D5-type ATPase (C-term) [Acanthamoeba polyphaga
           mimivirus]
          Length = 391

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 131/337 (38%), Gaps = 31/337 (9%)

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE----F 469
                   LD ++  +G ++G+ DLE G       +  I+  T   ++E +   E     
Sbjct: 6   YDPNFLTNLDENNYLIGFENGVFDLEAGIFRDGCPDDCISLCTNYKYIEIDEDDETFKNI 65

Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
              +      + + +Y    +   L G N  + F  + G G +GKS LM L+KY  G+ Y
Sbjct: 66  NGFLKKIQPDKSMREYILTLLSTCLSGTNSEESFYVLTGSGANGKSKLMELLKYTLGDLY 125

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
               +   + + R   +  A+P L    G R     E   +DEIN   +K  TGGD +TA
Sbjct: 126 K-PMDIRLLTEKRSSSS-SASPELADKKGIRACPFDEPKASDEINTGFMKIFTGGDTITA 183

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---------- 639
           R  Y          F PF++ N+   +++ DD  WRR  VIPF                 
Sbjct: 184 RALYKEP-IYFKPQFKPFLLCNELPTIKSDDDGTWRRLKVIPFLSKFIKHSEATKKMKKE 242

Query: 640 ---------DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
                    D S ++KL   +        LK  + Y   GL    P++  +   E R+  
Sbjct: 243 GLPKNHFWADTSLSEKLP-DWKQGFMCLLLKYFRKYRKHGL--IHPKLVTQHTVEYRKKC 299

Query: 691 DTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQE 725
           D +Q +I D     +N         L ++  E+ +  
Sbjct: 300 DVFQDFIGDYLVRVDNTKKGISVMDLYQNMREWYKSN 336


>gi|167044432|gb|ABZ09108.1| putative Poxvirus D5 protein-like protein [uncultured marine
           crenarchaeote HF4000_APKG6D9]
          Length = 435

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 129/363 (35%), Gaps = 23/363 (6%)

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
               D+    +  ++GIL+L+T Q    +            + +    ++F+  +     
Sbjct: 89  DQEFDNHENLVNLRNGILNLQTQQLSPHSHNFLFRIQLPITYDQNATCEQFIRFLEQCHP 148

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            E+            LL     ++     G G +GKST + +I+   G   V N    D+
Sbjct: 149 DEKNRITALEAFASTLLPNIHLEKMFMNVGSGANGKSTYLKVIEQFLGTDNVSNISIHDM 208

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
             +R  +AG        L+G    I ++ +  +    A +K +   D ++ +   G    
Sbjct: 209 ESDRFAKAG--------LVGKFANIYADISRRELPELASVKAVISSDSISVQRK-GEHRF 259

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD------ASFAQKLETK-Y 651
               +       N+   +     A +RR ++I +++  +++D       +  ++L T+  
Sbjct: 260 TMRNTAKLIFSCNELPELGEDSHAVYRRLVLIEWNERFSHQDKHHKINPNLFKELTTEQE 319

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                   L+  +     G  +   E  LK +    Q  D    ++D C +         
Sbjct: 320 LSGILNLLLQHTQKISKNG-KLTYDETALKLRGIWAQKADPIGTFLDSCVEQDFETKTSK 378

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
            S+ +++  + +            +     + QK     I+      E K+ R+ +G+K+
Sbjct: 379 ASIFQAFCSWCKSN---KITPKKQKQFNYKVSQK---FAIQDTIGRIENKTTRLWEGIKV 432

Query: 772 KPA 774
             A
Sbjct: 433 VSA 435


>gi|51245423|ref|YP_065307.1| hypothetical protein DP1571 [Desulfotalea psychrophila LSv54]
 gi|50876460|emb|CAG36300.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 593

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 85/508 (16%), Positives = 174/508 (34%), Gaps = 70/508 (13%)

Query: 308 SDAYNKAMFSIYKKGHFLYTA---DTKAWYKKDKNNVY--IWSLTLD------------- 349
           ++  +  + +   K  +LY     D   WYK   +      +  T+D             
Sbjct: 49  NERGDGLLLAAILKDRYLYVTAPDDKGEWYKWVGHVWQLDEFDTTVDVAEQVALAYEEYA 108

Query: 350 -----KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN-------------TDY 391
                +    +        E +  +  E E+ +   K                       
Sbjct: 109 FHVEAQRDQELAKLDEERNEKIAMIKAECEEEDAKKKIDTLLQKPLVPPKWMTSTIKDYN 168

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSIT--SDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
           +R  V  + +    A+         I   SD LD     L   +G+LDL+ G  +     
Sbjct: 169 KRAWVLRSRERIMKARFFAPKVDRRIAAISDDLDQKKWLLPCANGVLDLKRGLLMDGRPS 228

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM------DYFTRCVGMALLGGNKAQRF 503
             +TK     +        F +++       E+        +  R  G A+ G    +  
Sbjct: 229 DLLTKQIDVAYNPDADYSFFEEIIKDICVCPEIEGTDLLPAFLKRLFGYAITGNVNEEFL 288

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
               G G +GK T++  I    G  Y     +  I Q   P     +  +  L G R+V+
Sbjct: 289 AIFIGPGRNGKGTILETITSVLGAYYHQANRSLFIEQKFEPPPSATSEHMYALQGKRLVV 348

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
            +ETN+  +I+   IK +TGG+ +  R N+ +       + T  +  N   +    + + 
Sbjct: 349 GAETNKGQKIDGGLIKGITGGNKVNYRKNFKSE-KTFTPTHTLILETNNIPYGLTKEFSL 407

Query: 624 WRRYIVIPFDKPIANRDASFAQK-------------------LETKYTLEAKKWFLKGVK 664
            +R +++ F     +   +  +K                      +      KW ++G  
Sbjct: 408 TQRLVLVDFPFRYVDDIEAEERKYPALKGRFKKKNKDLKAKLKSRESREGVLKWLVEGCL 467

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD---IGENLWEESHSLAKSYSEY 721
            +   GL   IP+  L+A+E+  +  D    ++ +  +     EN+  E   L +++  +
Sbjct: 468 EWDEHGLL--IPDCVLQAREDLTKKEDYIGQFLGEIVEHVPDRENMRMEFKYLYEAFQYF 525

Query: 722 REQELNYDRKRIS-TRTVTLNLKQKGFI 748
            +  ++    ++    T++  LK++G+ 
Sbjct: 526 WKDTIDSRDNKVPHKNTLSKELKERGYS 553


>gi|319891793|ref|YP_004148668.1| Putative primase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161489|gb|ADV05032.1| Putative primase, superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 789

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 96/773 (12%), Positives = 224/773 (28%), Gaps = 81/773 (10%)

Query: 15  HNGFKLIPLRLGDKR--PQRLGKWEEQLLSSEKID-KLPACGFGFVCGVGEQPLYAFDID 71
              +  +P      R        W +   +  + +      G GFV   G+      DID
Sbjct: 38  QQNYSKVPYNDKGYRASSNNKNTWTDFNTAYIEYEMNEKYSGIGFVL-SGDNEYICLDID 96

Query: 72  SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
           +          D  + L+             +  F   K    +KK        +++   
Sbjct: 97  NAVSDNGEIHSDLVKTLNKMTYCEKSPSGTGVHCFFKGKLPSNRKKKRTDL--DIELYDT 154

Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
            ++                     + ++ +   +    VE  FK           +  + 
Sbjct: 155 ARFMTVTG------------ESIGQSEISEDQTILNNLVEQYFK------EEASFEATTT 196

Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242
               + +  ++ +  N  + +       +   G ++++       V   +H+      + 
Sbjct: 197 NNHNSESQLSDEEVINIMLKSKQKDKISDLLQGDYEQYFASPSEAVQSLLHYLAFYTGKN 256

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
            ++ + I   ++     ++ +  N  W   + E+     K             +      
Sbjct: 257 KAQMERIFLTYNNLTDKWNSKRGNSTWGELELEKAIANQK----------EVYQKGINDF 306

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
                     + M S        Y    K W ++ +        T+            ++
Sbjct: 307 EVILSDKESVRKMLSKVGDDERSYM--EKLWIEEGEKGRKP---TVISPNRCAHLLKENL 361

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF--SITSD 420
           K  +FDL E  +     ++   +  N  Y ++ +       ++ ++ E        +   
Sbjct: 362 KFILFDLEENTKLAMYRAEEGIYTQNVSYIKRVISWLEPKLNSNKADEVIYHLKNRVDIK 421

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-----EGEPSQEFLDLVSG 475
              +S   +  ++G+ + +T Q    T E   T    T +               + ++ 
Sbjct: 422 SKTNSPDLIPVKNGVFNRKTKQLEPFTPEYVFTTKINTAYKTQSGVPVIEGWSVDNWINE 481

Query: 476 Y-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
                  V     + +  +L G    ++ I + G G +GK T   LI    G + + + +
Sbjct: 482 IACNDHGVAKLLWQVINDSLNGNYTRKKAIFLVGDGNNGKGTFQELISQLIGAENIASLK 541

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNY 593
            ++  +            L  L G   VI  +      I+  +  K +  GD +      
Sbjct: 542 VNEFDE---------RFKLSVLEGKTAVIGDDVPVGVYIDDSSNFKSVVTGDPVLVEFKN 592

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
                 +    T     N     ++      RR +++PF+     +  +F  K +     
Sbjct: 593 -QPLYRATFKCTVIQSTNGMPSFKDKTSGTLRRLLIVPFNANFNGQSENFNIKEQYVKNQ 651

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW----IDDCCDIGENLWE 709
           +  ++ L   ++        DIPE      +  +Q  D    +     D+          
Sbjct: 652 KVLEYVL--YRSINMDFDTFDIPEASNNMLDIYKQDNDPVYDFKVNVFDEWVVKT----I 705

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
               +   Y E+ E         +S R    + +  G++G          + +
Sbjct: 706 PKKVVYYKYKEFCEHSGYTG--VLSDRKFYKSFE--GYLGEKWDTDDRGRFSN 754


>gi|327198749|emb|CCA61450.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
          Length = 849

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 104/687 (15%), Positives = 213/687 (31%), Gaps = 64/687 (9%)

Query: 96  IGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH 155
             + P  L     +    + K    S +   +        V   +    +     +    
Sbjct: 162 SSKSPSDLPYLVSHALVYESKTGRVSRENDWE-------SVFAGVKLDKETVPRSSVKNM 214

Query: 156 RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLS 215
              +    +    D++  + F                P+       +   ++ +I   + 
Sbjct: 215 IRTLLSIRVGKIVDMQKQYSFENMPEAKANNAHLMNEPA-----AVHVNISDEKIGNLVM 269

Query: 216 CFGEEFYNGSHDEWIPVVMAVHHETR---GSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
           C   E     +  W+ V M +    R    ++  + +   +S+Q   Y++     K+D+ 
Sbjct: 270 CLKSERA-EDYGNWLKVGMILASLARSRKDAAYFRNLFHIFSRQSPKYNDVECEAKFDSL 328

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLI-PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK 331
               I  +        +L +   +    K L    F+          Y     +  + T 
Sbjct: 329 ----IKSSHDGGLGIGTLVFMAKEDNAIKDLSDILFNYCLEFIPLHDYDIAKMVIESVTA 384

Query: 332 AWYKKDKNNVYIWSLTLDKITAS--------IMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
            +        Y +  T+ K            +  +  S    V       +D        
Sbjct: 385 RYITHKDFGCYAFEGTIWKEVTGWDNIFKNHVNEWAFSYIRTVKQKITSSDDPEDPHTKS 444

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443
           R    T    + V+  S   +  +S+           L + ++RF+   + + D+E  + 
Sbjct: 445 RMAILT-RLEKKVKNYSSMNNIVKSMFDQYFDHKMYLLFEQNTRFIAFNNCVFDIEEWKL 503

Query: 444 VKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGYFESEEVMDYFTRCVGMALLGGN 498
           V    + Y++       VE E S +       D     F  +E+ +Y        + G N
Sbjct: 504 VPANPDHYLSIKIHHDLVEWESSPQAAKQFVEDFFYKIFPDDELREYCLDNFARIITGKN 563

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
             ++F    G G +GKS  +NL++  FG   +   ++  +      + G A P   RL  
Sbjct: 564 VYKQFQFWTGTGNNGKSVCINLMEAVFGKMSMKTPKSIVMGG--QVKQGGAAPETYRLKD 621

Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG--NTYSESPASFTPFIVPNKHLFV 616
           +R+ II E   ND ++  +IK ++G D   +R  +       E    F P ++ N+   +
Sbjct: 622 ARLGIIDEVTNNDYLDPGQIKGLSGNDTFYSRDLFQKCKDIKEITPMFFPILITNETPII 681

Query: 617 RNPDDAWWRRYIVIPFDKPIA-------------------NRDASFAQKLETKYT--LEA 655
           + PDDA W R  +I F+                         D     KL+      L  
Sbjct: 682 KRPDDATWDRIRLIRFESKFKSDVVSFIKNNPGVDHSKVFKADPQVGDKLKKNAKYFLAF 741

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
               L              +P+   +     + G +  + ++++   +       S  + 
Sbjct: 742 FMSRLLKADTIDEFNSGEVVPDKVNEGLHNFKSGQNIMRRFLEENFIVDP----VSQEVY 797

Query: 716 KSYSEYREQELNYDRKRISTRTVTLNL 742
                 +E      +  +S       L
Sbjct: 798 SLNKIMKEYNATRPKVVLSLEETLSAL 824


>gi|87198666|ref|YP_495923.1| Phage or plasmid primase P4-like [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134347|gb|ABD25089.1| Phage or plasmid primase P4-like protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 540

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 76/507 (14%), Positives = 152/507 (29%), Gaps = 51/507 (10%)

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
               +D  N         G  L+ AD        K     +           M  L   +
Sbjct: 11  RLPTNDLGNARRLFEAANGRLLWLADGAG----GKGCWIAFDGIRWSADEGPMRALAFAQ 66

Query: 364 EDVFDLSEEPEDNNK-------------------NSKSPRFWFNTDYRRQNVEENSK--- 401
           +   ++ +E     +                     ++ + W  +     + +  +    
Sbjct: 67  KAAVEICDEAHALRECTADELAEVYGRKFSKEMAEERAGQLWTWSIKSGDSAKTTAMQNQ 126

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--------KVKPTKELYIT 453
            K      E   +  +     D+        +G L              +     +    
Sbjct: 127 FKGLRDGDEGPFVTQVWQRDFDAQPMAYHCSNGTLRFVQDDAGTWSHVFEKGHRPDDRFM 186

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
           +     +     ++ +++ +              R  GM L      Q F   +G G  G
Sbjct: 187 QVANVAYDAAAKAKAWIERMEVMHHDPVQRTALQRIYGMTLTALISDQAFYIFQGKGQDG 246

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG-SRIVIISETNENDE 572
           KS   +++    G         + +       +G     ++RL G  R+V++ E  +N  
Sbjct: 247 KSVTNDVVCQLHGMYARKADPKTFLEGPTQQSSG-PQSDIVRLAGDVRLVVMDEPKKNST 305

Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
            +  KIKQ TG + + AR  +  T       +      N      + D  + RR+ + P+
Sbjct: 306 WDGQKIKQATGSEMI-ARGVHATTELSFTPHWQLIAECNGLPKAPSDDRGFRRRFKLYPW 364

Query: 633 DKPI------ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
                     A+      +            W +KG   ++++ +    PE   +A    
Sbjct: 365 VVQFGVTPGVADEPVHLVKARLIGEGSGVLNWMIKGCVEWLNERVVP-EPEAAKRATASF 423

Query: 687 RQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
              +     WI   CD+      EE+  L K++ ++     + + K I+  T    L   
Sbjct: 424 WSASSAMGEWIASHCDLSDPEAREEATPLYKAFRQFCIDRGDDETKIITQTTFGRQLNDA 483

Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLK 772
                I R       K +R+  G++LK
Sbjct: 484 ----QIYRVPNNSTGKVERV--GIRLK 504


>gi|297172230|gb|ADI23209.1| predicted ATPase [uncultured Gemmatimonadales bacterium
           HF0770_11C06]
          Length = 352

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 129/357 (36%), Gaps = 26/357 (7%)

Query: 423 DSSSRFLGEQDGILDLETGQKV------KPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
            +   +L  ++G+LD+              T E +        F       ++   +   
Sbjct: 11  PADREYLAVKNGLLDVRAWLTGDSPVLGPHTPEWFTPVCLPYEFDPTATCPKWEGFIQWM 70

Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
           F+  + ++       G  L+  +  Q F+ + G G +GKS L+  +K+  G++   +   
Sbjct: 71  FQHDDALIRLVQEWFGYCLVLDHSQQVFVIVVGDGANGKSVLLQTLKHLVGHKNCSSVAL 130

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
            +               L   +G  + I+SE  +  ++   K+K    GD MT    +  
Sbjct: 131 ENFDG---------RFDLAMTIGKLVNIVSEIGDVAKLPEGKLKAFVSGDLMTFDRKHRE 181

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653
              +   +       NK     +  D  WRR+I +P D  +A  ++D +  QKL+T    
Sbjct: 182 P-LQVNPTARLVFATNKLPTFADRSDGLWRRFIPLPCDATVAPRDQDRALPQKLQT-ELP 239

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
               W   G++    +G   ++PE   +   E R  +     +  D C    +       
Sbjct: 240 GILNWAAAGLRRLRKRGY-FEVPEASRRLLAEHRGASQPELIFFADHCKAQADAEMACAI 298

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
           L  +Y  + E       + +  +   L L+++     ++R +  +  K      G+ 
Sbjct: 299 LYGTYQRWCED---GAHRAMDPQQFGLALRKR--FVRVERARRRRGGKQLWFYVGVA 350


>gi|329955101|ref|ZP_08296082.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus
           YIT 12056]
 gi|328526391|gb|EGF53406.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus
           YIT 12056]
          Length = 486

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 66/492 (13%), Positives = 155/492 (31%), Gaps = 32/492 (6%)

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
               K I   +  + F + Y   ++   +K       D K  +++   ++ +       +
Sbjct: 5   KEILKEILDNIPKTDFKEIYAGGLYRRLEKET---DPDVKKLFQEKIYSIQVTDENKSVL 61

Query: 352 TAS---------IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
                           +++  +  +  ++   +         F      +    +  ++ 
Sbjct: 62  VVEKVKEVAGQLGYGLVINEGKTCYLYNKVFWEPINELDLKHFLGKAFQKMGADKYTARN 121

Query: 403 KSTAQSLEAGSIFSI-TSDLLDSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGT 458
              A  +   + +S+      D     +   +  L +      ++ + + + Y       
Sbjct: 122 VRIANKVHEQACYSLYRQTERDKGVVKINLTNTTLVIGHDGSVKEQEHSADDYFFYVLPY 181

Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
            +        F   +     +++V +     VG  L    K ++ +   G G +GKS   
Sbjct: 182 EYDPKAMCPMFHKFLDEVLPAKDVQEVLQEFVGCCLNPFIKLEKALCCVGSGFNGKSVFF 241

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
            ++    G   V +   + +  ++             +    +   S+ N          
Sbjct: 242 EIVMALLGEDNVCSYNINSLCDDKGYS-------RAMIKNKLLNYSSDFN-GKIFANGIF 293

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
           KQ+T G+ + AR  Y                 N   +  +    + RR +++PFD  I  
Sbjct: 294 KQLTSGEPVEARRLYKEPEI-LKDYARIACNCNSMPYSADTSFGFRRRLLIVPFDVKIDK 352

Query: 638 -NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
              D   A+KL          W ++G+  +I  G  +         ++  ++ TDT   +
Sbjct: 353 GKADPDLAKKL-KSELSGILIWAIEGLGRFIRNGKKLSKSSTLENLEQAYKEDTDTVVMF 411

Query: 697 IDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           +    C    +      SL  +Y EY         K  +     + LK +G++     +K
Sbjct: 412 LSAKKCVPDNDNKIGLTSLFNNYREYCRDNNQ---KAETRENFKMKLKSEGYVVEEDNKK 468

Query: 756 IEKEWKSKRIIK 767
             K   +  +I+
Sbjct: 469 GVKIGINSSMIR 480


>gi|315606065|ref|ZP_07881096.1| phage/plasmid primase [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312347|gb|EFU60433.1| phage/plasmid primase [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 897

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 99/673 (14%), Positives = 207/673 (30%), Gaps = 81/673 (12%)

Query: 152 TPPHRFKVEDTPLLSEE-----DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206
           TP  +      P +        D+  +   +     P   ++ S   ++T    +  +  
Sbjct: 242 TPGPKRDPSSLPDIIGAFNRVYDIAAVIDAYSLPYTPAGPERWSYNYAETTGGLSLVEGR 301

Query: 207 NREITAFLSCFGEEFYNGSHDEWIPV----VMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
                +  +         S   +  V    + A+H      S+       + ++ S    
Sbjct: 302 ADLAISRHANTDPACIPDSRGGFHAVNAFDLAALHLFGNLDSEADRAKGPYEREASQAAM 361

Query: 263 ENFN-YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSI-YK 320
           E                D  ++  T                  + + +            
Sbjct: 362 EQLAARDPAVMREYAGTDFPQEPDTDRVRTVIAKTAEDTDSALADWCEPRLAGRLEYVSG 421

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
            G  LY+     W                       +        +  + +   + +   
Sbjct: 422 AGFRLYSPSRGTW---------------------ETDNSKDNARTIKLVEDMLRERHMGI 460

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
            +      T   R+N+ +  K ++  + L+   + S   D  D++   L   +G++DL T
Sbjct: 461 VASGDSKRTQRDRKNLNK-GKIEAVTRLLQGRLLHS--PDEYDANPDILNVGNGVVDLRT 517

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN-- 498
           G+    T     T+ T  P+      +++   ++      E   +F R VG A  G    
Sbjct: 518 GELHPHTAAYRCTQYTPVPYRPAAIHKDWTAALAAL--PAESHPWFRRWVGQAATGYTPR 575

Query: 499 -KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
                     G+G +GK+TL+  ++ A G      A    +   R       N + + L 
Sbjct: 576 EDNTMLGIAAGIGANGKTTLLTAVRLALGTYAGTAAMDLLLSSPR-----NTNNTKMALY 630

Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
           G R V+I E  E   ++  ++K +TG + +   L + + + E  A+ +  +  N    V 
Sbjct: 631 GKRFVLIEELPEG-RLDGVQVKAVTGTELIRGNLKFKDEF-EWRATHSLIVTTNNLPTVS 688

Query: 618 NPDDAWWRRYIVIPFDKPIANR---------DASFAQKL---ETKYTLEAKKWFLKGVKA 665
              +  WRR  V+ F     +          DA   Q+L   ++        W ++G   
Sbjct: 689 EFSEGLWRRPFVLEFPYRFTSNPQAEADRPGDAGLTQRLLAPDSPALPAVLAWVVRGAVE 748

Query: 666 YISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
           + + G  V  +P     A    ++ +D   A+  +C             L  ++  +  +
Sbjct: 749 FYAHGQQVGALPAPISSATASWQEQSDVLLAFASECLVKDAGAVVPGSHLYAAFEAWLSE 808

Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW--------------KSKRIIKGLK 770
           +        S RT    +   G+   +K      +                  R  +G++
Sbjct: 809 QGAAS---WSQRTFRGRIASHGYFRDVKEGTHRWKKLTLSTWGAEARPTADKVRGYRGIR 865

Query: 771 LKPAFESVDDNSN 783
               F + +D   
Sbjct: 866 ----FRTSEDERR 874


>gi|307578028|gb|ADN53647.1| primase-like protein [Staphylococcus aureus]
          Length = 787

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/758 (13%), Positives = 230/758 (30%), Gaps = 85/758 (11%)

Query: 15  HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71
              +  +P  +   R        W +    S E        G GFV           DID
Sbjct: 38  QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDID 96

Query: 72  SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
           +  ++      +    +              L  F   K  +   +  + T   +++   
Sbjct: 97  NAIDEKGQINSELALKMMRLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154

Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
            ++                     +  + D   +    V+  FK    +   + ++  + 
Sbjct: 155 ARFMTVTGC------------TIGQNDICDNQEVLNTLVDEYFKENLPVNDVVREESNTN 202

Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242
                    ++    N  + +      ++   G+++ +       V   +H+      + 
Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKN 256

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
             + + I   ++     ++ +  N  W      E+    K + T  +       +IP+G 
Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTW---GQLELDKAIKNQKTIYTKSIDEFNVIPQGS 313

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
                     K + +                 +      +I      +   +I + +   
Sbjct: 314 KD-------VKQLLNQLGHEE-----------RTKMEENWIEEGKRGRKPTTI-SPIKCA 354

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSIT 418
                 L+    D+ +N+K   + F+     QN     +  S  +    S +A  +    
Sbjct: 355 YILNEHLTFILFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHL 414

Query: 419 SDLLD-----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----E 468
           ++++D     +S   +  ++G+ + +T Q    T +   T    T +            +
Sbjct: 415 TNMVDIKEKTNSPYLIPVKNGVFNRKTKQLESFTPDYIFTTKISTKYNPNVVRPNLNGWD 474

Query: 469 FLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           F   +       +E++      +  ++ G    ++ I   G G +GK T   LI    G 
Sbjct: 475 FDHWLYEIACADKEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGY 534

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDC 586
           + V + + ++               L  L G  +VI  +      I +++  K +  GD 
Sbjct: 535 KNVASLKVNEFD---------HEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDS 585

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
           +   +     Y       T     N      +      RR +++PF+    + + +   K
Sbjct: 586 VLVNVKNKQPYRT-EFRCTVIQSTNGMPKFTDKTGGTNRRLLIVPFNADFNDSNENVDIK 644

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
            +        ++ L   KA   +     IP+V  K  E  +Q  D+   +  +  D    
Sbjct: 645 EKYLKDNHVLEYVL--YKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNI 702

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
                  +   Y  + E+     +  +S RT     ++
Sbjct: 703 QKVPKKVVYYRYRAFCEENGYMGK--MSDRTFYRRFEK 738


>gi|221213691|ref|ZP_03586665.1| phage/plasmid primase, P4 family [Burkholderia multivorans CGD1]
 gi|221166480|gb|EED98952.1| phage/plasmid primase, P4 family [Burkholderia multivorans CGD1]
          Length = 487

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 79/537 (14%), Positives = 161/537 (29%), Gaps = 75/537 (13%)

Query: 51  ACGFGFVCGVGEQPLYAFDIDSKDEKTA--NTFKDTFEILHGTPIVR--IGQKPKILIPF 106
                +  G     +   D+D K+       +     +     P  R          + +
Sbjct: 15  DYNVAYATGPASGYVLVVDVDVKNGDATGLKSISRLEKEHGPLPPTRKVFTPSGGYHLIY 74

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           R  +    K  +  +    +D+   G Y +A        + Y +          D P+L 
Sbjct: 75  RYPENL--KVPSRINFLPRVDVKAEGGYCLAPPSII-NDEPYFY----------DEPVLP 121

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
                         T      K+    SK+ T  N  +    E                 
Sbjct: 122 ISRAPAWLLELLCSTQGTKPRKRKSAKSKSATIGNRNESVAFE----------------- 164

Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
                   ++ +                ++   Y+  N +      +  +I         
Sbjct: 165 ------GFSLLNAGLNP-------DLLEEELLEYNATNCDPPLSESEVSQIAANV----- 206

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
                             SR +D  N    S        Y ++ K W +K  +       
Sbjct: 207 -------ASSHQKNNDSVSRATDLGNAKRMSELYSDTLRYVSEMKRWLEKSPSG------ 253

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
              +     +  L+  +E +  + +E    N  ++            +  E N   K   
Sbjct: 254 -AWRFIDE-LRVLLLAREIIPMIHDEIRRLNPGNRRELM-----DHAKYSESNKALKDAV 306

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
           +   +    ++++  LD        ++G++DL TG+ +     L+IT++ G  F      
Sbjct: 307 ELFRSEPGIAVSASNLDEGEWMFPAKNGLVDLRTGKFMPMDPALHITQTAGVNFDPDATC 366

Query: 467 QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
             +   +      + E+++Y  R +G  L             G G +GKST +NL++  F
Sbjct: 367 PRWEAFLLEIMNGNVELVEYLRRAIGYTLTCQTSEHALFFAFGSGANGKSTFLNLLRALF 426

Query: 526 GNQYVINAEASDIMQNRPP--EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           G+          + +N      +  ++  + RL+G R+V +SE  E    +   +K 
Sbjct: 427 GDLGAQANGDMLLDKNGGQAMSSNASSSEVARLVGKRLVAMSEVEEGRHFSEKTVKW 483


>gi|206600076|ref|YP_002242151.1| gp94 [Mycobacterium phage Konstantine]
 gi|206287164|gb|ACI12509.1| gp94 [Mycobacterium phage Konstantine]
          Length = 995

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 163/419 (38%), Gaps = 39/419 (9%)

Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439
                   +     +    N  A +   + +A    ++  + LD+  R +G  +G+++L 
Sbjct: 571 KALQARLRSWKEFAKASGNNRNAMAALDAAKALPGVTVDINDLDNDGRLIGVANGVIELG 630

Query: 440 TGQKVKPTKE--LYITKSTGTPFVEGEPS--------QEFLDLVSGYFESEEVMDYFTRC 489
                    E   +IT +T TP++E +          Q++ + +  +   E++       
Sbjct: 631 VDGVRLRDAEAQDFITLNTKTPYLEPDQMSGTQKIGMQKWEEYLERFLPDEDIRRTAQVA 690

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +G  L+GGN  + FI ++G   +GKST+ NL   A G+  +  +           +  K 
Sbjct: 691 LGHCLIGGNPEKIFIVLKGDSNTGKSTMANLCAAALGDYAMTASLTI-------YQNHKL 743

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFI 608
           NP L + +  R+V+ +E +E D+I+A+ +K++TGG D ++A L   N   E    F P +
Sbjct: 744 NPLLAKALTRRMVVTTELSETDKISASMLKRITGGSDLISAELKGSNVLVERVPQFVPIV 803

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY--TLEAKKWFLKGVKAY 666
             N    +   D A   R  VIPF+  ++ ++         K         W ++G K Y
Sbjct: 804 ATNSVPSIEGADKALRNRLYVIPFNVVVSEQEDDKEAATVMKAVGLPAVLHWLVEGYKIY 863

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEES----------H 712
             +      P +  +  +      DT   ++  C         +                
Sbjct: 864 RRERGLPKDPRIVQE-SDAFASELDTVSTFLSQCVKKHPTNFGDPKIPWQDHPGWVILPD 922

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
            L ++Y  +  +    +  R+S    +  +   G      ++++    K  +   G+KL
Sbjct: 923 DLYEAYWNWCNRMKVREPDRLSQPKFSRRVAAMG----HNKKQLRGPKKPTQHWYGIKL 977



 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 49/389 (12%), Positives = 95/389 (24%), Gaps = 93/389 (23%)

Query: 2   PVMQWKEQAKQAIHNGFK-LIPLRLGDKRPQRLG--KWEEQLLSSEKIDKLPAC------ 52
               + +   +    G+   +PL  G K P   G    +    S EK+            
Sbjct: 11  AARPFAKAVSKYRRAGWGGTLPLPAGKKNPPPTGFTGHKAPYPSKEKLVSWLNDPKHKRA 70

Query: 53  GF--------------GFVCGVGEQP--------------LYAFDIDS-----KDEKTAN 79
                           G  CG                   +   D+D      KD++  +
Sbjct: 71  NICIRLAGTPAIKTDEGCTCGKLVGGTHAQNCEAKEEKYEIVGIDVDHYVKGDKDKRGGD 130

Query: 80  TFKDTFEILHGTPIVRIGQ----KPKILIPFRMNKEGIKKKKTTESTQGHLD-ILGCGQY 134
             +     L   P   I          +  +R+                 ++ I    ++
Sbjct: 131 QLEALEARLGKLPDTWISSARVDGKSGIRYYRVPVGL----AFRGQVDKDIECIYKGYRF 186

Query: 135 -FVAYNIHPKTKKEYTWTTPPHRFK-----------------VEDTPLLSEEDVEYLFKF 176
             V  +I+P T     W  PP                     V D PLL    +++L + 
Sbjct: 187 AVVWPSINPDTGGTQYWWFPPGVVPNEEGRKAWDGENGDVPRVADLPLLPSPWLDHLTQG 246

Query: 177 FQEITVPLVKDKKSIIPSK-----------------TWTNNNNRQYTNREITAFLSCFGE 219
                     D  S +                      T   +       +   +    +
Sbjct: 247 LMRADDDAEIDMDSSVEEIYRWADDTFNASGVVEHDDGTAEVDETQICARVKKSIGQHTD 306

Query: 220 EFYNG--SHDEWIPVVMAVHHETRGSSKGKE-----IARRWSKQGSTYDEENFNYKWDTF 272
           +  N   SHD+        +        G +     I + W+++    D+       +  
Sbjct: 307 KITNEATSHDKITNAHWEFYRLAAEGHIGWKAAVAQIEKIWTEEVVARDKRGRAELRNEI 366

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301
               +    K ++          + +P G
Sbjct: 367 FRSRVNALRKIKTRVDRNIAIGARAVPSG 395


>gi|298693735|gb|ADI96957.1| putative DNA primase [Staphylococcus aureus subsp. aureus ED133]
          Length = 787

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 100/758 (13%), Positives = 230/758 (30%), Gaps = 85/758 (11%)

Query: 15  HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71
              +  +P  +   R        W +    S E        G GFV           DID
Sbjct: 38  QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDID 96

Query: 72  SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
           +  +K      +    +              L  F   K  +   +  + T   +++   
Sbjct: 97  NAIDKKGQINSELALKMMQLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154

Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
            ++                     +  + D   +    ++  FK    +   + ++  + 
Sbjct: 155 ARFMTVTGC------------TIGQSDICDNQEVLNTLIDEYFKENLPVNDVVREESNTN 202

Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242
                    ++    N  + +      ++   G+++ +       V   +H+      + 
Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKN 256

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
             + + I   ++     ++ +  N  W      E+    K + T  +       +IP+G 
Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTW---GQLELDKAIKNQKTIYTKSIDEFNVIPQGS 313

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
                     K + +                 +      +I      +   +I + +   
Sbjct: 314 KD-------VKQLLNQLGHEE-----------RTKMEENWIEEGKRGRKPTTI-SPIKCA 354

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSIT 418
                 L+    D+ +N+K   + F+     QN     +  S  +    S +A  +    
Sbjct: 355 YILNEHLTFILFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHL 414

Query: 419 SDLLD-----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----E 468
           ++++D     +S   +  ++G+ + +T Q    T +   T    T +            +
Sbjct: 415 TNMVDIKEKTNSPYLIPVKNGVFNRKTKQLESFTPDYIFTTKISTKYNPNVVRPNLNGWD 474

Query: 469 FLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           F   +       +E++      +  ++ G    ++ I   G G +GK T   LI    G 
Sbjct: 475 FDHWLYEIACADKEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGY 534

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDC 586
           + V + + ++               L  L G  +VI  +      I +++  K +  GD 
Sbjct: 535 KNVASLKVNEFD---------HEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDS 585

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
           +   +     Y       T     N      +      RR +++PF+    + + +   K
Sbjct: 586 VLVNVKNKQPYRT-EFRCTVIQSTNGMPKFTDKTGGTNRRLLIVPFNADFNDSNENVDIK 644

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
            +        ++ L   KA   +     IP+V  K  E  +Q  D+   +  +  D    
Sbjct: 645 EKYLKDNHVLEYVL--YKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNI 702

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
                  +   Y  + E+     +  +S RT     ++
Sbjct: 703 QKVPKKVVYYRYRAFCEENGYMGK--MSDRTFYRRFEK 738


>gi|194100701|ref|YP_002003450.1| gp92 [Mycobacterium phage Predator]
 gi|192758417|gb|ACF05189.1| gp92 [Mycobacterium phage Predator]
          Length = 987

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 87/444 (19%), Positives = 167/444 (37%), Gaps = 42/444 (9%)

Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN------SKSPRFWFNTDYRRQNVE 397
           W    D+  A +      ++  +   +    +   +              +     +   
Sbjct: 513 WQRVRDRQEAYVTFLEADVQNQIAQFTAANPNVGASAFPAALKAVQAKLRSWREFAKASG 572

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE--LYITKS 455
            N  + +   + +A    ++  + LD+  R +G  +G+L+L   +  +   E    IT +
Sbjct: 573 NNRNSLAALDAAKALPGVTVDINDLDNDGRLIGVANGVLELGVDEVRRRDAEARDLITLN 632

Query: 456 TGTPFVEGEPS--------QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
           T TP++E E          +++ + +  +   EE+       +G  L+GGN  + FI ++
Sbjct: 633 TSTPYLEIEDMTGTQKIGVEKWQEYLERFLPDEEIRRTAQVALGHCLIGGNPEKIFIILK 692

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G   +GKST+ NL   A G+                 +  K NP L + +  R+V+ +E 
Sbjct: 693 GESNTGKSTMANLCAAALGDYA-------MTAGLSIYQNHKLNPMLAKALTRRMVVTTEL 745

Query: 568 NENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
           +E D+I+A+ +K++TGG D ++A L   N   E    F P +  N    +   D A   R
Sbjct: 746 SETDKISASMLKRITGGSDLISAELKGSNVLVERVPQFVPIVATNAVPDIEGADKALRNR 805

Query: 627 YIVIPFDKPIANRDASFAQKLETKY--TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
             VIPF+  ++ ++      +  K         W ++G K Y  +      P +  +  +
Sbjct: 806 LYVIPFNVVVSEQEDDKEAAMIMKAVGLPAILNWLVEGYKIYRREKGLPKDPRIIKE-SD 864

Query: 685 EERQGTDTYQAWIDDCCDIGENLWE---------------ESHSLAKSYSEYREQELNYD 729
                 DT   ++D C       +                 S +L K+Y  + E      
Sbjct: 865 AFAAELDTVSTFVDQCLRKHPTAYADPKFDWTGVGKQWVLTSDALYKTYQRWCETMNVNQ 924

Query: 730 RKRISTRTVTLNLKQKGFIGGIKR 753
           R+ +        L   G+     R
Sbjct: 925 REILDHPKFNKRLLSLGWPKKQMR 948


>gi|317485315|ref|ZP_07944195.1| phage/plasmid primase [Bilophila wadsworthia 3_1_6]
 gi|316923441|gb|EFV44647.1| phage/plasmid primase [Bilophila wadsworthia 3_1_6]
          Length = 563

 Score =  217 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 89/514 (17%), Positives = 188/514 (36%), Gaps = 48/514 (9%)

Query: 298 IPKGLLASRFSDAY--NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS- 354
           +   ++ + F +    +  +F+   +   +   D+  +   +  +        +      
Sbjct: 36  LTNEVIRTYFDEDGVGDGKLFNRLHRDKIVGVIDSDDFLFWNGAHWEKAKEKQEFRAIED 95

Query: 355 ---IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA-QSLE 410
              +   L   KE  FD  ++ +D +   +  +       R + + +     +    +  
Sbjct: 96  VVRLYERLAVEKEKEFDSVDKRDDPDLKKELQKQLGAIRRRIKTLRDAPGQDNLKKMTAR 155

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-----GEP 465
                 +  + LD   R L   +G+++LETG+  +     Y+  +  T +        +P
Sbjct: 156 VDPPLLVYPEQLDDKPRLLPCPNGVINLETGELEQGRPRDYLLTACETEYDPGLLDVEDP 215

Query: 466 SQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKY 523
                D +       +E++ +  R +G  L+   K   F+   G  G +GK TL+ LI  
Sbjct: 216 CPVANDFLLRSMDGDKELVAFIWRLLGYGLIRERKDHIFMIFHGEHGRNGKDTLIKLITT 275

Query: 524 AFGNQYVINAEASDIMQNRP-PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
             G     +     ++Q      +   +P ++RL G  I  I+E  EN +   AK+K+++
Sbjct: 276 TLGKALSGDVPVEMLLQTPNVKNSSGPSPDVMRLRGMCIAWINEAEENQKFALAKLKKLS 335

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--- 639
           GG  +T R  Y    +    +  P +  N+    +  D A+W+R +++ ++    N+   
Sbjct: 336 GGSYITGRSPYSKEETSWKQTHLPIMTTNELPKAKADDAAFWQRALILKWNLSFVNKPDP 395

Query: 640 --------DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
                   D    +KLE K         ++G   Y+  G  + +PE   +  E +R   D
Sbjct: 396 AKPYQRQADKYLDEKLE-KERKGVLARMVRGAIEYLKYG-GLQVPEKVYRWTESQRTNWD 453

Query: 692 TYQAWIDDCCDIGENLW--------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
               ++ + C                 +  L +++  +  +  +  R  IS +     L 
Sbjct: 454 DLAQFLSEWCVREPGHERIEDYKTSISATDLHEAFCLWYARYKD-RRFSISAKKFAEML- 511

Query: 744 QKGFIGGIKREKIEKEWKSKRIIK-GLKLKPAFE 776
                     +K     KS  I + G+ L P  +
Sbjct: 512 ---------NKKEIPSKKSNGIWRLGITLTPDAD 536


>gi|299531535|ref|ZP_07044941.1| Phage/plasmid primase P4 [Comamonas testosteroni S44]
 gi|298720498|gb|EFI61449.1| Phage/plasmid primase P4 [Comamonas testosteroni S44]
          Length = 420

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 139/409 (33%), Gaps = 51/409 (12%)

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
           Y W+ T   +          +K+ +  +++        S +            +++E   
Sbjct: 30  YRWTGTHWSMVDDE----SGVKQAMRWIADGNHGIVNPSNAKSTHQTALLWLPSLKETHS 85

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE-TGQKVKPTKELYITKSTGTPF 460
                                      +  ++G L L+ T   +   K+L I       F
Sbjct: 86  RA------------------------IIPVKNGYLHLDGTPSLLPHDKKLGIRHVLDCNF 121

Query: 461 VEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
                +  EF  L+       EV D      G  LL   + Q      G G +GK TL N
Sbjct: 122 DPAAATPTEFFKLLERILPDAEVRDRVQEYCGYTLLPDARFQCAQLWVGSGANGKGTLAN 181

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
           +++    N+   +    D                  ++G+ ++   E   ND      +K
Sbjct: 182 ILQALHTNKAAASPNKLD------------GFHAATVLGASLLYCDEAPPND-WCEQTLK 228

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637
            M  G+ +     Y      +  +    I+ N    +++  + +WRR+ V+PF   I   
Sbjct: 229 SMVAGESVAIDRKYL-PPITARVTGKWLILANHIPAIKDQSNGFWRRFGVVPFPVSIPAA 287

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKG-LDVDIPEVCLKAKEEERQGTDTYQAW 696
            RD   A+++          W ++G++  + +G  D ++P     A +  +  T++  +W
Sbjct: 288 ERDPLLAERIIKHELSAVLNWAVEGLQRLLLRGRFDPNMPRAMQNAIQSAKVETNSVHSW 347

Query: 697 IDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
           I D   ++  +L      +   YS + +Q        +S       L++
Sbjct: 348 ISDAAIELMTDLSTAKAEVYAVYSAWCKQNGMLA---VSAPKFWKRLQE 393


>gi|299536247|ref|ZP_07049560.1| hypothetical protein BFZC1_09515 [Lysinibacillus fusiformis ZC1]
 gi|298728233|gb|EFI68795.1| hypothetical protein BFZC1_09515 [Lysinibacillus fusiformis ZC1]
          Length = 599

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 77/534 (14%), Positives = 164/534 (30%), Gaps = 52/534 (9%)

Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322
                   +    E      + +    L       + +      +          +    
Sbjct: 100 RECENLISSVRILEPTARINENNLPGYLSDSDLNNVKQSSQKIGYEKIIPSQKKDVQGTQ 159

Query: 323 HFLYTADTKAWYKKDK---------NNVYIWSLT--LDKITASIMNFLVSMKEDVFDLSE 371
             LY   T +    +          +   +          T      L     D+F    
Sbjct: 160 DPLYDKKTNSQIIHNHTLAELLIDTHKFAVIEGNLYYWNQTLGYFVGLTGENADIF---- 215

Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
                           N   + ++    +  +   + + A     +  +LL     F+  
Sbjct: 216 -------------IRQNIPDKYKSRISFNSCQEILRWIMAKDEMKVNEELLVPRKSFVAF 262

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFV--EGEPSQEFLDLVSGYFE-SEEVMDYFTR 488
            + I++++         + + T      +          F   +S      + +      
Sbjct: 263 SNCIINIKDFSAHSHDPDYFFTSVLNAEYPLRSIPKGPVFESFISQITGGDQRLYMRLQE 322

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
             G  +      +   ++ GV  SGKS ++ L+++  G  +  N   S++ Q        
Sbjct: 323 LFGYVISEIRDVKVIPYLVGVKDSGKSIILRLLEHLVGPNFFTNLSFSELNQQ------- 375

Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
               L +L   ++    ET+E         K+++GGD + AR  YG  + +         
Sbjct: 376 --SFLCQLFEKKLNTCGETSEIALNRLDNFKKLSGGDYVMARYLYGQAF-KFINKAALIF 432

Query: 609 VPNKHLFVR--NPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664
             N    ++  +  +A+  R ++ PF+  +    +D     KL  K T     W L G++
Sbjct: 433 AGNHLPTIKGIDKSNAFSERLVIFPFNHQVPKEEQDIHLFDKL-MKETSYIAHWALIGLQ 491

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
            +I         E   K   E  + T++  ++I  CC +  +    +  L  +Y +Y   
Sbjct: 492 RWIDNNYQFTTCEQIEKMAREYSEQTNSIDSFIKSCCYMNPDSKTHNDVLETAYKKYCRS 551

Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
               +    S+R    N+K    I  +   +   + ++K    G+ LK     V
Sbjct: 552 YGMIEE---SSRMFHKNMKT---ITNLTYSRFRLKNENKYGYIGIGLKDTTYEV 599


>gi|301063354|ref|ZP_07203893.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
           proteobacterium NaphS2]
 gi|300442517|gb|EFK06743.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
           proteobacterium NaphS2]
          Length = 820

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 128/358 (35%), Gaps = 25/358 (6%)

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
            + L+ +   L   +G+L +ET +    + +          F +      +++ ++  F 
Sbjct: 476 PEELEFNPMLLNIANGMLHVETMEIKPHSPDYNSRVQLPVSFRKDATCTRWIEAIAQIFS 535

Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
            +    D      G AL         I   G G +GK  +  ++    G   V +   + 
Sbjct: 536 DDLSKADVLQEFFGYALYPRILFPCCIFQIGQGRNGKGVVEKILCAMLGRANVSHVSLAR 595

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           + +N  P         + + G  +    ET     ++    K++  GD + A+  Y    
Sbjct: 596 MEENFGP---------VEIEGKLLNSCGETEA-KPLDVTNFKKIVAGDEIQAQRKYL-PD 644

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
            +        +  N    V+   DA++RR IV+ + +     + D     KL  +     
Sbjct: 645 VKFTPIAKHLVSMNAFPGVKEKTDAFFRRIIVLEYRQKFEGEDDDKRLVDKL-LEELDGI 703

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-----ENLWEE 710
            KW L+G+K  +++  ++  PE    AKE  R+  +   A++ + C +       N+   
Sbjct: 704 FKWSLEGLKRVLARE-EIASPEAVSIAKERFREKVNPVIAFVKEACMLDVDAIQTNVKVL 762

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
              L ++Y  + E+      + +        +    F    KR    +E      + G
Sbjct: 763 PADLYRAYGSWMEE---AKLRSLGKNNFYEQIL-LNFPHVKKRRDGTRELFFGIGLLG 816


>gi|188588977|ref|YP_001919584.1| putative primase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499258|gb|ACD52394.1| putative primase [Clostridium botulinum E3 str. Alaska E43]
          Length = 712

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 98/809 (12%), Positives = 205/809 (25%), Gaps = 155/809 (19%)

Query: 20  LIPLRLG---DKRP----QRLGKWEEQLLSSEKIDKLPACGF---GFVCGVGEQPLYAFD 69
           LIP+       K P         W        + +K           +CG     +   D
Sbjct: 14  LIPIVPLFNYSKVPTIKWNDKDNWITSKEYIFE-EKYSNKNITGFSLICGEP-GGIMVID 71

Query: 70  IDSKDEKTA----NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ-- 123
           ID      +     +F D  + L      +I     +  P        K ++  +S    
Sbjct: 72  IDRNHGDGSIDGQKSFDDLIKKLSTEDKQQISSTFAVKTPNGGTHIYFKYREGLKSKANY 131

Query: 124 -GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
              +DI   G   V  N   K  +E       +   + + P   +   +   +   +   
Sbjct: 132 VPGVDIRTDGGLIVLPNSSVKIGEETREYKIFNNTNINEIP---QTLFDKFLE-LDKPNK 187

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE--- 239
              K      PS  +   +  Q   +E+   +S            +   +          
Sbjct: 188 KKSKKVSEAKPSTIYKEGSRNQELFKEVIKIISKSSIR-------DITTITSITKGLNLL 240

Query: 240 -TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
                 + +EI++              N K +               +       +    
Sbjct: 241 KCNPPLEDEEISKIIGSISQRLHPSYCNEKGNI-----------NNYSLAEHIIENQPS- 288

Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK-AWYKKDKNNVYIWSLTLDKITASIMN 357
                               Y KG+  +  D K  +Y+                      
Sbjct: 289 --------------------YTKGNLWFIYDDKQGFYRY--------------------- 307

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
                           E         ++  N   +     +N        S +A  +   
Sbjct: 308 ---------------MEFKEVQRMFFKYAINDTDKTPIRSKNFAELLMLLSEDAREVHDE 352

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP-------FVEGEPSQEFL 470
                     ++   +G++D+E  + ++   +                 + +     EF 
Sbjct: 353 --------KCYINCLNGVIDIENNRLLEHGPQYKTEVQFQASLITDPKVWKDKFDKSEFK 404

Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
             ++        +       G+ L    +  Q     +G G +GKS   ++ +   G+  
Sbjct: 405 KFLNDIL-DNGSIKTLQEAWGVMLSPHAREVQNCFIYKGEGSNGKSVTFDIQEALIGDNK 463

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
            I         +        N ++    G  + I+ +   + +      K M  G+ +T 
Sbjct: 464 HI--------CSIGLGDFGENFAISVAEGKHVNIVRDDELSGKSVNKAFKSMCCGEPVTV 515

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN----------- 638
                +       + T F   N+     +    ++RR I+IPF+                
Sbjct: 516 NRKNKDL-VRLGFNMTMFFGLNRMPSASDKSTGFFRRPIIIPFNTSFGTEKEVAEGTRDK 574

Query: 639 -RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
            +D   + ++          W   G+    S    V +        EE R   D+  A+ 
Sbjct: 575 LKDTQISDRIINNELDLVFTWAYYGLNRVKSNNWKVTVSAAAENEMEEYRAEVDSAYAFF 634

Query: 698 DDCCDIGE--NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +   I     +      +   Y+ +  +        ++   +       G    +    
Sbjct: 635 KEKITIVPKKGMKIPKKDIYDIYNNWCTENHIA---PMNQTHLGRQFASFGVKSKV---- 687

Query: 756 IEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
                 S R    + L    E V    +I
Sbjct: 688 ----SNSVRYYLDI-LVDDLEPVPTQKDI 711


>gi|283469703|emb|CAQ48914.1| putative primase [Staphylococcus aureus subsp. aureus ST398]
          Length = 787

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/758 (13%), Positives = 230/758 (30%), Gaps = 85/758 (11%)

Query: 15  HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71
              +  +P  +   R        W +    S E        G GFV           DID
Sbjct: 38  QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDID 96

Query: 72  SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
           +  ++      +    +              L  F   K  +   +  + T   +++   
Sbjct: 97  NAIDEKGQINSELALKMMRLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154

Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
            ++                     +  + D   +    V+  FK    +   + ++  + 
Sbjct: 155 ARFMTVTGC------------TIGQNDICDNQEVLNTLVDEYFKENLPVNDVVREESNTN 202

Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242
                    ++    N  + +      ++   G+++ +       V   +H+      + 
Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKN 256

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
             + + I   ++     ++ +  N  W      E+    K + T  +       +IP+G 
Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTW---GQLELDKAIKNQKTIYTKSIDEFNVIPQGS 313

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
                     K + +                 +      +I      +   +I + +   
Sbjct: 314 KD-------VKQLLNQLGHEE-----------RTKMEENWIEEGKRGRKPTTI-SPIKCA 354

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSIT 418
                 L+    D+ +N+K   + F+     QN     +  S  +    S +A  +    
Sbjct: 355 YILNEHLTFILFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHL 414

Query: 419 SDLLD-----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----E 468
           ++++D     +S   +  ++G+ + +T Q    T +   T    T +            +
Sbjct: 415 TNMVDIKEKTNSPYLIPVKNGVFNRKTKQLESFTPDYIFTTKISTKYNPNVVRPNLNGWD 474

Query: 469 FLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           F   +       +E++      +  ++ G    ++ I   G G +GK T   LI    G 
Sbjct: 475 FDHWLYEIACADKEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGY 534

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDC 586
           + V + + ++               L  L G  +VI  +      I +++  K +  GD 
Sbjct: 535 KNVASLKVNEFD---------HEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDS 585

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
           +   +     Y       T     N      +      RR +++PF+    + + +   K
Sbjct: 586 VLVNVKNKQPYRT-EFRCTVIQSTNGMPKFTDKTGETNRRLLIVPFNADFNDSNENVDIK 644

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
            +        ++ L   KA   +     IP+V  K  E  +Q  D+   +  +  D    
Sbjct: 645 EKYLKDNHVLEYVL--YKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNI 702

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
                  +   Y  + E+     +  +S RT     ++
Sbjct: 703 QKVPKKVVYYRYRAFCEENGYMGK--MSDRTFYRRFEK 738


>gi|94970778|ref|YP_592826.1| primase P4-like protein [Candidatus Koribacter versatilis Ellin345]
 gi|94552828|gb|ABF42752.1| primase P4-like protein [Candidatus Koribacter versatilis Ellin345]
          Length = 799

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 90/635 (14%), Positives = 179/635 (28%), Gaps = 59/635 (9%)

Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG------- 218
               +  +     E  V   +        +  ++    Q  +  ++  +           
Sbjct: 189 RPWRLSAIVSKGSETAVTAQQLGSI-SSIRLSSHKTPEQADDLNLSRLMEFLDYYGVSVR 247

Query: 219 --EEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFE 275
                        I    A  H                  G            W  F  E
Sbjct: 248 SKPRSVRDGFRVEIECPWAEEHSGETRRDTTVSFIEGVGNGFHCLHSHCTERHWREFRTE 307

Query: 276 EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK 335
                  ++     LF    + +  G      + A     F                 Y 
Sbjct: 308 ------LEKRHPGRLFSFGPEAVFGGGSLPLIAHATLAEAFLRDNHDFVCI-------YD 354

Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
           + K  +  W  T   I+                +++  +D +     P    ++   R  
Sbjct: 355 QPKRPIAQWVKTRWDISEDDTLLW-------RAVADYLKDLHPRYPKPEKGPDS---RMR 404

Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVKPTKELYITK 454
             + +      + ++      +  +L D     LG  +  ++DL T       +E YIT+
Sbjct: 405 FYDAAFIGGVVRCVKPYLP-PVKGELFDRDPHLLGLPNCRLIDLRTNATRDMRREDYITQ 463

Query: 455 STGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
                     P+  F   +S        + +Y  R   + L      Q    + G G +G
Sbjct: 464 RIDVAPDPNCPTPRFDRFISEITCGDGPLANYLLRLCALCLTA-IPFQALFFLWGRGRNG 522

Query: 514 KSTLMNLIKYAFGNQYVINA--EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           K  L+  +    G+             +     EA K       L G R+  ++E+   +
Sbjct: 523 KGVLIRTLTAILGDGKFAWPLRPGEITVSKFGDEAAKRTF--ANLKGRRLATVNESVAGN 580

Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
            +N + +K ++GGD +T   N          +    +  N    +   D A+  R  +IP
Sbjct: 581 -LNTSMLKLISGGDTLTG-ANMRQDQQAFKPTHKVLLPTNDRPQLP-ADPAFRGRVHMIP 637

Query: 632 FDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
           F      R D +    L+          F+      I  GL    P   L   E+     
Sbjct: 638 FLANFTGREDTNLDHVLQHVELPGILYRFVTLCPDVIENGLRP--PASVLAETEQLFSEL 695

Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN---LKQKGF 747
           D  + + DDC +I +     +  + +  + +  ++        S+     +   L++   
Sbjct: 696 DITKQFRDDCLEIVDGAETPAADVERVVNSWVREQSTTGIVVSSSGREGPDDVILRELKH 755

Query: 748 IGGIKREKIEKEWKSKR--------IIKGLKLKPA 774
              IK  ++ ++                G++LK  
Sbjct: 756 QPDIKYSRLRRKTGETSPHGKGKAWYFVGVRLKEE 790


>gi|227487378|ref|ZP_03917694.1| phage/plasmid primase P4 family protein [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092602|gb|EEI27914.1| phage/plasmid primase P4 family protein [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 497

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 67/450 (14%), Positives = 129/450 (28%), Gaps = 26/450 (5%)

Query: 336 KDKNNVYIWSL--TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
                 ++W         T   +  +   K+      E+  D N N              
Sbjct: 56  YLGKVWHVWDGRKFARVPTDDDLRQVYLYKKLETAYYEKTPDRNSNEVVKTEVNPDSAML 115

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSD---LLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
             V +  K     +         I       L      +   +GILD  T +    T  L
Sbjct: 116 ARVIDPLKGLVMRRDGLDERHMWIQDTGRGDLPKGGLLIPMANGILDANTRKMYDHTPNL 175

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
             T      + +      +   V G  +  +    +    +G  + G  +A + + + G 
Sbjct: 176 VATWVLPFDYDKEAACPHWKKFVGGILDEDKTGQTFLQEWIGYLISGQTRAHKAVLVTGA 235

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
             SGK  + ++I+   G +       + +              L  L G     IS++ +
Sbjct: 236 PRSGKGVMASVIRALMGEENTAATTLTSLGG---------RFGLANLEGKNYAFISDSRD 286

Query: 570 NDEIN--AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
           ++       ++  +   D M      G        +    I  N      +  +A   R+
Sbjct: 287 SNMNAQATERLLSIIANDVMAVEPK-GKDIVTRRLNVRLMIFSNNVPRFPDSGNAIGTRF 345

Query: 628 IVIPFDK-PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEE 685
           I +      +   D    ++L          W L G+    + G     +P       E 
Sbjct: 346 ICLDLPHSHVGKEDQGLTERL-LGELPGILNWALDGLDRLRANGWKFTTLPGTHAGILET 404

Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
             +       ++ +      N       +   Y E+ E+    + K  +  T    LK  
Sbjct: 405 VNEQASPLTPYVRERLQFDPNAITALKEVYNDYKEWCEE---GNYKVSTKGTFKERLKAL 461

Query: 746 GFIG--GIKREKIEKEWKSKRIIKGLKLKP 773
              G   + R K+    K    ++G KL P
Sbjct: 462 RLDGVKVLSRTKVPSYDKLVDAVRGAKLNP 491


>gi|283768124|ref|ZP_06341039.1| primase superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus H19]
 gi|283462003|gb|EFC09087.1| primase superantigen-encoding pathogenicity islands SaPI
           [Staphylococcus aureus subsp. aureus H19]
          Length = 787

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 95/748 (12%), Positives = 225/748 (30%), Gaps = 81/748 (10%)

Query: 27  DKRPQRLGKWEEQLLSSEKIDKL-----------PACGFGFVCGVGEQPLYAFDIDSKDE 75
            K P  +  +     + +                   G GFV           DID+  +
Sbjct: 42  GKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDIDNAID 100

Query: 76  KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135
           K      +    +              L  F   K    +KK     +  +++    ++ 
Sbjct: 101 KKGQINSELALKMMQLTYCEKSPSGTGLHCFFKGKLPDNRKKKRTDLE--IELYDSARFM 158

Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195
                               +  + D   +    V+   ++F+E        ++    S 
Sbjct: 159 TVTGC------------TIGQSDICDNQEVLNTLVD---EYFKENLPVNDIVREE---SN 200

Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRGSSKG 246
           T    ++    N  + +      ++   G+++ +       V   +H+      +   + 
Sbjct: 201 TNMQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKNKQQM 260

Query: 247 KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
           + I   ++     ++ +  N  W   + ++     K   T  S+   +        +   
Sbjct: 261 ERIFLNYNNLTDKWESKRGNTTWGQLELDKAIKNQKTVYT-KSIDEFNVIQQGSKDIKQL 319

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK---ITASIMNFLVSMK 363
            +   ++    +            + W +++K      +++  K   I    + F++   
Sbjct: 320 LNQLGHEERTKM-----------EENWIEEEKRGRKPTTISPIKCAYILNEHLTFILFDD 368

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           E+   L+    D    +++           +    ++KA      L         ++   
Sbjct: 369 EENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHLTNMVDIKEKTN--- 425

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGY-F 477
            S   +  ++G+ + +T Q    T +   T    T +            +F   +     
Sbjct: 426 -SPYLIPVKNGVFNRKTKQLEAFTPDYVFTTKISTKYNPNVVRPNLNGWDFDHWLYEIAC 484

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
             +E++      +  ++ G    ++ I   G G +GK T   LI    G + V + + ++
Sbjct: 485 ADKEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGYKNVASLKVNE 544

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNT 596
                          L  L G  +VI  +      I +++  K +  GD +   +     
Sbjct: 545 FD---------HEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDSVLVNVKNKQP 595

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           Y       T     N      +      RR +++PF+    + + +   K +        
Sbjct: 596 YRT-EFRCTVIQSTNGMPKFTDKTGGTNRRLLIVPFNADFNDSNENVDIKEKYLKDNHVL 654

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
           ++ L   KA   +     IP+V  K  E  +Q  D+   +  +  D           +  
Sbjct: 655 EYVL--YKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNIQKVPKKVVYY 712

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQ 744
            Y  + E+     +  +S RT     ++
Sbjct: 713 RYRAFCEENRYMGK--MSDRTFYRRFEK 738


>gi|227542784|ref|ZP_03972833.1| phage/plasmid primase P4 family protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181410|gb|EEI62382.1| phage/plasmid primase P4 family protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 510

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 62/522 (11%), Positives = 155/522 (29%), Gaps = 46/522 (8%)

Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342
           K  T         +       A  ++D  N A+F+   K        T+   +    N  
Sbjct: 6   KHETKDITVAEKEEKGIITD-AEPWTDPTNPAVFADELKARLFTLGKTE---EHPGLNTL 61

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
           +    +      +    +   +++      P       K+           +N+      
Sbjct: 62  VLIGDVWHRWDGVKFARIKNDDELRQKYLYPRLKWARYKTVSTGKEKVPITKNLNPKKAM 121

Query: 403 KSTAQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
            +       G +F+I               + + ++   +  ++G+LD    +    T  
Sbjct: 122 LNDIIDPLRGIVFTIEGKDTHHMWIQDTNRNDIPTNGALIPMENGLLDANARRLYPHTPN 181

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFE-----------SEEVMDYFTRCVGMALLGGN 498
           L  T +    +        +   +    +                 +  +  G  + G  
Sbjct: 182 LIATWALPFSYDPKTTCPNWHAFLDDVLQVDAHNTGQLETDPLAKMFLQQWAGYLISGET 241

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
           +A + + + G   +GK  +  + +   G +       +++          +   L  + G
Sbjct: 242 RAHKAVIVTGAPRAGKGVMATVFQELMGKENSEVTTFTNL---------GSRFGLANIDG 292

Query: 559 SRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
            +   +S++ +   + +   ++  +   D M      G   +    +    I  N    +
Sbjct: 293 KKFTFMSDSRDGSLNRLATERLLSLIANDPMAVEPK-GKDITTRRLNTRLMIFSNNVPRM 351

Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
            +  +A   R+I +   K     +                 W L+G+    +       +
Sbjct: 352 PDSGNAIGTRFICLDLPKSHVGNEDQGLTDRLLGELPGILNWALEGLATLKANEWVFTSL 411

Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
           P+   K      +  +  Q ++++  ++        + L  +Y+++          RI+ 
Sbjct: 412 PQSHKKVLLTVNEQANPLQVFVNERVNLVPGAKIALNELHDAYNQWCNDGG---YNRINK 468

Query: 736 RTVTLNLKQKGFIGGIKREKIEKEWKSKRI--IKGLKLKPAF 775
            T    LK     G    E+   E   K++  +KG  L P +
Sbjct: 469 TTFKERLKALRLNGVKVAERTNMEGHLKKVDAVKGAMLIPNY 510


>gi|87161639|ref|YP_493509.1| putative DNA primase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|161509102|ref|YP_001574761.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|294850177|ref|ZP_06790913.1| primase [Staphylococcus aureus A9754]
 gi|87127613|gb|ABD22127.1| putative DNA primase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|160367911|gb|ABX28882.1| possible DNA primase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294822951|gb|EFG39384.1| primase [Staphylococcus aureus A9754]
 gi|315197253|gb|EFU27591.1| possible DNA primase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320142978|gb|EFW34770.1| nucleoside triphosphatase, D5 family [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 790

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 96/778 (12%), Positives = 231/778 (29%), Gaps = 96/778 (12%)

Query: 27  DKRPQRLGKWEEQLLSSEKIDKL-----------PACGFGFVCGVGEQPLYAFDIDSKDE 75
            K P  +  +     + +                   G GFV           DID+  +
Sbjct: 42  GKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDIDNAID 100

Query: 76  KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135
           K      +    +              L  F   K  +   +  + T   +++    ++ 
Sbjct: 101 KKGQINSELALKMMQLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDSARFM 158

Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195
                               +  + D   +    V+  FK        + ++  +     
Sbjct: 159 TVTGC------------TIGQSDICDNQEVLNTLVDEYFKENLPANEVVREESNTN---- 202

Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRGSSKG 246
                ++    N  + +      ++   G+++ +       V   +H+      +   + 
Sbjct: 203 --IQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKNKQQM 260

Query: 247 KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
           + I   ++     ++ +  N  W      E+    K + T  +       +IP+G     
Sbjct: 261 ERIFLNYNNLTDKWESKRGNTTW---GQLELDKAIKNQKTIYTKSIDEFNVIPQGSKD-- 315

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
                 K + +                 +      +I      +   +I + +       
Sbjct: 316 -----VKQLLNQLGHEE-----------RTKMEENWIEEGKRGRKPTTI-SPIKCAYILN 358

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSITSDLL 422
             L+    D+ +N+K   + F+     QN     +  S  +    S +A  +    ++++
Sbjct: 359 EHLTFILFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHLTNMV 418

Query: 423 D-----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDL 472
           D     +S   +  ++G+ + +T Q    T +   T    T +V  +   E         
Sbjct: 419 DIKEKTNSPYLIPVKNGVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWNIDRW 478

Query: 473 VSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           +        +V+    + +  ++ G    ++ I   G G +GK T   L+    G   + 
Sbjct: 479 IEEIACNDNQVVKLLWQVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELLSNVIGYSNIA 538

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTAR 590
           + + ++  +            L  L G   VI  +      ++  +  K +  GD +   
Sbjct: 539 SLKVNEFDE---------RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVE 589

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
                    +    T     N     ++      RR +++PF+        +F  K +  
Sbjct: 590 FKNK-PLYRATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYI 648

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
              +  ++ L        +    DIP+   K  E  ++  D    +  +  D        
Sbjct: 649 KNQQVLEYVLYKAINLDFE--TFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTIRKVP 706

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766
            + +   Y EY ++        +S+       +   + +     + + + E  +KRI 
Sbjct: 707 KYIVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 761


>gi|255693185|ref|ZP_05416860.1| phage/plasmid primase, P4 family domain protein [Bacteroides
           finegoldii DSM 17565]
 gi|260621078|gb|EEX43949.1| phage/plasmid primase, P4 family domain protein [Bacteroides
           finegoldii DSM 17565]
          Length = 559

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 63/473 (13%), Positives = 149/473 (31%), Gaps = 32/473 (6%)

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
               K I   +  + F + Y   ++   +K       D K  +++   ++ +       +
Sbjct: 5   KEILKEILDNIPKTDFKEIYAGGLYRRLEKET---DPDVKKLFQEKIYSIQVTDENKSVL 61

Query: 352 ---------TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
                           +++ +   +  ++   +         F      +    +  ++ 
Sbjct: 62  VVEKVKEVTEQLGYGLVINEEGTCYLYNKVFWEPINELDLKHFLGKAFQKMGADKYTARN 121

Query: 403 KSTAQSLEAGSIFSI-TSDLLDSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGT 458
              A  +   + +S+      D     +   +  L +      ++ + + + Y       
Sbjct: 122 VRIANRIHEQACYSLYKQTERDKGVVKINLTNTTLVIGHDGSVKEQEHSADDYFFYVLPY 181

Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
            +        F   +      ++V +     VG  L    K ++ +   G G +GKS   
Sbjct: 182 EYAPKAMCPMFQKFLDEVLPEKDVQEVLQEFVGCCLNPFIKLEKVLCCIGTGANGKSVFF 241

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
             I    G   V +   + +  ++           I +    +   S+ N          
Sbjct: 242 ETIMAVLGENNVSSYNINSLCDDKGYS-------RIMIKNKLLNYSSDFN-GKIWGNGIF 293

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
           KQ+  G+ + AR  Y +               N      +    + RR ++IPF   I+ 
Sbjct: 294 KQLASGEPVEARQLYQDPEM-VKGYARLAFNCNSIPTSSDSSYGFRRRLLMIPFGMKISK 352

Query: 639 R--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
              D   A+KL          W ++G++ +I  G  +         ++E ++ TD+   +
Sbjct: 353 EKADPDLARKL-RSELPGILLWAIEGLQRFIRNGKKLSSSPTIEALEQEYKEDTDSVVMF 411

Query: 697 I-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
           +       G+  ++    L   Y EY +       +  S   +   LK++G+ 
Sbjct: 412 LGSKHYIPGDKDFKRLSELYNEYKEYCKSN---SIRFESKSNLKNKLKEEGYT 461


>gi|21282480|ref|NP_645568.1| putative primase [Staphylococcus aureus subsp. aureus MW2]
 gi|300912574|ref|ZP_07130017.1| DNA primase domain protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|21203917|dbj|BAB94616.1| putative primase [Staphylococcus aureus subsp. aureus MW2]
 gi|300886820|gb|EFK82022.1| DNA primase domain protein [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 790

 Score =  213 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 91/776 (11%), Positives = 230/776 (29%), Gaps = 76/776 (9%)

Query: 15  HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71
              +  +P  +   R        W +    S E        G GFV           DID
Sbjct: 38  QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDID 96

Query: 72  SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
           +  ++      +    +              L  F   K  +   +  + T   +++   
Sbjct: 97  NAIDEKGQINSELALKMMRLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154

Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
            ++                     +  + D   +    ++  FK    +   + ++  + 
Sbjct: 155 ARFMTVTGC------------TIGQNDICDNQEVLNTLIDEYFKENLPVNDVVREESNTN 202

Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242
                    ++    N  + +      ++   G+++ +       V   +H+      + 
Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFDSSSEAVQSLLHYLAFYTGKN 256

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
             + + I   ++     ++ +  N  W   + ++     K   T  S+   +        
Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTWGQLELDKAIKNQKTVYT-KSIDEFNVIQQGSKD 315

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK---ITASIMNFL 359
           +    +   ++    +            + W +  K      +++  K   I    + F+
Sbjct: 316 VKQLLNQLGHEERTKM-----------EEKWIEGGKRGRKPTTISPIKCAYILNEHLTFI 364

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
           +   E+   L+    D    +++           +    ++KA      L         +
Sbjct: 365 LFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHLTNMVDIKEKT 424

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVS 474
           +    S   +  ++G+ + +T Q    T +   T    T +V  +   E         + 
Sbjct: 425 N----SPYLIPVKNGVFNRKTKQLESFTPDCIFTTKIDTSYVRQDIVPEINGWNIDRWIE 480

Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
                  +V+    + +  ++ G    ++ I + G G +GK T   L+    G   + + 
Sbjct: 481 EIACNDNQVVKLLWQVINDSMNGNYTRKKAIFLVGNGNNGKGTFQELLSNVIGYSNIASL 540

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLN 592
           + ++  +            L  L G   VI  +      ++ +   K +  GD +     
Sbjct: 541 KVNEFDE---------RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVEFK 591

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
                  +    T     N     ++      RR +++PF+        +F  K +    
Sbjct: 592 NK-PLYRATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYIKN 650

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
            +  ++ L        +    DIP+   K  E  ++  D    +  +  D         +
Sbjct: 651 PQVLEYVLYKAINLDFE--TFDIPDASEKMLEVFKEDNDPVYGFKVNMFDQWTIRKVPKY 708

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766
            +   Y EY ++        +S+       +   + +     + + + E  +KRI 
Sbjct: 709 IVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 761


>gi|307828927|gb|ADN95149.1| primase-like protein [Staphylococcus aureus]
          Length = 790

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 96/782 (12%), Positives = 237/782 (30%), Gaps = 88/782 (11%)

Query: 15  HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71
              +  +P  +   R        W +    S E        G GFV    +      DID
Sbjct: 38  QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDDNNFVCLDID 96

Query: 72  SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
           +  ++      +    +              L  F   K  +   +  + T   +++   
Sbjct: 97  NAIDEKGQINSELALKMMQLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154

Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
            ++                     +  + D   +    ++  FK    +   + ++  + 
Sbjct: 155 ARFMTVTGC------------TIGQNDICDNQEVLNTLIDEYFKENLPVNDVVREESNTN 202

Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242
                    ++    N  + +      ++   G+++ +       V   +H+      + 
Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKN 256

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
             + + I   ++     ++ +  N  W      E+    K + T  +   +    IP+G 
Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTW---GQLELDKAIKNQKTVYTKSINEFDAIPQGS 313

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
                     K + +                 +      +I      +   +I + +   
Sbjct: 314 KD-------VKQLLNQLGHEE-----------RTKMEEKWIEGGKRGRKPTTI-SPIKCA 354

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSIT 418
                 L+    D+ +N+K   + F+     QN     +  S  +    S +A  +    
Sbjct: 355 YILNEHLTFILFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHL 414

Query: 419 SDLLD-----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF---- 469
           ++++D     +S   +  ++G+ + +T Q    T +   T    T +V  +   E     
Sbjct: 415 TNMVDIKEKTNSPYLIPVKNGVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWN 474

Query: 470 -LDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
               +        +V+    + +  ++ G    ++ + + G G +GK T   L+    G 
Sbjct: 475 IDRWIEEIACNDNQVVKLLWQVINDSMNGNYTRKKALFLVGNGNNGKGTFQELLSNVIGY 534

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDC 586
             + + + ++  +            L  L G   VI  +      ++  +  K +  GD 
Sbjct: 535 SNIASLKVNEFDE---------RFKLSVLEGKTAVIGGDVPVGVYVDDSSNFKSVVTGDP 585

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
           +            +    T     N     ++      RR +++PF+        +F  K
Sbjct: 586 VLVEFKNK-PLYRATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIK 644

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
            +     +  ++ L        +    DIP+   K  E  ++  D    +  +  D    
Sbjct: 645 EDYIKNQQVLEYVLYKAINLDFE--TFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTI 702

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKR 764
                + +   Y EY ++        +S+       +   + +     + + + E  +KR
Sbjct: 703 RKVPKYIVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKR 759

Query: 765 II 766
           I 
Sbjct: 760 IY 761


>gi|150024492|ref|YP_001295318.1| hypothetical protein FP0387 [Flavobacterium psychrophilum JIP02/86]
 gi|149771033|emb|CAL42500.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
          Length = 463

 Score =  212 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 63/415 (15%), Positives = 141/415 (33%), Gaps = 23/415 (5%)

Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
             L K T      L    + ++  + E  ++  N     F      +      ++K  + 
Sbjct: 47  EILLKKTNEQKFSLCRKNDMIYLFNTECWEHINNDLFKDFLGQVALKIGVDRFDAKLHNF 106

Query: 406 AQSLEAGSIFSITSDLLDS--SSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFV 461
              L    I       + S   +  +   +G  ++   T    +  K  ++T      F 
Sbjct: 107 KDELLKQFISDARLKEIKSEIQTTLINLINGTFEINGTTQNIREFRKSDFLTYQLPFEFD 166

Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL--GGNKAQRFIHIRGVGGSGKSTLMN 519
                 +F++ ++     +E+ +  +  +G   +  G  K ++ + + G G +GKS L  
Sbjct: 167 PNAKCPKFMNFLNEVLPEKELQNVLSEYLGYIFIKNGVLKLEKVLLLYGTGANGKSVLFE 226

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
           +I    G   + N     +                 +    +   SE   N ++  +  K
Sbjct: 227 IICALIGKHNITNYSLQSLTDKDGYR-------RAMIANKLLNYASEI--NGKLEISFFK 277

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637
           Q+  G+ + ARL YGN               N+        +A++RR+I++PF   I   
Sbjct: 278 QLASGEPVEARLPYGNPLL-ITDYAKLIFNCNELPRDTEQTNAFFRRFIILPFRNTIPPE 336

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
            ++   A+++          W ++G+K  +    +    ++      + +  +D+   ++
Sbjct: 337 KQNKKLAEQIINDELSGIFNWVIEGLKRLLENE-NFTESQIIKNEVVQYQIESDSVLMFL 395

Query: 698 DD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
           +D   +   N       +   Y  Y  +         S +T +  +  KG     
Sbjct: 396 EDLEYEKSLNETVTVSFVYDEYKTYCRENG---YVFCSVKTFSQRIVNKGIERKR 447


>gi|118445168|ref|YP_879280.1| primase [Clostridium novyi NT]
 gi|118135624|gb|ABK62668.1| putative primase [Clostridium novyi NT]
          Length = 724

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 109/807 (13%), Positives = 220/807 (27%), Gaps = 148/807 (18%)

Query: 18  FKLIPLRLGDKRPQRLGKWEEQLLSSEKI------------DKLPACGFGFVCGVGEQPL 65
           +  IP+            W   + + + +                  G+  +CG     +
Sbjct: 20  YSKIPIIPWK----DENNWVNNIDAVQSLGSIYKKEINGETKGGQLTGYSLLCGKTSN-I 74

Query: 66  YAFDIDSKDEKTA----NTFKDTFEILHGTPIVRIGQKP------KILIPFRMNKEGIKK 115
              DID     ++      FK+  +        RI            +  +   KEG+K 
Sbjct: 75  IVIDIDVNHGDSSIDGIQNFKEFIKEFSNEDKKRILNTFVVITPRGGMHLYFKYKEGLKN 134

Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
           K    +    +D+   G   V      K              + +      +   + LF 
Sbjct: 135 KA---NYIPGVDVRTDGGLIVLPGSQVKVDG--------EILEYKANGKDIQYMPQVLFD 183

Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235
              ++  P  K + S    K +  +            +      E  + +   W+     
Sbjct: 184 KLLKLDKPSQKKETSKKIQKDFKADKY----------YKPVKEGEGRDNTLISWL--GYM 231

Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295
           + +     +K   +      Q   Y+   F     +F+  E    +  +    S     G
Sbjct: 232 IKNNPNMRTKEALL-----PQAVMYNRCWFEPPL-SFEIVEKKIESVIKYALPSYCDEKG 285

Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT-KAWYKKDKNNVYIWSLTLDKITAS 354
            +    L+     +         Y KG+  +  DT K +YK                   
Sbjct: 286 HINNWALVQYIIKEQ------PSYTKGNLWFIYDTEKGFYKY------------------ 321

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
                              E         ++  N   +     +N        S +A  I
Sbjct: 322 ------------------MELREVQKMYFKYALNDKDKTVTRSKNFAELLMLNSSDARDI 363

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ----EFL 470
                        ++   +GI+D+E+ + +    +          ++     +    EF 
Sbjct: 364 HDEKK--------YINCLNGIIDIESDELLPHDPKYKTEIQFQANYISEWKDKFNNSEFK 415

Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
             +      E  +       G+ L   ++  Q     +G G +GKS   ++ +    +  
Sbjct: 416 KFLDTTL-DEGSITTLQESWGLMLSPHSREVQNCFIYKGEGSNGKSATFDIQEALIKDNK 474

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
            I         +           +    G  + I+ +   + +      K M  G+ +  
Sbjct: 475 YI--------CSIGLGDFGEPFVISMAEGKHVNIVRDDELSGKTVNKFFKSMVCGEPILV 526

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN----------- 638
                +       + T F   N+     +    ++RR I+IPF+                
Sbjct: 527 NRKNKDL-VRLGFNMTMFFGLNRLPSAADKSTGFFRRPIIIPFNVSFGTEKEVKEGTRDK 585

Query: 639 -RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
            +D   A ++          W  +G+K   S    V + E   +  EE RQ  D+  A+ 
Sbjct: 586 LKDTQLADRIIQNELDLVFMWAYEGLKRVKSNKWKVTVSESSEQEMEEYRQEVDSSYAFF 645

Query: 698 DDCCDIGE--NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +   I           ++   Y ++  +    D   ++        K  G         
Sbjct: 646 KEKLKIEPKSGEKILKDNVYNRYLQWCSE---SDITPMNKVQFGRQFKSFG--------V 694

Query: 756 IEKEWKSKRIIKGLKLKPAFESVDDNS 782
            EK   S+R    +      E V D  
Sbjct: 695 KEKVSNSRRYWIDICF-IDLEEVQDGK 720


>gi|298674413|ref|YP_003726163.1| phage/plasmid primase [Methanohalobium evestigatum Z-7303]
 gi|298287401|gb|ADI73367.1| phage/plasmid primase, P4 family [Methanohalobium evestigatum
           Z-7303]
          Length = 545

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 69/472 (14%), Positives = 156/472 (33%), Gaps = 32/472 (6%)

Query: 307 FSDAYNKAMFS--IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
           F D     +    +          D        K   ++     ++I      F +   +
Sbjct: 98  FDDIIKNKIIDEVLENTEPTRAKKDDPYNKYFSKKGKFVVKYLAEEILRENHFFTLKDTK 157

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
           +V+         N   +  +       +       S  K     ++  ++  +  + +++
Sbjct: 158 EVYYYQNGVYLPNGIDEISK---QVQDKLDEHYRKSYKKEVIDYIKTKAL--VDRESINN 212

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484
           +   +  ++G+ D+  G+ +  + +   T      +            +S   +S++   
Sbjct: 213 NKYIINLKNGLYDVSKGKFLPHSPKYMSTIQLPVYYKPEAECPNIEKFLSDVTKSDKDKQ 272

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                +G  L+   + Q+F+   G    GKS L+ LI    GN  V      ++  +   
Sbjct: 273 LIFEWIGYTLIPNTRLQKFVMFYGPRDGGKSVLIKLITCLLGNYNVSGESLQNLEND--- 329

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLNYGNTYSESPAS 603
                + S+  L G  +    +  +      + IK MTG D  +   +     Y     +
Sbjct: 330 -----DFSIANLEGKLLNAFPDLPDYGFYQNSVIKIMTGDDGYIRVNIKKVQPYKT-TIT 383

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLET-KYTLEAKKWFL 660
                  N    ++NPD+A+++R ++I F        +D +   KL T +         +
Sbjct: 384 ARLMFSTNNLPVIKNPDEAFFKRLMLIEFPNTFQGDSKDVNLIDKLTTSEELSGLLNKAI 443

Query: 661 KGVKAYISKG-LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
             ++  +  G    D+    L+  E  ++ ++    + D+ C    N +     +  +Y 
Sbjct: 444 AALERLLKNGEFSYDLNP--LENMELYQKLSNPVAKFADE-CVGESNEYTFKVDMYNAYV 500

Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           E+ E+E   D   +         K  G+     R+             G+ L
Sbjct: 501 EWCEKE---DIVPLKKNEFGKQFKNLGY-----RDSRLNTGDRSYCWDGVSL 544


>gi|126660109|ref|ZP_01731229.1| hypothetical protein CY0110_30895 [Cyanothece sp. CCY0110]
 gi|126618629|gb|EAZ89378.1| hypothetical protein CY0110_30895 [Cyanothece sp. CCY0110]
          Length = 1031

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/505 (16%), Positives = 165/505 (32%), Gaps = 41/505 (8%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----LTLDKITASIMNFLVS 361
           ++++       +   K   +Y   TK WY  +     IW       L++     ++ LV 
Sbjct: 319 KWNEKRVCEYLASLYKDRLIYEGTTKDWYLYNAEKEGIWDLITKERLEQRLMLELDGLVD 378

Query: 362 MKEDVF-----DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
             E +       +S     N   S+          +   + +       A       +  
Sbjct: 379 KAETISQQIQTAISAVKGSNRDRSQKSELIEQLKAQIPKISDYKFTFVEAIGKRLSRVLL 438

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
           +     +S    +  ++G+LDLET +    +   Y+T      +            +   
Sbjct: 439 VNEMSTNSQKGLIPFRNGVLDLETRELWPHSPTNYLTWCLPYDYNPLASCNPIKQWLLEM 498

Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
               E +++     +   + G    Q+F+ + G GGSGKSTL  L     G + V   + 
Sbjct: 499 MEGDETLVNLIRAYLHGIVTGRADWQKFLALCGPGGSGKSTLTKLAIALVGAENVHVTDL 558

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             + +++             +   R+VII+E      +   K+K +TGGD +     Y  
Sbjct: 559 DILEKDK--------FETANIKDKRLVIINEATSYRGVK--KLKALTGGDRLRFEQKYKQ 608

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET------ 649
             +         I  N+ +   +     +RR I +  ++ IA RD       +       
Sbjct: 609 ALASFYPDALVIITSNEPIKTGDHTSGLYRREIPLSMNRRIAERDQRKLIDHDRDNNLTG 668

Query: 650 ---KYTLEAKKWFLKGVKAYISKGLDVDIPEVC--LKAKEEERQGTDTYQAWIDDCCDIG 704
               Y      W L+      +  +   +      LK+K E    T++  AW+++     
Sbjct: 669 EFAPYIPGLLNWVLEMDSNDATTIIKDPLNYAVGLLKSKLENLIDTNSIAAWLNEKITYI 728

Query: 705 ENLWEE---SHSLAKS------YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           +    +      L +S      Y+ Y +         IS    +  L        +    
Sbjct: 729 DRYETQIGCKSPLGESKENIWLYANYCQYCSLSGINTISLTRFSYLLLDLC-NNQLGFTV 787

Query: 756 IEKEWKSKRIIKGLKLKPAFESVDD 780
            +   +    I+GLK++   +    
Sbjct: 788 RKGRDRKGAFIQGLKIRDHLDEDLP 812


>gi|255325885|ref|ZP_05366977.1| phage/plasmid primase, P4 family domain [Corynebacterium
           tuberculostearicum SK141]
 gi|255297097|gb|EET76422.1| phage/plasmid primase, P4 family domain [Corynebacterium
           tuberculostearicum SK141]
          Length = 475

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 68/458 (14%), Positives = 154/458 (33%), Gaps = 34/458 (7%)

Query: 325 LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384
           +++ +        +   ++++ T  +   + +     +K  ++    E        K   
Sbjct: 25  VFSTEGNRNTAYWRGQWWLFNGTHWEQEENELE----VKRPIWTRLGEV--MLSKPKGAE 78

Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444
            W  T     N+ E     +     +  + F I    + +    +  Q+G+L+  TG+ +
Sbjct: 79  PWSPTTASVSNLME-PLKIALMLKDKKDAPFWIEQGHIMNPHDLIVLQNGVLNFRTGKFM 137

Query: 445 KPTK-ELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502
           +    EL+ T S    +        F   +   F              G A+ G    Q+
Sbjct: 138 QGNHMELFNTWSLPFSYDATATCPTFEKFLDDTFAHDPAGRAAIQEFAGYAISGRTDLQK 197

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
            + + G  G GK TL   I+   G + V++   + +          +   L  L+G  + 
Sbjct: 198 ALVLVGPPGGGKGTLSRTIQQLVGVENVVSPSLTKL---------GSEFGLSDLIGKPLA 248

Query: 563 IISETNENDEINAA----KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
           +I +   +    +     ++  + G D ++      + ++ +  +    +V N+     +
Sbjct: 249 VIEDARSDYSHTSGTTVERLLSIIGEDAVSINRKNQSYWNGTLPT-RIMLVSNEVPRFPD 307

Query: 619 PDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
              A  RR++ +   K +    RD     KL          W L G+K    +      P
Sbjct: 308 ASGAMIRRFVAVKLSKSVPEEERDEKLGAKL-KAELPGIFNWALDGLKRLEQQ-HHFTEP 365

Query: 677 EVCLKAKEEERQGTDTYQAWIDD----CCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
           E     +            ++D+          + + E  ++  +Y  + E+     R  
Sbjct: 366 ETMADIQSMMSDLNSPVANFLDEEPTYRVTGNPSDYVELKAVHAAYKSWCEEVG---RSN 422

Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
           ++ + +   L        +K  K +   K  R + G+K
Sbjct: 423 MNQQNLAQQLDSVSPDIEVKNTKPDAYTKKGRYVFGIK 460


>gi|293569187|ref|ZP_06680491.1| phage/plasmid primase, P4 family protein [Enterococcus faecium
           E1071]
 gi|291588099|gb|EFF19943.1| phage/plasmid primase, P4 family protein [Enterococcus faecium
           E1071]
          Length = 468

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 71/518 (13%), Positives = 162/518 (31%), Gaps = 62/518 (11%)

Query: 270 DTFDFEEIGDTAKKRSTFTSL------FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
              D  +I       +   S+      F+   + IPK L    F++     +        
Sbjct: 4   KEMDNTQIFKNYLNPTKLRSVEEVKKAFFMLIEAIPKNLTEEAFNEQVADLIIEYTHMVM 63

Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
                 T   Y  +      ++    +    I  +L  +  +V    +E     +   + 
Sbjct: 64  LK---STNGVYIYN------YTTHRWESKGEI--WLQRLVYEVTKSVDETNLWYRERNTC 112

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443
                     +   +                             +L   +G  D  TG+ 
Sbjct: 113 EHIKRKLCMLETFSD----------------------------DYLVLTNGTFDRRTGEI 144

Query: 444 VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502
           ++     Y    +   +   +    FL  ++  F   +  + +     G  LL  ++A  
Sbjct: 145 IESQSNHYAYFFSTVVYDSEKKCARFLQFLNEVFYSDQSTIAFVQEWFGYVLLSSHQANA 204

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
           F+   G G +GKS L  L+    G     ++            A ++   +  +    + 
Sbjct: 205 FLIGYGSGANGKSLLFALLAKLVGECNTSSS---------GISAFQSRFGMEVMHNKLLN 255

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
           + +E++ N     A +K +T G+ +T         +    +     + N    + +    
Sbjct: 256 LATESDVNS-FETATLKAVTAGEPITLNRKGIKEITCILPT-KFIFLMNHLPLITDSSYG 313

Query: 623 WWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
           + RR +++PF +      +D    +K+          + L+G K  I  G    I ++  
Sbjct: 314 FSRRLLILPFPRTFRPEEQDPFLLEKMTL-ELSGILNFALEGAKRLIKNGYQFTISDLMN 372

Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
           +AKE+          +             ES+ L +++ +  +++    R+  + R+   
Sbjct: 373 EAKEQFLGCVHPLSYFKAHYLSKNPTRKVESNLLFQTFQKMLKEKNWSARQYGTLRSFNK 432

Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
            L +             K+   K  + G+ L  + + +
Sbjct: 433 GLIEL--FEAEGFVISTKKSNGKTYLSGIVLNQSIQEL 468


>gi|298695297|gb|ADI98519.1| Putative DNA primase [Staphylococcus aureus subsp. aureus ED133]
          Length = 790

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 90/776 (11%), Positives = 230/776 (29%), Gaps = 76/776 (9%)

Query: 15  HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71
              +  +P  +   R        W +    S E        G GFV           DID
Sbjct: 38  QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDID 96

Query: 72  SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
           +  +K      +    +              L  F   K  +   +  + T   +++   
Sbjct: 97  NAIDKKGQINSELALKMMQLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154

Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
            ++                     +  + D   +    ++  FK    +   + ++  + 
Sbjct: 155 ARFMTVTGC------------TIGQSDICDNQEVLNTLIDEYFKENLPVNDVVREESNTN 202

Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242
                    ++    N  + +      ++   G+++ +       V   +H+      + 
Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFKSSSEAVQSLLHYLAFYTGKN 256

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
             + + I   ++     ++ +  N  W   + ++     K   T  S+   +        
Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTWGQLELDKAIKNQKTVCT-KSIDEFNVIQQGSKD 315

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK---ITASIMNFL 359
           +    +   ++    +            + W ++ K      +++  K   I    + F+
Sbjct: 316 IKQLLNQLGHEERTKM-----------EENWIEEGKRGRKPTTISPIKCAYILNEHLTFI 364

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
           +   E+   L+    D    +++           +    ++KA      L         +
Sbjct: 365 LFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHLTNMVDIKEKT 424

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVS 474
           +    S   +  ++ + + +T Q    T +   T    T +V  +   E         + 
Sbjct: 425 N----SPYLIPVKNDVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWNIDRWIE 480

Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
                  +V+    + +  ++ G    ++ + + G G +GK T   L+    G   + + 
Sbjct: 481 EIACNDNQVVKLLWQVINDSMNGNYTRKKALFLVGNGNNGKGTFQELLSNVIGYSNIASL 540

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLN 592
           + ++  +            L  L G   VI  +      ++  +  K +  GD +     
Sbjct: 541 KVNEFDE---------RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVEFK 591

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
                  +    T     N     ++      RR +++PF+        +F  K +    
Sbjct: 592 NK-PLYRATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYIKN 650

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
            +  ++ L        +    DIP+   K  E  ++  D    +  +  D         +
Sbjct: 651 QQVLEYVLYKAINLDFE--TFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTIRKVPKY 708

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766
            +   Y EY ++        +S+       +   + +     + + + E  +KRI 
Sbjct: 709 IVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 761


>gi|67921707|ref|ZP_00515224.1| Phage/plasmid primase P4, C-terminal [Crocosphaera watsonii WH
           8501]
 gi|67856299|gb|EAM51541.1| Phage/plasmid primase P4, C-terminal [Crocosphaera watsonii WH
           8501]
          Length = 1013

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 84/569 (14%), Positives = 182/569 (31%), Gaps = 58/569 (10%)

Query: 243 SSKGKEIARRWSKQGSTYDEENFN--YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
           S+  K +   W  +    D+       +W TF + + G                 K+ P 
Sbjct: 259 SAYCKVLFLSWDTEEKGIDDAIVANGSEWFTFVWAKRGIKP-----------APIKIAPL 307

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----LTLDKITASIM 356
                ++++       +   K   +Y   TK WY  +     IW       L++     +
Sbjct: 308 EHNLPKWNEKRVCEYLADLYKDRLIYEEVTKDWYLYNAEKDGIWEQISKERLEQRLMLEL 367

Query: 357 NFLVSMKEDV-----FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
           + L+   + +       ++     N   ++          +   V +       A     
Sbjct: 368 DALIDKAQTITNQIIKAINAVKTSNRDKTEKGDIIEQLKQQLPKVSDYKFTFVEALGKRL 427

Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
             +  +     +S    +  ++G+LDL+T + +  + + Y T S    +           
Sbjct: 428 SRVLLVKEMATNSQQGLIPFRNGVLDLDTRELLPHSPQNYFTWSLPYDYNPLAQCNPIKQ 487

Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            +       E +++     +   + G    Q+F+ + G GGSGKSTL+ L     G + V
Sbjct: 488 WLLEMMEGDESLVNLIRAYLHGIVTGRTDWQKFLALCGPGGSGKSTLIKLAIALVGFENV 547

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
              +   + +++             L   R+VII+E      +   K+K +TGGD +   
Sbjct: 548 HVTDLDILEKDK--------FETSNLKDKRLVIINEATSYKGVK--KLKALTGGDRLRFE 597

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET- 649
             Y    +         I  N+ +   +     +RR I +  ++ I +++       +  
Sbjct: 598 QKYKQALASFYPDALVIITSNEPIKTGDYTSGLYRREIPLSMNRRIPDKEQKKLIDHDRQ 657

Query: 650 --------KYTLEAKKWFLKGVKAYISKGLDVDI---PEVCLKAKEEERQGTDTYQAWID 698
                    +      W L+      ++ +       P +     +     T++  AW++
Sbjct: 658 NNIIGEFAPHIPGLLNWVLEMDSEMATQIIKDPYNYAPALLKSKLDNLM-DTNSIAAWLN 716

Query: 699 DCCDIGENLW----------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
           +                   E    +   Y+ Y     +     IS    +  +      
Sbjct: 717 EKIIYEPKYQTQVGCKSPLGESKEEIW-LYASYCAYCASAGINTISLTRFSYLVLDLC-N 774

Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPAFES 777
             +    I+     K  I+GLK++   + 
Sbjct: 775 NQLGLPIIKDRNNVKTYIEGLKIRDHLDE 803


>gi|320166048|gb|EFW42947.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 766

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/558 (16%), Positives = 200/558 (35%), Gaps = 39/558 (6%)

Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
           +    + +     E      + + +   ++         +   E    L       Y   
Sbjct: 214 TPLQSDTIDALTAEAAEKRAQQRAARQIARGSERQLKHWF--EEAEEILMDHLGPEYYND 271

Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285
           + +W  V+  +      +++  ++ +R+S Q      + ++ K+D F    +        
Sbjct: 272 YQKWFNVLAVIKTVFGDTAEAYDLCKRFSAQAGN---KEWDEKFDGFWERNLCA--DNGW 326

Query: 286 TFTSLFYH----HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA---DTKAWYKKDK 338
           T  +L+            + ++ +   D  +  + ++  +      +       +Y  D+
Sbjct: 327 TMKTLYKMVGGSSKLKCNEKVINNLGDDQRDAELLAMLLEDRLTSVSVQEKEAEFYLYDE 386

Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
                 +  L K    +   +  +         +   +    K        + +    + 
Sbjct: 387 ------AEALWKKK--VSTQMNVLVSQTMQKYLQGWIDEYKCKISEASQLAEEKIDQ-KT 437

Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVKPTKELYITKSTG 457
             KA +    L+     +     LDS+   L   D  ++DL  G+     KE Y + +  
Sbjct: 438 RKKAAAITHKLQTLLYDAQFKVKLDSAENLLPIADRKVVDLTNGEVRDRMKEDYFSLALS 497

Query: 458 TPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKS 515
             +  G+ +       S       + ++     +G +L G NK+     + G  G +GKS
Sbjct: 498 VSYEPGKGTAVADKFFSEIMLDRADRIEQLRLSLGYSLFGHNKSNLMFFLYGPDGSNGKS 557

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
            L+N++    G        +  I + R  ++  A+P  ++L+G R+  +SE  E   +N 
Sbjct: 558 LLLNILTEIVGEFRATVDPSIIIGKTRLDQS--ASPYTMQLIGKRLGFMSELPEESVLNE 615

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           A +KQ+TG D MTAR NYGN + E        +  N    +++   + WRR  ++ FD  
Sbjct: 616 AMVKQLTGADVMTARQNYGNAF-EFSCYAKMLLATNYLPNMKD-SPSLWRRVRMVKFDAC 673

Query: 636 IANR--------DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
                       + ++ + +      +   W + G   Y +KG  +++P       +  R
Sbjct: 674 FVENPTGSQKKINVNYMRDIAKPNINQFFTWMVNGAIEYSNKG-TIEVPADITAFIKGLR 732

Query: 688 QGTDTYQAWIDDCCDIGE 705
             ++  + +ID C    +
Sbjct: 733 LKSNPVKLFIDKCVVFDK 750


>gi|144900032|emb|CAM76896.1| gp9a [Magnetospirillum gryphiswaldense MSR-1]
          Length = 896

 Score =  208 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 121/334 (36%), Gaps = 21/334 (6%)

Query: 423 DSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-- 477
           D  +  +  ++G L +      + +    + Y+T      +        F   +   F  
Sbjct: 548 DEPAPVINCRNGELWISGDGSTRLLPHRFDTYLTYVLDVDYDPAATCPRFDRALLDIFAR 607

Query: 478 --ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
             +  ++  +F    G A+        +  +RG G +GK+ LM  I+     + + +   
Sbjct: 608 STDPADMARHFMEFFGYAIQPRRDIACYFMLRGQGNNGKTKLMQTIERLINKRAIYS--- 664

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
                +R         ++  L G  I++  + + +  +    +K+++    +T +L + +
Sbjct: 665 -----DRMANIESDRFAIGSLAGKLILLDDDVDTDTLLPDGFLKKVSERKILTGQLKFKD 719

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTL 653
            + E  A+  P ++ N +    +      RR  +IPFD+   +  +D      +      
Sbjct: 720 AF-EFVATCLPVMLANNYPRCSDLSWGQRRRAKIIPFDRIFTDADKDDRLFPGIWANELP 778

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
                 ++G++    +      P  C KA  +     +    +I++ C         + +
Sbjct: 779 GVLNRAIEGLQRL-RQRSGFAEPTDCRKAMNDWLAHANPLAGFIEETCRADLAASVPTSA 837

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
               + E+ E+     R   +  T+  NL+  G+
Sbjct: 838 FYTRFREWAEEAG--IRNIPARNTIKRNLENLGY 869


>gi|255323765|ref|ZP_05364891.1| phage/plasmid primase, P4 family domain [Corynebacterium
           tuberculostearicum SK141]
 gi|255298945|gb|EET78236.1| phage/plasmid primase, P4 family domain [Corynebacterium
           tuberculostearicum SK141]
          Length = 512

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 64/460 (13%), Positives = 156/460 (33%), Gaps = 32/460 (6%)

Query: 336 KDKNNVYIWSLTLDK-ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
             + + +++S T  + ++ S  +  + +   +  + +    + K S +      +  R +
Sbjct: 65  YWRGDWWMYSGTHWEAVSGSAKDADLVIAGQLLKVFDSAVYSKKESNTVTLVPWSPNRSK 124

Query: 395 NVEENSKAKSTA-----QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
             E     K  A      + +A       + L  +   ++   +G+L   T + V  T  
Sbjct: 125 ISEIIFALKPLAYAVVSDTDDAPCFLRDCAQLPGAPGEYVSMSNGLLRWSTRELVGHTPR 184

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
           ++ T S    +     +  +   +   F      +D     +G  + G     + + I G
Sbjct: 185 VFTTYSLPFAYDPQATAPVWEKFLKQIFAHDTAAIDTLQEYLGYVISGRTDLHKALLIVG 244

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
              +GK T++ +++   G Q V +     +  +  P           L+G  + II +  
Sbjct: 245 PTRAGKGTILRVLRQLVGQQNVTDTSLHSLGSDSGP---------AELIGKPLAIIGDAR 295

Query: 569 ENDEIN----AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
           +    N       +  + G D ++ +  Y   +     +    +  N    + +   A  
Sbjct: 296 DARAGNSNRATELLLNVIGEDGVSLQRKYLGDWVGRLPT-RFALASNVIPRLIDSSAAVV 354

Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
            R++++  ++  A ++                 W L G++    +G     P    + K+
Sbjct: 355 GRFVMMRLEQSFAGQEDEELGAKLAAELPGILNWALDGLERLEQQG-RFTEPATMAEMKD 413

Query: 685 EERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQEL------NYDRKRISTR 736
                +   + +I++  ++            +   +  +                R++  
Sbjct: 414 AMEGLSAPVRRFIEEYLEVTGNPADIVPRRDVYSHWRTWHADNGFTPCNQEEMCNRLTAT 473

Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL-KPAF 775
              +  KQ   + G K +  +K    +R I G+KL K AF
Sbjct: 474 DGRIRAKQLD-VPGAKPKPGQKRPPRERYILGVKLVKSAF 512


>gi|229551169|ref|ZP_04439894.1| DNA primase [Lactobacillus rhamnosus LMS2-1]
 gi|229315461|gb|EEN81434.1| DNA primase [Lactobacillus rhamnosus LMS2-1]
          Length = 463

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 133/358 (37%), Gaps = 32/358 (8%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL---DLVSGYFESE 480
           +    +   +G  +L T        E YI +    P+     S + L   D ++      
Sbjct: 123 ADPNLITFANGTYNLVTDTLQPHRPEDYILQ--NHPYDLKMKSGKDLKTVDWLAHLTGDP 180

Query: 481 EVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
              ++    +G          Q  I ++G G +GK+T +  +K     + V N    D+ 
Sbjct: 181 ISANFLMEFIGYCFYHRYSPFQALIILQGTGQNGKTTFIEFVKQILDKRNVSNVALQDLA 240

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
                  G       +L    + + ++ +++      +IK +TG D + A     + +S 
Sbjct: 241 NKDNRFTGS------QLYQKEVNMFADLDDSFLKTTGQIKALTGDDTIFAEFKGKDGFS- 293

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK----YTLEA 655
                      NK     +    + RR  V+PF K I   D +F ++ +           
Sbjct: 294 FMNFAKLIFSANKLPKFSDFTSGFIRRLYVVPFPKKI---DNNFKKEFDLNQIYDEIPAF 350

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC--DIGENLWEESHS 713
               L+  K  I +   +      + AKE+  + +D    +I+D C  ++  N  + S +
Sbjct: 351 SYQCLRAFKRAIDRD-SLSKSPSMIAAKEQWLKDSDNIARFIEDRCRIELDTNGGDSSRN 409

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           + K+Y +Y  +E   + K  S    T  L+ +G        + + ++ + RI + L L
Sbjct: 410 IYKAYQDYCWEE---NIKPFSQPEFTRRLEAQGIP------RKKVQFNNTRIWRYLHL 458


>gi|126659382|ref|ZP_01730517.1| hypothetical protein CY0110_15055 [Cyanothece sp. CCY0110]
 gi|126619341|gb|EAZ90075.1| hypothetical protein CY0110_15055 [Cyanothece sp. CCY0110]
          Length = 1044

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 165/521 (31%), Gaps = 47/521 (9%)

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS-LTLDKITASIMNFL 359
            +    +++           K   ++  + K WY  +     +W+  T  ++   I+  L
Sbjct: 306 EMNRLEWTEKGLTDYLVSMYKDRIIFNGEIKEWYLYEDETKGVWTPRTKMEVEQRILFDL 365

Query: 360 VSMKEDVFDLSEE-----PEDNNKNSKSPRFWFNTDYRRQNVEEN-SKAKSTAQSLEAGS 413
             + +++ ++ E+           N +           ++ + ++ +      ++L    
Sbjct: 366 NDLTDEIDNVREQVLKAIKAVEESNREKKEKIEIMKQLKKQLPKSRTYTIRFVENLRRHI 425

Query: 414 IFSITSDLLDSS--SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
              + +  + ++     +  ++G+LD+   + +  +   Y T S    +      +    
Sbjct: 426 STVLLTKKMQTNSIEGIIPFRNGVLDIARKELLPHSPTNYFTWSLPYDYNPLATGEPIKQ 485

Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            +       E +++     +   + G    Q+F+ + G GG+GKSTL+ L     G    
Sbjct: 486 WLLEMMQGDESLVELIRAYLHGVVTGRADWQKFLELIGPGGTGKSTLIRLAIALVGFSNC 545

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
                  +  ++             +   R+V++++       +   +K +TG D +   
Sbjct: 546 HVTTLKRLETSK--------FETANIKDKRLVLVTDAERYTG-DVTTLKALTGEDSLPYE 596

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE-- 648
                            I  N+H+   +      RR I +   + I+  +     K +  
Sbjct: 597 KKMQQATGGFKPDCLVIIAGNEHIKTADYTSGLQRRRITVGMKRKISEENQKNLIKHDNQ 656

Query: 649 -------TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE--EERQGTDTYQAWIDD 699
                    Y      W L+      S+ +            E  E     +   AW+++
Sbjct: 657 GNISGEFVPYIPGFLNWVLEMESESASECIKNAHKRCVKLTLERIESMVENNPIAAWLNE 716

Query: 700 CCDIGENLWE---------ESHSLAKS-----YSEYREQELNYDRKRISTRTVTLNLKQK 745
                 + +          E+  +        Y  Y           IS    +  L   
Sbjct: 717 NIIYDPDSYTHVGKAIASKENDEVYIGASKWLYPNYCAFCEGIKVNPISLNRFSTLLLDL 776

Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
                   +  +   ++   I+GLK++   + +DD+   I+
Sbjct: 777 CNHQLNLGDVTKDRNRNGVFIQGLKIR---DHLDDDKPFIE 814


>gi|126659986|ref|ZP_01731109.1| hypothetical protein CY0110_01600 [Cyanothece sp. CCY0110]
 gi|126618751|gb|EAZ89497.1| hypothetical protein CY0110_01600 [Cyanothece sp. CCY0110]
          Length = 1031

 Score =  207 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 83/507 (16%), Positives = 165/507 (32%), Gaps = 45/507 (8%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW----SLTLDKITASIMNFLVS 361
           ++++           K   ++  +TK WY        IW    +  L++        L  
Sbjct: 319 KWNEKGVVKYLVELYKDRLIFDKETKEWYLYSAEIEGIWKIISTEELEQRILLEFTHLDQ 378

Query: 362 MKEDVF-----DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
           + ED+       +    E +  N +          + Q  +E        QS+       
Sbjct: 379 VVEDIRSQIGKAIKAVKESSRSNKEKTEIIGQL--KAQTPKEFDYTIRLVQSIGKHLSRK 436

Query: 417 ITSDLLDSS--SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
           + +  + S      +  ++G+LD+ET +    +   Y+T      F            + 
Sbjct: 437 LLTPQMQSHSQKGLIPFRNGVLDIETKELWPHSPTNYLTWCLPYDFNPLASCNPIKQWLL 496

Query: 475 GYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
                   +++     +   + G    Q+F+ + G GGSGKSTL  L     G + V   
Sbjct: 497 EMMEGDATLVNLIRAYLHGIVTGRADWQKFLALCGPGGSGKSTLTKLAIALVGAENVHVT 556

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
           +   + +++             +   R+VII+E      +   K+K +TGGD +     Y
Sbjct: 557 DLDILEKDK--------FETANIKDKRLVIINEATSYKGVK--KLKALTGGDRLRFEQKY 606

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET---- 649
               +         I  N+ +   +     +RR I +  ++ IA RD       +     
Sbjct: 607 KQALASFYPDALVIITSNEPIKTGDHTSGLYRREIPLTMNRRIAERDQKKLIDHDRDNNL 666

Query: 650 -----KYTLEAKKWFLKGVKAYISKGLDVDIPEVC--LKAKEEERQGTDTYQAWIDDCCD 702
                 Y      W L+      ++ +   +      LK+K E    T++  AW+++   
Sbjct: 667 TGEFAPYIPGLLNWVLEMDSEQATQIIKDPLNYAVGLLKSKLENLIDTNSIAAWLNEKIT 726

Query: 703 IGENLWE---------ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
             +             ES      Y+ Y +         IS    +  L        +  
Sbjct: 727 YIDGYETQIGCKSPLGESKEQIWLYANYCKYCSLSGINTISLTRFSYLLLDLC-NNQLGF 785

Query: 754 EKIEKEWKSKRIIKGLKLKPAFESVDD 780
              +   +    I+GLK++   +    
Sbjct: 786 TIKKGRDRKGAFIQGLKIRDHLDEDLP 812


>gi|284037975|ref|YP_003387905.1| P4 family phage/plasmid primase [Spirosoma linguale DSM 74]
 gi|283817268|gb|ADB39106.1| phage/plasmid primase, P4 family [Spirosoma linguale DSM 74]
          Length = 486

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 67/496 (13%), Positives = 148/496 (29%), Gaps = 57/496 (11%)

Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322
           +    K +              +    + +     +       +      K  + I    
Sbjct: 15  DYIEKKANEMHTTHEQVMTNLLAQIDKIDFQERVGLESDYEEPKLK----KQHYLICVVE 70

Query: 323 HFLYTADTKAWYKKDKNNV-YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
             L  A    W     +++ Y ++    K+                             +
Sbjct: 71  EILSVASKNQWGLCRSDSLFYAYNGAFWKVID-------------------------KDE 105

Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF--SITSDLLDSSSRFLGEQDGILDLE 439
              F      R    +  ++    A+SL         + S  +  +   +   +G  ++ 
Sbjct: 106 LRNFLKTAAERMGVGKFTARYVEFAKSLFDQFTETAYLPSPAISDNKININLANGTFEIS 165

Query: 440 --TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG- 496
               Q  K     ++T      +     +  F   ++               +G   +  
Sbjct: 166 PTCQQIRKADSADFLTYQLSFAYNREAQAPLFQAFLNRVQPDVSCQHLLAEYLGYVFISP 225

Query: 497 -GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
              K ++ + + G G +GKS    +I    G   V +     +         +       
Sbjct: 226 AKLKLEKTLLLYGSGANGKSVFFEIITALLGPDNVSHYSLQSLT-------NEPAYCRAN 278

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L    +   SE   N ++ A+  KQM  G+ + ARL YG  +  S          N+   
Sbjct: 279 LATKLLNYASEI--NGKLEASTFKQMVSGEPIEARLPYGQPFIMSK-YAKLIFNCNELPA 335

Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
                 A++RR++++PF+  I    +D   A K+          W L G+   + +    
Sbjct: 336 DVEHTPAYFRRFLILPFNVTISEEEQDKELAAKIIRSELSGVFNWVLDGLHRLLEQK-RF 394

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW---EESHSLAKSYSEYREQELNYDR 730
              E   +  E+ ++ +DT + ++D+     +       +  +L   Y +YR   +    
Sbjct: 395 TDCEAVKQQIEDYKRQSDTVRLFLDE-----QGYKPHTTDYSTLQDLYRDYRGFCIEDGY 449

Query: 731 KRISTRTVTLNLKQKG 746
           + +        ++  G
Sbjct: 450 RAVKKLNFRKRIEGYG 465


>gi|166032368|ref|ZP_02235197.1| hypothetical protein DORFOR_02071 [Dorea formicigenerans ATCC
           27755]
 gi|226324022|ref|ZP_03799540.1| hypothetical protein COPCOM_01800 [Coprococcus comes ATCC 27758]
 gi|166028091|gb|EDR46848.1| hypothetical protein DORFOR_02071 [Dorea formicigenerans ATCC
           27755]
 gi|225207571|gb|EEG89925.1| hypothetical protein COPCOM_01800 [Coprococcus comes ATCC 27758]
          Length = 600

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 62/420 (14%), Positives = 145/420 (34%), Gaps = 35/420 (8%)

Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGEQDG 434
            + +    ++       R  V+     K     L A       +  L+    R++  ++G
Sbjct: 182 EDHDGVRMKYRIQKLIYRDQVQS-GVIKRIYNLLIAQPKVHREAYELNKQPVRWINFKNG 240

Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPS------QEFLDLVSGYFESEEVMDYFTR 488
             D   G+ ++   +         P+   +        +     ++    ++E    F  
Sbjct: 241 YYDPVKGEMLEHNPDYLTINQIPFPYYPEDCEQVLQGGENIKKYLASSLPNKEEQQTFWE 300

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
             G  +    + Q+F+ ++G GG+GKS  ++LI++  G   + +    D+ +        
Sbjct: 301 YFGYCMTQDTQFQKFLTLKGNGGTGKSVAVSLIQHVVGITNMSSISLQDLNKRFYATG-- 358

Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
                  + G  +   ++       N   +K+  G D +      G       +      
Sbjct: 359 -------MYGKLLNACADIPCKAMENTDVLKKAVGEDTLIYEKK-GQDAIHFHSYAKLLF 410

Query: 609 VPNKHLF-VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKA 665
             N+    + +  DA++RR +++  ++ +    +D    +K     +  A    +  +K 
Sbjct: 411 STNEMPQNLEDKSDAFYRRLLILDMNRVVKSGEKDLHLKEK-VQAESDYAIHMAMIALKN 469

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
              +G      E   +   E ++ +D+  A+ID+     +    +   +   Y EY ++ 
Sbjct: 470 LYEQG-KFTESEHSKECVREVQRTSDSICAFIDESLVRAKGKRLKRSEVFHMYEEYCKEN 528

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA-FESVDDNSNI 784
               R+         N+  KGF+         K++  +   + + +K   F  VD    I
Sbjct: 529 G---RQGHGKSNFFRNMTDKGFLL--------KQYNGEFYYQDIAVKEEDFCPVDPEERI 577


>gi|168702227|ref|ZP_02734504.1| Phage/plasmid primase P4-like protein [Gemmata obscuriglobus UQM
           2246]
          Length = 913

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/359 (15%), Positives = 121/359 (33%), Gaps = 29/359 (8%)

Query: 424 SSSRFLGEQDGILDLET------GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
               ++   +G+LD+           V  T   +   +    F        F   +    
Sbjct: 538 EQREYIACANGLLDVAELLASGAPTLVPATPLYFTPAAIPVAFDASAKCPRFDSFLERVT 597

Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
               E         G  L    + Q+F  + G G +GKST + +++   G+    +    
Sbjct: 598 DGDRERQLILQEIAGYLLRFDTRFQQFFVLTGEGSNGKSTFLAVLRALIGDHNYASVPLE 657

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
           +              +L   +G  +  ++E  E D++  AK+K   G D M+        
Sbjct: 658 EF---------GERFALGVTLGKLVNAVAEVGELDKVAEAKLKSFVGADLMSFDRKNKAP 708

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA-----SFAQKLETKY 651
              +  +    +  N      +  +  WRRY ++PF   I + +           + +  
Sbjct: 709 -ISARPTARLLLSTNTLPRFADRSEGVWRRYQLVPFTTVITDGEKVHGMSDPGWWIASGE 767

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GENLWEE 710
                 W L G+     +G      +V   AK E R+  + ++ +++D   +   +    
Sbjct: 768 LPGVLNWALAGLHRLYQQG-GFSSSKVGETAKAEHREICNPHRQFLEDHLQLADADKTVR 826

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
           +  +  +Y E+        RK +S       ++ +    G+ + +       +++  G+
Sbjct: 827 TTEVYAAYVEWCRA-----RKFLSLNDANFGVELRKVFKGVTKVRKRVGRDREQVYAGV 880


>gi|240047623|ref|YP_002961011.1| hypothetical protein MCJ_005030 [Mycoplasma conjunctivae HRC/581]
 gi|239985195|emb|CAT05208.1| HYPOTHETICAL PROTEIN MCJ_005030 [Mycoplasma conjunctivae]
          Length = 745

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/758 (12%), Positives = 216/758 (28%), Gaps = 104/758 (13%)

Query: 21  IPLRLGDKRPQRLGKWEEQLLSSEKIDK-LPACGFGFVCGVGEQPLYAFDIDSKD-EKTA 78
           IPL     +  R+ KW     +  K+ +       G +           DID+KD  +T+
Sbjct: 21  IPLNAD--KSPRIKKWSGTGSTRYKLKEIFSEQNIGMIV---PPNYCVIDIDNKDNPETS 75

Query: 79  NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAY 138
               +    L       I +  +    F           T  +     DI     +  AY
Sbjct: 76  TKLINLITRLKLKT--SILETTRGHHFFFHCSIAKPYTDTLLALGIKADIKT--GFKNAY 131

Query: 139 NIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198
            +  +  K   W       K++  P         + +   E+  P    + S   +    
Sbjct: 132 TMIKQNGKWRKWIQLLEPQKLDYLPRFLTPIGGRIAEKIAELDTPTNLVEGSRRNNFFAR 191

Query: 199 NNN--NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ 256
                   Y+ +EI   ++     F +            +     G              
Sbjct: 192 VFPLYRLGYSKQEIIDIITYLNIFFVSKP-----ISGHEIKKIFDGFDNIF----INQNL 242

Query: 257 GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMF 316
              YD++               +    +  F +L     +              +   + 
Sbjct: 243 TPDYDKD---------------NQGDNQELFANLEATTRQEGLPSPFEFFQGSKFKHNLL 287

Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
           + Y    +      +  Y  +   +Y+      K+   ++  +  +   +  + E     
Sbjct: 288 ADYLIEKYHIKIFNELIYFYNGY-IYVCDEV--KLNGKMLEIVPDL--TMRQIQE----- 337

Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
                                         +++      +      +     +  ++ ++
Sbjct: 338 ----------------------------VTKNILNKPTITYAELEFN----IVALKNNLV 365

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALL 495
           ++ T + +    + +I       + +     +    +     ++ +++      +G  L 
Sbjct: 366 NINTREIMPFDPKYFIINQLPIDYDDKADDSQIQRFLKQICSNDIQLVQILMEFLGYCLT 425

Query: 496 GGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
           G  + Q+ + + G    +GKST ++L+   FG     N    ++ +              
Sbjct: 426 GDLRYQKALLLFGPSAANGKSTFLSLVIALFGKTNTSNIALENVGK---------RFQTA 476

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            L+   I I  + + +     A +K +  GD +TA     + +S            NK  
Sbjct: 477 NLLNKMINIGGDISVDHIKEPATLKNLITGDIITAEFKGRDVFS-FENKAKMIFATNKLP 535

Query: 615 FVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK-KWFLKGVKAYISKGL 671
                 + ++RR+I++PF         D +   KL T   L A     L+G     + G 
Sbjct: 536 SSGERSNGFFRRFIILPFLTQFKGDNVDINILDKLRTPANLSALFNLALQGYSRLKTNG- 594

Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDD---------CCDIGENLWEESHSLAKSYSEYR 722
           +    +      E   +  +    W+++            + +       S   +Y  Y+
Sbjct: 595 EFTHSQKASLLLELYAKKNNPVILWLEENAKQHGEKGRIYLKKGTIIRQSSPYDTYLNYQ 654

Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
                Y  K +S    +  +       GI+ +     W
Sbjct: 655 SFCEKYGYKPLSVINFSEEIITYYADEGIQSDGQFWRW 692


>gi|21226253|ref|NP_632175.1| hypothetical protein MM_0151 [Methanosarcina mazei Go1]
 gi|20904491|gb|AAM29847.1| conserved protein [Methanosarcina mazei Go1]
          Length = 628

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 128/345 (37%), Gaps = 15/345 (4%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYF-ESEEVMD 484
             +   +G+LD+ T +    + E  +       +     +  +F+++++  F  SEE + 
Sbjct: 227 NLIPVGNGVLDINTMELSDYSPETVLLTKFPRDYNPSAATPSKFMEMLNTTFDGSEEQIK 286

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                 G   L     +    + G G +GK+TL+N++    G +   +   S++      
Sbjct: 287 LVQEMFGYCFLRSYFLEVIFFLIGNGRNGKTTLLNILGALLGGE--ESGHISNLSFKDLS 344

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
           E    N  L  L G    I  +T ++       IK++TG D + AR  Y +++    +  
Sbjct: 345 EPKNEN-MLCDLYGRYANICGDTGKHKIKETDYIKKVTGNDFVRARKLYKDSF-NFKSFA 402

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKL--ETKYTLEAKKWF 659
              +  N+   V +  D + RR  +I F+    +    + +   ++  + +       W 
Sbjct: 403 KVILAFNQLPEVDDFSDGFKRRIRIIEFNHKFEDGAGANKNIEAEITGDEEEMEGIFLWA 462

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
           ++G+K  +            +    E  + ++    ++ +C       +     L + Y 
Sbjct: 463 MEGLKRILENN-SFSDKRSIVSRGMEYARKSNPMHYFVRECIVESPGHFVNKADLIEKYV 521

Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
           EY E        +++ +     L  +     I   +   + K+ R
Sbjct: 522 EYAEYN---KMPQLTPQAFKKGLIAECTDISINTFEKRDQTKTGR 563


>gi|170756489|ref|YP_001781751.1| phage primase [Clostridium botulinum B1 str. Okra]
 gi|169121701|gb|ACA45537.1| phage primase, P4 family [Clostridium botulinum B1 str. Okra]
          Length = 621

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/492 (13%), Positives = 162/492 (32%), Gaps = 37/492 (7%)

Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
           +  S +  +     K + K  +        NK +         +            K + 
Sbjct: 159 RNSSLYGYILTLQQKGLTKEDIRETIK-IINKDILKDPLDEKEIEVILRDE--AFLKESF 215

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
           YI        +      L     D   + +  ++ +    +       +  +  ++  + 
Sbjct: 216 YI-------KSKLQYEKLALYLRDNEKIIKINDELHIYKNNYYSSDTKEIEKTMLKYINN 268

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
           + ++ ++     +  +  +   ++ +++   +GI DLE+ + ++      I       + 
Sbjct: 269 STNSTRTEVLRYLDLLCKNSKMANPKYITLDNGIFDLESKKLLEFNSPYIIKNRIPWSYN 328

Query: 462 EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               SQ     +     + +++       +G  L   N+  +   + G G +GKSTL+ +
Sbjct: 329 PNAYSQTMDKTLDKICCKDKQLRLLIEEMIGYTLFRRNELGKAFILTGQGANGKSTLLEV 388

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           +    G + + +    ++                +L G    I  + +     + +  K+
Sbjct: 389 LNELLGEENIASVSLEEL---------NHRFKTFQLEGKLANIGDDISNKYIEDNSTFKK 439

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
           +  G+ +       + + +           N+   + +      RR I IPF+   + +D
Sbjct: 440 LVTGEKVNVERKGRDPF-DFKNYSKLIFSANELPRINDLSGGLKRRLIFIPFNATFSKKD 498

Query: 641 ASFA----QKLETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
             +      KL +   +E   K  L+G+   +         EVC +  EE     +    
Sbjct: 499 KDYDPFILDKLTSHEAMEYLLKLALQGLNRVLIN-HSFTHAEVCNQVWEEYEAINNPVVG 557

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           +++D     +   E    +   YS +  +      K +S       +K++G+        
Sbjct: 558 FLED----NDIENEPVKEIYLRYSAWCSENG---LKSVSKPVFGREVKKQGYNSDS---V 607

Query: 756 IEKEWKSKRIIK 767
           I    K KRI K
Sbjct: 608 IRVNGKQKRIYK 619


>gi|300215227|gb|ADJ79643.1| DNA primase [Lactobacillus salivarius CECT 5713]
          Length = 464

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 140/409 (34%), Gaps = 20/409 (4%)

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
           ++ +    +     +  +   N             + +    +    I   +  + +   
Sbjct: 70  YNQNNGLWEIMTKEEIEKIVTNKIDGINAWNAKDVSDTRKYIMNKAIIKQASETIDNVDP 129

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-EGEPSQEFLDLVSGYFESEEVMDY 485
             +  ++G+ +  T +      E YI             P+    + +S          Y
Sbjct: 130 FKVHFKNGVYNFITDKLEPNKPENYIFHGRNYNLDTSNTPTPLTDNWLSESVGDA--KKY 187

Query: 486 FTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
               +G        K Q F  +   GG+GKST  N +  A G   + N    D+  N+  
Sbjct: 188 IMEFIGYIFYRSYEKIQNFTILLAGGGNGKSTFFNWLSDAVGIDNISNVSLQDLTDNQR- 246

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                  +  RL    +   ++ ++    + A +K +TG D +      G          
Sbjct: 247 -----RFTTSRLYQKNMNYYADISKGLINDPALLKSITGDDALDVENK-GKDQRTIKPFA 300

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
             F   N+    ++    + RR +++PF+  I + +  F      K         LK  K
Sbjct: 301 KLFFGANELPPFKDTSKGFGRRPMIVPFEA-IEDFNERFKMVEIKKEIPAFIYKCLKAFK 359

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
             + +G   + PE+    + E     D    +IDD C++ +N   +   L  SY +Y  +
Sbjct: 360 KALERGYLSETPEMIK-LRNEWLGSNDIVGLFIDDYCELNKNYNIKKVYLYDSYKQYCLE 418

Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
                 + +S +     LK+        R    K+ K  RI +G+KLKP
Sbjct: 419 NG---YRAMSNQKFKQELKRFNVFDRYAR----KDGKMMRIFEGIKLKP 460


>gi|126661282|ref|ZP_01732353.1| hypothetical protein CY0110_01270 [Cyanothece sp. CCY0110]
 gi|126617438|gb|EAZ88236.1| hypothetical protein CY0110_01270 [Cyanothece sp. CCY0110]
          Length = 1056

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 67/510 (13%), Positives = 148/510 (29%), Gaps = 44/510 (8%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW----SLTLDKITASIMNFLVS 361
           ++S+      F    K   ++   T  W+        IW     + L++     +  L  
Sbjct: 319 KWSEEGLTLYFEKLYKDRLIFEDKTGDWHLYGAEKEGIWGQISKIQLERRIILELRELKQ 378

Query: 362 MKEDVF-----DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
             E +       +    + N    +          ++    E +         +   I  
Sbjct: 379 QFEQINGQIALAIKSVKDSNRSRDEKKEIIDQLKAQKPTYREITINFVEKLGKKLSRILL 438

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
           +     ++    +  ++G+LD+ET      +   Y T S    +      +     +   
Sbjct: 439 VKEMACNAHKGLIPFKNGVLDIETRDLWPHSPTNYFTWSLPYDYNPLATGEPIKQWLLEM 498

Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
               E +++     +   + G    Q+F+ + G GG+GKSTL+ L     G         
Sbjct: 499 MQGDESLVELIRAYLHGVVTGRADWQKFLELIGPGGTGKSTLIRLAIALVGFSNCHVTTL 558

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +  ++             +   R+V++++       +   +K +TG D +        
Sbjct: 559 KRLETSK--------FETANIKDKRLVLVTDAERYTG-DVTTLKALTGEDSLPYEKKMQQ 609

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE------- 648
                       I  N+H+   +      RR I +   + I+  +     K +       
Sbjct: 610 ATGGFKPDCLVIIAGNEHIKTADYTSGLQRRRITVGMKRKISEENQKNLIKHDNQGNISG 669

Query: 649 --TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE--EERQGTDTYQAWIDDCCDIG 704
               Y      W L+      S+ +            E  E     +   AW+++     
Sbjct: 670 EFVPYIPGFLNWVLEMESESASECIKNAHKRCVKLTLERIESMVENNPIAAWLNENIIYD 729

Query: 705 ENLWE---------ESHSLAKS-----YSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
            + +          E+  +        Y  Y           IS    +  L        
Sbjct: 730 PDSYTHVGKAIASKENDEVYVGASKWLYPNYCAFCEGIKVNPISLNRFSTLLLDLCNHQL 789

Query: 751 IKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
              +  +   ++   I+GLK++   +    
Sbjct: 790 NLGDVAKDRNRNGVFIQGLKIRDHLDDEAP 819


>gi|229119301|ref|ZP_04248604.1| Phage / plasmid primase, P4 [Bacillus cereus Rock1-3]
 gi|228664167|gb|EEL19705.1| Phage / plasmid primase, P4 [Bacillus cereus Rock1-3]
          Length = 622

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 52/420 (12%), Positives = 135/420 (32%), Gaps = 36/420 (8%)

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
           I    +    +V  + +E   ++K               + ++            +  + 
Sbjct: 230 INEHHICKVTNVLHIYKEGVYSDKQEDIEEAMIRHIPALKRMQRQETIAYLQLKAKHKNF 289

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
            S           ++  ++G+ +LET Q    T E+         ++ G   +      +
Sbjct: 290 ASTK---------YVVVKNGVFNLETWQLEDFTPEIITRNKIPVAYIPGAYYEITDKTFN 340

Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
                 ++V       +G  L   N+      + G G +GKS+ + +I+   G+    + 
Sbjct: 341 KIAVNDKKVRAILEEILGYILFRRNEFAATFILTGDGSNGKSSYLKIIRKLIGSDNASSL 400

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
           + +++ Q               L G    I  +  +     ++  K+++ G+ +      
Sbjct: 401 DLNELDQ---------RFKTAELFGKLANIGDDIGKGYIKESSIFKKLSTGETLNVERKG 451

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA----QKLET 649
            + + +           N+   + +  D   RR  ++PF       D  +      KL +
Sbjct: 452 KDPF-DFTNYAKLIFSANEMPRINDFSDGLGRRLQIVPFKAKFTPNDDDYDPFITDKLLS 510

Query: 650 KYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIGENL 707
             +++      LK +K  + +       +       + ++  +   +++ ++  ++    
Sbjct: 511 DESMQYVLNLALKSLKRLLVEK-KFTKSKAVEDELIKYQEENNPIISFVNNEDVELE--- 566

Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
                 +   Y  Y  +      + +S    +  + Q     G K      + K+KRI  
Sbjct: 567 RAVVGDVYLQYKVYCAENG---FQSVSNINFSKQVTQL---FGYKSHVQRVDGKNKRIFV 620


>gi|168178720|ref|ZP_02613384.1| phage/plasmid primase, P4 family [Clostridium botulinum NCTC 2916]
 gi|182670306|gb|EDT82280.1| phage/plasmid primase, P4 family [Clostridium botulinum NCTC 2916]
          Length = 621

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 66/492 (13%), Positives = 162/492 (32%), Gaps = 37/492 (7%)

Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
           +  S +  +     K + K  +        NK +         +            K + 
Sbjct: 159 RNSSLYGYILTLQQKGLTKEDIRETIK-IINKDILKDPLDEKEIEVILRDE--AFLKESF 215

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
           YI        +      L     D   + +  ++ +    +       +  +  ++  + 
Sbjct: 216 YI-------KSKLQYEKLALYLRDNEKIIKINDELHIYKNNYYSSDTKEIEKTMLKYINN 268

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
           + ++ ++     +  +  +   ++ +++   +GI DLE+ + ++      I       + 
Sbjct: 269 STNSTRTEVLRYLDLLCKNSKMANPKYITLDNGIFDLESKKLLEFNSPYIIKNRIPWSYN 328

Query: 462 EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               SQ     +     + +++       +G  L   N+  +   + G G +GKSTL+ +
Sbjct: 329 PNAYSQTMDKTLDKICCKDKQLRLLIEEMIGYTLFRRNELGKAFILTGQGANGKSTLLEV 388

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           +    G + + +    ++                +L G    I  + +     + +  K+
Sbjct: 389 LNELLGEENIASVSLEEL---------NHRFKTFQLEGKLANIGDDISNKYIEDNSTFKK 439

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
           +  G+ +       + + +           N+   + +      RR I IPF+   + +D
Sbjct: 440 LVTGEKVNVERKGRDPF-DFKNYSKLIFSANELPRINDLSGGLKRRLIFIPFNATFSKKD 498

Query: 641 ASFA----QKLETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
             +      KL +   +E   K  L+G+   +         EVC +  EE     +    
Sbjct: 499 KDYDPFILDKLTSHEAMEYLLKLALEGLNRVLIN-HSFTHAEVCNRVWEEYEAINNPIVG 557

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           +++D     +   E    +   YS +  +      K +S       +K++G+        
Sbjct: 558 FLED----NDIENEPVKEVYLRYSAWCSENG---LKSVSKPVFGREVKKQGYNSD---TV 607

Query: 756 IEKEWKSKRIIK 767
           I    K KR+ K
Sbjct: 608 IRVNGKQKRVYK 619


>gi|221142329|ref|ZP_03566822.1| putative DNA primase-phage associated protein [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|302750250|gb|ADL64427.1| putative DNA primase-phage associated [Staphylococcus aureus subsp.
           aureus str. JKD6008]
          Length = 456

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 130/349 (37%), Gaps = 21/349 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485
           R++G ++GI D    +    + + YIT      F +G  S      +     E EEV   
Sbjct: 101 RYIGLKNGIYDTVEERLNPFSPQYYITNIIDVDFDKGAQSDLIERFIKDISNEDEEVEQL 160

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
               +G  L   N  Q        GG+GK+TL+ L+ + +  +       +D+     P 
Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                     L G  + I  + + N   +    K +  G+ +T      + + E      
Sbjct: 220 --------ANLQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAF-EFKPYVK 270

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA----NRDASFAQKLETKY-TLEAKKWFL 660
                N+     +  + ++RR ++IP  +        +D     KL T +         L
Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPHNMSALLNLAL 330

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSY 718
           KG+K  +    ++  P++  K KEE +   +    +I+D  D         E  +  K+Y
Sbjct: 331 KGLKRTLENN-EIIEPKIARKTKEEYQFENNPVLQFIEDATDKDYRQLPVVEGRNTDKAY 389

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
             Y+   +N     ++    +  L + G+       ++E+  KSKR  K
Sbjct: 390 EIYQIWCVNNGYHHLNKFNFSKELAKIGYKTVSYYSRVEE--KSKRFYK 436


>gi|322806854|emb|CBZ04424.1| hypothetical protein H04402_02617 [Clostridium botulinum H04402
           065]
          Length = 391

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 125/350 (35%), Gaps = 27/350 (7%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
           ++ +++  ++GI DLE  + ++      I       +     S+     ++    + +++
Sbjct: 61  TNPKYITLENGIFDLENKKLLEFNSSHIIKNKISWSYNPNAYSETMDKTLNKICCKDKQL 120

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                  +G  L   N+  +   + G G +GKSTL+ ++    G + + +    ++    
Sbjct: 121 RLLIEEMIGYTLFRRNELGKAFILTGQGANGKSTLLEVLNELLGEENIASVSLEEL---- 176

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                       +L G    I  + +     + +  K++  G+ +       + + +   
Sbjct: 177 -----NHRFKTFQLEGKLANIGDDISNKYIEDNSTFKKLVTGEKVNVERKGRDPF-DFKN 230

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA----QKLETKYTLE-AKK 657
                   N+   + +      RR I IPF+   + +D  +      KL +   +E   K
Sbjct: 231 YSKLIFSANELPRINDLSGGLKRRLIFIPFNATFSKKDKDYDPFILDKLTSHEAMEYLLK 290

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
             L+G+   +         EVC +  EE     +    +++D     +   E    +   
Sbjct: 291 LALEGLNRVLIN-HSFTHAEVCNRVWEEYEAINNPIVGFLED----NDIENEPVKEVYLR 345

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
           YS +  +      K +S       +K++G+        I    K KR+ K
Sbjct: 346 YSAWCSENG---LKSVSKPVFGREVKKQGYNSD---TVIRVNGKQKRVYK 389


>gi|264680173|ref|YP_003280082.1| Phage/plasmid primase P4, C-terminal protein [Comamonas
           testosteroni CNB-2]
 gi|262210688|gb|ACY34786.1| Phage/plasmid primase P4, C-terminal protein [Comamonas
           testosteroni CNB-2]
          Length = 372

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 120/344 (34%), Gaps = 27/344 (7%)

Query: 425 SSRFLGEQDGILDL--ETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEE 481
            +  L  ++G L L           K   +    G  +    P    F   +       +
Sbjct: 37  DAAVLPLKNGYLHLAPTGNVLQPHDKAAGLQYVIGCDYDSTAPEPARFNHFLQTILPDVD 96

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           V +     VG  LL  ++ QR     G G +GK  L N+++        +  +A D    
Sbjct: 97  VRNRVQEYVGYTLLPDSRFQRLQLWLGNGANGKGVLANIVQALHAKCAAVQLDALD---- 152

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
                      L  L+G+ ++   ET +   +N   +K    G+ +     Y       P
Sbjct: 153 --------GFKLAGLIGASLIYADETPQ-RGMNEQILKSAVAGELLQIDRKYREP-LTLP 202

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659
                 ++ N+   + +  +  WRR+ ++PF   I   +RD   A  +          W 
Sbjct: 203 LKGKWLVLANQFPSITDQSNGLWRRFDIVPFPVTIPERDRDPMLASTIIKTELSGVLNWS 262

Query: 660 LKGVKAYISKG-LDVDIPEVCLKAKEEERQGTDTYQAWIDDC-CDIGENLWEESHSLAKS 717
           L G++  + +G  D  +P     A+ + ++ T++ Q+W DD   ++   +      +  +
Sbjct: 263 LIGLQRLLERGRFDECLPSPMRSARRDVQRETNSVQSWADDRGIELSIAVETSKTDVYAN 322

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQ---KGFIGGIKREKIEK 758
           Y  +  +        +++      +      G + G K     +
Sbjct: 323 YVSWCRENGMS---PVASPKFWKRMPDTVGHGLVDGRKTITTGR 363


>gi|73663249|ref|YP_302030.1| primase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495764|dbj|BAE19085.1| putative primase [Staphylococcus saprophyticus subsp. saprophyticus
           ATCC 15305]
          Length = 780

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 97/746 (13%), Positives = 209/746 (28%), Gaps = 83/746 (11%)

Query: 27  DKRPQRLGKWEEQLLSSEKIDKLPA-----------CGFGFVCGVGEQPLYAFDIDSK-D 74
            K P ++   +    + +                   G GF+     + +   DID+  D
Sbjct: 42  KKVPYQVNGVKASSTNKDTWSNFQDVYSLYDSSNGYDGIGFILSKESKHIC-LDIDNAVD 100

Query: 75  EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQY 134
            +T     +    +       +      L  F        +K         +++    ++
Sbjct: 101 AETHQLQTELGLEMTELTYCELSPSGTGLHCFFKGTLPENRKSKRTDL--DIELYHTSRF 158

Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS 194
                                  ++ D   + +  VE  FK          K    I  +
Sbjct: 159 MTFTG------------YTIGGSEISDDQGVIDNLVERFFKA------EPKKQNIRIAKT 200

Query: 195 KTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV-----HHETRGSSKGKEI 249
            +    ++         +         Y G  D     V ++      +  R  S+ + I
Sbjct: 201 GSSIFTDDEIVRMMTKKSKYKKLLAGEYEGIFDSPSEAVQSLLRVLAFYTGRDKSQMESI 260

Query: 250 ARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
              ++     +DE+  N  W   + +      +         Y          L    S 
Sbjct: 261 FLTYNNLTDKWDEKRGNSTWGNNELDTAIANQET-------IYEPNSRGTGQSLRYTIS- 312

Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
              K   +  K          K   +         S          +     +K  +FD+
Sbjct: 313 LIRKEELAFMKAEF----EKAKENGEASGRPPQTISSNR-----CAVLLNDVIKFVIFDM 363

Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS--SSR 427
            E  +     S    +  NT   ++ +       +  ++LE     +   D++D      
Sbjct: 364 EENTKLAMYQSDKGIYTQNTAIIKRIISWLEPRHNEKKALEVIYHLTNMVDVVDKTNEPH 423

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGY-FESEE 481
            +   +G+ + ++ +    T +   T    T +++   +       F + +        E
Sbjct: 424 LIPVNNGVFNRKSMKLESFTPKYIFTTKISTNYIDNPKTPVINGWSFDNWLEEVACGDRE 483

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           V     + +  +L G    ++ I + G G + K +   L+    G   V + + ++  Q 
Sbjct: 484 VFTLLWQVINDSLNGNYTRKKAIFLVGDGNNAKGSYQTLLTNLIGFDNVASLKVNEFDQE 543

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSES 600
                      L  L G  +VI  +      I +++    +  GD +   +     Y   
Sbjct: 544 ---------FKLGVLEGKTLVIGDDVPVGVNIEDSSNFNSVITGDPVLVNIKNKQPYRTV 594

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKW 658
               T     N     +N      RR +++PF+     A  + +  +K  T       ++
Sbjct: 595 -FRTTVIQSTNGMPRFKNKTGGTNRRLLIVPFNADFNGAKENPNIKEKYLTDKK--VLEY 651

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
            L              +P    K  EE  Q  D    +     D  +        +   Y
Sbjct: 652 VLHKAINLNFN--KFIVPRASAKLLEEYIQDNDPVYDFKVTEFDKWKIDKVPKAVVYFRY 709

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQ 744
             + E       + +S R    + ++
Sbjct: 710 KVFCE---RGGYRALSERKFCKSFER 732


>gi|294338996|emb|CAZ87341.1| putative Phage/plasmid primase P4, C-terminal [Thiomonas sp. 3As]
 gi|294341823|emb|CAZ90252.1| putative Phage/plasmid primase P4, C-terminal [Thiomonas sp. 3As]
          Length = 426

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 70/434 (16%), Positives = 134/434 (30%), Gaps = 52/434 (11%)

Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396
           D N +Y W+ T             +    V    +    + +N++               
Sbjct: 24  DSNLLYQWTGTHWSPIDEEAAERDAYAWLVAQ--DPAWASAENARKA------------- 68

Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITK 454
                       + A S+FS     L + +  +  Q G + L+  +         L +T 
Sbjct: 69  ------------VRAASLFSPRLPKL-TDAVVVPTQSGYVHLDGAELVLKPADPSLGLTH 115

Query: 455 STGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
               P+         F   V        V       +G  LL   + QR     G G +G
Sbjct: 116 CLDCPYAPEGVMPAHFAAFVQRVLPDPSVRARVQEYIGYTLLADARYQRAQFWLGEGANG 175

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           K  L N+++   G+   +  +              A   L  L+G+ +V + E      I
Sbjct: 176 KGVLANVVQALHGHIAAMALDQL------------AGFHLSVLVGASLVYVDEVPR-KPI 222

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
           +  ++K M  G+ +     Y              ++ N    + +    +WRR+ V+PF 
Sbjct: 223 DEQRLKSMIAGERIPVDRKYREP-LSIHVRGKWLVLGNHLPAISDHSSGFWRRWDVVPFS 281

Query: 634 KPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYI-SKGLDVDIPEVCLKAKEEERQGT 690
             I    RD   AQ +  +      +W L G+       G D  +P       +E +  T
Sbjct: 282 VTIPERERDPLLAQTIVREELSGVLRWALDGLVRLQTRGGFDPVMPAAMQAMLQEAKADT 341

Query: 691 DTYQAWIDDC-CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
           ++  AW++D    +          + + Y  +           +S       +++     
Sbjct: 342 NSVVAWVEDLGVKLQLACDVPKERVFEHYRNWCAVN---AMHEVSVVQFWKRVREHFREL 398

Query: 750 GIKREKIEKEWKSK 763
              R +     +  
Sbjct: 399 TEARIRTGPGQRRV 412


>gi|330684410|gb|EGG96135.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Staphylococcus epidermidis VCU121]
          Length = 455

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 65/347 (18%), Positives = 127/347 (36%), Gaps = 19/347 (5%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485
           R++G ++GI D+   +    + + YIT      F E   S      +     + EEV   
Sbjct: 101 RYIGLKNGIYDIVEEKLKAFSPQYYITNIIDVDFNEQAQSDLIERFIKDISNDDEEVEQL 160

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
               +G  L   N  Q        GG+GK+TL+ L+ + +  +       +D+     P 
Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                     L G  + I  + + N   +    K +  G+ +T      + + E      
Sbjct: 220 --------ANLQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAF-EFKPYVK 270

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA----NRDASFAQKLETKY-TLEAKKWFL 660
                N+     +  + ++RR ++IP  +        +D     KL T +         L
Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPHNMSALLNLAL 330

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSY 718
           KG+K  +    ++  P++  K KEE +   +    +I+D  D         E  +  K+Y
Sbjct: 331 KGLKRTLENN-EIIEPKITRKTKEEYQFDNNPVLQFIEDATDKDYRQLPVVEGRNTDKAY 389

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
             Y+    N     ++    +  L + G+       K++++ K   +
Sbjct: 390 EIYQIWCANNGYHHMNKMNFSKELSKLGYKSVAYWSKVQEKTKRFYV 436


>gi|242243105|ref|ZP_04797550.1| P4 family phage / plasmid primase [Staphylococcus epidermidis
           W23144]
 gi|242233453|gb|EES35765.1| P4 family phage / plasmid primase [Staphylococcus epidermidis
           W23144]
          Length = 624

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 73/552 (13%), Positives = 176/552 (31%), Gaps = 55/552 (9%)

Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
           NG+  +WI          R   +  +   +W +     D          F     GD  +
Sbjct: 118 NGTFRKWIK---------RVEDEQLDELPKWLEASFKNDPG--------FSELGEGD-GR 159

Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342
            ++ F  +         K  + +         ++              +A+ K+      
Sbjct: 160 NQTLFNYILKLQQIAFSKDEIRNTIRIINKHILYEPISDKELDVILRDEAFLKESFFING 219

Query: 343 IW-SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
            +      K   S  + +     D+  +  +   ++K     R         + ++    
Sbjct: 220 KFQHDLFAKFLISEYHIIRIA--DILHIYIDGYYSDKQDDIERLMIKHIPGLKKIQRQET 277

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
                   +   +  +          +L   +GI DL T      T E+ +      P++
Sbjct: 278 LSYLQLQTKQKELSPV---------NYLTLANGIYDLNTNSMQSFTPEIIVKNKIPVPYI 328

Query: 462 EGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
           E    +      +       E+ + F   +G  L   N+  +F  + G G +GKS+ + +
Sbjct: 329 ENSYHEITDKTFNKLAVNDHELRNLFEEILGYTLFRRNEYGKFFILTGGGSNGKSSFLKI 388

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           ++   G+    +    D+                 L G  + +  +  +    ++A++K 
Sbjct: 389 LRALVGDTNTSSVALKDVNG---------RFKTAELFGKLVNLGDDIGKGFIKDSAELKN 439

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
           +  G+ +       + + +           N+   + +  D   RR +++PF     N D
Sbjct: 440 LATGETLVVERKGKDPF-DLRNYAKLIFSANEVPRIDDKTDGLNRRLMIVPFKAKFTNTD 498

Query: 641 ASFA----QKLETKYTLEA-KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
             +      KL +  +L+      ++G+   +        P+      E  ++  +   A
Sbjct: 499 IDYDPFIIDKLLSPDSLQYCLVMAIRGLNRLLKNN-RFTKPKTVTAEIEAYKERNNPVLA 557

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           ++++  +  +   E +  +   YSEY  +   Y  K +S    T  + +      ++ ++
Sbjct: 558 FLNN--EEPKLENESTKDIYTQYSEYCVE---YGYKSVSRAVFTKEVCRL---KKVESKQ 609

Query: 756 IEKEWKSKRIIK 767
           I      + I  
Sbjct: 610 IRVNGIREHIYV 621


>gi|90962627|ref|YP_536543.1| DNA primase [Lactobacillus phage Sal3]
 gi|90821821|gb|ABE00460.1| DNA primase [Lactobacillus phage Sal3]
          Length = 464

 Score =  203 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 141/409 (34%), Gaps = 20/409 (4%)

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
           ++ +    +     +  +   N             + +    +    I   +  + +   
Sbjct: 70  YNQNNGLWEIMTKEEIEKIVTNKIDGINAWNAKDVSDTRKYIMNKAIIKQASETIDNVDP 129

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEEVMDY 485
             +  ++G+ +  T +      E YI             P+    + +S   E      Y
Sbjct: 130 FKVHFKNGVYNFITDKLEPNKPENYIFHGRNYNLDTNNTPTPLTDNWLSESVEDA--KQY 187

Query: 486 FTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
               +G        K Q F  +   GG+GKST  N +  A G   + N    D+  N+  
Sbjct: 188 IMEFIGYIFYRSYEKIQNFTILLAGGGNGKSTFFNWLSDAVGIDNISNVSLQDLTDNQR- 246

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                  +  RL    +   ++ ++    + A +K +TG D +      G          
Sbjct: 247 -----RFTTSRLYQKNMNYYADISKGLINDPALLKSITGDDALDVENK-GKDQRTIKPFA 300

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
             F   N+    ++    + RR +++PF+  I + +  F      K         LK  K
Sbjct: 301 KLFFGANELPPFKDTSKGFGRRPMIVPFEA-IEDFNERFKMVEIKKEIPAFIYKCLKAFK 359

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
             + +G   + PE+    + E     D    +IDD C++ +N   +   L  SY +Y  +
Sbjct: 360 KALERGYLSETPEMIK-LRNEWLGSNDIVGLFIDDYCELNKNYNIKKVYLYDSYKQYCLE 418

Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
                 + +S +     LK+        R    K+ K  RI +G+KLKP
Sbjct: 419 NG---YRAMSNQKFKQELKRFNVFDRYAR----KDGKMMRIFEGIKLKP 460


>gi|70727094|ref|YP_254008.1| putative DNA primase-phage associated [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447818|dbj|BAE05402.1| putative DNA primase-phage associated [Staphylococcus haemolyticus
           JCSC1435]
          Length = 455

 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 135/369 (36%), Gaps = 29/369 (7%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485
           R++G ++GI D    +    + + YIT      F +   S      +     E EEV   
Sbjct: 101 RYIGLKNGIYDTLEEKLKSFSPQYYITNIIDVDFDKDAQSDLIEKFIKDISNEDEEVEQL 160

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
               +G  L   N  Q        GG+GK+TL+ L+ + +  +       +D+     P 
Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                     L G  + I  + + N   +    K +  G+ +T      + + E      
Sbjct: 220 --------ANLQGKLVNIADDIDPNRIRDTGNFKIIVTGNYITLEFKGQDAF-EFKPYVK 270

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA----NRDASFAQKLETKY-TLEAKKWFL 660
                N+     +  + ++RR ++IP  +        +D     KL T +         L
Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKDGQKKDPMLLNKLITPHNMSALLNLAL 330

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW----EESHSLAK 716
           KG+K  +    ++  P++  K KEE +   +    +I+D     ++       E  +  K
Sbjct: 331 KGLKRTLENN-EIIEPQIARKTKEEYQHDNNPVLQFIEDA--EDKDYRQLPVVEGRNTDK 387

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
           +Y  Y+    N     ++    +  L + G+       K ++  K+KR      +K    
Sbjct: 388 AYEIYQIWCANNGYHNMNKMNFSKELSKLGYKSVAYWSKAQE--KTKRFY----VKDTTN 441

Query: 777 SVDDNSNII 785
            + D++ II
Sbjct: 442 VIYDSNGII 450


>gi|251810225|ref|ZP_04824698.1| DNA primase-phage associated protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251806277|gb|EES58934.1| DNA primase-phage associated protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 455

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 66/347 (19%), Positives = 126/347 (36%), Gaps = 19/347 (5%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485
           R++G ++GI D    +    + + YIT      F E   S      +     + EEV   
Sbjct: 101 RYIGLKNGIYDTIEEKLNSFSPQYYITNIIDVDFNEQAQSDLIERFIKDISNDDEEVEQL 160

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
               +G  L   N  Q        GG+GK+TL+ L+ + +  +       +D+     P 
Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                     L G  + I  + + N   +    K +  G+ +T      + + E      
Sbjct: 220 --------ANLQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAF-EFKPYVK 270

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA----NRDASFAQKLETKY-TLEAKKWFL 660
                N+     +  + ++RR ++IP  +        +D     KL T Y         L
Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPYNMSALLNLAL 330

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSY 718
           KG+K  +    ++  P++  K KEE +   +    +I+D  D         E  +  K+Y
Sbjct: 331 KGLKRTLENN-EIIEPKIARKTKEEYQFDNNPVLQFIEDATDKDYRQLPVVEGRNTDKAY 389

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
             Y+    N     ++    +  L + G+       K++++ K   +
Sbjct: 390 EIYQIWCANNGYHHMNKMNFSKELSKLGYKSVAYWSKVQEKTKRFYV 436


>gi|227544673|ref|ZP_03974722.1| possible ATPase [Lactobacillus reuteri CF48-3A]
 gi|227185349|gb|EEI65420.1| possible ATPase [Lactobacillus reuteri CF48-3A]
          Length = 207

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 14/215 (6%)

Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
           +E  E   +N + +KQ+   D + A   Y   +S    S T  +  N    V   D+  W
Sbjct: 2   AELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIW 60

Query: 625 RRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
           RR IVIPF   IA R+   ++AQ+L  K      +W ++G +  I +   +  P    KA
Sbjct: 61  RRLIVIPFKAKIAKRNDIKNYAQRLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKA 120

Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
                   D    ++++ C++  +  ++S  L + Y EY +    Y R   ST      L
Sbjct: 121 VNAYHADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTAL 177

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
           K  GF    K+        + R IKGL+LK   + 
Sbjct: 178 KNAGFQRQHKQ--------NGRFIKGLRLKVEADE 204


>gi|255263132|ref|ZP_05342474.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
 gi|255105467|gb|EET48141.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
          Length = 295

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 111/291 (38%), Gaps = 24/291 (8%)

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
            +G  L+   + + F+ + G G +GKS  + +++   G + V   + ++           
Sbjct: 26  LMGYTLMSHARHELFVMLIGPGANGKSVFLAILEGLVGEKNVAGVQPANFSDK------- 78

Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
                  L      I++E  + + I  A++K +T G+  T    + + +       T + 
Sbjct: 79  --FQRAHLHKKLANIVTELKQGEMIADAELKGITSGEPSTVEHKHRDPFV-LRPFSTCWF 135

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYI 667
             N     R+  DA +RR +++ F++     +     +              L    + +
Sbjct: 136 GTNYMPRTRDFSDALFRRAVILQFNRTFTKEEQDPLLKDKLLTELPGILNLALDAYDSAL 195

Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELN 727
                   P     AK+E R   D    ++DD C    +   ++  + ++Y  + +   N
Sbjct: 196 VS--AFTQPGSTETAKQEWRLEADQVAQFVDDVCKRDPDACSKASKVFEAYLNWAQ--GN 251

Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
             ++ +S R +   L + GF          +  K+ R + GL++ PA  SV
Sbjct: 252 GIKQTMSQRGLRDRLTRLGFG--------HRRDKTARYVTGLRV-PARVSV 293


>gi|183600772|ref|ZP_02962265.1| hypothetical protein PROSTU_04371 [Providencia stuartii ATCC 25827]
 gi|188019677|gb|EDU57717.1| hypothetical protein PROSTU_04371 [Providencia stuartii ATCC 25827]
          Length = 209

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 7/212 (3%)

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            G +GKST + +I+   G+          +M      +G  N SL +L+G R+V+ +E  
Sbjct: 2   AGSNGKSTFIQIIQSLMGSYATQINSDVLMMNK---NSGGPNASLAKLLGKRLVVANELP 58

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           EN  ++   IK MTGGD + AR  YG    E  + F+  I+ N    + +     WRR  
Sbjct: 59  ENGRLDDTLIKSMTGGDIIVARQVYGKHELEFYSQFSLVIIGNHKPAIYDMSHGMWRRMC 118

Query: 629 VIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
           +IPF         D     KL          W L GV+A+ ++GL   +P   + A +E 
Sbjct: 119 LIPFAANFTAAQIDPELPVKLSR-EMQGILNWALAGVQAWHTEGLKRSLPAAVIAANDEY 177

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
           RQ +D    ++ + C +  + +  +  L  ++
Sbjct: 178 RQESDLIGEFL-EGCRLEPDAYTAASDLYSAF 208


>gi|75760988|ref|ZP_00740993.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491531|gb|EAO54742.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 545

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/418 (12%), Positives = 138/418 (33%), Gaps = 34/418 (8%)

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
           I    +    ++  + ++   ++K               + ++            +  + 
Sbjct: 152 INEHHICKITNILHIYKDGVYSDKQEDIEEAMIKHIPALKRMQRQETLAYLQLKAKHKNF 211

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
            S           ++  ++G+ +LET Q    T E+         ++     +     ++
Sbjct: 212 ASTK---------YVVVKNGVFNLETWQLEDFTPEIITRNKIPVAYIPDAYYKVTDKTLN 262

Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
                 + +       +G  L   N+      + G G +GKS+ + +I+   G +   + 
Sbjct: 263 KIAVNDKTIRSILEEILGYILFRRNEFAATFILTGNGSNGKSSYLKIIRQLVGEENASSL 322

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
           + +++ Q               L G    I  +  +     ++  K+++ G+ +      
Sbjct: 323 DLNELDQ---------RFKTAELFGKLANIGDDIGKGYIKESSVFKKLSTGETLNVERKG 373

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----DASFAQKLET 649
            + + +           N+   + +  D   RR  ++PF           D     KL +
Sbjct: 374 KDPF-DFTNYAKLIFSANEMPRINDFTDGLGRRLQIVPFKAKFTPEGEDYDPFITDKLLS 432

Query: 650 KYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
             +++      LK +K  + +       +   +   + ++  +   ++++      EN+ 
Sbjct: 433 DESMQYILILALKSLKRLLEEK-KFTKSKAVEEELVKYQEENNPIISFVN-----NENIE 486

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
            E   +   Y +Y+   +    + +S    +  + Q     G K    + + K+KRI 
Sbjct: 487 LERSVVGDVYLQYKVYCVENGFQSVSNINFSKQISQL---FGYKSHVQKVDGKNKRIF 541


>gi|168057313|ref|XP_001780660.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162667928|gb|EDQ54546.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 585

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 149/416 (35%), Gaps = 45/416 (10%)

Query: 319 YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
           Y         D    Y  D     + S     +   +      + +         +    
Sbjct: 169 YDDKFVCSNFDKITIYFFDTKRWALKSSKASMMREILTGMYRFIADVCESY---MKTIEP 225

Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438
             K   F   +D RR+ +   +                   +LLDS    +G + G+ D 
Sbjct: 226 AIKIIDFIQLSDNRRKMMYTCAGM----------LYKEGFEELLDSRRNVIGMKGGVYDF 275

Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLDLVSGYFESEEVMDYFTRCVGMAL 494
              +  +   + YIT ST  PFV  + +     E L+L++  F +E++  YF R +   L
Sbjct: 276 IEDRFRRMESDDYITLSTRIPFVPLDYNSEATNEVLNLLAKVFPNEDIRRYFMRFISSCL 335

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
            G N  + F    G G +GK+ +++L++ AFG+   I    S +M  R  ++  A   L 
Sbjct: 336 EGQNANKIFSIWSGSGDNGKTVMVSLVEGAFGDY-TIKMPTSLLMGKR-VQSSAATLELA 393

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            L    I ++ E +E D++N   +K++TG D +  R  Y       P +    ++ N+  
Sbjct: 394 MLKERLIALVQEPDEGDKLNLGIMKELTGNDSLYIRGLYEEGTI-IPQTTKFVLIANRIP 452

Query: 615 FVRNPDDAWWRRYIVIPFDKPIAN------RDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
                             ++ I +      +D +F+ K+         +  ++  K Y++
Sbjct: 453 Q----------------MNRTIHDLLTTHLKDINFSNKIPL-LAPVFMRLVIEEYKQYLT 495

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
            GL  + P       E      D +  ++    +           L  +Y  + + 
Sbjct: 496 YGL--EEPNEVKDCIETFHVSNDIFGQFLSANVEKNSKSIVAIKELYDTYKYWSKD 549


>gi|228904529|ref|ZP_04068612.1| Phage / plasmid primase, P4 [Bacillus thuringiensis IBL 4222]
 gi|228855093|gb|EEM99669.1| Phage / plasmid primase, P4 [Bacillus thuringiensis IBL 4222]
          Length = 624

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 51/418 (12%), Positives = 138/418 (33%), Gaps = 34/418 (8%)

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
           I    +    ++  + ++   ++K               + ++            +  + 
Sbjct: 231 INEHHICKITNILHIYKDGVYSDKQEDIEEAMIKHIPALKRMQRQETLAYLQLKAKHKNF 290

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
            S           ++  ++G+ +LET Q    T E+         ++     +     ++
Sbjct: 291 ASTK---------YVVVKNGVFNLETWQLEDFTPEIITRNKIPVAYIPDAYYKVTDKTLN 341

Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
                 + +       +G  L   N+      + G G +GKS+ + +I+   G +   + 
Sbjct: 342 KIAVNDKTIRSILEEILGYILFRRNEFAATFILTGNGSNGKSSYLKIIRQLVGEENASSL 401

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
           + +++ Q               L G    I  +  +     ++  K+++ G+ +      
Sbjct: 402 DLNELDQ---------RFKTAELFGKLANIGDDIGKGYIKESSVFKKLSTGETLNVERKG 452

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----DASFAQKLET 649
            + + +           N+   + +  D   RR  ++PF           D     KL +
Sbjct: 453 KDPF-DFTNYAKLIFSANEMPRINDFTDGLGRRLQIVPFKAKFTPEGEDYDPFITDKLLS 511

Query: 650 KYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
             +++      LK +K  + +       +   +   + ++  +   ++++      EN+ 
Sbjct: 512 DESMQYILILALKSLKRLLEEK-KFTKSKAVEEELVKYQEENNPIISFVN-----NENIE 565

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
            E   +   Y +Y+   +    + +S    +  + Q     G K    + + K+KRI 
Sbjct: 566 LERSVVGDVYLQYKVYCVENGFQSVSNINFSKQISQL---FGYKSHVQKVDGKNKRIF 620


>gi|167462196|ref|ZP_02327285.1| phage / plasmid primase, P4 family protein [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 582

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 126/344 (36%), Gaps = 21/344 (6%)

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGEQDGILDLETGQKVKP 446
                   + ++    + A+  E  +   +  + ++S+    +  ++GI +LE     + 
Sbjct: 253 KQQDVESAMIQHLPQLTAAKRKETTAYLELIVEKMNSAPVNLIALENGIYNLEDDTLDEF 312

Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIH 505
           + ++ I       +      +    ++        E+       +G  LL  N+  +   
Sbjct: 313 SPDIIIKNKIPVTYDPDVYDEATDKVLDKISCHDAELRALLEEMIGYLLLRRNELGKCFI 372

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G G +GKSTL++++K   G +   +    +I                 + G    +  
Sbjct: 373 LTGSGSNGKSTLLDMLKNFLGPENYSSLSLDEI---------GHRFKTAEVFGKLANLGD 423

Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
           + +     N A  K++  G+ +       + + E           N+   + +  D   R
Sbjct: 424 DISSQYIDNNAVFKKLVTGETVNVERKGKDPF-EFNNYAKLIFSANQLPRINDTTDGLMR 482

Query: 626 RYIVIPFDKPIA----NRDASFAQKLETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCL 680
           R I+IPF+   +    + D     KL T   ++   +  LKG+K  +S      +P++  
Sbjct: 483 RLIIIPFNAKFSSADADFDPFIKDKLLTDNAMKYLLQIALKGLKRVLSNK-RFTMPDIIK 541

Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
           +   E  +  +   A+ID+     +   E +  +  SYS +  +
Sbjct: 542 RELAEYEKMNNPVMAFIDEG---RKVENETTKEVYLSYSAWCYE 582


>gi|167764655|ref|ZP_02436776.1| hypothetical protein BACSTE_03045 [Bacteroides stercoris ATCC
           43183]
 gi|167697324|gb|EDS13903.1| hypothetical protein BACSTE_03045 [Bacteroides stercoris ATCC
           43183]
          Length = 480

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/384 (15%), Positives = 128/384 (33%), Gaps = 25/384 (6%)

Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS-DLLDSSSRFLGEQDGILDL 438
            +  +         +  E  +K     + L       +   +  ++    +   +G +  
Sbjct: 75  KEITQLLTTVANLGEIHEYKAKHHRFGEELYKQFRSVVKDMETQNTDVVKINCDNGTVVF 134

Query: 439 ETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495
                +     K           +     + EF  +++       +++      +     
Sbjct: 135 GANFVELRPFDKRDCFFYKLNYSYKPDATAPEFQRVLNEALPLDGQMI--LQEYIASIFF 192

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
                Q+ + + G GG GKS ++N+I  A G   V+      +              +  
Sbjct: 193 PRFNHQKALLLYGHGGEGKSLIINIISAALGRDNVVERSVESLCAEESRT-------VAD 245

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L    + I        + N +  K++   + MTA+  Y + Y       +     N+   
Sbjct: 246 LENKLLNICY--EMGSKFNISNFKRLVSKEPMTAKRLYMDPY-TIYDYASLLFACNELPK 302

Query: 616 VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
                +A++RR +++PF   I    +D +  +++          W +KG +  +++G   
Sbjct: 303 NIEYTNAYFRRLMILPFLNQIPVEKQDRTLGERVIQNELSGILNWIIKGAERLLAQG-CF 361

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCC-DIGENLWE--ESHSLAKSYSEYREQELNYDR 730
              E+  +A  E R   D+  ++IDD   +      +      L + Y  Y  +   +  
Sbjct: 362 SKSELVDRALAEYRVDADSVASFIDDSNYEKSTENKDCMALKYLFEGYMNYCSESNCHAC 421

Query: 731 KRISTRTVTLNLKQKGFIGGIKRE 754
              S +T +  LK  GF    K +
Sbjct: 422 ---SRKTFSSRLKGLGFQLVRKSQ 442


>gi|291548659|emb|CBL24921.1| phage/plasmid primase, P4 family, C-terminal domain [Ruminococcus
           torques L2-14]
          Length = 625

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 124/370 (33%), Gaps = 23/370 (6%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
              K   +      +  I  +   S +  +   +GI DL TG+    + ++ IT      
Sbjct: 267 PNLKKMQRREVLDYMELIVDEKEQSDANLIAFNNGIYDLVTGELKPFSTDIVITNKIPWD 326

Query: 460 FVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
           +     S+     ++        +      C+G      N+  +   + G   +GKST +
Sbjct: 327 YKPDAYSELADSTLNKLACGDAAIRALLEECIGYCFYRRNELGKAFILTGDKSNGKSTFL 386

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAA 576
           + +K   G++ +   +  ++             +   + G    I  +  ++       +
Sbjct: 387 DCVKAILGDRNISALDLKEL---------GDRFNTSMMFGKLANIGDDIGDDFLQGSQVS 437

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
             K++  G+ + A     + + E           N    +++   A  RR ++IPF+   
Sbjct: 438 VFKKIVTGNRIKAERKGQDPF-EFNPFIKLLFSANDIPRMKDKTGAVLRRLVIIPFNATF 496

Query: 637 ANRDASFA--QKLETKYTLEAKKWF---LKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
           +  D  +    K E       +      ++G+K  +         +      +E  Q  +
Sbjct: 497 SKDDPDYRPFIKYELTQQDSIEYLIRLGVEGLKRVVINN-GFSKSDKVQNQLDEYEQENN 555

Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
              A+I+D   +     E +  + K Y  +         + +S    +  + ++     I
Sbjct: 556 PILAFIND-TGVDMIENEPTADVYKRYQVFCADN---AMQPMSNIVFSKQINKRLGFRVI 611

Query: 752 KREKIEKEWK 761
           +++   K  K
Sbjct: 612 QKKVNNKNCK 621


>gi|289167298|ref|YP_003445565.1| hypothetical protein smi_0425 [Streptococcus mitis B6]
 gi|288906863|emb|CBJ21697.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 534

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 129/342 (37%), Gaps = 22/342 (6%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGYF-ES 479
            RF+  ++GI D +       T E     + GT +     S      +    +       
Sbjct: 173 RRFILVKNGIYDKKEKLLRPFTHEFVAFSTIGTEYDHFAKSPVIDGWDIDSWLLDLMSGD 232

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
           EE+++   + +  +L G    ++ I   G G  GK T+  LI    G + V + + +   
Sbjct: 233 EELVELIWQVISASLNGNYSYRKSIWFVGEGNDGKGTVQQLITNLVGMRNVASLKLNQFS 292

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYS 598
           +           +L  + G  ++I  +      ++  +    +  G+ +         Y+
Sbjct: 293 E---------RFALSMIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVLVEEKNKQPYT 343

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
                 T     N+    +N  +  +RR+ ++PF K  ++++ ++A K +  Y  E  ++
Sbjct: 344 TV-FKKTVIQSTNELPRFKNKTNGTYRRFAIVPFKKSFSSKEDNWAIKDDYIYREEVLEY 402

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
            LK              P+  ++A E+ ++  DT +A++++  D  E+    S  L   Y
Sbjct: 403 VLKKALEISFD--RFIEPQASIEALEDFKESNDTVKAFVNEWFDKFESTRLPSRFLWWLY 460

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
            E+   E      +++ R     L +      +K++      
Sbjct: 461 QEWCRDEG---VTKLTKRKFETQLAKNIPENWVKKKMRPSGK 499


>gi|225419963|ref|ZP_03762266.1| hypothetical protein CLOSTASPAR_06304 [Clostridium asparagiforme
           DSM 15981]
 gi|225041385|gb|EEG51631.1| hypothetical protein CLOSTASPAR_06304 [Clostridium asparagiforme
           DSM 15981]
          Length = 629

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 123/369 (33%), Gaps = 28/369 (7%)

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
            + A     I  +     +  +   +G+ ++     V  T E  IT      +     S+
Sbjct: 276 EVLAYLDILIRENTQAEDANMIAFANGLYNIVDDSFVAFTPEHIITNKIRWDYNPEAYSE 335

Query: 468 EFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
                ++    +   +       +G      N+  +   + G   +GKST +++++   G
Sbjct: 336 LADKTLNKIACDDPAIRALLEEAIGYCFYRRNELGKAFILTGDKSNGKSTFLSMVQTLLG 395

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
            + + + +  ++                 + G    I  +  +    N A  K++  G+ 
Sbjct: 396 EENIASLDLKEL---------GDRFKTAEMFGKLANIGDDIGDEFIANPAIFKKLVTGER 446

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
           ++A     N + E           N    +++   A  RR  +IPFD   +  D  F   
Sbjct: 447 VSAERKGQNPF-EFNNYSKLLFSANNIPRIKDKTGAVQRRLTIIPFDARFSADDPDFNPY 505

Query: 647 ----LETKYTLEAK-KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
               L+T   +E      + G+K  ++            KA +E  +  +    +  +C 
Sbjct: 506 IKHLLKTDEVMEYLINLGIVGLKRVLTN-RAFTASAKVQKAMDEYEENNNPILGFFKEC- 563

Query: 702 DIGENLW---EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
              E+     E ++ + K Y EY         + +S    +  + +   I  +K      
Sbjct: 564 -EDEDFQIENEPTNKVYKRYQEYCLAN---SLQPMSNIEFSKQVNR---ILNMKVVNKTI 616

Query: 759 EWKSKRIIK 767
           + K  RI  
Sbjct: 617 QNKKYRIFV 625


>gi|329955099|ref|ZP_08296080.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus
           YIT 12056]
 gi|328526389|gb|EGF53404.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus
           YIT 12056]
          Length = 400

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 118/327 (36%), Gaps = 12/327 (3%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            + V+  + +   +  +     F      +  N    +  +   + L     +++    +
Sbjct: 65  DQHVYSYTGKYWVSIDDFDLKIFLREALGKMTNDMVEASQREVVEGLFKQFPYTVMGLAV 124

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
           +     +   +G L+L+TG+  +     Y       P+      Q F+  +      ++ 
Sbjct: 125 EQDKEKINFLNGTLNLKTGRLEQHLYSDYFRYVLPYPYNPNATCQMFMKYLDRVLPDKDT 184

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                  +G       K ++ + + G G +GKS  +++++   G + + +   SD+    
Sbjct: 185 QKVLAEYIGWIFTPL-KLEKCLFLYGSGKNGKSVFVDIVEALLGKENISHESLSDMCGEN 243

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
              +         L G  +   S+   N   +    K++  G+ ++ R  Y +  +    
Sbjct: 244 GDRS------RANLSGKLLNTCSDVAPNA-FSGDIFKRIASGEPISTRQLYKD-VATLTD 295

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFL 660
                   N+     +  + ++RR++++PF   I     D   A+K+ +        W L
Sbjct: 296 YAKMLFCLNELPKTNDKSNGYFRRFLIVPFKVQIPKPEVDPKLAEKIVSTELPGIMNWVL 355

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEER 687
           +G +  I++        +C K  EE R
Sbjct: 356 EGRERLITQ-SGFTESSLCQKQLEEYR 381


>gi|239630759|ref|ZP_04673790.1| DNA primase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527042|gb|EEQ66043.1| DNA primase [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 463

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 120/338 (35%), Gaps = 28/338 (8%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL---DLVSGYFESE 480
           +    +   +G  +L T        E YI +    P+     S++ L   D ++      
Sbjct: 123 ADPNLITFTNGTYNLVTDTLQPHRPEDYILQ--NHPYDLKMKSEKDLKTVDWLAHLTGDP 180

Query: 481 EVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
              ++    +G          Q    ++G G +GK+T +  +K   G + V N    D+ 
Sbjct: 181 ISANFLMEFIGYCFYHRYSPFQALTILQGNGQNGKTTFIEFVKQILGKRNVSNVALQDLA 240

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
                  G       +L      + ++ +++      ++K +TG D   A     + +S 
Sbjct: 241 NKDNRFTGS------QLYQKEANMFADLDDSFLKTTGQLKALTGDDTTFAEFKGKDGFS- 293

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK----YTLEA 655
                      NK     +    + RR  V+PF + I   D +F ++ +           
Sbjct: 294 FMNFAKLIFSANKLPKFSDFTSGFIRRLYVVPFPQKI---DNNFKKEFDLNQIYDEIPAF 350

Query: 656 KKWFLKGVK-AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESH 712
               L+  K A    GL        + AKE   + +D    +I+D C I  +    + S 
Sbjct: 351 SYQCLRAFKCAIDRDGL--SKSPSMIAAKESWLRDSDNIARFIEDRCRIESDTKGGDSSR 408

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
           ++ K+Y +Y  +E   + K  S    T  L+ +G    
Sbjct: 409 NIYKAYQDYCWEE---NIKPFSQPEFTRRLEAQGIPRK 443


>gi|218131558|ref|ZP_03460362.1| hypothetical protein BACEGG_03178 [Bacteroides eggerthii DSM 20697]
 gi|217986490|gb|EEC52827.1| hypothetical protein BACEGG_03178 [Bacteroides eggerthii DSM 20697]
          Length = 531

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 60/435 (13%), Positives = 139/435 (31%), Gaps = 41/435 (9%)

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
           YI++    K                  L +E      N     ++     R      N  
Sbjct: 122 YIYTGCYWK-------------NITRPLLKEFLAVAANKAGFNYYDIRLSRNLERLYNQF 168

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTP 459
                   +                  +  ++G   +   ++      K  +        
Sbjct: 169 VALCTLVPDLNEK---------KDEVKINLKNGTFVISKDKQELRDFDKRDFFKYQLPFE 219

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
           +       EF   ++     +E        +G       K ++ + ++G G +GKS +  
Sbjct: 220 YNPEATCDEFKAFLNEVLPEKESQMILAEYLGYIFTQNLKLEKCLILKGEGSNGKSVIFE 279

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
           +++   G     +   S++                +L G+ ++  S       IN    K
Sbjct: 280 IVQALLGEHNTCSYTISNLCNENG-------YFRAQL-GNYLLNYSSELGGKNINPDLFK 331

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638
           ++   + + AR  YG+ +             NK         A+ RR+I++ F+  I + 
Sbjct: 332 KLISNEPIDARSPYGHPFI-LRHYGKFMFNMNKFPNNIEFTHAYLRRFIILNFEVIIPDE 390

Query: 639 -RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
            +D   A+++ +K       W L+G+   + +           +  EE R  +D+   ++
Sbjct: 391 EQDKHLAERIISKELSGIFNWVLEGLGRLLKQ-QQFTESPKAKELLEEMRFESDSVAQFL 449

Query: 698 DDCC---DIGENLWEESHSLAKSYSEYR--EQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
           ++         N         + Y  Y   ++ +   +K  STR  +L  + +   GG  
Sbjct: 450 EEKQYLPSTSGNDKILLKRFREEYQAYCHIKKLIPVGQKEFSTRIKSLKFEIQKGGGGNN 509

Query: 753 REKIEKEWKSKRIIK 767
              +++   +++ ++
Sbjct: 510 YIFVKRNDIARQFLE 524


>gi|227544668|ref|ZP_03974717.1| possible ATPase [Lactobacillus reuteri CF48-3A]
 gi|227185350|gb|EEI65421.1| possible ATPase [Lactobacillus reuteri CF48-3A]
          Length = 207

 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 14/215 (6%)

Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
           +E  E   +N + +KQ+   D + A   Y   +S    S T  +  N    V   D+  W
Sbjct: 2   AELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIW 60

Query: 625 RRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
           RR IVIPF   IA R+   ++AQ L  K      +W ++G +  I +   +  P    KA
Sbjct: 61  RRLIVIPFKATIAKRNDIKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKA 120

Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
                   D    ++++ C++     ++S  L + Y EY +    Y R   ST      L
Sbjct: 121 VNAYHADNDWLGHFLNEKCELNPEYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTAL 177

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
           K  GF    K+        + R I+GL+LK   + 
Sbjct: 178 KNAGFQRQHKQ--------NGRFIEGLRLKVDADE 204


>gi|323485263|ref|ZP_08090613.1| phage/plasmid primase [Clostridium symbiosum WAL-14163]
 gi|323401441|gb|EGA93789.1| phage/plasmid primase [Clostridium symbiosum WAL-14163]
          Length = 625

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 52/370 (14%), Positives = 125/370 (33%), Gaps = 23/370 (6%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
              K   +      +  I  +   S +  +   +G+ DL TG+    + ++ IT      
Sbjct: 267 PNLKKMQRREVLDYMELIVDEKEQSDANLIAFNNGVYDLVTGELKPFSTDIVITNKIPWD 326

Query: 460 FVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
           +     S+     ++        +      C+G      N+  +   + G   +GKST +
Sbjct: 327 YKPDAYSELADSTLNKLACGDAAIRALLEECIGYCFYRRNELGKAFILTGDKSNGKSTFL 386

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAA 576
           + +K   G++ +   +  ++             +   + G    I  +  ++       +
Sbjct: 387 DCVKAILGDRNISALDLKEL---------GDRFNTSMMFGKLANIGDDIGDDFLQGSQVS 437

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
             K++  G+ + A     + + E           N    +++   A  RR ++IPF+   
Sbjct: 438 VFKKIVTGNRIKAERKGQDPF-EFNPFIKLLFSANDIPRMKDKTGAVLRRLVIIPFNATF 496

Query: 637 ----ANRDASFAQKLETKYTLEAKKWF-LKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
                + D     KL  + ++E      ++G+K  I         +       E  +  +
Sbjct: 497 SKDSPDYDPFIKYKLIQQESVEYFIRLGVEGLKRIIIND-GFTKSDKVQNQLTEYEEENN 555

Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
              A+I+D   +     E +  + K Y  +         + +S    +  + ++     I
Sbjct: 556 PILAFIND-TGVDMIENEPTADVYKRYQVFCADN---AMQPMSNIVFSKQINKRLGFRVI 611

Query: 752 KREKIEKEWK 761
           +++   K  K
Sbjct: 612 QKKVNNKNCK 621


>gi|48696649|ref|YP_024428.1| integrase [Vibrio phage VP2]
 gi|40950047|gb|AAR97638.1| integrase [Vibrio phage VP2]
          Length = 762

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 126/800 (15%), Positives = 235/800 (29%), Gaps = 130/800 (16%)

Query: 10  AKQAIHNGFKLIPLRLGDKR-PQRLGK--WEEQLLSSEKIDKLPA-------CGFGFVCG 59
           A+  I NG  +IP+    K  P ++    ++    +   ID              G  CG
Sbjct: 25  ARFYIKNGLYVIPVMPNGKSLPSKMYNIGYQHASKNKNTIDSWFGVGGRFRGFNLGIACG 84

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDT--FEILHGT--PIVRIGQKPKILIPF---RMNKEG 112
                ++A DID +D K    F +    E  +G     ++          F   +  K  
Sbjct: 85  KR-GGVFAVDIDVEDSKGNRGFDNLAILEEKYGKLVAPIQETPTGGRHYLFQWDKYAKSS 143

Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
             K      T+G  D   C  + VA+        EYTW+ P     + D P + +   + 
Sbjct: 144 SGKIAKAIDTRGG-DEDSCKSHIVAWPSVRDEG-EYTWSMP----TLGDVPEIPKWISDA 197

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY-------NGS 225
           L                  +P     N  + +    ++    +                 
Sbjct: 198 L-----------------GVPWTGNMNRGSEEIDEDDLETRYTPRQIWRMLEYIDPDELE 240

Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285
           +DEW+ V+ AVH +      G E+A RWS++G+ Y  +  + +W +FD            
Sbjct: 241 YDEWLAVLQAVHSQYPDDQ-GYELADRWSQRGARYKPDEVSIRWQSFDEHGTIRVG---- 295

Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
           T       +G         +        ++ + Y K   +     K     ++ N   + 
Sbjct: 296 TLIYFAQKNGFKPNTEPKGAEEPSEDTDSVVAEYNKKFGVVMVGNKLRILMEQFNPDPFQ 355

Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
                   S+ +F   M  D+    +  +  +K  +    WF  + RR+ V   +     
Sbjct: 356 DNF--KLMSVQDFKALMANDIVWYGD-SKGKSKPVQKSDIWFVNEKRREFVNGLTFMPDK 412

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE- 464
            + ++                                              G  + E   
Sbjct: 413 PREVDGCFNVWE---------------------------------------GWRYKEVAG 433

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
               F   V     S+E  ++       AL    N     + ++G+ G+GK T+ N+   
Sbjct: 434 DWSLFKKHVKAVVGSQEHYEWLMDWFADALQDPMNPKGCAVVMKGIEGTGKGTIANVFGE 493

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMT 582
            FG  Y    +   ++                L  + +V   E     ++  A  +K + 
Sbjct: 494 LFGQHYKHIIQEEQLIGKFNG----------HLEEALLVFADEVTYGGNKKVAGTLKGLV 543

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
               +       +            I  N+  F+     +  RR+ VI      A+  + 
Sbjct: 544 TEKKLMIERKGLDAT-PYRNCLRLMIASNEDWFIPAGPHS--RRWFVIDVPDSFASDKSY 600

Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
           F    +       +    +     I   L        L  +      TD+   W  D  +
Sbjct: 601 FDAIWKQMENGGYEAMMYELRNREIKSDLRKAPETKLLMEQRARYTTTDSVVEWWADKVE 660

Query: 703 IG-------ENL--------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
            G       E          + +  SL   Y E+ +       KR++       + ++ F
Sbjct: 661 AGVIGVTGYEEFGDEVDWPQFVDKASLYVDYQEWCQANGA---KRLTKPAFYAKV-ERDF 716

Query: 748 IGGIKREKIEKEWKSKRIIK 767
                R         KR+ +
Sbjct: 717 KFVDCRPANPHGGPRKRMFE 736


>gi|281354915|ref|ZP_06241409.1| phage/plasmid primase, P4 family [Victivallis vadensis ATCC
           BAA-548]
 gi|281317795|gb|EFB01815.1| phage/plasmid primase, P4 family [Victivallis vadensis ATCC
           BAA-548]
          Length = 474

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 170/462 (36%), Gaps = 50/462 (10%)

Query: 325 LYTADTKAWYKKDKNNVYIWS--LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
           LY       + KD+   +++     L +  +S    L  + + +                
Sbjct: 46  LYCQARNLLFDKDEKKFFLYDQSTGLWQEQSSNAQ-LCDVAQLIMQYV------------ 92

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG- 441
           P  +      R   +  S  K  A+   A           +     +   +GIL+  +G 
Sbjct: 93  PNDYIRLSTSRMISQIQSFIKGLAEKRGAFQ---------NKKKNVIHVANGILEFISGG 143

Query: 442 --QKVKPTKELYITKSTGTPFVEGEPSQEFLD-LVSGYFESEEVMDYFTRCVGMALLGGN 498
             +   P  E Y    +   +       +FLD L+      EE +    +  G+ LLG N
Sbjct: 144 GWELRNPQPEDYSRNRSEIIYNPESQCPQFLDQLLGEAMP-EEDISLLQQYAGLVLLGYN 202

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
            +Q+ + + G  G GKSTL+N+++   G           + Q            + R +G
Sbjct: 203 LSQKVLLLTGSAGGGKSTLVNILEGLIGRHNCCELRTEHLDQ---------RFEIARFVG 253

Query: 559 SRIVIISETNENDEINA---AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
             ++   +  ++  +N    AKIK +TG D +TA     +T  +   +F   I  N  L 
Sbjct: 254 KTLLTAKDV-KSSFLNTPGAAKIKALTGKDTLTADFKGVSTGVDVIGNFNVVITANTELH 312

Query: 616 V--RNPDDAWWRRYIVIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
           V      +AW RR + I ++ P  +   A F +K+ T+       W L+G +  + +G  
Sbjct: 313 VALDGDKEAWRRRLLWIKYELPPTSTPIADFDEKILTEEGAGVLNWALEGARKLLVEGGK 372

Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
           + +     +  ++    +DT   ++  C  +   L   S  L   +  Y + +       
Sbjct: 373 IRMTAKQTERVDKLLLESDTVGQFVHKCIVLSPGLNATSEELWSQFYHYCDYQGLT---P 429

Query: 733 ISTRTVTLNLKQKGFIGGIKRE--KIEKEWKSKRIIKGLKLK 772
            S +   + LK          +  +I +    KR  +G++++
Sbjct: 430 GSRKQFFIELKNAMLTKFHLSQSHRISRGNTLKRGYEGIRIR 471


>gi|254463719|ref|ZP_05077130.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I]
 gi|206684627|gb|EDZ45109.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I]
          Length = 890

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 105/670 (15%), Positives = 192/670 (28%), Gaps = 82/670 (12%)

Query: 13  AIHNGFKLIPL-------RLGDKRPQRLGKWEE--QLLSSEKIDKLPAC-----GFGFVC 58
            +  G++ +P+       +   KRP  +  WE         +I +           G VC
Sbjct: 40  LLRGGYRPVPVLGAHVAMKAAGKRPM-MKGWETVCASADETEITRWTKAQRNCTNTGLVC 98

Query: 59  GVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKEGIKKKK 117
           G     L   DID  D   A+        + G +P+ RIG+ PKIL+ FR +    K + 
Sbjct: 99  G----DLIGVDIDVLDRDHAHRLTFIATEMLGMSPLSRIGRAPKILLAFRTDAPFDKVQT 154

Query: 118 T----TESTQGHLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVEDTPLLSEEDVEY 172
           +     + T   +++L  GQ FV + IHP TK  Y W    P    + + P++S++    
Sbjct: 155 SEFHMLDGTVARVEVLATGQQFVGFGIHPDTKAPYHWPECSPLDVSLHELPVVSQDRCAA 214

Query: 173 LFKFFQEITVPLV--KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS--HDE 228
                +     +            +        +         +        N    +D+
Sbjct: 215 FISAAEGYFRKVGGQTTSDRREIDREGRKAAGLKQKEAPSRELIEEAVAHISNDELPYDD 274

Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
           WI V +A++      S G+++   WS + S  D      KWD+F             T  
Sbjct: 275 WIKVGLALY--AALGSDGRDLWETWSAEASKNDPAYSAEKWDSFANVRSV-------TVG 325

Query: 289 SLFYHHGKLIPKGLLASRFS--DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
           +LF+   +   +   A R            +             + +       V +   
Sbjct: 326 TLFWLARQNGWRAEQAQRMRPARPTRNPDDADEDAPDEDTRPAIRIYAGFLHETVDMAEG 385

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS---------PRFWFNTDYRRQNVE 397
            L +           +           +    ++              +      ++  +
Sbjct: 386 ALMQAGLGYYQRGSMVVRPAMVPVAIADGRKIDAPRLVDVKAHHMAEAFTRAANWKRFDK 445

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG--------ILDLETGQKVKP--- 446
              K  ST         F +            G  +         ILDL           
Sbjct: 446 REGKWLSTDCPHRIAETFLVREGQW-RLPVLTGIINCPTLRPDGSILDLPGYDAQTGLLF 504

Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGY---FE---SEEVMDYFTRCVGMALLGG--N 498
             +                +Q  L  +      F      +        +  AL+     
Sbjct: 505 DPQDVHFPMLPRDPDR-ATAQRALAFLKDLISTFPFVTDAD-RSVALSGILTALIRRSLP 562

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
            A          G+GKS L++L              A  I Q +  E  +       + G
Sbjct: 563 TAPLHGFNAPTAGTGKSMLVDLASLI-----ATARPAPVIAQGKSEEEMEKRLGAALIAG 617

Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
             ++ I    E   +    + Q      +  R+   +  +E P++   F   N      +
Sbjct: 618 DVLIAIDNCEE--PLGGELLCQTLTQTSLKVRILGKSVNAEVPSNAAVFATGNNLTLEGD 675

Query: 619 PDDAWWRRYI 628
                 RR +
Sbjct: 676 MT----RRAV 681


>gi|168705299|ref|ZP_02737576.1| Phage/plasmid primase P4-like protein [Gemmata obscuriglobus UQM
           2246]
          Length = 981

 Score =  198 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 113/356 (31%), Gaps = 28/356 (7%)

Query: 426 SRFLGEQDGILDLE------TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478
             F+   +G++D+              T   +   +    F        FL  +      
Sbjct: 536 REFVACANGLIDVAELFATGRATLHPATPLYFTPAAIPVAFDPAAECPTFLRFLDRVTEG 595

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             E         G  L    + Q+F  + G G +GKST +  ++   G+    +    + 
Sbjct: 596 DAERQSLLQEIAGYLLRFDTRFQQFFLLTGDGANGKSTFLAALRALIGDHNYASVPLEEF 655

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                        +L   +G  +  ++E  E D++  AK+K   GGD MT         S
Sbjct: 656 ---------GERFTLGATLGKLVNAVAEVGELDKVAEAKLKSFVGGDLMTFDRKNKAPVS 706

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA-----SFAQKLETKYTL 653
               +    +  N      +  +  WRRY ++PF   I+  +           + +    
Sbjct: 707 A-RPTARLLLSTNTPPRFADRTEGVWRRYQLVPFTAVISAEERVRGMSEPEWWVSSGELP 765

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
               W L G+               C  AK E R+  + ++ ++ +     E        
Sbjct: 766 GVLNWALAGLLRLHRAN-GFTSSAACEAAKAEHRELCNPHRLFLGEHVRAQEGAALRCVE 824

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
           L  +Y E+  Q        ++       +++      + + +     + + +  G+
Sbjct: 825 LFAAYVEWCRQRR---YLPLADGNFGAEVRK--VFRRVTKSRPRNGRERQNVYSGV 875


>gi|255693187|ref|ZP_05416862.1| putative primase [Bacteroides finegoldii DSM 17565]
 gi|260621080|gb|EEX43951.1| putative primase [Bacteroides finegoldii DSM 17565]
          Length = 400

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 112/312 (35%), Gaps = 12/312 (3%)

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
            +     F      R  N    +  +   + L     +++    ++     +  Q+G  +
Sbjct: 80  DDFDLKIFLREALGRMTNNMVEASQREVVEGLFKQFPYTVMGLAVEQDKEKINFQNGTFN 139

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG 497
           L+TG+  +     Y       P+      Q F+  +      ++        +G      
Sbjct: 140 LKTGRLEQHLYLDYFRYVLPYPYNLNATCQMFMKYLDRVLPDKDAQKVLAEYIGWIFTPL 199

Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
            K ++ + + G G +GKS  +++++   G + + +   SD+       +         L 
Sbjct: 200 -KLEKVLFLYGSGKNGKSVFVDIVEALLGKENISHESLSDMCGENGDRS------RANLS 252

Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
           G  +   S+   N   +    K++  G+ ++ R  Y +  +            N+     
Sbjct: 253 GKLLNTCSDVAPNA-FSGDIFKRIASGEPISTRQLYKD-VATLTDYAKMLFCLNELPRTN 310

Query: 618 NPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
           +  + ++RR++++PF   I     D   A+K+ +        W L+G K  I++      
Sbjct: 311 DKSNGYFRRFLIVPFKVQIPKSEVDPKLAEKIVSTELPGIMNWVLEGRKRLITQ-SGFTE 369

Query: 676 PEVCLKAKEEER 687
             +C K  EE R
Sbjct: 370 SSLCQKQLEEYR 381


>gi|48696691|ref|YP_024985.1| putative integrase [Vibrio phage VP5]
 gi|40806154|gb|AAR92072.1| putative integrase [Vibrio phage VP5]
          Length = 762

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 126/800 (15%), Positives = 234/800 (29%), Gaps = 130/800 (16%)

Query: 10  AKQAIHNGFKLIPLRLGDKR-PQRLGK--WEEQLLSSEKIDKLPA-------CGFGFVCG 59
           A+  I NG  +IP+    K  P ++    ++    +   ID              G  CG
Sbjct: 25  ARFYIKNGLYVIPVMPNGKSLPSKMYNIGYQHASKNKNTIDSWFGVGGRFRGFNLGIACG 84

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDT--FEILHGT--PIVRIGQKPKILIPF---RMNKEG 112
                ++A DID +D K    F +    E  +G     ++          F   +  K  
Sbjct: 85  KR-GGVFAVDIDVEDSKGNRGFDNLAILEEKYGKLVAPIQETPTGGRHYLFQWDKYAKSS 143

Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
             K      T+G  D   C  + VA+        EYTW+ P     + D P + +   + 
Sbjct: 144 SGKIAKAIDTRGG-DEDSCKSHIVAWPSVRDEG-EYTWSMP----TLGDVPEIPKWISDA 197

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY-------NGS 225
           L                  +P     N  + +    ++    +                 
Sbjct: 198 L-----------------GVPWTGNMNRGSEEIDEDDLETRYTPRQIWRMLEYIDPDELE 240

Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285
           +DEW+ V+ AVH +      G E+A RWS++G+ Y  +  + +W +FD            
Sbjct: 241 YDEWLAVLQAVHSQYPDDQ-GYELADRWSQRGARYKPDEVSIRWQSFDEHGTIRVG---- 295

Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
           T       +G         +        ++ + Y K   +     K     ++ N   + 
Sbjct: 296 TLIYFAQKNGFKPNTEPKGAEEPSEDTDSVVAEYNKKFGVVMVGNKLRILMEQFNPDPFQ 355

Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
                   S+ +F   M  D+    +  +  +K  +    WF  + RR+ V   +     
Sbjct: 356 DNF--KLMSVQDFKALMANDIVWYGD-SKGKSKPVQKSDIWFVNEKRREFVNGLTFMPDK 412

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE- 464
            + ++                                              G  + E   
Sbjct: 413 PREVDGCFNVWE---------------------------------------GWRYKEVAG 433

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
               F   V     S+E   +       AL    N     + ++G+ G+GK T+ N+   
Sbjct: 434 DWSLFKKHVKAVVGSQEHYGWLMDWFADALQDPMNPKGCAVVMKGIEGTGKGTIANVFGE 493

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMT 582
            FG  Y    +   ++                L  + +V   E     ++  A  +K + 
Sbjct: 494 LFGQHYKHIIQEEQLIGKFNG----------HLEEALLVFADEVTYGGNKKVAGTLKGLV 543

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
               +       +            I  N+  F+     +  RR+ VI      A+  + 
Sbjct: 544 TEKKLMIERKGLDAT-PYRNCLRLMIASNEDWFIPAGPHS--RRWFVIDVPDSFASDKSY 600

Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
           F    +       +    +     I   L        L  +      TD+   W  D  +
Sbjct: 601 FDAIWKQMENGGYEAMMYELRNREIKSDLRKAPETKLLMEQRARYTTTDSVVEWWADKVE 660

Query: 703 IG-------ENL--------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
            G       E          + +  SL   Y E+ +       KR++       + ++ F
Sbjct: 661 AGVIGVTGYEEFGDEVDWPQFVDKASLYVDYQEWCQANGA---KRLTKPAFYAKV-ERDF 716

Query: 748 IGGIKREKIEKEWKSKRIIK 767
                R         KR+ +
Sbjct: 717 KFVDCRPANPHGGPRKRMFE 736


>gi|310639695|ref|YP_003944453.1| primase, putative [Paenibacillus polymyxa SC2]
 gi|309244645|gb|ADO54212.1| Primase, putative [Paenibacillus polymyxa SC2]
          Length = 554

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 72/472 (15%), Positives = 149/472 (31%), Gaps = 36/472 (7%)

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
            +F    +   +YK   +           +  S      +    ++   +    ++ +S+
Sbjct: 92  ENFKVKDNNTRFYKTSSDRGNFVPRVEWLMLNSFEMISSADGISIYQTKQGYYKHHSDSE 151

Query: 382 SPRFWFNTDYRRQNVE-ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
                       QN E    K    A  L+         + L++ +  +  +DG+L+L  
Sbjct: 152 LAVLIRKNLTEDQNREVSRRKMDEVAYRLKTHPDLWRKFNDLNTDTNLINFRDGVLNLRE 211

Query: 441 GQKVKPTKELYITKSTGTPF----------VEGEPSQEFLDLVSGYF-ESEEVMDYFTRC 489
            + +    +   T                  +   S  F   ++      +       + 
Sbjct: 212 RRMLPHDPKYCFTSFIDADCKVIPQQNTNNRDYSYSSVFECFLTDCTEGDKAKQASLQQM 271

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           VG  +     A++   + G   +GKS  ++L++   G ++  +     +  NR  +    
Sbjct: 272 VGYIISNHFNAKKMFVLIGEPHTGKSVWLSLLQILIGKEHTTSMTLKQLGVNRFMQT--- 328

Query: 550 NPSLIRLMGSRIVIISE-TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
                RL  S++ I  E +++ D      IK +TGGD +T     G    +         
Sbjct: 329 -----RLAHSKLNISPEMSDDGDLKGVEFIKAVTGGDLITGDRK-GEAAIDFYGRTKLVA 382

Query: 609 VPNKHLFV--RNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVK 664
             N    +   +   A+  R + I F+  I  R  D    QKL  +      KW L+G+ 
Sbjct: 383 AGNHMPKLAKHDGTTAFIDRLLFITFNNSIPERQRDRFLLQKL-LEERDIIIKWALEGLY 441

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN---LWEESHSLAKSYSEY 721
             I            ++ K++     D    +++D C +             L  +Y  Y
Sbjct: 442 QLIDNNFIFTECNEAIQFKKKYMAELDNVTEFVNDMCVVEPENDKSRVHRTRLYDAYIIY 501

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            +       K          +++     G  R +           +G++L  
Sbjct: 502 CKANGLTSVK---KTEFWREIEKFRVRSGKIRVE---GSTPLMGYRGIRLLS 547


>gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040867|gb|ACT57663.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 233

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 132/229 (57%), Positives = 167/229 (72%)

Query: 45  KIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILI 104
            +D     GFG +CG+G  P+YAFD+D  DE+  + F + F+   G PI R+GQ PK L+
Sbjct: 5   DVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLM 64

Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
            FRM +  +KK+K+ E  QGHL+ L  GQ FVAYNIHPKT++ YTW+  PH  KVE+ PL
Sbjct: 65  LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124

Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
           L+ ++VEY F+FF  IT P  K+K     SK W ++NNR+YTN EI AFLSCFGEEFYNG
Sbjct: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNG 184

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
           SHDEWIPVVMA+H+ETRGS++GKEI R W K G TYDE++FN KWD+FD
Sbjct: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233


>gi|313633561|gb|EFS00357.1| gp60 [Listeria seeligeri FSL N1-067]
          Length = 217

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 18/229 (7%)

Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
            + RL G+R V  +E N+   ++   +KQ+TGGD +TAR  Y + + E    F  ++  N
Sbjct: 1   DIARLHGARFVTTTEPNDGVRLDEGLVKQLTGGDKVTARHLYKDEF-EFTPEFKIWMATN 59

Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISK 669
               +R  DD  WRR  ++PF   I +   D     KL          W ++G   +  +
Sbjct: 60  HKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGILNWAVEGFLKWQRE 118

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           GL   +P+    A  E     D   A+I+DCCD+ E     +  + ++Y E+ +    Y 
Sbjct: 119 GL--GMPKAVENASSEYXXXXDVITAFIEDCCDVREGEKVNAKKMYETYREWAKDNGQY- 175

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
              +S+      +       G+K EK  K  K      G+ L   + S+
Sbjct: 176 --LMSSTKFGKEM-------GLKFEK--KRSKKGYKYTGVCLNDEYFSL 213


>gi|320140806|gb|EFW32654.1| nucleoside triphosphatase, D5 family [Staphylococcus aureus subsp.
           aureus MRSA131]
          Length = 678

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 86/702 (12%), Positives = 213/702 (30%), Gaps = 84/702 (11%)

Query: 92  PIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT 151
                      L  F   K  +   +  + T   +++    ++                 
Sbjct: 5   TYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDSARFMTVTGC----------- 51

Query: 152 TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT 211
               +  + D   +    V+  FK        + ++  +          ++    N  + 
Sbjct: 52  -TIGQSDICDNQEVLNTLVDEYFKENLPANEVVREESNTN------IQLSDEDIINIMMK 104

Query: 212 AFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRGSSKGKEIARRWSKQGSTYDE 262
           +      ++   G+++ +       V   +H+      +   + + I   ++     ++ 
Sbjct: 105 SKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKNKQQMERIFLNYNNLTDKWES 164

Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322
           +  N  W      E+    K + T  +       +IP+G           K + +     
Sbjct: 165 KRGNTTW---GQLELDKAIKNQKTIYTKSIDEFNVIPQGSKD-------VKQLLNQLGHE 214

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
                       +      +I      +   +I + +         L+    D+ +N+K 
Sbjct: 215 E-----------RTKMEENWIEEGKRGRKPTTI-SPIKCAYILNEHLTFILFDDEENTKL 262

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSITSDLLD-----SSSRFLGEQD 433
             + F+     QN     +  S  +    S +A  +    ++++D     +S   +  ++
Sbjct: 263 AMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHLTNMVDIKEKTNSPYLIPVKN 322

Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGY-FESEEVMDYFT 487
           G+ + +T Q    T +   T    T +V  +   E         +        +V+    
Sbjct: 323 GVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWNIDRWIEEIACNDNQVVKLLW 382

Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
           + +  ++ G    ++ I   G G +GK T   L+    G   + + + ++  +       
Sbjct: 383 QVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELLSNVIGYSNIASLKVNEFDE------- 435

Query: 548 KANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
                L  L G   VI  +      ++  +  K +  GD +            +    T 
Sbjct: 436 --RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVEFKNK-PLYRATFKCTV 492

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
               N     ++      RR +++PF+        +F  K +     +  ++ L      
Sbjct: 493 IQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYIKNQQVLEYVLYKAINL 552

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
             +    DIP+   K  E  ++  D    +  +  D         + +   Y EY ++  
Sbjct: 553 DFE--TFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTIRKVPKYIVYAFYKEYCDENG 610

Query: 727 NYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766
                 +S+       +   + +     + + + E  +KRI 
Sbjct: 611 ---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 649


>gi|168026035|ref|XP_001765538.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683176|gb|EDQ69588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 311

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/270 (23%), Positives = 116/270 (42%), Gaps = 19/270 (7%)

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           E LDL++  F +E++  YF R +   L G N  + F    G G +GK+ +++L++ AFG+
Sbjct: 12  EVLDLLAKVFPNEDIRRYFMRFISSCLEGRNANKIFSIWSGSGDNGKTVMVSLVERAFGD 71

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
             V     S +M  R  ++  A P L  L G  I ++ E +E D++N   +K++TG D +
Sbjct: 72  YAV-KMPTSLLMGKR-VQSSAATPELAMLKGRLIALVQEPDEGDKLNLGVMKELTGNDSL 129

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--------- 638
             R  Y       P +    ++ N+ L +   D A W R  V+PF     +         
Sbjct: 130 YIRGLYEEGAI-IPQTAKFVLIANRILQMSTFDKAVWSRVRVMPFVSTFVDKIEPSHNPL 188

Query: 639 ----RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
               +D +F+ K+         +  ++  K Y++ GL  + P+      E  R   D + 
Sbjct: 189 TTHLKDINFSNKIPL-LAPVFMRLVIEEYKQYLTYGL--EEPDEVKDCTETIRVSNDIFG 245

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
            ++    +           L  +Y  + + 
Sbjct: 246 QFLSANVEKSNKSIVAIKELYDTYKYWSKD 275


>gi|171913150|ref|ZP_02928620.1| primase, putative [Verrucomicrobium spinosum DSM 4136]
          Length = 599

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 88/469 (18%), Positives = 161/469 (34%), Gaps = 50/469 (10%)

Query: 317 SIYKKGHFL-YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED 375
           + Y + H   Y      +Y+  +N     +    KI+   +                   
Sbjct: 164 TKYTQEHKCIYHGSEGEFYEYSQN-----TGLYSKISKETIKRRFL-------------- 204

Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
           +   + +           +     +   +  QS+         S + D     +   +G+
Sbjct: 205 DELKNAAKVLGMPQLQILRKDSTVTSLLALLQSVVEQ------SRIFDEKPEAIHVANGM 258

Query: 436 LDLETGQKV--KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493
           +  E  + +            +    +V       FL  +      EE ++   +  G  
Sbjct: 259 ICFEEDKVLLKSFHPSFLSRNACPYQYVPTATCNRFLTELLQPALREEDINMLQKWAGSV 318

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           LLG NKAQR + + G  G GKSTLM +++   G+Q V       +              L
Sbjct: 319 LLGNNKAQRLMMLLGSAGGGKSTLMTVLEGVIGSQNVAQMRTEHL---------GERFEL 369

Query: 554 IRLMGSRIVIISET--NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
           +  +G  ++   +          A+ IK + GGD + A     N   +   +F   I  N
Sbjct: 370 LSFVGKTLLTGKDVAAEFLRHKGASTIKSLVGGDLLEAEKKGFNNRVQIRGNFNIGITCN 429

Query: 612 KHLFVR--NPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYIS 668
             L +R     DAW RR +V+ +  P   +  S F Q+L  +      +W ++G  A I 
Sbjct: 430 ADLVIRLEGDVDAWRRRLLVLRYVAPPPKKRISGFDQELLKQEGAGILRWMVEGAIALIR 489

Query: 669 K---GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
                 D  + E      E     +D+ + ++ DC +  E        L + Y EY +  
Sbjct: 490 DLRTHGDYVLTERQQDQIEALLDQSDSIKLFVRDCLERSEGTDVTKKELEQEYCEYCD-- 547

Query: 726 LNYDRKRISTRTVTLNLKQKGFI--GGIKREKIEKEWKSKRIIKGLKLK 772
                  +STR ++  L  K            I +    +R  +G+++K
Sbjct: 548 -TMGWSPLSTREISQQLNDKILKIHKVSCSHDIRRIGSQQRGFRGIRMK 595



 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 47/158 (29%), Gaps = 8/158 (5%)

Query: 46  IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
           +  L     G + G     L A DID  D+ +   F +    L  T   R      + + 
Sbjct: 7   LQHLQTGNIGVLLGKESDNLCAIDID--DDDSVEPFLELNPRLRSTT--RTKGARGVQLW 62

Query: 106 FRMNKEGIKKKK-TTESTQGHLDILGCGQYFVAYNIHPKTKKEYT--WTTPPHRFKVEDT 162
            R N E  K  K   E      +    G   V + IHP +  EY     T P      + 
Sbjct: 63  IRCNGEYPKVTKIENEEGHPCGEWRADGGQSVIHGIHP-SGVEYRILVATSPILIAFSEI 121

Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200
              S+  + ++   +  I                  N 
Sbjct: 122 TWPSDWQLPWVKSPYDRIVDEEGPPVLEAANGGITLNQ 159


>gi|258510492|ref|YP_003183926.1| ATPase-like protein [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius DSM 446]
 gi|257477218|gb|ACV57537.1| ATPase-like protein [Alicyclobacillus acidocaldarius subsp.
            acidocaldarius DSM 446]
          Length = 1039

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 64/394 (16%), Positives = 138/394 (35%), Gaps = 40/394 (10%)

Query: 419  SDLLDSSSRFLGEQDGILDLET-----GQKVKPTKELYITKSTGTPFVEGEPSQ------ 467
             ++ ++    +   +G+LD+        +    + +  I      PF E           
Sbjct: 626  HEVWNTEP-LVPFANGLLDMSDPFDHDWRVYDFSPKHRINWKLTIPFFENWHRTPKSWTL 684

Query: 468  -------EFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMN 519
                   + LD     F  +E        +G  L       + +  + G G +GKSTL+ 
Sbjct: 685  AMKDAEVDVLDFFRTTFPDDETRRSILEFLGYCLCRWDQSEECYAILYGPGQNGKSTLLG 744

Query: 520  LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
            ++  AFG   V  +  S           +   +   L  + I I+ +       + + +K
Sbjct: 745  MLAKAFGVYAVTESVQSL---------ERNRFASACLTRAAIDIVPDMAGTGIEDTSFLK 795

Query: 580  QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
               G D + A   +  ++ E           N+    ++P   ++RR ++ P  +    +
Sbjct: 796  GWIGNDVVRAERKFKASF-EFKPQTKLIYGANELPPTKDPTHGYFRRILLYPMMERFKRQ 854

Query: 640  DASFAQKLETKYTLEAKKWF-LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
               + ++L T   L    +  L   +    +G ++   +  L+ K+   +  D  +A ID
Sbjct: 855  GPGWVERLRTPEALSYMCYLGLLHYRQMRREGRNITESKEMLREKDFYWRANDLVKAAID 914

Query: 699  D-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
            +   ++G++       L K+   Y ++                 L++       K +   
Sbjct: 915  EGIIELGKDYSVPRDLLQKAMEIYAKETGR------KYPGAAKLLERLRNYAPHKIDYSR 968

Query: 758  KEWKSKRI--IKGLKLKPAFESVDDNSNIIDFKR 789
              WK  RI    G++L  A  S+  +  +++  R
Sbjct: 969  PRWKGGRIHVWTGVRLGEAGRSLLVSREVVNLDR 1002


>gi|116872632|ref|YP_849413.1| phage-related DNA primase/helicase, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|116741510|emb|CAK20634.1| phage-related DNA primase/helicase, putative [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 780

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 99/772 (12%), Positives = 203/772 (26%), Gaps = 88/772 (11%)

Query: 20  LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74
            IP+               W +   +   ++K    G GF     + P +  DID     
Sbjct: 31  KIPMNANTGAYGNSVDERTWADFETALASLEKYQFDGLGFYF---KAPYFGVDIDDIKDD 87

Query: 75  ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
                   T N   +  + L       +      +I                  +G++++
Sbjct: 88  IQDYLYGNTENIAGEFIQTLASYTEYSVSGTGIHII-------AKGDFPEGGRRKGNIEM 140

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
              G++FV           Y         +V +     +   E      +  ++   ++ 
Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATSAIKILHEKYIGTIENTSLTKHQNS 189

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243
            + +                             +   +       +A  +          
Sbjct: 190 SNDLSESEILEKAYNSQNGPYFKTLYEG----NWEAYYASQSDADLAFANMLAFWTAADY 245

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
            K   I R        +D++      +T+    +G      S   S              
Sbjct: 246 DKMDTIFRDSGLMRDKWDQKRGQ---NTYGQITLGKAISGCSEVYSPKQSGNSYNINLKS 302

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT----ASIMNFL 359
              ++   N+                     +K K    I      + +          L
Sbjct: 303 RKNWAQLLNERRKKEL---------------EKLKEEWLISGGKGKQPSVISPIGCAIIL 347

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA---GSIFS 416
                       E        +    W   +   +      +    A             
Sbjct: 348 KEFFRFCLFNMNENTRLAMYLEEDGIWTQNETYIRRFIGFLEPTLNANKASDVIYHLWKG 407

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LD 471
                   S   +  ++G+ +L+T +    T +   T    TP+V   P Q         
Sbjct: 408 AEVKEKTVSKYLIPVKNGVFNLKTKKLEAFTPDYVFTSKIATPYVANPPKQNINGWDVHT 467

Query: 472 LVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            +       E++     + +  +L G    +  I + G G +GK T   L++   GN  +
Sbjct: 468 WLDEIACGDEQITSLLWQVISASLNGNYSRKSSIWLLGDGNNGKGTFQQLLRNLIGNSNI 527

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTA 589
              +     +           SL  L      I  +      I+  +    +  GD +  
Sbjct: 528 ATLKLPQFQE---------RFSLSILEEKVCCIGDDVPAGVYIDDSSNFNSVVTGDEIMV 578

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET 649
                + YS      T     N    +RN  D  +RR+I++PF   +     ++  K E 
Sbjct: 579 EQKNKHPYSA-NFHMTVIQSTNGMPKMRNKTDGTYRRFIIVPFKANLKGGKDNWKIKDEY 637

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
               E  ++ L    A          P+V  K  EE +   D    + +      ++   
Sbjct: 638 IQNKEVLQYIL--FHAINMDFERFVEPDVSKKIMEEYKLDNDPILDYYERIFKEYKSTRI 695

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
             + + + Y  + E     + K +  R+      +     G ++ K +   K
Sbjct: 696 PLYVVYEFYKYFCESN---NLKPVGDRSFYKRFGEILSEEGWEKGKHKLSGK 744


>gi|257870766|ref|ZP_05650419.1| DNA primase [Enterococcus gallinarum EG2]
 gi|257804930|gb|EEV33752.1| DNA primase [Enterococcus gallinarum EG2]
          Length = 477

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/418 (13%), Positives = 144/418 (34%), Gaps = 33/418 (7%)

Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439
           +     +     ++    +              + F+      +S       ++G  +++
Sbjct: 83  TDKLESFNKWSQQKLGETKKFIMIKIFDPTMKENPFN------NSKPYLANFKNGTYNIK 136

Query: 440 TGQKVKPTKELYITKSTGTPFVEGE--PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG 497
           TG+      + YI +S             ++ ++ +      E+   +    +G      
Sbjct: 137 TGELKPHDTKDYILQSHDYVVDPKSNLKPEKAIEWLRDLTGDEKSAQHLMEIIGYCFYRS 196

Query: 498 N-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
               Q    ++G G +GKST ++ +    G     N    ++   +   AG        L
Sbjct: 197 YAPFQTITILQGSGENGKSTFLDFLTKVIGKDNTSNMTLQELGNKQNRFAG------ANL 250

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
                 + ++ +     +   +K +TGGD ++A     + +             N+    
Sbjct: 251 FQKEANLFADVDSEFLKSTGLLKALTGGDRLSAEFKGKDHFM-FVNFAKLIFSANELPAF 309

Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLET----KYTLEAKKWFLKGVKAYISKGLD 672
            +    + RR  V+PFD  I   D SF  K +     K       + +   K  + +  +
Sbjct: 310 NDFTHGFERRLYVVPFDCVI---DESFKTKHDLNAIEKEIPLFATYCISMFKEALDRK-E 365

Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE--ESHSLAKSYSEYREQELNYDR 730
           + + +   +AK++  + ++    +I++ C I     E   S  + + Y ++  QE     
Sbjct: 366 LTVSDKMNQAKDKWLKESNHIMRFIEEKCSIDMESSEGDSSKKIYEEYQKFCYQE---SL 422

Query: 731 KRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFK 788
           + +S    +  L++ G +   +  +  + W+     + L L+  +  ++    +    
Sbjct: 423 RELSQPKFSKQLEKMGIVKVKQSVRGTRLWR----YRHLHLRNEYTPMESLEALASLD 476


>gi|168229313|ref|YP_001686834.1| orf40 [Streptococcus phage 858]
 gi|155241708|gb|ABT18028.1| orf40 [Streptococcus phage 858]
          Length = 514

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 127/331 (38%), Gaps = 22/331 (6%)

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSG 475
             +  +RF+  ++GI D +       T E     +  T +     S           +  
Sbjct: 152 EFEEHNRFILVKNGIYDKKERILKPFTHEFVAFSTIATSYNPLAESPTINGWDVDSWLLD 211

Query: 476 YF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
                ++++    + +  +L G    ++ I   G G  GK T+  LI    G + V   +
Sbjct: 212 LMNGDKDLVKLIWQVISASLNGNYSYRKSIWFVGEGNDGKGTVQQLITNLVGIKNVATLK 271

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNY 593
            +   +           SL  + G  ++I  +      ++  +    +  G+ +      
Sbjct: 272 LNQFSE---------RFSLSIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVLVEEKN 322

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
              Y+      T     N+    +N  +  +RR+++IPF K  ++++ ++A K +     
Sbjct: 323 KQPYTTV-FKKTVIQSTNELPRFKNKTNGTYRRFVIIPFKKSFSSKEDNWAIKEDYINRK 381

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
           E  ++ LK  KA        D P+  ++A E+ ++  DT ++++ +  D  E+    S  
Sbjct: 382 EVLEYVLK--KALEMSFTRFDEPKASIEALEDFKESNDTVKSFVVEWFDKFESTRLPSRF 439

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
           L   Y E+ ++E      +++ R     L +
Sbjct: 440 LWWLYQEWCKEEG---VTKLTKRKFENQLAK 467


>gi|293400042|ref|ZP_06644188.1| putative nucleoside triphosphatase, D5 family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306442|gb|EFE47685.1| putative nucleoside triphosphatase, D5 family [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 628

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/460 (14%), Positives = 155/460 (33%), Gaps = 53/460 (11%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
            +A+ K +F  +K G FL   D  A + K+  ++ +    L      +  + +       
Sbjct: 207 DEAFAKPVF--FKNGKFL--HDKFATFLKNNKHIILIDGNLHIYHDGVYEYDL------- 255

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
                        +  +         +  +            +   +         S   
Sbjct: 256 ------------REIEKVMVEQISSLKTSQRKEVLNHLLLICDEAEL---------SPPH 294

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYF 486
            +  ++GILD+ TG  +K ++ + +T      F     S+   DL+       +E+ +  
Sbjct: 295 LIPFRNGILDVLTGDLLKYSESIIVTNKIPWDFNINAYSELADDLMDRISCNDKEIRNIL 354

Query: 487 TRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
              +G      N     +   + G G +GKST +++I    GN  +   +  ++      
Sbjct: 355 EEVIGSCFYRSNTLAGGKSFILTGTGSNGKSTFISIINTILGNNNISAIDMKNLD----- 409

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
               A  S +RL      +  + +   + + +  K++  GD + A    G    E     
Sbjct: 410 ----AKFSTVRLYKKLANLGDDISGEFKSDTSTFKKIVTGDKVEAEEK-GQPKFEFNPYC 464

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE--AKKWFLKG 662
                 N+   +++   A  RR++++PF+   +  D  +  ++  K   +   + + L G
Sbjct: 465 KLIFSANEIPRMKDETGAAQRRFMIVPFNATFSENDDGYDPQIMWKLKNQQCIEYFILLG 524

Query: 663 VKAYIS--KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-LWEESHSLAKSYS 719
           +                   K  EE     +   ++I++C +  +  L E    +   Y 
Sbjct: 525 INGLKRVLTNKKFSSSTKVQKELEEYSIRNNPLLSFINECEETDQQILNEPVGDVYGKYQ 584

Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
            Y           ++    +  ++++  I  ++     K+
Sbjct: 585 GYCINNG---YVPLAKNEFSKRMQRQLDIKTVRHVIKGKK 621


>gi|218442311|ref|YP_002380637.1| primase P4 [Cyanothece sp. PCC 7424]
 gi|218175415|gb|ACK74144.1| primase P4 [Cyanothece sp. PCC 7424]
          Length = 1000

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 141/389 (36%), Gaps = 28/389 (7%)

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           S    +E     ++       +   L   D +L+L TG+  + +   ++T     P+   
Sbjct: 417 SYLNGIEELLRKALYIKEWPKAPNLLPFSDCVLELSTGKTREHSPNNWLTWVLPRPYNSL 476

Query: 464 EPSQ-EFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
           E S  +  + ++     +              L      Q+F+H+ G GGSGKST MNL+
Sbjct: 477 EKSWIKIDNWLTEATLGNATHKQILLCYAAAVLRRRADLQKFLHLIGTGGSGKSTFMNLL 536

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
               G Q  I+ + + + +            +    G  + I  + +   + N +  K++
Sbjct: 537 VALVGQQNTISLDFNSLNEKDA---------VAEAFGKVLAIFPDQDSAGK-NISNFKKI 586

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
           TG D +  R  Y + +          +  N  +F         RR +++PF+  + +   
Sbjct: 587 TGQDLLRGRRLYKDGF-NFRFEGLCAVSSNHPIFHSGSGRWLTRRVLMVPFELAVPDGKV 645

Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDD- 699
              +K           + L   ++ I   L  ++  +V        +  +D   +W++D 
Sbjct: 646 RNLEKEFEPELSAFTSYLLSIPESEIEATLKGLNKKQVVSSTLWSSQIRSDGLASWVNDE 705

Query: 700 -------CCDIGENLWEESHSLAKS-----YSEYREQELNYDRKRISTRTVTLNLKQKGF 747
                     IG N  E       +     +  Y        R+ ++    + NL +   
Sbjct: 706 IIFDSTARTQIGSNAKEWGEDDYDAASSTLFGSYCRHIRRSGRQPLTKDNFSANLIEL-L 764

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
            G +KR+  + +    R + G++L+ A +
Sbjct: 765 KGTLKRDVEKIKTNQGRFLTGVRLRTALD 793


>gi|254991956|ref|ZP_05274146.1| phage-related DNA primase/helicase, putative [Listeria
           monocytogenes FSL J2-064]
          Length = 780

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 97/776 (12%), Positives = 201/776 (25%), Gaps = 96/776 (12%)

Query: 20  LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74
            IP+               W +   +   ++K    G GF     + P +  DID     
Sbjct: 31  KIPMNANTGAYGNSVDERTWADFETALASLEKYHFDGLGFYF---KAPYFGVDIDDIKDD 87

Query: 75  ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
                   T N   +  + L       +      +I                  +G++++
Sbjct: 88  IQDYLYGNTENIAGEFIQTLASYTEYSVSGTGIHII-------AKGDFPEGGRRKGNIEM 140

Query: 129 LGCGQYFVAYNIHPKTKKE---------YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
              G++FV         ++         Y  T      +            +       E
Sbjct: 141 YPDGRFFVMTGQVIDNYRQVNEATSAIQYLHTKYIGTIENTSLTKHQNSSNDLSESEILE 200

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239
                          +          ++ ++    +     +    +D+       +   
Sbjct: 201 KAYNSQNGPYFKTLYEGNWEAYYASQSDADLA--FANMLAFWTAADYDK-------MDTI 251

Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP 299
            R S   ++   +                 +T+    +G      S   S          
Sbjct: 252 FRDSGLMRDKWDQ-------------KRGQNTYGQITLGKAISGCSEVYSPKQSGNSYNI 298

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT----ASI 355
                  ++   N+      +               K K    I      + +       
Sbjct: 299 NLKSRKNWAQLLNERRKKELE---------------KLKEEWLISGGKGKQPSVISPIGC 343

Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA---G 412
              L            E        +    W   +   +      +    A         
Sbjct: 344 AIILKEFFRFCLFNMNENTRLAMYLEEDGIWTQNETYIRRFIGFLEPTLNANKASDVIYH 403

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF--- 469
                       S   +  ++G+ +L+T +    T +   T    TP+V   P Q     
Sbjct: 404 LWKGAEVKEKTVSKYLIPVKNGVFNLKTKKLEAFTPDYVFTSKIATPYVANPPKQNINGW 463

Query: 470 --LDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
                +       E++     + +  +L G    +  I + G G +GK T   L++   G
Sbjct: 464 DVHTWLDEIACGDEQITSLLWQVISASLNGNYSRKSSIWLLGDGNNGKGTFQQLLRNLIG 523

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGD 585
           N  +   +     +           SL  L      I  +      I+  +    +  GD
Sbjct: 524 NSNIATLKLPQFQE---------RFSLSILEEKVCCIGDDVPAGVYIDDSSNFNSVVTGD 574

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
            +       + YS      T     N    +RN  D  +RR+I++PF   +     ++  
Sbjct: 575 EIMVEQKNKHPYSA-NFHMTVIQSTNGMPKMRNKTDGTYRRFIIVPFKANLKGGKDNWKI 633

Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
           K E     E  ++ L    A          P+V  K  EE +   D    + +      +
Sbjct: 634 KDEYIQNKEVLQYIL--FHAINMDFERFVEPDVSKKIMEEYKLDNDPILDYYERIFKEYK 691

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
           +     + + + Y  + E     + K +  R+      +     G ++ K +   K
Sbjct: 692 STRIPLYVVYEFYKYFCESN---NLKPVGDRSFYKRFGEILSEEGWEKGKHKLSGK 744


>gi|307317147|ref|ZP_07596588.1| Primase 2 [Sinorhizobium meliloti AK83]
 gi|306897235|gb|EFN27980.1| Primase 2 [Sinorhizobium meliloti AK83]
          Length = 806

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 118/801 (14%), Positives = 231/801 (28%), Gaps = 93/801 (11%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKIDKLPAC--GFGFVCGVGE-- 62
           +Q ++    GF +  L    KRP     W  +  L+ E++ K        G   G     
Sbjct: 3   DQIERLARAGFAIHWLHPKQKRPIG-ENWSTKPVLTLEQLKKTYKDGNNVGVRLGKWSKI 61

Query: 63  --QPLYAFDIDSKDEKTANTFKDTFEILHG----TPIVRIGQKPKILIPFRMNKEGIKKK 116
               L+  D+D +D K A+  +     L       P V  G   +    + ++ +    K
Sbjct: 62  GNDYLHVIDLDIRDPKLADEARQKLTELFPVWKTYPTVISGSGGESRHFYILSDKPFSPK 121

Query: 117 K------------TTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTP 163
           K                 +  +D+ G G+        HP T K Y W TP     + D  
Sbjct: 122 KLAHSREKIQTADGKWHWRWEIDLFGTGKQVAMPPSIHPDTGKPYRWQTPFDFDDL-DLG 180

Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
           L      + L K                              +  EI   L     +++ 
Sbjct: 181 LGPMVGSDVLAKMLDMDADDERAAADPERS-------KPLGLSLDEIREVLDDLPRDYWR 233

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
              D W+ V M++HHET GS  G ++   +SK    +D+ +    W +F   +      +
Sbjct: 234 DDRDGWLTVGMSLHHETGGSDHGYKLWLDFSKDSEKFDKSDQKRVWKSF---KGSQKPVR 290

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
            +T  +             L    +D  +                      KK K +   
Sbjct: 291 MATLVTAAREARLDEEFENLDDDVTDDLDAPEQDTEFDDILGTEHGDTKRAKKLKKSETE 350

Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
             L                ++                      + T     N  EN +  
Sbjct: 351 ADLGH-----VPPKVRRMNRKHAVAFVNGKTVIVTEHMDGTTAYGTPNELHNWYENDRVA 405

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           +   +          S             +GI+    GQ+       +  K         
Sbjct: 406 TEKAT-------EPVSKAWMRHKLRRQYPNGIV-FAPGQERDGYFNHW--KGFAVEPDSE 455

Query: 464 EPSQEFLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNL 520
              +  LD +       +EE   Y        +     K    + +RG    GK T+ + 
Sbjct: 456 GSCRLILDHLKNVICSGNEEYYRYALGWFAHMIQRPFEKPGVAMVLRGKKRIGKDTIADY 515

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           I   F + +V+ A    ++        K    L+ +              ++     +K 
Sbjct: 516 IGGLFPHHHVVIANQEQLVGKFNAHQEKC--LLLHVQEGFWA-------GNKNAEGSLKY 566

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIPFDKPIANR 639
           +   + +       N +    +    F+  N+   V    D+    RY V+  D     +
Sbjct: 567 LITSEKVFIEPKGLNGFH-VDSYLRLFMSSNEDWVVPATADEG---RYFVL--DVSPHRK 620

Query: 640 DASFAQKLETKYTL-EAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWI 697
           D     +          +   L  ++ Y     +V  +P+    A+++ +   +    W 
Sbjct: 621 DDHGYFRAIRNERDHGGQAALLHYLQNYDLSDFEVRKVPDTTALAQQKVQGLKN-IDKWW 679

Query: 698 DDCCDIGENLW-------------------EESHSLAKSYSEYREQELNYDRKRISTRTV 738
            D  + GE  +                    +     ++YSE+  ++  Y+ + +    +
Sbjct: 680 FDMLESGELEFPCYSIKGGNAGQWLTEPVMVDRDEFRQAYSEWMRRQ-RYNGEELVKFMI 738

Query: 739 TLNLKQKGFIGGIKREKIEKE 759
              +++       +R +   +
Sbjct: 739 GKRMREILPQIEDRRRREGAK 759


>gi|144898907|emb|CAM75771.1| primase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 757

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 64/298 (21%), Positives = 113/298 (37%), Gaps = 30/298 (10%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGK--------WE---EQLLS---SEKIDKLPAC 52
                + + NG+  IP+  G K+P R           W    ++  +    E     P  
Sbjct: 9   ARFGARLVDNGYPAIPIWPGSKKPGRFQAGAWCDYPAWTRHCDRPTTLIEVETWATWPDA 68

Query: 53  GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKE 111
             G  CG     L   DID  D   A+  +     + G TP++RIG+ PK L+ +R +  
Sbjct: 69  AIGLACGT----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYRADVP 124

Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVEDTPLLSEEDV 170
               K+        L+IL  G+ FVA+ IHP T + Y W    P    ++D P+++E+ V
Sbjct: 125 FSGPKRAP------LEILAHGRQFVAFAIHPDTGQPYVWPEDSPLTVALDDLPVVTEDSV 178

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
               +    +    ++      P+ +  + + ++ T   + + L+       +  +D W+
Sbjct: 179 RAWLEAAIALLPTELRPATLESPAASMPSTSPQRGTLAAVRSALAHI--PNADLDYDSWV 236

Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
            + MAV        +G  +   WS   +          W +F    IG          
Sbjct: 237 RIGMAVKGAI--GEEGASLFAAWSAMSAKDVPATTANAWASFRPTTIGAGTIYHFAME 292


>gi|307591546|ref|YP_003900345.1| primase P4 [Cyanothece sp. PCC 7822]
 gi|306986400|gb|ADN18279.1| primase P4 [Cyanothece sp. PCC 7822]
          Length = 1012

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 95/652 (14%), Positives = 198/652 (30%), Gaps = 51/652 (7%)

Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
            P     + +++    Q+       ++     +  W        T  E    L       
Sbjct: 153 LPYHQNAEGQWINAKGQQGWPAYRIEEAITYSTNKWVLGV-EGETCVEAARSLMLVSNTM 211

Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIA----RRWSKQGSTYDEENFNYKWDTFDFEEI 277
             G   E + +   +         G            ++       +   K+     + +
Sbjct: 212 QGGCWGE-VDLGTWLTQLKNNGVTGLVYWPDNDDDGQRKAQKLLAASGKVKFPVLILKPL 270

Query: 278 GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS--IYKKGHFLYTADTKAWYK 335
              A    T   +       + +G+    F      A+    + +        +T     
Sbjct: 271 EIWADIPET-GDIADWVKWGLTQGMTGDEFIKRLELAIHEAVLSRHESPPVEENTPTQQT 329

Query: 336 KDKNNVYIWSLTLDKITASIM---NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
                  I S+  ++              M+     +         N       ++    
Sbjct: 330 ALPKQNRIASVIAERYLNKFRYNNEANTWMEYQDEAIKGGAWIAVSNLHIQTQIYHILQA 389

Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
           R     +S   S  + L               +   L   D +LDL TG+ ++ +   Y+
Sbjct: 390 RNYEFNSSYLNSIEELLRKALYI----KEWPKTPNLLPFSDCVLDLYTGKTIEHSPNNYL 445

Query: 453 TKSTGTPFV-EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
           T     P+    +   E  + ++     +              L      Q+F+H+ G G
Sbjct: 446 TWVLPRPYNVPLQSWTEIDNWLTEATRSNAAHKQILLCYAAAVLRRRADLQKFLHLIGTG 505

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
           GSGKST MNL+    G Q  I+ + + + +            +    G  + I  + +  
Sbjct: 506 GSGKSTFMNLLVALVGQQNTISLDFTSLNEKDA---------VAEAFGKVLAIFPDQDSA 556

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
            + N +  K++TG D +  R  Y + +          +  N  +F         RR +++
Sbjct: 557 GK-NISNFKKITGQDLLRGRRLYKDGF-NFRFEGMCAVSSNNPIFHSGSGRWLTRRVLMV 614

Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQG 689
           PF+  + +      +K           + L   +  I   L  ++  +V  K   E +  
Sbjct: 615 PFELAVPDGKVRNLEKEFEPELSAFTHYLLSIPETQIEATLKGLNKKQVISKTLWESQIR 674

Query: 690 TDTYQAWIDD--------CCDIGENLWEESHSLA-----KSYSEYREQELNYDRKRISTR 736
           +D   +W++D           IG N  E  +          +  Y        R+ ++  
Sbjct: 675 SDGLASWLNDEIVFEVTARTQIGSNAREWDNLDYDPTTSTLFGSYCHHIKRSGRQPLTKD 734

Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK-------PAFESVDDN 781
             + NL +    G +KR+  + +    R I G++L+       P  + + +N
Sbjct: 735 NFSANLIEL-LKGTLKRDVEKVKTNQGRFITGVRLRTLHDFEIPCLDELLEN 785


>gi|323144216|ref|ZP_08078849.1| phage/plasmid primase, P4 family, C-terminal domain [Succinatimonas
           hippei YIT 12066]
 gi|322416008|gb|EFY06709.1| phage/plasmid primase, P4 family, C-terminal domain [Succinatimonas
           hippei YIT 12066]
          Length = 633

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 106/327 (32%), Gaps = 15/327 (4%)

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
           K+    +EA     I  +   +  R++G ++GI DLE  + +     + IT      ++ 
Sbjct: 277 KNIRNEVEAFINDFIIENATVADPRYIGFKNGIYDLEERKLISFDPNIVITNPINHNYIS 336

Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
                +    +S      + +       +G  L   N  Q+F  + G G +GKS     I
Sbjct: 337 DAYDADTDKFLSNITCGDKALRANLEELLGYCLYRENSLQKFFLLYGSGSNGKSMFCTFI 396

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
           +   G +   +     + +     +         +      I  + +     + A +K +
Sbjct: 397 RAVLGEENCSSESLQRLGERFGSSS---------IYNKLANICDDNSSMHIKDPAMLKIL 447

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
           + G          +++S            NK   + +   A  RR ++IPF++ I   + 
Sbjct: 448 SSGGNYQTEFKGKDSFS-YTPFCKLIFCMNKLPKINDNGQAVQRRLVIIPFNRSIPENEQ 506

Query: 642 SFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
             A K +       +   +  ++G+   +         E   +         +    ++ 
Sbjct: 507 DTALKKKLTKDSAIEYGIRIAIEGLNRLLENN-KFTESEKIDQQLNNYLGYNNPIADFVK 565

Query: 699 DCCDIGENLWEESHSLAKSYSEYREQE 725
               I   L      +   Y  Y E+ 
Sbjct: 566 KKGGIEYLLSNYCGDIYSEYQRYCEEN 592


>gi|49237319|ref|YP_031600.1| putative D5 family NTPase/ATPase [Frog virus 3]
 gi|47060137|gb|AAT09681.1| putative D5 family NTPase/ATPase [Frog virus 3]
          Length = 973

 Score =  193 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 111/301 (36%), Gaps = 22/301 (7%)

Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               P  + L   +  F  E    +F R      +GGN  +  +   G G +GK+    L
Sbjct: 655 DFKGPVTKLLAFFASVFPDEGTRRFFLRNAAATFVGGNPDKVVLFWTGTGNNGKTVTQTL 714

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIK 579
            +   G   V  +  +     R P AG ANP + RL  G R  ++ E N ++ INA  +K
Sbjct: 715 FEKMLGCFAVKMSTQTLT--GRKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGTLK 772

Query: 580 QMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
            MTG D   AR  Y  G T  E    F   ++ N    +++ D A W R  V+PF+    
Sbjct: 773 SMTGNDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFESTFV 832

Query: 638 NR--------------DASFAQKLETKYTLEAKKWFLKGVKA-YISKGLDVDIPEVCLKA 682
                           D    +KL+         W+L    A   ++ +    P   ++A
Sbjct: 833 TPGTTAPADAKYVFPADTDITRKLDRLTAP--LAWYLVYCWACIQNERVKYVPPPKVMEA 890

Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
               ++  D ++ ++++      +          ++ ++      +   R     V   L
Sbjct: 891 TMAYQKEHDLFRQFVEEMLRKDPDSTLTCDDAYTAFRDWTSANSPHGTVRRPKGQVVKCL 950

Query: 743 K 743
           +
Sbjct: 951 E 951



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 99/333 (29%), Gaps = 44/333 (13%)

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
              +  +   L   ++      T     +R     ++TA L+    +        W+ V 
Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDATKAHRLKRVTDLTAMLTADLAD----DRQTWLNVG 327

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTF 287
             +  +T GS++G ++   +SK+    DE+     W      ++F    +   A+K +  
Sbjct: 328 FCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPG 387

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI---W 344
             L +   K  P   + +    A  K M+  Y          T+ WY+ D          
Sbjct: 388 AYLNWLQVKSTPVNDIGTNV--AMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQG 445

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEP---------EDNNKNSKSPR----------- 384
           +     I+A        +   +  ++            ED+ ++S +             
Sbjct: 446 TDLRSLISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDDEEDSATDEDDSNPWDSELR 505

Query: 385 ---------FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
                             + +E      +  +            D++DS        +GI
Sbjct: 506 RLDSEVLDTMVKRLRNNLKGIEMTGVKNNVLRECAELFYQPEFGDVIDSDPLLFAFANGI 565

Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
            D   G       E  +++     FV   P  +
Sbjct: 566 YDFREGCLRDGRPEDKLSRRAPVDFVMFGPIPK 598


>gi|313683547|ref|YP_004061285.1| phage/plasmid primase, p4 family [Sulfuricurvum kujiense DSM 16994]
 gi|313156407|gb|ADR35085.1| phage/plasmid primase, P4 family [Sulfuricurvum kujiense DSM 16994]
          Length = 463

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 30/414 (7%)

Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
           ++ + +   F      +    +     K  +             +  +     +  Q+G+
Sbjct: 59  SDVHQEQSFFLKKIIEKLTGGKIPVSMKFISSVYIELLNEYFIPEETEGYLALINVQNGL 118

Query: 436 LDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493
           L +        +    L         ++    +  F   ++   + E  +      +G  
Sbjct: 119 LGISKDDIELYEADPSLGYRYVLSYEYIPEAKAPIFEKFLAETVQDENSIKVIYEYMGYI 178

Query: 494 LLGGNKAQRFIHIR-GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
           LLG + +     +  G G +GKS L+  +    G     N E  ++              
Sbjct: 179 LLGKHLSLEAALLLLGDGRNGKSVLIKTLMKFVGEDNTSNVELQELSNPNRT-------- 230

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
            + + G  + + S++++ +  ++++ K+    + +T R  Y + Y             N 
Sbjct: 231 -VTMDGKLLNVGSDSSDKN-FDSSQFKRAISNEPITGRRLYHDAYV-IKDLPKFVFAMNN 287

Query: 613 HL-FVRNPDDAWWRRYIVIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
                 +      RR  +I FDK IA  +   +  K   K         ++G++  I +G
Sbjct: 288 LPLSQGDTSFGLLRRLKIIKFDKIIAEHEIDRYLDKKIEKELSGILNLAIEGLRRLIKQG 347

Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYD 729
                 +   KA +      +  + +I+D      E  +  +  L +++ E+ + E    
Sbjct: 348 -GFTESDAINKAVKSYEDEINMVKRFIEDVSIAHSEKGYMSNQQLYETFVEWCKDEG--- 403

Query: 730 RKRISTRTVTLNLKQKGFIG---------GIKREKIEKEWKSKRIIKGLKLKPA 774
            K  S   +   L+  GF            +   K+    K +    G +L+  
Sbjct: 404 IKVPSKSFLLKKLRSSGFAPYKNNAVKGFRVTVTKMTLSPKDESRYAGKRLRSK 457


>gi|256818700|ref|YP_003135767.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802]
 gi|256592440|gb|ACV03310.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802]
          Length = 1172

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/581 (14%), Positives = 185/581 (31%), Gaps = 77/581 (13%)

Query: 235 AVHHETRGSS--KGKEIARRWSKQGSTYDEENFNYKW-----DTFDFEEIGDTAKKRSTF 287
           A H     ++  K  E A  WS+      E +    +           +     ++  T 
Sbjct: 376 ATHGTDSDAAIKKVLEEAIAWSRLIPKEQESDLKAFYWVEIQQAIGSTDTSQFVEQLQTI 435

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
            +          +G+   + S+       +   +    +    + WY+ +     IWS  
Sbjct: 436 KT-----QASPVEGIPNWKASEL--AEYIAYRHQSTLAWNTQIEQWYRYEGKEKGIWS-- 486

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
                          K  ++ L +E        +          R +N  +   + +   
Sbjct: 487 ------------KDDKYYIWQLIQE--------ELKAIALIHQQRDKNGNKPGFSHNLVA 526

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
           S+E     S+     DS    L  ++G+L+L+T +  +   +  +T      +       
Sbjct: 527 SIENLLKGSLPVRQWDSIEGLLPLKNGVLNLKTQEFHQHDPKYCLTYCLPYEYNPLATCH 586

Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
             LD ++        ++++F   +   + G +  Q ++ + G GG+GK TL  L     G
Sbjct: 587 PILDWLNQMTGGDRIMVEFFRAHLAAIVRGRSDIQSYLELLGPGGTGKGTLTRLATALVG 646

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
           +Q  ++    ++ +NR            R+ G+++V+I++  +      + +K +TG D 
Sbjct: 647 DQNTVSTTLKNLEENR--------FDTARIFGAKLVVITDAEKFGG-EVSVLKALTGEDK 697

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDASFAQ 645
           +     Y        A     I  N+     +      RR         I   +  +   
Sbjct: 698 LRFEQKYKQPLDGFYAQSRVIICANEAPQSSDYTSGLARRRQTTYLTNKIPIEKQRNLIS 757

Query: 646 K-------LETKYTLEAKKWFL----KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
                      +Y      W L    + ++  I + +    P    + K +    T+   
Sbjct: 758 INGKGVTGEFAQYLPGLLNWVLAMPPEELERAIRE-IPTTHP-SFTQHKAQVLCETNPIA 815

Query: 695 AWIDDCCDIGENLWE-----------ESHSLAK-----SYSEYREQELNYDRKRISTRTV 738
            W+D      E                S +L +      Y+ Y E   +   + +S R  
Sbjct: 816 DWLDQAVVYREGWRTNVGMAKRDKDSSSPNLFQCVNQWLYANYAEFCQSSGARPVSLRRF 875

Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
              L+    +  +     +   +     +GLKL+   ++  
Sbjct: 876 VNLLRDL-AVNQLGLMVKKGRDRLGAFFEGLKLRSEMDNDP 915


>gi|218203882|ref|YP_002364737.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801]
 gi|218169669|gb|ACK68405.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801]
          Length = 1172

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/581 (14%), Positives = 186/581 (32%), Gaps = 77/581 (13%)

Query: 235 AVHHETRGSS--KGKEIARRWSKQGSTYDEENFNYKW-----DTFDFEEIGDTAKKRSTF 287
           A H     ++  K  E A  WS+      E +    +           +     ++  T 
Sbjct: 376 ATHGTDSDAAIKKVLEEAIAWSRLIPKEQESDLKAFYWVEIQQAIGSTDTSQFVEQLQTI 435

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
            +        + +G+   + S+       +   +    +    + WY+ +     IWS  
Sbjct: 436 KT-----QASLVEGIPNWKASEL--AEYIAYRHQSTLAWNTQIEQWYRYEGKEKGIWS-- 486

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
                          K  ++ L +E        +          R +N  +   + +   
Sbjct: 487 ------------KDDKYYIWQLIQE--------ELKAIALIHQQRDKNGNKPGFSHNLVA 526

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
           S+E     S+     DS    L  ++G+L+L+T +  +   +  +T      +       
Sbjct: 527 SIENLLKGSLPVRQWDSIEGLLPLKNGVLNLKTQEFHQHDPKYCLTYCLPYEYNPLATCH 586

Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
             LD ++        ++++F   +   + G +  Q ++ + G GG+GK TL  L     G
Sbjct: 587 PILDWLNQMTGGDRIMVEFFRAHLAAIVRGRSDIQSYLELLGPGGTGKGTLTRLATALVG 646

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
           +Q  ++    ++ +NR            R+ G+++V+I++  +      + +K +TG D 
Sbjct: 647 DQNTVSTTLKNLEENR--------FDTARIFGAKLVVITDAEKFGG-EVSVLKALTGEDK 697

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDASFAQ 645
           +     Y        A     I  N+     +      RR         I   +  +   
Sbjct: 698 LRFEQKYKQPLDGFYAQSRVIICANEAPQSSDYTSGLARRRQTTYLTNKIPIEKQRNLIS 757

Query: 646 K-------LETKYTLEAKKWFL----KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
                      +Y      W L    + ++  I + +    P    + K +    T+   
Sbjct: 758 INGKGVTGEFAQYLPGLLNWVLAMPPEELERAIRE-IPTTHP-SFTQHKAQVLCETNPIA 815

Query: 695 AWIDDCCDIGENLWE-----------ESHSLAK-----SYSEYREQELNYDRKRISTRTV 738
            W+D      E                S +L +      Y+ Y E   +   + +S R  
Sbjct: 816 DWLDQAVVYREGWRTNVGMAKRDKDSSSPNLFQCVNQWLYANYAEFCQSSGARPVSLRRF 875

Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
              L+    +  +     +   +     +GLKL+   ++  
Sbjct: 876 VNLLRDL-AVNQLGLMVKKGRDRLGAFFEGLKLRSEMDNDP 915


>gi|313633608|gb|EFS00380.1| gp60 [Listeria seeligeri FSL N1-067]
          Length = 217

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 9/192 (4%)

Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
            + RL G+R V  +E NE   ++   +KQ+TGGD +TAR  Y + + E    F  ++  N
Sbjct: 1   DIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF-EFTPEFKIWMATN 59

Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISK 669
               +R  DD  WRR  ++PF   I +   D     KL          W ++G   +  +
Sbjct: 60  HKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGILNWAVEGFLKWQRE 118

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           GL   +P+V   A  E +   D   A+I+DCCD+ E     +  + ++Y ++ ++   Y 
Sbjct: 119 GLG--MPKVVENASSEYKXXXDVITAFIEDCCDVREGEKVNAKKMYETYRDWAKENGQY- 175

Query: 730 RKRISTRTVTLN 741
              +S+      
Sbjct: 176 --LMSSTKFGKE 185


>gi|154503078|ref|ZP_02040138.1| hypothetical protein RUMGNA_00901 [Ruminococcus gnavus ATCC 29149]
 gi|153796319|gb|EDN78739.1| hypothetical protein RUMGNA_00901 [Ruminococcus gnavus ATCC 29149]
          Length = 601

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/551 (12%), Positives = 172/551 (31%), Gaps = 36/551 (6%)

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
              + I    + Q + +       KW      E    A          +   + + K   
Sbjct: 62  EDMRSIQFHGTCQSAYHYVAACTTKWMNDRILEFCKEAGLDGKAGWQLFKEKEYLGKLDN 121

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
                 A  + +    +        +   ++K D          ++ +   + N    ++
Sbjct: 122 QPEVGKALEQFILRFER--ETKNDPELSRFHKFDSKGKVTGVRDMEIVDYIVENVSFFVR 179

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
            ++    E              +       ++   +S  +     L         S  L+
Sbjct: 180 GEIPYYYEHGVFIEDAKGVKLKYRIQKLIYRDRVNSSTIQRVYNLLITQPQIYRNSYELN 239

Query: 424 SSS-RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY 476
                ++  ++   D+ +G+ ++   +         P+   +  +           +   
Sbjct: 240 KQPAHWINFRNAYYDVLSGELIEHDPKYLTINQIPFPYYPEDREKVLEGGANIRKYLDSS 299

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
              +     F    G  +    + Q+F+ ++G GG+GKS  + LI++  GN+   +    
Sbjct: 300 IPDKIEQQMFWEYFGYCMTTDTQFQKFLMLKGNGGTGKSVAVALIQHVIGNENTSSISLQ 359

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
           D+ +               + G  +   ++           +K+  G D +       + 
Sbjct: 360 DLNKRFYATG---------MYGKLLNACADIPCKAMDTTDVLKKAVGEDTLLYEKKGKDA 410

Query: 597 YSESPASFTPFIVPNKHLF-VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653
                A        N+    + +  DA++RR +V+  ++ I    RD    +K+      
Sbjct: 411 VF-YKAYAKLLFSTNEMPQNLEDKSDAFYRRLLVLDMNQMIPGEERDIRLKEKI-KAEAD 468

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
            A    +  +K    +G ++   E   +   E R+ +D+  A++D+     E    +   
Sbjct: 469 YAIHMAVIALKDVYERG-ELIESEHSKECVRELRRASDSVCAFLDEKLVQAEGKRMKRSE 527

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
           + + Y EY +     DR+         +++ KG+          +++  +     + ++ 
Sbjct: 528 VYRMYEEYCKDN---DRQGHGKSGFFKSMEGKGYQV--------RKYNGEYCYLDIAIRE 576

Query: 774 A-FESVDDNSN 783
             F  ++    
Sbjct: 577 EDFHPLEAGEK 587


>gi|225734507|gb|ACO25275.1| D5 family NTPase [Epizootic haematopoietic necrosis virus]
          Length = 973

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 111/303 (36%), Gaps = 22/303 (7%)

Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
           P     P  + L   +  F  E    +F R      +GGN  +  +   G G +GK+   
Sbjct: 653 PKDFKGPMAKLLAFFASVFPDEGTRRFFLRNAAATFVGGNPDKVVLFWTGTGNNGKTVTQ 712

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAK 577
            L +   G   V  +  +     R P AG ANP + RL  G R  ++ E N ++ INA  
Sbjct: 713 TLFEKMLGCFAVKMSTQTLT--GRKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGT 770

Query: 578 IKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           +K MTG D   AR  Y  G T  E    F   ++ N    +++ D A W R  V+PF+  
Sbjct: 771 LKSMTGNDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFEST 830

Query: 636 IANR--------------DASFAQKLETKYTLEAKKWFLKGVKA-YISKGLDVDIPEVCL 680
                             D    +KL+         W+L    A   ++ +    P   +
Sbjct: 831 FVTPGTTAPADAKYVFPADTDITRKLDRLTAP--LAWYLVYCWACIQNERVKYVPPPKVM 888

Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
           +A    ++  D ++ + ++      +          ++ ++      +   R     V  
Sbjct: 889 EATMAYQKEHDLFRQFTEEMLRKDPDSTLTCDDAYTAFRDWTSANSPHGTVRRPKGQVVK 948

Query: 741 NLK 743
            L+
Sbjct: 949 CLE 951



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 100/333 (30%), Gaps = 44/333 (13%)

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
              +  +   L   ++      T     +R     E+T  L+    +        W+ V 
Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDATEAHRLKRVTELTVMLTADLAD----DRQTWLNVG 327

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTF 287
             +  +T GS++G ++   +SK+    DE+     W      ++F    +   A+K +  
Sbjct: 328 FCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPG 387

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI---W 344
             L +   K  P   + +    A  K M+  Y          T+ WY+ D          
Sbjct: 388 AYLNWLQVKSTPVNDIGTNV--AMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQG 445

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLS-------------EEPEDNNKNSKSPRFWFNTDY 391
           +     I+A        +   +  ++             ++ ED+  +      W +   
Sbjct: 446 TDLRSLISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDDEEDSATDEDDSNPWDSELR 505

Query: 392 R----------------RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
           R                 + +E      +  +            D++DS        +G+
Sbjct: 506 RLDSEVLDAMVKRLRNNLKGIEMTGVKNNVLRECTELFYQPEFGDVIDSDPLLFAFANGV 565

Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
            D   G       E  +++     FV   P  +
Sbjct: 566 YDFREGCLRDGRPEDKLSRRAPVDFVMFGPIPK 598


>gi|125625287|ref|YP_001033770.1| hypothetical protein llmg_2534 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124494095|emb|CAL99096.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300072099|gb|ADJ61499.1| hypothetical protein LLNZ_13090 [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 542

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 117/336 (34%), Gaps = 21/336 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF-ESE 480
             +   +GI + +T Q    + +   T +  T +     +         D ++      +
Sbjct: 178 HLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNAKAKAPNINGWNIDDWLNDLMSGDK 237

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           E++    + +  +  G    ++ I + G G  GK T  +LI    G + V + +A    +
Sbjct: 238 ELVKLLWQVISASTNGNYSYRKGIWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFSE 297

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
                      +L +++G   VI  ++  +   NA     +  GD +             
Sbjct: 298 ---------RFALSQVVGKTCVIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAV 348

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
             +       N     RN  +  +RR +++PF+K     + ++  K +     +  ++ L
Sbjct: 349 -FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDNWKIKDDYIKRKDVLEYVL 407

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
           K   +        D P+      ++ +   D   A+++D  +   + +  +  L+  Y  
Sbjct: 408 KIALSL--NFDKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTTFLSALYRA 465

Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
           + E E     K  + R     L        IK  + 
Sbjct: 466 WCEDEG---VKPFTKREFENKLPDHIKEKWIKTTQR 498


>gi|237720962|ref|ZP_04551443.1| phage/plasmid primase P4 [Bacteroides sp. 2_2_4]
 gi|229449797|gb|EEO55588.1| phage/plasmid primase P4 [Bacteroides sp. 2_2_4]
          Length = 524

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 119/364 (32%), Gaps = 33/364 (9%)

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
           +    L   +  +   + + D+   +     +    T      +   E    +   +   
Sbjct: 85  VAGKALKPDNAIVVFNNCVFDMNARRAHSFNRRWVQTTCVPYDYKPEEHVFLWRMFLDEV 144

Query: 477 FESEEVMDYFTRCVGMALLGGN--KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
              + +       +G   +     K +  + +RG G +GKS +   I    G + V N  
Sbjct: 145 LPDKNMQKVLQEFLGSIFVDRRVAKMETMLVLRGSGSNGKSVVFETIMGILGRENVSN-- 202

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-EINAAKIKQMTGGDCMTARLNY 593
                        +   ++  + G R+   SE    +   ++  +K +  G+   AR  Y
Sbjct: 203 ---FGIGALITGNERKKNIAFINGKRLNYCSEIQALEFGKDSDTLKSLISGEPTEARPIY 259

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKY 651
           G+ ++            N+  ++++      RR  +IPF+  I    +    ++ LE   
Sbjct: 260 GDNFTAYNIP-LLMANANQMPYLKDWSYGMRRRICIIPFEVEIPKARQKKELSRDLE-AE 317

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI---------DDCCD 702
                 W L+G   +I+ G  +   +      +E +  + T   ++         ++  D
Sbjct: 318 YPAIFNWILEGRDRFIANGYKLTDSKELENVMDEYQSESSTVMKFMYQMNYLCRYEEIAD 377

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
           I    W  S  L + Y ++ +     +            L + G+         +K   +
Sbjct: 378 IEPK-WMSSAILYRKYCKWCKDNNTKEENV---TVFGRILSEAGY--------RKKRTPN 425

Query: 763 KRII 766
            ++ 
Sbjct: 426 GQVY 429


>gi|77463706|ref|YP_353210.1| hypothetical protein RSP_0135 [Rhodobacter sphaeroides 2.4.1]
 gi|77388124|gb|ABA79309.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 479

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 106/345 (30%), Gaps = 30/345 (8%)

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332
             E +     +                +  +    ++      F+    G   +  D   
Sbjct: 17  GPEGVRAQFDQMEDIPPPRPRQPPPAQEDPVEIEVTEDGVARAFTEKYGGTLRFDHDAGR 76

Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
           WY         W     +   +   F    +      SE  + +  ++     +     R
Sbjct: 77  WY--------HWQEDHWQADTTSRAFEYC-RRLARLASEGAKHSLLSTARKASFAGGVER 127

Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
                             A    ++T +  D     +      +DL TG+   P  E  I
Sbjct: 128 LAR---------------ADPAHAVTQEAWDRDPWLVACPGETVDLRTGRSAVPRPEDGI 172

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
           T+         E    +   +         VM +  +  G +L G  +    + + G GG
Sbjct: 173 TRRVAVAPAAQETCPTWWQFLEDATGADSSVMRFLQQWAGYSLTGITREHTLVFLYGDGG 232

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           +GKS  +N +    G+        +         + +    L  L G+R+V  SET E  
Sbjct: 233 NGKSVFINTLTGLLGDYAATAGMETFTASK----SDRHPTDLAMLAGARLVAASETEEGR 288

Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
               ++IKQMTGGD +TAR    + +      F   +V N    +
Sbjct: 289 AWAESRIKQMTGGDRITARFMRRD-FFTYTPQFKLTLVGNHRPAL 332


>gi|56692689|ref|YP_164147.1| D5 family NTPase [Singapore grouper iridovirus]
 gi|42517401|gb|AAS18067.1| D5 family NTPase [Singapore grouper iridovirus]
          Length = 968

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 120/345 (34%), Gaps = 34/345 (9%)

Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
             +        +  P     P    L   S  F  E    +F R      +GGN  +  +
Sbjct: 635 PWSPTGENCVFSCDPKDFSGPVARLLTFFSTVFPDEGTRRFFLRNAAQTFIGGNPDKVCL 694

Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVI 563
              G G +GK+    L +   G   V  +  +     R P AG ANP L RL  G R  +
Sbjct: 695 FWTGTGNNGKTVTQTLFEKMLGCFAVKMSTQTLT--GRKPSAGAANPELARLGCGVRWAV 752

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDD 621
           + E N ++ INA  +K MTG D   AR  Y  G T  E    F   ++ N    +++ D 
Sbjct: 753 MEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTHEIKPLFKLHVICNTLPAIKDADQ 812

Query: 622 AWWRRYIVIPFDKPIANR--------------DASFAQKLETKYTLEAKKWFLKGVKA-Y 666
           A W R  V+PF+                    D   ++KL+         W+L    +  
Sbjct: 813 ATWNRVRVVPFEATFVTPGTKAPADAKYKFPADTDISRKLDRLTAP--LAWYLVYCWSCM 870

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
            ++ +    P   ++A  E ++  D ++ + D+                 ++ E+     
Sbjct: 871 QNETVKYVPPAKVMEATMEYQKEHDLFRQFYDEKLHQNPTACLSCDEAYAAFREWATLNC 930

Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
            +   R S   +   L+                 K     +G++L
Sbjct: 931 PHSFARRSKTQIVKCLE------------TILGKKGPTGWQGIEL 963



 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/381 (13%), Positives = 109/381 (28%), Gaps = 61/381 (16%)

Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
           +  +  +IHP  +++Y                L+          +  +   L   ++   
Sbjct: 226 REAMILSIHPVERQKYFRRYDFTANNPGALLRLT---------KYSAVRAKLDMVRQRKT 276

Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252
             KT     ++    RE+T  L+    +        W+ V   +  +T+GS +G +I   
Sbjct: 277 CWKTDLTEFHKLKRFRELTGMLTGDIAD----DRQSWLHVGFCLWQQTQGSLEGYKIWLN 332

Query: 253 WSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
           +SK+    DE+     W      ++F    +    +K +    L +   K  P   + + 
Sbjct: 333 FSKKSEKCDEDECWRIWNNQMRPNSFTEGTLVYMVQKHNPAAYLNWLQTKSTPVKDMGTN 392

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT------ASIMNFLV 360
              A  K M+  Y        A  + WY+ D       +  +D  +        +   L 
Sbjct: 393 V--AMAKIMWDYYGHEFVCCGAKNQIWYRFDGLTWVESNQGIDLRSLISADGGPLKRLLT 450

Query: 361 SMKEDVFDLSEEP------------------------------EDNNKNSKSPRFWFNTD 390
              E V     +                                 +       +      
Sbjct: 451 RQLEAVKTALAQADGGNDSGISDVEEDEELEETDEEDGDNGNPWASELRRLPKKKLKIII 510

Query: 391 YRRQNVEENSKA----KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
            R ++  +  +      +  +           SD LD+        +G+ D + G     
Sbjct: 511 ARLKSNLKGIEMTGVKNNVLRECAELFYRPNFSDELDADPLLFAFSNGVYDFKEGCLRDG 570

Query: 447 TKELYITKSTGTPFVEGEPSQ 467
             E  +++     F+   P  
Sbjct: 571 RPEDKLSRRAPIDFIAFAPIP 591


>gi|48477428|ref|YP_023134.1| virulence-associated protein E [Picrophilus torridus DSM 9790]
 gi|48430076|gb|AAT42941.1| virulence-associated protein E [Picrophilus torridus DSM 9790]
          Length = 1004

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 106/753 (14%), Positives = 215/753 (28%), Gaps = 76/753 (10%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLY 66
               + I N   +  L    K P      +++     + I        G   G     ++
Sbjct: 4   RYLDEFIKNKIPVFLLPPHRKDPIPGSRGFKDWTKDEKIIRSWKTENMGIPTGDIS-GIF 62

Query: 67  AFDIDSKDEKTAN-------------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
            +D D K  +  N               K   E +   P   I Q       +     G+
Sbjct: 63  VYDCDIKTGENGNIGINGLYGFLKILKLKTLDEYIQKYPDAFIVQTGSGYQFYFKIPVGL 122

Query: 114 K---KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170
               +  T  +    LD+ G G Y VA         EY          ++  PL+ E+  
Sbjct: 123 DHNLRNTTNINGIKGLDVRGNGGYVVAPGSIHPNGNEYKIIHGS----LDKIPLMPEKLY 178

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF---GEEFYNGSHD 227
              ++      +    ++  +  +    N N    T   I               +    
Sbjct: 179 NLWYEHDHPDLLSDDFNEPRMPLNLNDENLNLDIKTTAMIFKKTPASEGNNLLMAHAGLH 238

Query: 228 EWIPVVMAVHHETRGSSKGKEIA---RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284
               V +         +           ++    +Y       K +    E+     K  
Sbjct: 239 ALRDVSIENEKLILKEAAALNHWNGKINFATVDDSYRRVELQKKGNIPADEKSKTFVKGY 298

Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344
           +T   +   + +   +        D   K +        +L+ +    +Y  D +NV  +
Sbjct: 299 TTLKRIIMENRENYSENY------DEIIKNL-------EYLFESHESPFYDVDGHNVKHF 345

Query: 345 S-LTLDKITASIMNFLV--SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
           +     K   S   FL         +   ++   N+  +    F   TD        N  
Sbjct: 346 NKGKSIKYVMSKYPFLYTDDFDNLYYFSVQDGWHNDIENSLKNFIQTTDDSLSEHNINEI 405

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST-GTPF 460
                            ++ L ++   +    G+ ++E     K     + +        
Sbjct: 406 ISGIKHITYNKEF---KNNPLPNN--LIPLPSGLYNVENHALEKHNNNYFYSNINRNFIP 460

Query: 461 VEGEPSQEFLDLVSGYFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
              E S      +     + E         +  +LL  N  Q  I   G GG+GK  + N
Sbjct: 461 GVKEESLALSRFLDKVLTNPEKDKLTVYESIAWSLLNDNNIQGMIIFYGEGGNGKGIIQN 520

Query: 520 -LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
            +I    G++     + S I              L  L+  + ++ SE+ +    N   +
Sbjct: 521 SVIANLLGHENAAMPDLSRIA--------NYPFELQSLINKKALLFSESIKGVTYNWEIL 572

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI-VIPFDKPI- 636
           K++TG D     +       +       F+  N  +  ++   + WRR I ++ F   + 
Sbjct: 573 KRITGHDYENIPIKNK-PAIQYQYKSAVFLSTNNLIPPKDE-LSIWRRIINIVEFSNYLN 630

Query: 637 ---ANRDASFAQKLETK-YTLEAKKWFLK-GVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
              ++  +    +L+      +   + +      +I  G           AKE+    ++
Sbjct: 631 SLSSDEISKIVSELQDPNELDKLFSFIVDNIYPEFIKHGFKHRYN--INTAKEKYLMKSN 688

Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
               ++       E L + +  L     EY + 
Sbjct: 689 PAITYLKLKESRDEILTDPNDVL-----EYCKA 716


>gi|56418240|gb|AAV91054.1| D5 family NTPase [Grouper iridovirus]
          Length = 966

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 120/345 (34%), Gaps = 34/345 (9%)

Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
             +        +  P     P    L   S  F  E    +F R      +GGN  +  +
Sbjct: 633 PWSPTGENCIFSCDPKDFSGPVARLLAFFSTVFPDEGTRRFFLRNAAQTFIGGNPDKVCL 692

Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVI 563
              G G +GK+    L +   G   V  +  +     R P AG ANP L RL  G R  +
Sbjct: 693 FWTGTGNNGKTVTQTLFEKMLGCFAVKMSTQTLT--GRKPSAGAANPELARLGCGVRWAV 750

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDD 621
           + E N ++ INA  +K MTG D   AR  Y  G T  E    F   ++ N    +++ D 
Sbjct: 751 MEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTHEIKPLFKLHVICNTLPAIKDADQ 810

Query: 622 AWWRRYIVIPFDKPIANR--------------DASFAQKLETKYTLEAKKWFLKGVKA-Y 666
           A W R  V+PF+                    D   ++KL+         W+L    +  
Sbjct: 811 ATWNRVRVVPFEATFVTPGTKAPADAKYKFPADTDISRKLDRLTAP--LAWYLVYCWSCM 868

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
            ++ +    P   ++A  E ++  D ++ + D+                 ++ E+     
Sbjct: 869 QNETVKYVPPTKVMEATMEYQKEHDLFRQFYDEKLHQNPTACLSCDEAYAAFREWATLNC 928

Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
            +   R S   +   L+                 K     +G++L
Sbjct: 929 PHSFARRSKTQIVKCLE------------TILGKKGPTGWQGIEL 961



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/381 (14%), Positives = 108/381 (28%), Gaps = 61/381 (16%)

Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
           +  +  +IHP  +++Y                L+          +  +   L   ++   
Sbjct: 226 REAMILSIHPVERQKYFRRYDFTANNPGALLRLT---------KYSAVRAKLDMVRQRKT 276

Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252
             KT     ++    RE+T  L+    +        W+ V   +  +T+GS +G +I   
Sbjct: 277 CWKTDLTEFHKLKRFRELTGMLTGDIAD----DRQSWLHVGFCLWQQTQGSLEGYKIWLN 332

Query: 253 WSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
           +SK+    DE+     W      ++F    +    +K +    L +   K  P   + + 
Sbjct: 333 FSKKSEKCDEDECWRIWNNQMRPNSFTEGTLVYMVQKHNPAAYLNWLQTKSTPVKDMGTN 392

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT------ASIMNFLV 360
              A  K M+  Y        A  + WY+ D       +  +D  +        +   L 
Sbjct: 393 V--AMAKIMWDYYGHEFVCCGAKNQIWYRFDGLTWVESNQGIDLRSLISADGGPLKRLLT 450

Query: 361 SMKEDVFDLSEEPEDNNK----------------------------------NSKSPRFW 386
              E V     + +  N                                     K     
Sbjct: 451 RQLEAVKTALAQADGGNDSGISDVEDDEELEETDEEDGDNGNPWASELRRLPKKKLKLIM 510

Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
                  + +E      +  +           SD LD+        +G+ D + G     
Sbjct: 511 ARLKSNLKGIEMTGVKNNVLRECAELFYRPNFSDELDADPLLFAFSNGVYDFKEGCLRDG 570

Query: 447 TKELYITKSTGTPFVEGEPSQ 467
             E  +++     F+   P  
Sbjct: 571 RPEDKLSRRAPIDFIAFAPIP 591


>gi|229192873|ref|ZP_04319831.1| hypothetical protein bcere0002_45240 [Bacillus cereus ATCC 10876]
 gi|228590712|gb|EEK48573.1| hypothetical protein bcere0002_45240 [Bacillus cereus ATCC 10876]
          Length = 741

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 104/787 (13%), Positives = 238/787 (30%), Gaps = 78/787 (9%)

Query: 6   WKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           WK + +   ++    +P  L     +      W       E+  +    G GF+    E 
Sbjct: 2   WKAEVR---NSKATKVPYQLNGSMAQSNNRNTWSTFEEVLEEYQQGDYNGIGFMF-SKED 57

Query: 64  PLYAFDIDSKDEKTA-NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
                DID   ++       +    L  +          I I  +            ++ 
Sbjct: 58  VFIGIDIDHCVQEGEFTELAEDIMKLVPSYTEYSPSGDGIHIIAKGKIPLRGPGTGKKNP 117

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
              L+I   G+YF                  P +   E+  +L ++ +E         T 
Sbjct: 118 SIGLEIYRHGRYFTFTGASIN--------NLPVKESTENLKVLFQKYIEKKEVLVVPKTP 169

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH---- 238
            + ++      S +      R + ++   A    F     NG H       MA+ +    
Sbjct: 170 SVSRESNINNLSSSELW--ERMFNSKNGRAIRDLFCGVLINGDHSS---TDMALANHLAF 224

Query: 239 -ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297
              + ++K   + R  +     +D      K  + D    G                 + 
Sbjct: 225 WTDKDAAKMDSMFRESALIRDKWD------KPHSSDGRTYGQMT---------IEKAIES 269

Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357
               +     S  YN+         H+L     +    K  +     +         IM 
Sbjct: 270 THSSVSDYNHSSDYNRK-----NDVHYLVNEQGETTGIKKGSWWSENNG-RTSFLHHIMV 323

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFW--FNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
             +  +  +     E  D    +++   +    T  + +++  +++     Q  E     
Sbjct: 324 EYILQENKIVRFPNEDGDIYVYNRATGIYEIDKTCRKLRSLVRDAEILKRNQVREVQEYI 383

Query: 416 SITSDLLDS-SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
              S +++  S  ++  ++G+L L++ +  + T  +++TK   T +            + 
Sbjct: 384 MDMSPVVNEESKNYIAVENGLLHLDSMEFKEFTPMVFVTKKIPTKYNSKAFDSFVERTLM 443

Query: 475 GYFESEEV--MDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAF-GNQYV 530
                  +  +       G  L       +  ++ G    +GKST++ +I+  F   + +
Sbjct: 444 KV-SDGHLPTIKNIHEMFGAVLYPTLLVPKMFYLYGRSAHNGKSTVLYMIQKTFNSGENI 502

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
                  + +N    +         + G    I+ +  +    ++  +K +  G  +   
Sbjct: 503 SAISPQKLAENAFAGSS--------IYGKLANIVDDQPDEVIRDSGTLKTIITGGYVDIE 554

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
              G        +       N +   R   +   +R  ++PFD    N     ++    K
Sbjct: 555 YK-GKGSQTVQMNTVCITASNHYPNFREHGNQINKRLHILPFDHNFMNDPDRISEMESMK 613

Query: 651 ------YTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
                       K  +  +K    + +D +   E   +AK+   +  D    +     + 
Sbjct: 614 QLETVTAREYVLKLAVDAIKEMKQRTVDILTYNEKAEEAKQNFMEYNDPLIDFF---FEY 670

Query: 704 GENLWEESH--SLAKSYSEYREQELNYDRKRISTRTVTLNL-KQKGFIGGIKREKIEKEW 760
            +  +EE       K+Y E+ +    + +  +  +     +  + G     K+ KI    
Sbjct: 671 DKQFFEEVRGTDALKAYDEWCKDN--HVQYPLGQKQFKDAVCTKYGMEWKDKKVKINSTS 728

Query: 761 KSKRIIK 767
           K+ +  K
Sbjct: 729 KTVKGFK 735


>gi|148543897|ref|YP_001271267.1| P4 family phage/plasmid primase [Lactobacillus reuteri DSM 20016]
 gi|184153296|ref|YP_001841637.1| phage DNA primase [Lactobacillus reuteri JCM 1112]
 gi|227364805|ref|ZP_03848853.1| P4 family phage/plasmid primase [Lactobacillus reuteri MM2-3]
 gi|325682570|ref|ZP_08162087.1| phage/plasmid primase [Lactobacillus reuteri MM4-1A]
 gi|148530931|gb|ABQ82930.1| phage/plasmid primase, P4 family [Lactobacillus reuteri DSM 20016]
 gi|183224640|dbj|BAG25157.1| phage DNA primase [Lactobacillus reuteri JCM 1112]
 gi|227070149|gb|EEI08524.1| P4 family phage/plasmid primase [Lactobacillus reuteri MM2-3]
 gi|324978409|gb|EGC15359.1| phage/plasmid primase [Lactobacillus reuteri MM4-1A]
          Length = 463

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 144/440 (32%), Gaps = 40/440 (9%)

Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
           +   +                 +   + S       +  +R   +   SK  +       
Sbjct: 44  SNQFIEHGYWFDPKSRQWKNYADSVIEKSIKNEIVPHGIWRTNLLASVSKLIALDSQ--- 100

Query: 412 GSIFSITSDLLDS-SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
                +  +  D  +           +L T      + E Y+ ++          +  + 
Sbjct: 101 ---EIVEDNPFDQPAPYKAVFGKHTYNLMTDTLEDNSPENYLLQNRPYELETKGKATTWN 157

Query: 471 DLVSGYF--ESEEVM---------------DYFTRCVGMALLGGNK-AQRFIHIRGVGGS 512
             +       ++E+                +     +G AL G  K  Q ++ + G+GG 
Sbjct: 158 KWLKQSLVPSTKEIRDDTGKLQDEYDLTAIETVKAFIGFALAGSFKDFQIYMILYGLGGD 217

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
           GKST +N +    G   V N     +   +     +A  +  +L      + ++ +    
Sbjct: 218 GKSTFLNKLMELIGKPNVSNVSLEALSDQK-----EAKFATSQLYHKAANVFADISPKFM 272

Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
                IK +TGGD  TA+  Y + + +           N      +  D + RR I++ F
Sbjct: 273 EQTNIIKTLTGGDATTAQFKYKDPF-KLENEAKLIFSANDLPAFNDFTDGFKRRPIIVTF 331

Query: 633 DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
              I +    F ++   +         LK  K  +  G    + E   + K       D 
Sbjct: 332 -HKIKHFKEQFKEQDFKREMPAFAYECLKSYKKALDSG-KFPVTEYMEQQKRSWVNANDN 389

Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
              WI+DCC   EN  E+S  L  +Y EY +   N     +S R     L  +G+    K
Sbjct: 390 IGNWINDCCTTNENDKEKSVYLYGNYKEYCK---NTAVPCLSNRKFAKELIARGY----K 442

Query: 753 REKIEKEWKSKRIIKGLKLK 772
              ++   K+ +  KG+ LK
Sbjct: 443 HTTVKINGKNVKGYKGIALK 462


>gi|237710652|ref|ZP_04541133.1| phage/plasmid primase P4 [Bacteroides sp. 9_1_42FAA]
 gi|229455374|gb|EEO61095.1| phage/plasmid primase P4 [Bacteroides sp. 9_1_42FAA]
          Length = 545

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 118/364 (32%), Gaps = 33/364 (9%)

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
           +    L   +  +   + + D+   +     +    T      +   E    +   +   
Sbjct: 106 VAGKALKPDNAIVVFNNCVFDMSARRAHSFNRRWVQTTCVPYDYKPEEHVFLWRMFLDEV 165

Query: 477 FESEEVMDYFTRCVGMALLGGN--KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
              + +       +G   +     K +  + +RG G +GKS +   I    G + V N  
Sbjct: 166 LPDKNMQKVLQEFLGSIFVDRRVAKMETMLVLRGSGSNGKSVVFETIMGILGRENVSN-- 223

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-EINAAKIKQMTGGDCMTARLNY 593
                        +   ++  + G R+   SE    +   ++  +K +  G+   AR  Y
Sbjct: 224 ---FGIGALITGNERKKNIAFINGKRLNYCSEIQALEFGKDSDTLKSLISGEPTEARPIY 280

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKY 651
           G+ ++            N+  ++++      RR  +IPF+  I    +    ++ LE   
Sbjct: 281 GDNFTAYNIP-LLMANANQMPYLKDWSYGMRRRICIIPFEVEIPKARQKKELSRDLE-AE 338

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI---------DDCCD 702
                 W L+G   +I+ G  +   +      +E +  + T   ++         ++  D
Sbjct: 339 YPAIFNWILEGRDRFIANGYKLTDSKELENVMDEYQSESSTVMKFMYQMNYLCRYEEIAD 398

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
           I    W  S  L + Y ++       +            L + G+         +K   +
Sbjct: 399 IEPK-WMSSAILYRKYCKWCRDNNAKEENV---TVFGRILSEAGY--------RKKRTPN 446

Query: 763 KRII 766
            ++ 
Sbjct: 447 GQVY 450


>gi|281492874|ref|YP_003354854.1| phage DNA primase [Lactococcus lactis subsp. lactis KF147]
 gi|281376526|gb|ADA66012.1| Phage protein, DNA primase [Lactococcus lactis subsp. lactis KF147]
          Length = 542

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 113/322 (35%), Gaps = 21/322 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF-ESE 480
             +   +GI + +T Q    + +   T +  T +               D +       +
Sbjct: 178 HLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNAKAKVPNINGWNVDDWLLDLMSGDK 237

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           E++    + +  +  G    ++ + + G G  GK T  +LI    G + V + +A    +
Sbjct: 238 ELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFSE 297

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
                      SL +++G   +I  ++  +   NA     +  GD +             
Sbjct: 298 ---------RFSLSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAV 348

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
             +       N     RN  +  +RR +++PF+K     + ++  K +     +  ++ L
Sbjct: 349 -FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFNKSFTADNDNWKIKDDYIKRKDVLEYVL 407

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
           K   +   +    D P+      ++ +   D   A+++D  +   + +  +  L+  Y  
Sbjct: 408 KIALSLNFE--KFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTTFLSALYRA 465

Query: 721 YREQELNYDRKRISTRTVTLNL 742
           + E E     K  + R     L
Sbjct: 466 WCEDEG---VKPFTKREFENKL 484


>gi|169826081|ref|YP_001696239.1| hypothetical protein Bsph_0484 [Lysinibacillus sphaericus C3-41]
 gi|168990569|gb|ACA38109.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 656

 Score =  190 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 138/404 (34%), Gaps = 28/404 (6%)

Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
           NKNS         +  ++ +  N   +       +  +    ++ L SS   +   + + 
Sbjct: 271 NKNSDRIIRKIIPENSKKYINSNKITEILVWIKSSDELVCAETNTL-SSKYLISFSNYVY 329

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQ---EFLDLVSGYFESEE-VMDYFTRCVGM 492
           D++    +  +   +IT      F     S     F   ++   +++  + D      G 
Sbjct: 330 DIKNEITLDHSSRYFITNKLNANFTIPLTSDSGIHFEKFLNTITQNDSVLYDRLQELFGY 389

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
            L      +    + G   +GKS ++ L++Y  G     N                 +  
Sbjct: 390 VLSEIRDIKYIPILIGQKDTGKSVILKLLEYIIGEDNFSNISIDQF---------NNSVY 440

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           L  L G R+   +E +E +      +K+++G D +TAR  Y +   +           N 
Sbjct: 441 LAELYGKRLNSCAEISELNLKRLDILKKLSGNDYVTARPMYSDP-IKFINQSVLLFAGNN 499

Query: 613 HLFVR--NPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
              +   +   A+  R ++ PF+ PI    +D     KL          W +KG+   ++
Sbjct: 500 LPNIENLDSSSAFKERLLLFPFNNPIPKEHQDNELIDKLI-AEIDYIAHWSIKGIHRLLN 558

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
                          +     +++ + ++   C         +  L ++Y  Y E   NY
Sbjct: 559 NNFQFTTSFEIEDTFKPYL--SNSLEEFLLSECAYQTKYQIHTDDLYQAYIVYCE---NY 613

Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
             K IS ++    LK++     +   +      +K    G+ LK
Sbjct: 614 SFKIISKKSFIQILKKQ---SNLSFRRFRMRGTNKYGFIGIGLK 654


>gi|326407787|gb|ADZ64858.1| phage protein, DNA primase [Lactococcus lactis subsp. lactis CV56]
          Length = 544

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 113/325 (34%), Gaps = 21/325 (6%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF- 477
           + +  +   +GI +  T      +     T +  T +               D +     
Sbjct: 175 AEAHLIPVANGIFNKNTQNLEPFSPSYVFTSTIATKYNAKAKVPNINGWNVDDWLLDLMS 234

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
             +E++    + +  +  G    ++ + + G G  GK T  +LI    G + V + +A  
Sbjct: 235 GDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQ 294

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
             +           +L +++G   +I  ++  +   NA     +  GD +          
Sbjct: 295 FAE---------RFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPT 345

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
                +       N     RN  +  +RR +++PF+K   + + ++  K +     +  +
Sbjct: 346 LAV-FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFNKSFTSDNDNWKIKDDYIKRKDVLE 404

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
           + LK   +        D P+      ++ +   D   A+++D  +   + +  +  ++  
Sbjct: 405 YVLKIALSL--NFDKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTTFISAL 462

Query: 718 YSEYREQELNYDRKRISTRTVTLNL 742
           Y  + E E     K  + R   L L
Sbjct: 463 YRAWCEDEG---VKPFTKREFELKL 484


>gi|116512920|ref|YP_811827.1| phage DNA polymerase [Lactococcus lactis subsp. cremoris SK11]
 gi|116108574|gb|ABJ73714.1| Phage DNA polymerase (ATPase domain) [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 542

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 66/501 (13%), Positives = 156/501 (31%), Gaps = 32/501 (6%)

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-ADTK 331
           D +++ D A  + +         ++I         +          ++  +   +     
Sbjct: 33  DGKKVVDVAGYQDSLKDWLEQEKEIINSPDYVKANTQTLRAVRKLFFEHRNLFLSTPKED 92

Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
               K  + +    +    +  + ++    +           E N        +W    Y
Sbjct: 93  GKPPKSLSPLETARIIYKTLKVNKLDHQSGLLGIYNHELGIYETNENFFHRLIYWLEPSY 152

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
            +   +E      T   ++  +  +            +   +GI + +T Q    +    
Sbjct: 153 SQARSKEVLFKLETLAEVKQQTAEA----------HLIPVANGIFNKKTQQLEPFSPSYV 202

Query: 452 ITKSTGTPFVEGEPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIH 505
            T +  T +     +         D ++      EE++    + +  +  G    ++ + 
Sbjct: 203 FTSTIATKYNAKAKAPNINGWNIDDWLNDLMSGDEELVKLLWQVISASTNGNYSYRKGVW 262

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G G  GK T  +LI    G + V + +A    +           +L +++G   +I  
Sbjct: 263 LVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAE---------RFALSQVVGKTCIIGD 313

Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
           ++  +   NA     +  GD +               +       N     RN  +  +R
Sbjct: 314 DSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAV-FNKLVIQSTNFLPKFRNKSNGTYR 372

Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
           R +++PF+K     + ++  K +     +  ++ LK   +        D P+      ++
Sbjct: 373 RLLIVPFEKSFTADNDNWKIKDDYIKRKDVLEYVLKIALSL--NFDKFDEPKATKGLLDD 430

Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            +   D   A+++D  D   + +  +  L+  Y  + E E     K  + R     L   
Sbjct: 431 FKISNDNVLAFVNDIFDEFVSDFLPTTFLSALYRAWCEDEG---IKPFTKREFENKLPDH 487

Query: 746 GFIGGIKREKIEKEWKSKRII 766
                IK  +        R I
Sbjct: 488 IKEKWIKTTQRPNSAGFNRAI 508


>gi|125625017|ref|YP_001033500.1| putative DNA primase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493825|emb|CAL98818.1| putative Dna Primase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071817|gb|ADJ61217.1| putative DNA primase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 542

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/501 (13%), Positives = 155/501 (30%), Gaps = 32/501 (6%)

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-ADTK 331
           D +++ D A  + +         ++I         +          ++  +   +     
Sbjct: 33  DGKKVVDVAGYQDSLKDWLEQEKEIINSPDYVKANTQTLRAVRKLFFEHRNLFLSTPKED 92

Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
               K  + +    +    +    ++    +           E N        +W    Y
Sbjct: 93  GKPPKSLSPLETARIIYKTLKVIKLDHQSGLLGIYNHELGIYETNENFFHRLIYWLEPSY 152

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
            +   +E      T   ++  +  +            +   +GI + +T Q    +    
Sbjct: 153 SQARSKEVLFKLETLAEVKQQTAEA----------HLIPVANGIFNKKTQQLEPFSPSYV 202

Query: 452 ITKSTGTPFVEGEPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIH 505
            T +  T +     +         D ++      EE++    + +  +  G    ++ + 
Sbjct: 203 FTSTIATKYNAKAKAPNINGWNIDDWLNDLMSGDEELVKLLWQVISASTNGNYSYRKGVW 262

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G G  GK T  +LI    G + V + +A    +           +L +++G   +I  
Sbjct: 263 LVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAE---------RFALSQVVGKTCIIGD 313

Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
           ++  +   NA     +  GD +               +       N     RN  +  +R
Sbjct: 314 DSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAV-FNKLVIQSTNFLPKFRNKSNGTYR 372

Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
           R +++PF+K     + ++  K +     +  ++ LK   +        D P+      ++
Sbjct: 373 RLLIVPFEKSFTADNDNWKIKDDYIKRKDVLEYVLKIALSL--NFDKFDEPKATKGLLDD 430

Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            +   D   A+++D  D   + +  +  L+  Y  + E E     K  + R     L   
Sbjct: 431 FKISNDNVLAFVNDIFDEFVSDFLPTTFLSALYRAWCEDEG---IKPFTKREFENKLPDH 487

Query: 746 GFIGGIKREKIEKEWKSKRII 766
                IK  +        R I
Sbjct: 488 IKEKWIKTTQRPNSAGFNRAI 508


>gi|258511071|ref|YP_003184505.1| DNA primase small subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477797|gb|ACV58116.1| DNA primase small subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 1036

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/394 (16%), Positives = 133/394 (33%), Gaps = 40/394 (10%)

Query: 419 SDLLDSSSRFLGEQDGILDLET-----GQKVKPTKELYITKSTGTPFVEGEPSQ------ 467
            ++ ++    +   +G+LD+        +    +    I      PF E           
Sbjct: 623 HEVWNTEP-LVPFVNGLLDMSDPFDHDWRVYDFSPRHRINWKLTIPFFENWYRTPKSWTL 681

Query: 468 -------EFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMN 519
                  + LD     F  +E        +G  L       + +  + G G +GKSTL+ 
Sbjct: 682 AMKDAEVDVLDFFRTTFPDDETRRSILEFLGYCLCRWDQSEECYAILYGPGQNGKSTLLG 741

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
           ++  AFG   V  +  S           +   +   L  + I I+ +       + + +K
Sbjct: 742 MLAKAFGIYAVTESVQSL---------ERNRFASASLTRAAIDIVPDMAGTGIEDTSFLK 792

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
              G D + A   +  ++ E           N+    ++P   ++RR ++ P  +    +
Sbjct: 793 GWIGNDVVRAERKFKASF-EFKPQTKLIYGANELPPTKDPTHGYFRRILLYPMMERFKRQ 851

Query: 640 DASFAQKLETKYTLEAKKWF-LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
              + ++L T   L    +  L   +    +G ++   +  L+ K+   +  D  +A ID
Sbjct: 852 GPGWVERLRTPEALSYMCYLGLLHYRQMRREGRNITESKEMLREKDYYWRANDVVKAAID 911

Query: 699 D-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
           +   + G+        L K+   Y ++                 L++       K E   
Sbjct: 912 EGIIEFGKEFSVPRDLLQKAMEIYAKETGR------KYPGAAKLLERLRNYAPHKIEYSR 965

Query: 758 KEWKSKRI--IKGLKLKPAFESVDDNSNIIDFKR 789
                KRI    G+ L  A  S+  +  I+D  R
Sbjct: 966 PRRNGKRIHMWTGVTLGEAGRSLFVSREIVDLDR 999


>gi|223933202|ref|ZP_03625193.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591]
 gi|223898132|gb|EEF64502.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591]
          Length = 517

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 124/356 (34%), Gaps = 27/356 (7%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ES 479
            RF+  ++GI D +  +    T       +  T +     S         D +       
Sbjct: 154 KRFILVKNGIFDKQLKKMSGFTHRFVAFSTIETEYDPFAESPNIDGWDVDDWLLDLMSGD 213

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
           ++++    + +  +L G    ++ I   G G  GK T+  LI    G + V   + +   
Sbjct: 214 KDLVHLLWQVISASLNGNYSYRKSIWFVGEGNDGKGTVQQLITNIVGIRNVATLKLNQFS 273

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYS 598
           +           +L  + G  ++I  +      I+  +    +  G+ +         YS
Sbjct: 274 E---------RFALSMIEGKTVIIGDDVQAGVYIDESSNFNSVVTGEPVLVEEKNKQPYS 324

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
                 T     N+    +N  +  +RR+++IPF K  + ++ ++  K E     + K++
Sbjct: 325 TV-FKKTVIQSTNELPRFKNKTNGTYRRFLIIPFRKTFSAKEDNWQIKDEYINRDDVKQY 383

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
            LK              P+  L   EE +   DT +A+ID+     ++       L   Y
Sbjct: 384 VLKKALEL--NFTRFSEPQATLDVLEEFKSSNDTVKAFIDEWFGTFQSERLPVRFLWWLY 441

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKG-FIGGIKREKIEKEWKSK----RIIKGL 769
            E+ ++E       ++       L +        KR K  + +K      R   G 
Sbjct: 442 QEWCKEEGITK---VAKGKFERQLIKLLPAEWEKKRAKPTRRFKPSLDVPRRYTGF 494


>gi|301300721|ref|ZP_07206906.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851659|gb|EFK79358.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 444

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 128/343 (37%), Gaps = 22/343 (6%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEV 482
             + F+  ++G+ +++  +    T  + IT      +          +++        ++
Sbjct: 107 QDANFIAFKNGVYNIKEKRLEPYTPNIIITNKIDYDYGPSAKCSLVDEIMDKLACHQRDL 166

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
           ++     +       N+  +F  + G G +GKST +++I+   G++ + + + S++ Q  
Sbjct: 167 VNLLYEIIAYTFYRRNELGKFFILTGSGANGKSTYLDMIRTLLGSKNISSLDVSELDQ-- 224

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                        L G    I  + +++   + + +K++  G+ +TA     + +     
Sbjct: 225 -------RFKTSELAGKLANIGDDISDSYIKDTSILKKLVTGEAVTAERKGLDPFM-FEN 276

Query: 603 SFTPFIVPNKHLFV--RNPDDAWWRRYIVIPFDKPIANRDASFA--QKLETKYTLEAKKW 658
                   N    +   +   A  RR +++PF+   + +D  +    K + +     K  
Sbjct: 277 YSKLLFSANSIPRLGKGSDTKALNRRMVIVPFNATFSPKDPDYKPYIKYDLRQENAIKYL 336

Query: 659 FLKGVKAYIS--KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
            +K ++A     +       E+  +  E+     +    + DD  +  + L + +  + K
Sbjct: 337 IVKSIEALHRILENNGFTKSELADRELEKYEYENNPILGFFDD-LEETDYLNQPTKDVYK 395

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
            Y+EY  +        +S  + +  +    F    K  ++  +
Sbjct: 396 LYTEYCLRNG---LNSVSNISFSRQITSH-FNLTSKSSRVNGK 434


>gi|254366072|ref|ZP_04982117.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|134151585|gb|EBA43630.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
           Haarlem]
          Length = 248

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 62/256 (24%), Positives = 105/256 (41%), Gaps = 17/256 (6%)

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
                I+YA G+          + +      G+     + L G R V +SE+ ++  +  
Sbjct: 1   MFDKAIRYALGDYACTAEPDLFMHRENAHPTGE-----MDLRGVRWVAVSESEKDRRLAE 55

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           + IK++TGGD + AR      + E   S TP ++ N    V   D A WRR  V+PF+  
Sbjct: 56  STIKRLTGGDTIRARKM-RQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVV 114

Query: 636 IA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
           I    +D     +L+         W + G   Y   GL    P+  L A    R+ +DT 
Sbjct: 115 IPADEQDRELDARLQL-EADSILSWAVAGWSDYQRIGL--SQPDAVLAATSNYREDSDTI 171

Query: 694 QAWI-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
           + +I D+C      L   +  L +++  +R QE       IS +    +L   G+    K
Sbjct: 172 KRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEG---VPEISRKAFGQSLDTHGYPVTDK 228

Query: 753 REKIEKEWKSKRIIKG 768
               +  W++   ++G
Sbjct: 229 AR--DGRWRAGIAVRG 242


>gi|83309457|ref|YP_419721.1| hypothetical protein amb0358 [Magnetospirillum magneticum AMB-1]
 gi|82944298|dbj|BAE49162.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 757

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 112/298 (37%), Gaps = 30/298 (10%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGK--------WE---EQLLS---SEKIDKLPAC 52
                + + NG+  IP+  G K+P R           W    ++  +    E     P  
Sbjct: 9   ARFGARLVDNGYPAIPIWPGTKKPGRFQAGAWCDYPAWTRHCDRPTTLIEVETWATWPDA 68

Query: 53  GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKE 111
             G  CG     L   DID  D   A+  +     + G TP++RIG+ PK L+ +R +  
Sbjct: 69  AIGLACGT----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYRADVP 124

Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVEDTPLLSEEDV 170
               K+        L+IL  G+ FVA+ IHP T + Y W    P    ++D P+++EE V
Sbjct: 125 FSGPKRAP------LEILAQGRQFVAFAIHPDTGQSYVWPEDSPLTVALDDLPVVTEESV 178

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
                    +    ++    + PS +  + + ++ T   + + L+       +  +D W+
Sbjct: 179 RQWLDAAIALLPDDLRPATLVSPSVSMPSTSPQRGTLAAVRSALAHI--PNADLEYDSWV 236

Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
            + MA+         G  +   WS   +          W +F    IG          
Sbjct: 237 RIGMAMKGAI--GEDGASLFAAWSAMSAKDVPAATAKAWASFRPTTIGAGTLYHHAME 292


>gi|160943486|ref|ZP_02090719.1| hypothetical protein FAEPRAM212_00977 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445165|gb|EDP22168.1| hypothetical protein FAEPRAM212_00977 [Faecalibacterium prausnitzii
           M21/2]
          Length = 448

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 152/443 (34%), Gaps = 33/443 (7%)

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
            W  +  K+  +     +  K  +  L ++  D N         +      ++   ++ A
Sbjct: 26  PWVDSKGKVRETAYCQYLLEKHPMMCLKQKLFDQNGEVDEDALLYEVHSDLRDFVLDNLA 85

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
           K   Q L+A  I + T +        +  Q+G   L+    V   ++          +  
Sbjct: 86  KKEKQVLDALRIETYTPE-WKPQLDRIHLQNGTYFLDERGFVP--EKELCLNRLPVEYQP 142

Query: 463 GEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
             P+  ++L+ + G     E +      +G  L+   KAQ+ + + G GG GKS +  L+
Sbjct: 143 DAPAPTKWLEFLDGLL-IPEDILTLQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIGLLL 201

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
           K  FG     +     I  NR             L    +++  + N         IK +
Sbjct: 202 KKLFGE-ASHSESILRIETNRFAS--------ANLEYKLVMVDDDLNMVALPETRNIKSI 252

Query: 582 -TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
            T  D +                          +   +  D +WRR I+I     + +RD
Sbjct: 253 VTAEDRLCIERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILI----TVKDRD 308

Query: 641 A-----SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
                  F  +  ++       W L+G+   ++      I E  ++  E     +D    
Sbjct: 309 PARVDNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQ 368

Query: 696 WI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-NLKQKGFIGGIK 752
           ++          +  E S  L ++Y+++ E  L      +  +  +   LK  G  G   
Sbjct: 369 FMQATAYVRFKPDTEERSTYLYRAYTKWCEDNLES---PVPQKKFSQFLLKNAGKYGLTF 425

Query: 753 REKIEKEWKSKRIIKGLKLKPAF 775
            + IE ++   R  +G+ + PAF
Sbjct: 426 SKHIEGKY---RGFRGVCVHPAF 445


>gi|313895672|ref|ZP_07829228.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975798|gb|EFR41257.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 759

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 99/742 (13%), Positives = 211/742 (28%), Gaps = 103/742 (13%)

Query: 34  GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPI 93
             W     +    +     G GF+     + +Y  DID +DE  A               
Sbjct: 44  ASWVTFEEARRAAEASSYGGVGFII---PKGMYFLDIDHRDEADAMVQLQ-IRRHDTYAE 99

Query: 94  VRIGQKPKILIPF------RMNKEGIKKKKTT-------ESTQGHLDILGCG---QYFVA 137
             +      +  +      R+ K   K  K         ++    +++   G   ++ V 
Sbjct: 100 KSVS--GNGIHIYGCCDYDRIPKTKDKDGKEKLDPKFYVKNPHNGMELYVGGLTNRFAVF 157

Query: 138 YNIHPKTKKEYTWTTPPHRFKVEDTP--LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195
                                + D P    +E  +  L K          + K+    + 
Sbjct: 158 TGDV-----------------LHDVPFADGTEAVLTTLRKDMLRKQPVNYRPKEDGDRAV 200

Query: 196 TWTNNNNRQYTNREITAFLSCFGE--EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRW 253
                + R+  N    A L   G+  E+ + S  +     +        ++    + R  
Sbjct: 201 FDIVCSLRKAKNGGKFARLFDRGDISEYGSASEADAALCALIAFRTGNDAALIDAVFR-- 258

Query: 254 SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNK 313
                      +  KW+  D++         +                   ++ +   + 
Sbjct: 259 -------KSALYRRKWEREDYKAATIRVGVEACHGVFHASVMDHPDFIHFNAKGNPVISC 311

Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373
              + Y + +  Y     +   +     Y++   + ++ A  M     +K  +     E 
Sbjct: 312 PALADYIRQNLHYIFVRDS--ARHGVLRYVYEGGVYRLYADDM-LKGLIKNCIASYDSEM 368

Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
            +  K  ++ R                                I    L++    +  Q+
Sbjct: 369 IEMRKVDETFRILTTDLN------------------------YIKDSDLNADEDIINFQN 404

Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYF-ESEEVMDYFTRCVG 491
           GIL L T +  +   +L  T      + + +  +  F   +        E+       +G
Sbjct: 405 GILHLSTMELTEHASDLLSTIQIPCAWSQEDLATPVFDRFMQTLTDGDSEIQQLLLEFIG 464

Query: 492 MALLGGNKAQ--RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
             L      +  + + + G G +GKS L  L++   G    +  +  +I          A
Sbjct: 465 ACLSNVKGWRMKKALFMYGAGDTGKSRLKCLVEQLLGRGNYVGIDLREIE---------A 515

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 + G R+   S+ +          K+ TGGD + A     N + E   +   +  
Sbjct: 516 RFGTGLIYGMRLAGSSDMSFITVDELKTFKKCTGGDSIFAEFKGQNGF-EFTFNGLFWFC 574

Query: 610 PNKHLFVRNPDDAWW--RRYIVIPFDKPIA-NRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            N+       DD  W   R + +     I  ++   F  +          +  +  ++A 
Sbjct: 575 MNQLPRFGG-DDGQWVHDRIMQVHCKNAIPIDKQDRFLGEKLYAERDGIVRKAVHALRAV 633

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL----WEESHSLAKSYSEYR 722
           I  G     P+  L A+EE     ++  A+  +C              +  + + Y  + 
Sbjct: 634 IQNGYRFTEPQSVLAAREEYMVENNSVLAFHAECMMKRPEGVKCSEVTTGQVYRIYQTWC 693

Query: 723 EQELNYDRKRISTRTVTLNLKQ 744
               N      + R     L +
Sbjct: 694 RLNNNG--YAKTAREFRTTLAR 713


>gi|307591581|ref|YP_003900380.1| primase P4 [Cyanothece sp. PCC 7822]
 gi|306986435|gb|ADN18314.1| primase P4 [Cyanothece sp. PCC 7822]
          Length = 1006

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 77/506 (15%), Positives = 160/506 (31%), Gaps = 60/506 (11%)

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
                        +              +  +Y      Y      W +  +N++     
Sbjct: 322 HNQPSEEEDNSNEQPSTGLPKQSRLVAQIQELYNDKF-KYNDQANTWLEYQENSLLH--- 377

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
                                   +       N +     +N    R     +S      
Sbjct: 378 ------------------------DGSWVPVSNLRIQTQIYNILQARGYEFNSSYLNGVE 413

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEP 465
             L+             S+   +G  D + +L TG+  + +   Y+T     PF      
Sbjct: 414 DLLKKALYI----KEWPSTKDLVGFSDCVYELSTGKTREHSPHNYLTWVLPRPFNPLSRS 469

Query: 466 SQEFLDLVSGYFESEEVMDYFTR-CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
                + ++   ++ +             L      Q+F+H+ G GGSGKS+ MNL+   
Sbjct: 470 WTTIDEWLTEATQNNQTHKQILICYAAAVLRQRADLQKFLHLIGTGGSGKSSFMNLLVAL 529

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G Q  I+ +   + +            +    G  + I  + +   + N +  K+MTG 
Sbjct: 530 VGQQNTISLDFPSLNEKDA---------IAEAFGKALAIFPDQDSAGK-NLSNFKKMTGQ 579

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644
           D +  R  Y + +S         +  N  +F         RR +++PF+  +A+ +    
Sbjct: 580 DLLRGRRLYKDGFS-FKFGGMCVLSSNHPIFHAGSGRWLTRRVLMVPFNLAVADGNVRNL 638

Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDD---- 699
           +K           + L      I   L  ++  +V      E ++ +D   +W++D    
Sbjct: 639 EKEFEPELSAFTSYLLSIPTEEIEATLKGLNKKQVISSTLWESQKRSDGLASWVNDEIIF 698

Query: 700 ----CCDIGENLWEESHSLA-----KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
                  IG N  E +           +  Y        R+ ++    + NL +    G 
Sbjct: 699 DCTAKTQIGSNAREWNDEDYNPLKSTLFGSYCHHIRRSGRQPLTKDNFSANLIEL-LKGT 757

Query: 751 IKREKIEKEWKSKRIIKGLKLKPAFE 776
           +K++  +++    R + G++L+ A +
Sbjct: 758 LKKDVDKRKTNQGRFLMGVRLRTAQD 783


>gi|218291388|ref|ZP_03495331.1| ATPase-like protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218238743|gb|EED05959.1| ATPase-like protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 1039

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 83/552 (15%), Positives = 178/552 (32%), Gaps = 58/552 (10%)

Query: 275  EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA----YNKAMFSIYKKGHFLYTADT 330
             E    A +             L       + +S+          ++  KK HF+Y  + 
Sbjct: 472  AEDWVEAPEDVIVHEPVAWTEDLSEAPEEDTNWSERPFTNRTAREWARVKKSHFVYVDEE 531

Query: 331  KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF--- 387
            K      ++ +     TL K   ++  F  S       +   P D+ ++    R +    
Sbjct: 532  KG----KEHLLLRRMATLIKKDFNLQYFFQSCYYYDGTIYTTPTDDGEDEAVIRDFILEA 587

Query: 388  ------NTDYRRQNVEENSKAKSTAQSLEAGSIFSIT-SDLLDSSSRFLGEQDGILDLET 440
                        +  E      +  Q     S+ SI   ++ ++    +   +G+LD+  
Sbjct: 588  LETIKPTWATWSRAEEIKRMLINNVQRDRNHSVESIRVHEVWNTEP-LVPFANGLLDMSD 646

Query: 441  -----GQKVKPTKELYITKSTGTPFVEGEPSQ-------------EFLDLVSGYFESEEV 482
                  +    +    I      PF E                  + LD     F  +E 
Sbjct: 647  PFDHDWRVYDFSPRHRINWKLTIPFFENWNRTPKSWTLAMKDAEVDVLDFFRTTFPDDET 706

Query: 483  MDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
                   +G  L       + +  + G G +GKSTL+ ++  AFG   V  +  S     
Sbjct: 707  RRSILEFLGYCLCRWDQSEECYAILYGPGQNGKSTLLGMLAKAFGVYAVTESVQSL---- 762

Query: 542  RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
                  +   +   L  + I I+ +       + + +K   G D + A   +  ++ E  
Sbjct: 763  -----ERNRFASACLTRAAIDIVPDMAGTGIEDTSFLKGWIGNDVVRAERKFKASF-EFK 816

Query: 602  ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF-L 660
                     N+    ++P   ++RR ++ P  +    +   + ++L T   L    +  L
Sbjct: 817  PQTKLIYGANELPPTKDPTHGYFRRILLYPMMERFKRQGPGWVERLRTPEALSYMCYLGL 876

Query: 661  KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYS 719
               +    +G ++   +  L+ K+   +  D  +A ID+   ++G++       L K+  
Sbjct: 877  LHYRQMRREGRNITESKEMLREKDYYWRANDVVKAAIDEGIIELGKDYIVPRDLLQKAME 936

Query: 720  EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE--WKSKRIIKGLKLKPAFES 777
             Y ++                 L++       K E        K   +  G++L  A   
Sbjct: 937  IYAKETGR------KYPGAAKLLERLRNYAPHKIEYSRPRLNGKPTHVWTGVRLGEAGRM 990

Query: 778  VDDNSNIIDFKR 789
            +  +  +++  +
Sbjct: 991  LLVSREVVNLDQ 1002


>gi|220925612|ref|YP_002500914.1| P4 family phage/plasmid primase [Methylobacterium nodulans ORS
           2060]
 gi|219950219|gb|ACL60611.1| phage/plasmid primase, P4 family [Methylobacterium nodulans ORS
           2060]
          Length = 978

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 62/444 (13%), Positives = 137/444 (30%), Gaps = 41/444 (9%)

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
             ++  K+  +   +       +  S    +            +   +     EA     
Sbjct: 443 EAILFTKKTAWRYRDGIWAMETDGLSS---WLNVQIEMACAALNIVSTLKLISEARGWIQ 499

Query: 417 ITSDLL-DSSSR----FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
              +L  D         +  + G++D  TG+      E Y T    T F        +L 
Sbjct: 500 RRPELWRDEIPFDRHGKVPCRSGLVDPRTGEIEPIRPEHYCTWVVDTEFDPAARCPLWLQ 559

Query: 472 LVSGYFES------EEVMDYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKY 523
           ++   F        +E++      +G A++     +  + + + G    GKS L+ ++  
Sbjct: 560 MLDDVFPDRTATVRKEIVATLQEVLGCAMVDVKSRQLTKALVLVGGSNVGKSGLLEVLGG 619

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
            FG+  +  A  S             +  +  +  +  V+    ++     A+ +K +  
Sbjct: 620 MFGDDPISVALDSL---------EGTHGKMPFVRRAPWVLHEAFDQRKWHFASGVKAIIT 670

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
           GD +   +  G            F   N     +    A   R IVI       +     
Sbjct: 671 GDPVEINVKNG-PIISGRVRAPIFWGTNYPPQFKESTRAIVNRMIVIHCRNVFDDHRLVG 729

Query: 644 AQKL-------------ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
             +L               K       W L+G++  + +G  + +P    +  +   +  
Sbjct: 730 VAQLASERGYDKPSSIVLAKERAGVLNWALEGLRRALDRG-SIAVPAEVRENADAIHKDA 788

Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
           +    +ID+C +    +         ++S +  +    DR   S  ++   +   G    
Sbjct: 789 NIVAGFIDECIEWDHEMRVPVPDFCAAFSVWWAENKGEDRSIPSNDSIGRAVTALGNERI 848

Query: 751 IKREKIEKEWKSKRIIKGLKLKPA 774
               +  ++    R + G+ L PA
Sbjct: 849 GLHARETRDMHR-RYLCGIALNPA 871


>gi|13095886|ref|NP_076775.1| helicase [Lactococcus phage bIL310]
 gi|15672011|ref|NP_266185.1| DNA primase [Lactococcus lactis subsp. lactis Il1403]
 gi|12722868|gb|AAK04127.1|AE006242_6 prophage ps1 protein 05, DNA primase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12831075|gb|AAK08428.1|AF323671_24 helicase [Lactococcus phage bIL310]
 gi|326405626|gb|ADZ62697.1| phage DNA primase [Lactococcus lactis subsp. lactis CV56]
          Length = 542

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 122/346 (35%), Gaps = 23/346 (6%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF- 477
           + +  +   +GI + +T Q    + +   T +  T + +               +     
Sbjct: 175 TEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMS 234

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
             +E++    + +  +  G    ++ + + G G  GK T  +LI    G + V + +A  
Sbjct: 235 GDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQ 294

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
             +           +L +++G   +I  ++  +   NA     +  GD +          
Sbjct: 295 FAE---------RFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPT 345

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
                +       N     RN  +  +RR +++PF+K     +  +  K +     +  +
Sbjct: 346 LAV-FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLE 404

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
           + LK   +   +    D P+      ++ +   D   A+++D  +   + +  +  ++  
Sbjct: 405 YVLKIALSLNFE--KFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISAL 462

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
           Y  + E E     K  + R     L    ++    ++ +++   + 
Sbjct: 463 YRAWCEDEG---VKPFTKREFENKLPD--YVKDQWKKTVQRPNSAG 503


>gi|268610895|ref|ZP_06144622.1| primase, putative [Ruminococcus flavefaciens FD-1]
          Length = 446

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 132/388 (34%), Gaps = 24/388 (6%)

Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
           R  V+  + A+   +  E  S+       L      +   +G+L++ TG+      +   
Sbjct: 65  RFKVKSTNIAEVAKRLSEDISLKIDIEGALKRQQYLINFMNGVLNILTGEFTTDRNKWIF 124

Query: 453 TKSTGTPFVEGEP---SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
                  ++E         F+  +      E   D   R +G  L      +  + + G 
Sbjct: 125 DYVFNVNYIEHCTERECPNFMKFIKTSAGIENK-DCIFRSIGFGLSSLTDVKCAVFLIGE 183

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
              GKSTL+ +I+ A     V N     +               I+L G ++ I  + + 
Sbjct: 184 SDGGKSTLLRIIESAVTPGLVSNISFQQL---------GDPHYTIQLQGKKLNISYDNSS 234

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
               N    K +   + +  R    N   +   +   F   N+    ++PD A +RR ++
Sbjct: 235 KALDNEHIFKSIVSCEKIEGRALRENP-VQFVPTAKLFFASNRPYVFKHPDQALYRRMVI 293

Query: 630 IPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           IPF+  I    +D     KL             + +K +I  G D  +            
Sbjct: 294 IPFEYSIPPDKQDKHLLDKL-MDERDAIFSRAARSLKEFIESGYDFKMSSKGEAYLRSRI 352

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE-LNYDRKRISTRTVTLNLKQKG 746
               + + +++D   + E        L ++Y  +  +  L+ D K     +V        
Sbjct: 353 TALHSVEEFLNDRTTLDEKGSVPVSVLYEAYKIWCNENALDADDKSEFKESV------LS 406

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPA 774
           +   I  +K+      K   KG++LK A
Sbjct: 407 YSPSIDFKKVGPRNSRKIGFKGIRLKTA 434


>gi|125622911|ref|YP_001031394.1| putative DNA primase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124491719|emb|CAL96638.1| Putative DNA primase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069649|gb|ADJ59049.1| putative DNA primase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 542

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 119/346 (34%), Gaps = 23/346 (6%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF- 477
           + +  +   +GI + +T Q    + +   T +  T + +               +     
Sbjct: 175 TEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMS 234

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
             +E++    + +  +  G    ++   + G G  GK T  +LI    G + V + +A  
Sbjct: 235 GDKELVSLLWQIISASTNGNYSYRKGAWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQ 294

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
             +            L +++G   +I  ++  +   NA     +  GD +          
Sbjct: 295 FAE---------RFVLSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPT 345

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
                +       N     RN  +  +RR +++PF+K     +  +  K +     +  +
Sbjct: 346 LAV-FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRTDVLE 404

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
           + LK   +        + P+      ++ +   D   A+++D  +   + +  +  ++  
Sbjct: 405 YVLKIALSL--NFDKFNEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISAL 462

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
           Y  + E E     K  + R     L    ++    ++ +++   + 
Sbjct: 463 YRAWCEDEG---VKPFTKREFENKLPD--YVKDQWKKTVQRPNSAG 503


>gi|257437684|ref|ZP_05613439.1| phage/plasmid primase, P4 family domain protein [Faecalibacterium
           prausnitzii A2-165]
 gi|257199991|gb|EEU98275.1| phage/plasmid primase, P4 family domain protein [Faecalibacterium
           prausnitzii A2-165]
          Length = 448

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 152/443 (34%), Gaps = 33/443 (7%)

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
            W  +  K+  +     +  K  +  L ++  D N         +      ++   ++ A
Sbjct: 26  PWVDSKGKVRETAYCQYLLEKHPMMCLKQKLFDQNGEVDEDALLYEVHSDLRDFVLDNLA 85

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
           K   Q L+A  I + T +        +  Q+G   L+    V   ++          +  
Sbjct: 86  KKEKQVLDALRIETYTPE-WKPQLDRIHLQNGTYFLDERGFVP--EKELCLNRLPVEYQP 142

Query: 463 GEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
             P+  ++L+ + G     E +      +G  L+   KAQ+ + + G GG GKS +  L+
Sbjct: 143 DAPAPTKWLEFLDGLL-IPEDILTLQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIGLLL 201

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
           K  FG     +     I  NR             L    +++  + N         IK +
Sbjct: 202 KKLFGE-ASHSESILRIETNRFAS--------ANLEYKLVMVDDDLNMVALPETRNIKSI 252

Query: 582 -TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
            T  D +                          +   +  D +WRR I+I     + +RD
Sbjct: 253 VTAEDRLCIERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILI----TVKDRD 308

Query: 641 A-----SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
                  F  +  ++       W L+G+   ++      I E  ++  E     +D    
Sbjct: 309 PARVDNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQ 368

Query: 696 WI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-NLKQKGFIGGIK 752
           ++          +  E S  L ++Y+++ E  L      +  +  +   LK  G  G   
Sbjct: 369 FMQASAYVRFKPDTEERSTYLYRAYTKWCEDNLES---PVPQKKFSQFLLKNAGKYGLTF 425

Query: 753 REKIEKEWKSKRIIKGLKLKPAF 775
            + IE ++   R  +G+ + PAF
Sbjct: 426 SKHIEGKY---RGFRGVCVHPAF 445


>gi|94266128|ref|ZP_01289842.1| Phage/plasmid primase P4-like [delta proteobacterium MLMS-1]
 gi|93453303|gb|EAT03746.1| Phage/plasmid primase P4-like [delta proteobacterium MLMS-1]
          Length = 925

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 133/377 (35%), Gaps = 35/377 (9%)

Query: 418 TSDLLDSSSRF-LGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSG 475
           T+D     +   L   +G L +E G+       L   +     F     P  +F   +  
Sbjct: 568 TNDTFFKDAHVGLATPEGFLKIEAGKIETVPLVLGHRQRIKIGFAPEDAPIPQFERFLKE 627

Query: 476 YFESE------EVMDYFTRCVGMALLG-GNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGN 527
            F+SE      +         G  L G   K Q+        G SGK T+   ++     
Sbjct: 628 TFQSEVPGEEAQQRGLLQEIAGAILTGCMPKFQKAAMFYDPFGRSGKGTMERFLRQLVPA 687

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
            +V      +  +            +  L G+R+ ++ E  E+  I AA  K +TGGD +
Sbjct: 688 SFVTAVSPFNWDKE---------YYVASLAGARLNVVGELPESKPIPAAAFKTVTGGDVL 738

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----DASF 643
           T R                  + N  +   +  +A++ R++++ F           D   
Sbjct: 739 TGRHPNFRP-ISFTNEAAHLFMSNHFITTSDHSEAFFTRWLLVEFPNSRLKSGLPIDPDL 797

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
           A+++          W +KG +  +++G       V  +     R+ T++ + +I D C++
Sbjct: 798 AERIIADELPGIAHWSMKGARRLLAQG-KFSGSTVHDRLMASWRRTTNSLEEFIHDVCEL 856

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
             +  E    L K Y  +  +     RK  S   V   L     +G     K   E    
Sbjct: 857 APDAHERRSELYKGYKYWCGENG---RKPFSKAKVKDLLAHNMALGIGHTVKDGYE---- 909

Query: 764 RIIKGLKLK--PAFESV 778
            I +G+KLK  P F  V
Sbjct: 910 -IFRGIKLKETPEFTKV 925


>gi|313112558|ref|ZP_07798221.1| phage/plasmid primase, P4 family protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|295103823|emb|CBL01367.1| phage/plasmid primase, P4 family, C-terminal domain
           [Faecalibacterium prausnitzii SL3/3]
 gi|310625124|gb|EFQ08416.1| phage/plasmid primase, P4 family protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 448

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 152/443 (34%), Gaps = 33/443 (7%)

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
            W  +  K+  +     +  K  +  L ++  D N         +      ++   ++ A
Sbjct: 26  PWVDSKGKVRETAYCQYLLEKHPMMCLKQKLFDQNGEVDEDALLYEVHSDLRDFVLDNLA 85

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
           K   Q L+A  I + T +        +  Q+G   L+    V   ++          +  
Sbjct: 86  KKEKQVLDALRIETYTPE-WKPQLDRIHLQNGTYFLDERGFVP--EKELCLNRLPVEYQP 142

Query: 463 GEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
             P+  ++L+ + G     E +      +G  L+   KAQ+ + + G GG GKS +  L+
Sbjct: 143 DAPAPTKWLEFLDGLL-IPEDILTLQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIGLLL 201

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
           K  FG     +     I  NR             L    +++  + N         IK +
Sbjct: 202 KKLFGE-ASHSESILRIETNRFAS--------ANLEYKLVMVDDDLNMVALPETRNIKSI 252

Query: 582 -TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
            T  D +                          +   +  D +WRR I+I     + +RD
Sbjct: 253 VTAEDRLCIERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILI----TVKDRD 308

Query: 641 A-----SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
                  F  +  ++       W L+G+   ++      I E  ++  E     +D    
Sbjct: 309 PARVDNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQ 368

Query: 696 WI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-NLKQKGFIGGIK 752
           ++          +  E S  L ++Y+++ E  L      +  +  +   LK  G  G   
Sbjct: 369 FMQATAYVRFKPDTEERSTYLYRAYTKWCEDNLES---PVPQKKFSQFLLKNAGKYGLTF 425

Query: 753 REKIEKEWKSKRIIKGLKLKPAF 775
            + IE ++   R  +G+ + PAF
Sbjct: 426 SKHIEGKY---RGFRGVCVHPAF 445


>gi|215488939|ref|YP_002331370.1| predicted DNA primase [Escherichia coli O127:H6 str. E2348/69]
 gi|215267011|emb|CAS11456.1| predicted DNA primase [Escherichia coli O127:H6 str. E2348/69]
          Length = 804

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/685 (12%), Positives = 181/685 (26%), Gaps = 93/685 (13%)

Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIH-PKTKKEYTWTTPPHRFKVEDTPLLSEED 169
             +  KK          +     Y      + P T  +           V   P      
Sbjct: 155 ASLADKKARWENGSDYVVFDRNVYGAQSYCYCPHTGAKAQNYAG-AVIDVGALPE--PAQ 211

Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229
                   +            I       +     +   ++ + L           +  W
Sbjct: 212 PPAKAAKSKAKKQRQRDAAAVIDADFDDLSAGPDNFLIADLRSALWFPSMLQKAWDNGAW 271

Query: 230 IPVVMAVHHE--TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
           I     +     T      +++   WS   +   +   + + D    +     A  ++++
Sbjct: 272 IEQGYRLASLKGTDFEDDARQLWVEWSLTAA---DGWPDEELDEVAAQRWNGLAPDKTSY 328

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
            ++F              R   AY + M +   +G  L         K D N VY ++  
Sbjct: 329 KAIFTDAQAQGWNNPGKWRAKAAYIEKM-APSTRGELLAQYYGNVCLKADGNMVYHYTGQ 387

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
           + +  A                         +++  R                + KS  +
Sbjct: 388 VWEHIA-------------------------DAELRRQLSQIFKDNGVPFTPYEVKSAIE 422

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-- 465
           ++             ++    +G  +G+ DLE  +      + ++T   G  + +     
Sbjct: 423 AMGMLLPLMG-----ETPRNLIGFANGVYDLEAQRFRPHCPDDWLTSHNGVEYTQPVKGE 477

Query: 466 -----SQEFLDLV-SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
                +  F   +        + M+     + M L      Q FI + G GGSGKS    
Sbjct: 478 TLKNNAPNFWRWLHHSAGGDFDKMERIKAALYMVLANRYDWQLFIEVTGAGGSGKSVFTG 537

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
           + +   G  +  +    D+   R              +G  ++ + +           IK
Sbjct: 538 IARMLTGELHATSGTMEDMDTAR---------ERASFVGKSLITLPDQATYTGSGPG-IK 587

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637
            +TGGD +     +   +             N+ +          RR ++ PF+  +   
Sbjct: 588 AITGGDVVRIDPKHEKPFHTVI-RAVVIATNNEPMRFTERQGGISRRRVIFPFNHEVPEA 646

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------Q 688
            RD     K+            ++G+       +D + P         +R          
Sbjct: 647 ERDPHLLDKI-KAELPVI----VRGLL------IDFEQPGKAKSLLIAQRDSAEALQVKN 695

Query: 689 GTDTYQAWID--------DCCDIGEN--LWEESHSLAKSYSEYREQEL--NYDRKRISTR 736
             D    +          +   +G+     E    L  +Y  Y E             + 
Sbjct: 696 DNDPMYGFCSYLLGLPNPEGMYMGDGRMAREPRIYLYHAYLAYLEAYGYQRTPTLPKFSG 755

Query: 737 TVTLNLKQKGFIGGIKREKIEKEWK 761
            +   LK  G     K+ K  K + 
Sbjct: 756 DLRDTLKAFGITLDSKKSKKGKRYN 780


>gi|9885251|emb|CAC04163.1| putative primase [Lactococcus phage phi31]
          Length = 492

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/398 (15%), Positives = 141/398 (35%), Gaps = 26/398 (6%)

Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
           D         F+ N  +  +     +K+      L+  +    ++    +S   +  ++G
Sbjct: 79  DKGIYETRADFFHNVIFWIEPSFSEAKSNQVIFHLKNMAKEVEST----ASRDLVPVKNG 134

Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF-ESEEVMDYFTR 488
           I + +T +    +     T +  T ++E   +         D +       EE++    +
Sbjct: 135 IYNKKTKKLEPFSNRYVFTSTIETEYIEEIEAPNINGWNVDDWLLDLMSGDEELVKLLWQ 194

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
            +  +L G    ++ I   G G  GK TL  LI    G Q V + + +   +        
Sbjct: 195 VISASLNGNYSYRKSIWFVGEGNDGKGTLQQLISNLVGLQNVASLKINQFSE-------- 246

Query: 549 ANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
              +L  + G  ++I  +      I+  +    +  G+ +         Y       T  
Sbjct: 247 -RFTLSMIEGKTVIIGDDVQAGLYIDDSSNFNSVVTGEPVFVEEKGKQPYVSF-YKKTVI 304

Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
              N    VRN  +  +RR+++IPF K  + +D ++A K +  +  E  ++ LK      
Sbjct: 305 QSTNGLPKVRNKTNGTYRRFLIIPFRKTFSAKDDNWAIKDDYIFREEVLQYVLKKAIELN 364

Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELN 727
            +    D P+      +E ++  ++   ++++     ++       L   Y E+      
Sbjct: 365 FE--RFDEPQATKVMMQEFKEKNNSIIEFVNEWFPQFKSNVLPVRFLWWLYQEWCRDSG- 421

Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
                ++ R    +L +       K++   K+    R+
Sbjct: 422 --YTALAKRQFDNDLSKNIPDNWQKKKIRPKDDFYLRM 457


>gi|315651057|ref|ZP_07904091.1| phage/plasmid primase [Eubacterium saburreum DSM 3986]
 gi|315486647|gb|EFU76995.1| phage/plasmid primase [Eubacterium saburreum DSM 3986]
          Length = 728

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 53/406 (13%), Positives = 137/406 (33%), Gaps = 30/406 (7%)

Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
           +  ++   +    + A           +++ +++  ++G+ +++T        ++  T+ 
Sbjct: 333 LTNDNLLNNVYNLMLADVDHMANEKNFNTNEKYINFKNGLYNIDTKALEPHNADILYTRQ 392

Query: 456 TGTPFVEGEPSQE---FLDLVSGYFE------SEEVMDYFTRCVGMALL---GGNKAQRF 503
             T ++E     E   F   +    +        +         G+A+    G    +  
Sbjct: 393 VNTEYIESYTITEYHTFTKFIRDLCKSADGGIDWQAYKSLQEVAGLAISNIYGHKTKKAV 452

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
                VG +GKS  + L+ +  G + + +    ++ +++         +       R+++
Sbjct: 453 FLYSPVGNTGKSQFLGLLGHLIGQENITSIPLQNMNEDKG------RFAFANAGLVRLIM 506

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDA 622
             + ++ D  +++  K +TGGD +      G             I  N   ++  +  + 
Sbjct: 507 NGDQSKADVKDSSIFKSVTGGDAIKVEAK-GKDIRTLVFKGLVVIACNDLPYIADDKGEH 565

Query: 623 WWRRYIVIPFDKPIANRDASFAQ-KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
            +RR  ++P    I  ++          K       W ++G+    +   +        +
Sbjct: 566 IYRRMYIVPCTHTIEEKERDPNILDKMIKELPAIANWGIEGLHRLRANNYNFTEIAAGAE 625

Query: 682 AKEEERQGTDTYQAWIDDC---CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
                R+ +DT  +++ D                 L  +Y++Y +      R+ +  R  
Sbjct: 626 VIANYRKNSDTVYSFLMDEGYIITKNPADKVSKQELLTAYNKYCQDNG---RQAVGVRQF 682

Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
              + +     G    K   +       +GLKL   F  V++   I
Sbjct: 683 RDRIVKL---TGYTIHKTRLKNILASYCEGLKLSDEFIPVNEGQAI 725


>gi|125974238|ref|YP_001038148.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC
           27405]
 gi|125714463|gb|ABN52955.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC
           27405]
          Length = 624

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 110/349 (31%), Gaps = 23/349 (6%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEV 482
                +   +GI ++      + + +  IT      +      +     +        E+
Sbjct: 292 EDYNRIAFNNGIYNIIDDSFTEHSPDFIITNRIPWDYNPNAYFELADKTLDKISCNDAEI 351

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                  +G      N+  +   + G   +GKST ++++    G   +   +  ++    
Sbjct: 352 RSVLEELIGYTFYRRNEIGKAFILTGEKQNGKSTFLDMVTTLIGISNIAALDLKEL---- 407

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                        L G    I  +  +      +  K++  GD + A     + + +   
Sbjct: 408 -----GERFKTAELFGKLANIGDDIGDEFIAEPSMFKKLVTGDRVNAERKGKDPF-DFNN 461

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK----LETKYTLEAKKW 658
                   N    V++   A  RR ++IPF       D  F       L TK ++E    
Sbjct: 462 YSKLLFSANNVPRVKDKTGAVQRRLLIIPFKAKFTADDPDFRPDIKYELRTKESMEYLIL 521

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
                   I +              +E  +  +    + ++     EN  E + ++ K+Y
Sbjct: 522 LGLKGLKRILQNKKFTKSIQVEHELKEYEKTNNPIIEFYEEYETKVEN--EPTKNVYKNY 579

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
            E+    LN + + +S    +  + ++    G K    + + K  RI  
Sbjct: 580 LEFC---LNNNLQPLSHIEFSRQITKR---FGYKTIDKKIDGKKYRIFV 622


>gi|94988182|ref|YP_596283.1| DNA primase [Streptococcus phage 9429.1]
 gi|94990062|ref|YP_598162.1| DNA primase [Streptococcus phage 10270.1]
 gi|94993974|ref|YP_602072.1| DNA primase [Streptococcus phage 10750.1]
 gi|94541690|gb|ABF31739.1| DNA primase [Streptococcus phage 9429.1]
 gi|94543570|gb|ABF33618.1| DNA primase [Streptococcus phage 10270.1]
 gi|94547482|gb|ABF37528.1| DNA primase [Streptococcus phage 10750.1]
          Length = 491

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 124/384 (32%), Gaps = 22/384 (5%)

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
           K+ K      +      N  +         S++                R++  ++GI D
Sbjct: 84  KDYKFAYKLIHILQPTFNETKCRNVLFMLASMDRKYGAMDFEPEFQDVRRYVLVKNGIYD 143

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDYFTRCVG 491
               + +          +  T  +   P            +       ++++    + V 
Sbjct: 144 KYKRKLLPFDYRFINFSTIETELIPNAPLPTIDGWDVESWLLDLMSGDKDLVKLLWQVVA 203

Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
            +L G    ++ I   G G  GK T   +I    G + V   + +   +           
Sbjct: 204 ASLNGNYSYRKSIWFVGNGNDGKGTFQQMISNLVGFKNVAPLKLNQFSE---------RF 254

Query: 552 SLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
            L  + G  ++I  +      ++  +    +  G+ ++      N Y       T     
Sbjct: 255 GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYMAI-FKKTVIQST 313

Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
           N     +N  +  +RR I+IPF K  ++++ ++A K +     E  ++ L   KA     
Sbjct: 314 NGMPSFKNKSNGTYRRIIIIPFKKTFSSKEDNWAIKDDYINRKEVLEYVL--WKAINIDF 371

Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730
                P+   +     ++  +T  A+IDD  +   +    +  L   Y E+ +   +   
Sbjct: 372 DRFSEPKATQERMHAFKRDNNTILAFIDDWFERFTSTVLPTRFLWWLYKEWCKDNGHT-- 429

Query: 731 KRISTRTVTLNLKQKGFIGGIKRE 754
             +   T    L      G +K++
Sbjct: 430 -PLKQSTFENELSTNIPDGWVKKK 452


>gi|212638502|ref|YP_002315022.1| phage associated DNA primase [Anoxybacillus flavithermus WK1]
 gi|212559982|gb|ACJ33037.1| Phage associated DNA primase [Anoxybacillus flavithermus WK1]
          Length = 620

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 59/474 (12%), Positives = 145/474 (30%), Gaps = 39/474 (8%)

Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
               DA+ + + + +           K      ++    +     K     + FL     
Sbjct: 166 YELDDAFIEEL-AHFIDEFVFGEPLGKELIHVIESVNQTYEK---KKKGQAVQFLNEKDI 221

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG------SIFSIT 418
            +         + K  +   ++   D+   N  +  +       L+         +F I 
Sbjct: 222 VMTSEVLVSRLDIKYYQQKLYFKQDDHYVHNDNKLLREIDKLIKLKPNQHKQLIELFKIK 281

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-F 477
           ++ ++     +    G + ++ G+ ++              + +G   +     +  +  
Sbjct: 282 AEYIEEQDFPIKLPGGYI-IDDGEVIEADYGFTPYY-LDVQYQDGAYDEHVDQFLDFFTM 339

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEAS 536
             +++        G  L+  +        +G  G +GKST + +I    G         S
Sbjct: 340 NRKDLRMVIEEMFGHILMTHSFPHIVFFFQGHKGNNGKSTFLKMINEFAGELA------S 393

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
            +  N   +A      +  L G  + I  + + +    +   K +  GD +  R  Y   
Sbjct: 394 QLTLNDFNDATS----VAFLEGKLVNIGDDIDASYMEQSKNFKTLASGDPIMVRPIYQQP 449

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEA 655
           + +     T     N     ++      RR +VIP D  +  RD    +KL +       
Sbjct: 450 F-KLKNRATLIFTCNDMPTFKDKSGGIARRVVVIPCDNHVKRRDLDLDRKLSSPNAKSYI 508

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHS 713
            +  L+G++   + G  +          +E    +D+  A+  +     +       +  
Sbjct: 509 LRLALEGIQRIKANGGKLTDSLTIQAKTKEYFIASDSVLAFESENQHLILNR----PAKD 564

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
           +  +Y  +  +      + +        L   G+    + +  +   K  R  +
Sbjct: 565 VYNAYVAFCFENG---LREVGKVEFGRRLANVGY----ETKVRKINGKPIRYYQ 611


>gi|284176401|ref|YP_003406676.1| phage/plasmid primase, P4 family [Haloterrigena turkmenica DSM 5511]
 gi|284018058|gb|ADB64003.1| phage/plasmid primase, P4 family [Haloterrigena turkmenica DSM 5511]
          Length = 1285

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 121/360 (33%), Gaps = 30/360 (8%)

Query: 425  SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG---EPSQEFLDLVSGYFESEE 481
             +  +   +G+ D + G+  +   +   T+S    + E           + +    + E 
Sbjct: 674  DADLVCLGNGVYDFDAGKLREHDPKYLFTQSIPWDYPENPESAECPAIEEFMDDITQREA 733

Query: 482  VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ-YVINAEASDIMQ 540
                    +G ALL     + F+ + G G +GK+T  N+++   G Q  +  AE ++I +
Sbjct: 734  DKLTMYEFIGHALLPHYDYKAFMVLFGPGDNGKTTFYNVVEQLLGGQSNISAAEMAEIAE 793

Query: 541  NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
            NR             ++G+   I +E N     +   IK+MTGGD        G    E 
Sbjct: 794  NRFRAET--------VIGNYANIAAEMNARKIDDMGMIKKMTGGDTFQVEPK-GKPAYEV 844

Query: 601  PASFTPFIVPNKHLFVRNPDDAWWRRYIVI--------------PFDKPIANRDASFAQK 646
              + T     N+   +         R   I              PF+K    +    A+ 
Sbjct: 845  QNTATMMFGCNEPPVLPERGRKIATRLYPIELPYEFKNDPSPNNPFEKQGRPQSELLAEI 904

Query: 647  LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
                         ++G    I +  +  +PE   +  E   Q +D  + +   C +    
Sbjct: 905  TTESELQGLLVKAIEGAHRLIDRNGEFSLPETAEERMELYEQHSDPIKQFSVKCLENESG 964

Query: 707  LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
                   +   Y E+  +    D K  S       L+Q  F     R + + + + K  +
Sbjct: 965  KRVAKDDVYNVYVEFCRET---DAKVTSKSVFFKKLRQTTFSYSETRPRADGDGERKLYL 1021


>gi|124486496|ref|YP_001031112.1| hypothetical protein Mlab_1684 [Methanocorpusculum labreanum Z]
 gi|124364037|gb|ABN07845.1| phage/plasmid primase, P4 family [Methanocorpusculum labreanum Z]
          Length = 606

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 99/508 (19%), Positives = 176/508 (34%), Gaps = 57/508 (11%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
             +D  N   F     G+ +Y   +  W+    N+       L K+   +   L     D
Sbjct: 115 SLNDEGNAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKVLRLVGKSLEQEL-D 173

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
            +      E+  +         N     +N  +    +   +        S       S 
Sbjct: 174 YWKRRAAAENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEA-----SD 228

Query: 426 SRFLGEQDGILDLETGQKVK-----PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
            R++  ++G LD  TG+ +        +E Y        +  G  S  F+D +   F+  
Sbjct: 229 GRYITCKNGALDCRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDN 288

Query: 481 --------------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
                         E+   F R +G  L  GN  Q  I + G G +GKST +++++  FG
Sbjct: 289 VSGLSEEERTLQMMELGRCFLRLLGYLLFPGNPEQVIIFLWGKGSNGKSTTIDVLREIFG 348

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE----NDEINAAKIKQMT 582
           ++    +       +    A      + R +  R+++ISE ++       I+A  +K +T
Sbjct: 349 SEMSEASVRELYAGSEDRPASG----VARSLSKRVMLISEASDEESRGGRISADTVKALT 404

Query: 583 GGDCMTARLNYGNTYSESPAS---FTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIAN 638
           G D +T+R  + + Y +S       TP  V N+     +  D A  RR   IPF    A 
Sbjct: 405 G-DAVTSR--FRDMYEKSRPQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAG 461

Query: 639 RDASFAQKL-ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
            + +   +                 + AY  +GL +  P  C   + E   G     A+I
Sbjct: 462 DERARDIRECLLAERDAVFSMVADELIAYTKEGL-LPQPAFCASTQNELLAGF-EVSAFI 519

Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQEL---------NYDRKRISTRTVTLNLKQKGFI 748
           ++C +  E        L ++Y  +  +                  S       L +K   
Sbjct: 520 EECVEKSETGRVSRLELEEAYISWCARHDIPVGLAKIQMPGYDEYSQVNFRQGLSEKEKR 579

Query: 749 GGIKREKI----EKEWKSKRIIKGLKLK 772
           G  K  ++    E+   S+R  K  +LK
Sbjct: 580 GLFKGMRVYGFEEQRTNSQRYFK-CRLK 606


>gi|218442614|ref|YP_002380934.1| P4 family phage/plasmid primase [Cyanothece sp. PCC 7424]
 gi|218174972|gb|ACK73704.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7424]
          Length = 1145

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 90/629 (14%), Positives = 187/629 (29%), Gaps = 97/629 (15%)

Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKG----KEIARRWSKQ-GSTY 260
               +   ++   +      H         V      S +       IA  +S+   S Y
Sbjct: 360 DEFVLRKGITALKQLLEQSEHGYRWKAKQIVAEHGNDSDEAIEKIFSIAVAYSRTIPSQY 419

Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
             E   + W T          +         Y     IP           + ++  + + 
Sbjct: 420 KLEEETFFWATIRNSLGELDPEAFRAKLKARYGDTPSIPTKSGQDLKVPDWAQSSIAKWL 479

Query: 321 KGHFL----YTADTKAWYKKDKNNVYIWSL----TLDKITASIMNFLVSMKEDVFDLSEE 372
              +     +  D + W++    N  IW+      + +I  + +  L  + E +      
Sbjct: 480 AERYRPLLAFNTDIEEWFRYSAINEGIWTKDPKYYIWQIIITELETLADIHEQL------ 533

Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
               ++  K P++        + + +                  +     D     L   
Sbjct: 534 ----HEKKKRPKYGSGFISGIEMLLKA----------------YLPVRGWDEQPGLLPFI 573

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVG 491
           +G+ +L TG+ V       +T      +  G   +  LD +       E ++++    + 
Sbjct: 574 NGVKNLTTGEFVPHAPGFRLTWCLPYEYSPGATCEPILDWLHSMTNGDEAIIEFIRAHLN 633

Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
             + G +  Q ++ + G GG+GK TL  L     G++  ++    ++ +NR         
Sbjct: 634 AIITGRSDIQSYLELIGPGGTGKGTLTRLASALTGDRNTVSTTLRNLEENR--------F 685

Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
              RL  +R+VII++  +    + + +K +TGGD +     +              I  N
Sbjct: 686 DTSRLYQARLVIITDAEKWGG-DVSVLKAITGGDKLRFEQKFKQPLDGFYYKGRVMICAN 744

Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL--------ETKYTLEAKKWFLKGV 663
           + +   +      RR   +     I  +      +L           Y      W L   
Sbjct: 745 EPIQSADYTSGLERRRQTVYMTNKIPLKSQRKLIELSNSGVEGEFVPYLPGLMNWVLD-- 802

Query: 664 KAYISKGLDVDIPEVCLKAK-------EEERQ----GTDTYQAWIDDCCDIGENLWE--- 709
                  +     E  ++         +  +      T+    W+D    +  +      
Sbjct: 803 -------MSPTDVERIIRETPTAHHQFQYYKAQILTETNPIADWLDTSVVVRPDYRTAIG 855

Query: 710 --------ESHSLAK-----SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
                   ES +         Y+ Y E       K +S R     L     +  +  +  
Sbjct: 856 VASRDKSSESPNWYLNTDRWLYANYAEYCHGSGAKPVSVRRFVNLLHDL-AVNQLNLKVT 914

Query: 757 EKEWKSKRIIKGLKLKPAFESVDDNSNII 785
           +   +    + GLKL+      DD+  II
Sbjct: 915 KGRDRMGSYVLGLKLRS---PDDDDPLII 940


>gi|229099129|ref|ZP_04230063.1| hypothetical protein bcere0020_43520 [Bacillus cereus Rock3-29]
 gi|228684357|gb|EEL38301.1| hypothetical protein bcere0020_43520 [Bacillus cereus Rock3-29]
          Length = 714

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 107/771 (13%), Positives = 237/771 (30%), Gaps = 88/771 (11%)

Query: 30  PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS--KDEKTANTFKDTFEI 87
                 W       E+  +    G GF+    E      DID   ++ +  +  KD    
Sbjct: 4   SNNRNTWSTFEEVLEEYQQGDYSGIGFMF-SKEDAFIGIDIDHCVQEGEFTDLAKDIMT- 61

Query: 88  LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
           +  +          I I  +            ++    L+I   G+YF            
Sbjct: 62  IVPSYTEYSPSGQGIHIIAKGKLPLRGPGTGKKNPALGLEIYRHGRYFTFT--------- 112

Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVK--DKKSIIPSKTWTNNNNRQY 205
                  +   VE++    +   +   +  +    P      +KS I   +      R +
Sbjct: 113 ---ANSINNLPVEESTENLKVLFQKYIEKKEVPAAPKTLYVSRKSNISILSDAELWERMF 169

Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGSSKGKEIARRWSKQGSTY 260
            ++   A    F     NG H       MA+ +       + ++K   + R  +     +
Sbjct: 170 DSKSGAAIKDLFQGILINGDHSS---TDMALANHLAFWTDKDAAKMDSMFRESALIRDKW 226

Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
           D      K  + D    G    +++                   S  SD      ++   
Sbjct: 227 D------KPHSSDGRTYGQMTIEKA--------------IESTHSSVSD------YNRKN 260

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
             H+L     K    K  +     +         IM   +  +  +     E  D    +
Sbjct: 261 DAHYLVNEQGKTTGIKKGSWWSENNG-RTSFLHHIMVEYILQENKIVRFPNEDGDIYVYN 319

Query: 381 KSPRFW--FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS-SSRFLGEQDGILD 437
           K+   +    T  + +++  +++     Q  E        S +++  S  ++  ++G+L 
Sbjct: 320 KATGIYELDKTCRKLRSLVRDAEILKRNQVREVQEYIMDMSPVVNEESKNYIAVENGLLH 379

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV--MDYFTRCVGMALL 495
           L++ +  + T E+++TK   T +            +        +  +       G  L 
Sbjct: 380 LDSMEFKEFTSEVFVTKKIPTKYNSNVFDSFVERTLMKV-SDGHLPTIKNIHEMFGAVLY 438

Query: 496 GGNKAQRFIHIRG-VGGSGKSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553
                 +  ++ G    +GKST++ +I+  F   + +       + +N    +       
Sbjct: 439 PTLLVPKMFYLYGRSAHNGKSTVLYMIQKTFNSGENISAISPQKLAENAFAGSS------ 492

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             + G    I+ +  +    ++  +K +  G  +      G        +       N +
Sbjct: 493 --IYGKLANIVDDQPDEVIRDSGTLKTIITGGYVDIEYK-GKGSQTVQMNTVCITASNHY 549

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK------YTLEAKKWFLKGVKAYI 667
              R   +   +R  ++PFD    N     ++    K            K  +  +K   
Sbjct: 550 PNFREHGNQINKRLHILPFDHNFMNDPDRISEMESMKQLETVSAREYVLKLAVDAIKEMK 609

Query: 668 SKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH--SLAKSYSEYREQ 724
            + +D +   E   +AK++  +  D    +     +  +  +EE        +Y E+ + 
Sbjct: 610 QRTVDILTYNEKAEEAKQKFMEYNDPLADFF---FEYDKQFFEEVRGTDALNAYDEWCKD 666

Query: 725 ELNYDRKRISTRTVTLNL-KQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
              + +  +  +    ++  +       K  KI   WK+   +KG K K A
Sbjct: 667 N--HVQYPLGQKQFKDSVCTKYEMEWKDKMIKINGSWKT---VKGFKTKSA 712


>gi|331659981|ref|ZP_08360919.1| primase [Escherichia coli TA206]
 gi|315296988|gb|EFU56268.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 16-3]
 gi|331053196|gb|EGI25229.1| primase [Escherichia coli TA206]
          Length = 804

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 83/643 (12%), Positives = 173/643 (26%), Gaps = 91/643 (14%)

Query: 152 TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT 211
                  V   P      +       +            I       +     +   ++ 
Sbjct: 196 YAGAVIDVGALPE--PAQLPAKAAKSKAKKQRQRDAAAVIDADFDDLSAGPDNFLIADLR 253

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHE--TRGSSKGKEIARRWSKQGSTYDEENFNYKW 269
           + L           +  WI     +     T      +++   WS   +   +   + + 
Sbjct: 254 SALWFPSMLQKAWDNGAWIEQGYRLASLKGTDFEDDARQLWVEWSLTAA---DGWPDEEL 310

Query: 270 DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329
           D    +     A  ++++ ++F              R   AY + M +   +G  L    
Sbjct: 311 DEVAAQRWDGLAPDKTSYKAIFTDAQAQGWNNPSTWRAKAAYIEKM-APSTRGELLAQYY 369

Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389
                K D N VY ++    +  A                         +++  R   + 
Sbjct: 370 GNVCLKADGNMVYHYTGQGWEHIA-------------------------DAELRRQLSHI 404

Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
                      + KS  +++             ++    +G  +G+ DLE  +      +
Sbjct: 405 FKDNGVPFTPYEVKSAIEAMGMLLPLMG-----ETPRNLIGFANGVYDLEAQRFRPHCPD 459

Query: 450 LYITKSTGTPFVEGEP-------SQEFLDLV-SGYFESEEVMDYFTRCVGMALLGGNKAQ 501
            ++T   G  + +          +  F   +        + M+     + M L      Q
Sbjct: 460 DWLTSHNGVEYTQPVKGETLKNNAPNFWRWLHHSAGGDFDKMERIKAALYMVLANRYDWQ 519

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
            FI + G GGSGKS    + +   G  +  +    D+   R              +G  +
Sbjct: 520 LFIEVTGAGGSGKSVFTGIARMLTGELHATSGTMEDMDTAR---------ERASFVGKSL 570

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
           + + +           IK +TGGD +     +   +             N+ +       
Sbjct: 571 ITLPDQATYTGSGPG-IKAITGGDVVRIDPKHEKPFHTVI-RAVVIATNNEPMRFTERQG 628

Query: 622 AWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
              RR ++ PF+  +    RD     K+            ++G+       +D + P   
Sbjct: 629 GISRRRVIFPFNHEVPEAERDPHLLDKI-KAELPVI----VRGLL------IDFEQPGKA 677

Query: 680 LKAKEEER---------QGTDTYQAWID--------DCCDIGEN--LWEESHSLAKSYSE 720
                 +R            D    +          +   +G+     E    L  +Y  
Sbjct: 678 KSLLIAQRDSAEALQVKNDNDPMYGFCSYLLGLPNPEGMYMGDGRMAREPRIYLYHAYLA 737

Query: 721 YREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
           Y E             +  +   LK  G     K+ K  K + 
Sbjct: 738 YLEAYGYQRTPTLPKFSGDLRDTLKAFGITLDSKKSKKGKRYN 780


>gi|268592737|ref|ZP_06126958.1| putative P4-specific DNA primase [Providencia rettgeri DSM 1131]
 gi|291311513|gb|EFE51966.1| putative P4-specific DNA primase [Providencia rettgeri DSM 1131]
          Length = 801

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/670 (13%), Positives = 189/670 (28%), Gaps = 104/670 (15%)

Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210
                   V+  P       E      +         +             +    +   
Sbjct: 195 YYEGEVINVDALP-----LPEIALVSKKGKATSDTTTQSEDFADFDDLEALDECLISDIR 249

Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHHE--TRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           +A       +  +  H +WI     +     T    + + +   WS   + Y  +    +
Sbjct: 250 SALWHPEMLKQAHNDH-QWISNGYRLASLKNTELEDEARTLWVEWSLTAADYYPDEQLDE 308

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328
                ++         S++  +F+   KL  K   A R        M +  +        
Sbjct: 309 VAGNRWD--NALEPNGSSYRGIFFEAQKLGWKNPAALRMKAENIGKMAASERGELLAEYY 366

Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388
                  +D   VY ++  + +    I+                        +  + + +
Sbjct: 367 GQIRLKDEDSERVYYYNGKIWEYLPDIV---------------------LRRQLAKMFID 405

Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
            D    N   ++  ++   ++             ++S   +G  +G+ DL        + 
Sbjct: 406 NDATYTNNAISAAVEAMKLAIPVMG---------ETSRFLIGFANGVYDLTEKSFRPHSA 456

Query: 449 ELYITKSTGTPFVEGEPS-------QEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKA 500
             ++T      F    P+         F   +S     + E M+     + M L      
Sbjct: 457 IDWLTNHNNIEFTSPLPNENYQDHAPNFYKWLSQSSGGKNEYMERIKAALFMVLANRYDW 516

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
           Q F+ I G GGSGKS    +     G+    +    D+   R  ++          +G  
Sbjct: 517 QLFLEITGPGGSGKSVFTGIAALLAGHHNTASGSVRDLDIPRERDS---------FVGKS 567

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNP 619
           ++I+ +        A  +K +TGGD +     +   +          +  N         
Sbjct: 568 LIILPDQERYSGSGAG-LKAITGGDPVKVDPKHVRPFETVIEG--VVMATNNEPMRFNEH 624

Query: 620 DDAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
                RR ++ PF   +  +D      +K+            ++G+ A        +  +
Sbjct: 625 QGGIARRQVIFPFTSQVKEKDIDNQLLEKI-KAELPVI----VRGLLAEFD---KPEDAK 676

Query: 678 VCLKAKE------EERQGTDTYQAWIDDCCDIGENL--------------WEESHSLAKS 717
             L A+       + +Q T+    +    C   + L              +     L  +
Sbjct: 677 CLLLAQRNSAEALKVKQETNPLYGF----CSYLKALMLVNGMYMGTATPPFYPRTHLYHA 732

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
           Y  Y +   +  +  +S     L L       GI+  K       KR+ KG +       
Sbjct: 733 YLAYMDAHGH--KYVLSLTDFGLKLPNILKESGIELTK-------KRLKKGYRYNVGLTE 783

Query: 778 VDDNSNIIDF 787
             D   I DF
Sbjct: 784 DADEWIISDF 793


>gi|312901365|ref|ZP_07760645.1| phage/plasmid primase, P4 family protein [Enterococcus faecalis
           TX0470]
 gi|311291528|gb|EFQ70084.1| phage/plasmid primase, P4 family protein [Enterococcus faecalis
           TX0470]
          Length = 619

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 60/397 (15%), Positives = 136/397 (34%), Gaps = 25/397 (6%)

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
           K   +W N   +     +       A+  +   +  I  +L++++   +  ++  + L+ 
Sbjct: 245 KEDNYWINDQNKLLRKIDKRIKLLPAKWKQILDLLKIKGELIEAADFPIQFRNDFM-LDG 303

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNK 499
            + +  +   +        +      +   + ++     + ++       +G  L+    
Sbjct: 304 AEIIPMSTREFTPFFLDVDYDPDAYDKTVDEFLNFLVSDKKDLRIIVEELLGHILMTAGF 363

Query: 500 AQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
             +   + G  G +GKST + ++    G+          +  N   E      S++ L G
Sbjct: 364 PHKVFFLVGSSGANGKSTFLEMLNSFIGD----------LGLNLALEQFNDQTSVMELEG 413

Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
             + I  + +      +   K +  G+ +  R  Y   Y +     T     N+    ++
Sbjct: 414 KLVNIGDDIDAGYMEKSMNFKTLASGNTIMVRPIYSKPY-KLKNKATLIFTANEMPTFKD 472

Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKL-ETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
                 RR ++IP +  +   D    +KL             LK ++  I+ G  +   E
Sbjct: 473 KSGGIARRVVIIPCENKVKKADPKIDEKLSSDNAKSYLLNLALKAMERIINNGGQLSSSE 532

Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737
              K  EE    +D+   +I   C I EN+   +  +   Y +  E+      K  +   
Sbjct: 533 TVAKVTEEYFVESDSILTFIHQ-CGIDENM--TTKGVYDEYLKTCEESG---SKPYTQTK 586

Query: 738 VTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
            T  LK  G+    ++E+     K     K +++   
Sbjct: 587 FTQRLKSLGY----EKERRMIMGKRYFYYKKIEVNEE 619


>gi|167771872|ref|ZP_02443925.1| hypothetical protein ANACOL_03245 [Anaerotruncus colihominis DSM
           17241]
 gi|167665670|gb|EDS09800.1| hypothetical protein ANACOL_03245 [Anaerotruncus colihominis DSM
           17241]
          Length = 433

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 127/373 (34%), Gaps = 22/373 (5%)

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
              +L A       S  L   +  +   +G   ++         + Y        +    
Sbjct: 71  VVTNLLASIKLQAYSPPLPIETDRIHVANGTYFMDDSFTTD---KSYCNNRLTVAYNSDA 127

Query: 465 PSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
           P+ + +L  +S   ++E+V       +G  LL   K Q+ + + G GG GKS +  +++ 
Sbjct: 128 PAPKKWLQFLSELLQAEDV-PTLQEFLGYCLLPTTKGQKMLMLIGKGGEGKSRIGLVMRS 186

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G+    +   + I +           S   L    +++  + + +       IK +  
Sbjct: 187 LLGD----SMNTTSIQK-----VESNRFSRADLENKLLMVDDDMDMSALPKTNYIKSIVT 237

Query: 584 GDC-MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDA 641
            +C M        +Y                  + +  D ++RR IV+   D+P    D 
Sbjct: 238 SECKMDMERKGVQSYQSQLYVRFLCFGNGALTALHDKSDGFFRRQIVLTTKDRPAGRADD 297

Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI--DD 699
            F      +       W L+G+   I       I     +  E  ++ ++    ++  + 
Sbjct: 298 PFLVDKLLREKEGIFLWCLEGLHRLIRNNYQFSISGKARENMEAVKRSSNNVIEFLQSEG 357

Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-KIEK 758
                 +    S ++ ++Y+ + +      +K +S   V+  L Q   +  ++    +  
Sbjct: 358 YIRFRADSEASSKAIYEAYTRWCDDN---AQKPMSANRVSSELAQNERLYNVEATNNVRI 414

Query: 759 EWKSKRIIKGLKL 771
             K  R   G+++
Sbjct: 415 GGKRVRGFVGIEV 427


>gi|94990320|ref|YP_598420.1| DNA primase [Streptococcus phage 10270.2]
 gi|94543828|gb|ABF33876.1| DNA primase [Streptococcus phage 10270.2]
          Length = 493

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/466 (13%), Positives = 135/466 (28%), Gaps = 48/466 (10%)

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN---- 377
               Y          +      WS    K+ A    +L    +DV +LSE          
Sbjct: 2   DFEFYREKLNEEPGIEPGKPKTWSAIKSKLVAYRREWLEEAGKDVKNLSELAVAIGINKF 61

Query: 378 ----------------------KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
                                 K+ K      +      N  +         S++     
Sbjct: 62  LHVITLENGKVAIYDPDQGYYIKDYKFAYKLIHILQPTFNETKCRNVLFMLASMDRKYGA 121

Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL----- 470
                      R++  ++GI D +    +    +     +  T  +   P          
Sbjct: 122 MDFEPEYHDVRRYILVKNGIYDKKNKALLPFDHQFINFSTIETELIPNAPLPTIDGWDVE 181

Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
             +       ++++    + V  +L G    ++ I   G G  GK T   +I    G + 
Sbjct: 182 SWLLDLMSGDKDLVQLLWQVVAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKN 241

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMT 588
           V   + +   +            L  + G  ++I  +      ++  +    +  G+ ++
Sbjct: 242 VAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVS 292

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648
                 N Y       T     N     +N  +  +RR I+IPF K  ++ + ++A K +
Sbjct: 293 IEKKGENPYMAI-FKKTVIQSTNGMPVFKNKSNGTYRRIIIIPFKKTFSSAEDNWAIKDD 351

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
                E  ++ L   K+          P+V      E ++  +T   ++++  +  E+  
Sbjct: 352 YINRKEVLEYVL--WKSINLDFDKFYEPKVTQDRMREFKEENNTILKFLNEYLEDVESTR 409

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
                L   Y  +  +      K          L      G  K +
Sbjct: 410 LPVRFLWDVYQSWCTENGVTKPK---KSNFEKELAINLPDGWEKTK 452


>gi|283795092|ref|ZP_06344245.1| phage/plasmid primase, P4 family protein [Clostridium sp. M62/1]
 gi|291076734|gb|EFE14098.1| phage/plasmid primase, P4 family protein [Clostridium sp. M62/1]
          Length = 431

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 127/373 (34%), Gaps = 22/373 (5%)

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
              +L A       S  L   +  +   +G   ++        K     + T   +    
Sbjct: 69  VVTNLLASIKLQAYSPPLPIETDRIHVANGTYFMDGSFT--ADKSYCNNRLT-VAYNPNA 125

Query: 465 PSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
           P+ + +L  +S   +  E +      +G  LL   K Q+ + + G GG GKS +  +++ 
Sbjct: 126 PAPKKWLQFLSELLQ-PEDIPTLQEFLGYCLLPTTKGQKMLMLIGKGGEGKSRIGLVMRS 184

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G+    +   + I +           S   L    +++  + + +       IK +  
Sbjct: 185 LLGD----SMNTTSIQK-----VESNRFSRADLENKLLMVDDDMDMSALPKTNYIKSIVT 235

Query: 584 GDC-MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDA 641
            +C M        +Y                  + +  D ++RR IV+   D+P    D 
Sbjct: 236 SECKMDMERKGVQSYQSQLYVRFLCFGNGALTALHDKSDGFFRRQIVLTTKDRPAGRADD 295

Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI--DD 699
            F      +       W L+G++  I       I     +  E  ++ ++    ++  + 
Sbjct: 296 PFLVDKLLREKEGIFLWCLEGLRRLIGNNYQFSISGKARENMETVKRSSNNVIEFLQSEG 355

Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-KIEK 758
                 +    S ++ ++Y+ + +      +K +S   V+  L Q   +  ++    +  
Sbjct: 356 YIRFRADSEASSKAIYEAYTRWCDDN---AQKPMSANRVSSELAQNERLYNVEATNNVHV 412

Query: 759 EWKSKRIIKGLKL 771
             K  R   G+++
Sbjct: 413 GGKRVRGFMGIEV 425


>gi|273809764|ref|YP_003344884.1| primase [Streptococcus phage ALQ13.2]
 gi|224812516|gb|ACN64909.1| primase [Streptococcus phage ALQ13.2]
          Length = 506

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 122/359 (33%), Gaps = 22/359 (6%)

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           + ++  E  +++           RF+  ++GI D    + +    +     +  T  VE 
Sbjct: 124 NMSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDHKFINFSTIETELVEN 183

Query: 464 EPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
            P            +        E+++   + +  +L G +  ++ I + G G  GK T 
Sbjct: 184 APKPIINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTF 243

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-A 576
             LI    G + V   + +   +            L  + G  ++I  +      ++  +
Sbjct: 244 QQLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESS 294

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
               +  G+ ++      N Y       T     N     +N  +  +RR ++IPF K  
Sbjct: 295 NFNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTF 353

Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
              D ++A K +     E  ++ L   KA        + P+   +  +E ++  +T   +
Sbjct: 354 GINDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFNEPKAAQERMQEFKEENNTVYKF 411

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           +++      +       L   Y  +  +  +   K          L Q   +G IK  +
Sbjct: 412 LNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWIKDRQ 467


>gi|293400200|ref|ZP_06644346.1| putative primase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306600|gb|EFE47843.1| putative primase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 433

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 56/370 (15%), Positives = 125/370 (33%), Gaps = 22/370 (5%)

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
           +L A       S  L   +  +   +G   ++       +   Y        +    P+ 
Sbjct: 74  NLLASIKLQAYSPPLPIETDRIHVANGTYFMDGSFSTDRS---YCNNRLTVTYNPDAPTP 130

Query: 468 E-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
           + +L  +S   +  E +      +G  LL   K Q+ + + G GG GKS +  +I+   G
Sbjct: 131 KKWLQFLSELLQ-PEDIPTLQEFLGYCLLPTTKGQKMLMLIGKGGEGKSRIGLVIRSLLG 189

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
           +    +   + I +           S   L    +++  + + +       IK +   +C
Sbjct: 190 D----SMNTTSIQK-----VESNRFSRADLENKLLMVDDDMDMSALPKTNYIKSIVTSEC 240

Query: 587 -MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFA 644
            M        +Y                  + +  D ++RR IV+   D+P    D  F 
Sbjct: 241 KMDMERKGVQSYQSQLYVRFLCFGNGALTALHDKSDGFFRRQIVLTTKDRPAGRADDPFL 300

Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI--DDCCD 702
                +       W L+G+   I       I     +  E  ++ ++    ++  +    
Sbjct: 301 VDKLLREKEGIFLWCLEGLHRLIGNNYQFSISGKAKENMETVKRSSNNVIEFLQSEGYIR 360

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-KIEKEWK 761
              +    S ++ ++Y+ + +      +K +S   V+  L Q   +  ++    +    K
Sbjct: 361 FRADSEASSKAIYEAYTRWCDDN---AQKPMSANRVSSELAQNERLYNVEATNNVHVGGK 417

Query: 762 SKRIIKGLKL 771
             R   G+++
Sbjct: 418 RVRGFMGIEV 427


>gi|9632452|ref|NP_049424.1| putative primase [Streptococcus phage DT1]
 gi|4530172|gb|AAD21912.1| putative primase [Streptococcus phage DT1]
 gi|37781293|gb|AAP36687.1| putative primase [Streptococcus phage kappa3]
          Length = 504

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 122/359 (33%), Gaps = 22/359 (6%)

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           + ++  E  +++           RF+  ++GI D    + +    +     +  T  VE 
Sbjct: 122 NMSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDHKFINFSTIETELVEN 181

Query: 464 EPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
            P            +        E+++   + +  +L G +  ++ I + G G  GK T 
Sbjct: 182 APKPIINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTF 241

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-A 576
             LI    G + V   + +   +            L  + G  ++I  +      ++  +
Sbjct: 242 QQLISNLVGLKNVAPLKINQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESS 292

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
               +  G+ ++      N Y       T     N     +N  +  +RR ++IPF K  
Sbjct: 293 NFNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTF 351

Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
              D ++A K +     E  ++ L   KA        + P+   +  +E ++  +T   +
Sbjct: 352 GINDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFNEPKATQERMQEFKEENNTVYKF 409

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           +++      +       L   Y  +  +  +   K          L Q   +G IK  +
Sbjct: 410 LNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWIKDRQ 465


>gi|255505814|ref|ZP_05348281.3| phage/plasmid primase, P4 family domain protein [Bryantella
           formatexigens DSM 14469]
 gi|255265791|gb|EET58996.1| phage/plasmid primase, P4 family domain protein [Bryantella
           formatexigens DSM 14469]
          Length = 586

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 139/398 (34%), Gaps = 34/398 (8%)

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGEQDGILDLETGQKVKPTKELYITKST 456
           ++S  +S    L +          L++    ++  ++G  D+   + V+   +  +    
Sbjct: 202 KSSTIQSIYNLLVSQPQIQKKFSDLNNQPTHWINFKNGYFDVIEWKMVEHDTKYLMINQI 261

Query: 457 GTPFVEGEPSQEFLD------LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
              F   +  +           +      E     F + +G  +    + Q+F+ I+G G
Sbjct: 262 PYSFYPEQHEEIQKQENITKHYLESSLPDEADQQTFWQYLGYCMTTDTRFQKFLMIKGKG 321

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
           G+GKS  + LI++  G +   +    D+ +               L G ++   ++    
Sbjct: 322 GTGKSVAIALIQHIVGIENCSSISLQDLNKRFYATG---------LFGKQLNACADIPCT 372

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIV 629
              +   IK+  G D +       +   +  +        N+    + +  +A++RR +V
Sbjct: 373 AMQSVDIIKKAVGEDTLLYEKKGQDPT-QFHSYAKLLFSANEMPLNLDDKTNAYYRRLLV 431

Query: 630 IPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
           +  ++ +  + +D    +K+  K    A    +  +K   +            +  EE  
Sbjct: 432 LDMNRLVSTSEKDTMLKEKIY-KEADYAIHMGIAALKQLYADN-HFCESLHSRECIEELY 489

Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +  D+ +A++D+     +    +   L + Y+++ E+    DR+          +  KG+
Sbjct: 490 RSADSVKAFLDEKICRQKGAKLKRSELYQLYTKFCEEN---DRQAHGKSVFFRMMSDKGY 546

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPA-FESVDDNSNI 784
                     K   +      L LK   F  VD    I
Sbjct: 547 TL--------KRDCNGFYYDNLSLKDEDFVKVDSTEGI 576


>gi|160944862|ref|ZP_02092089.1| hypothetical protein FAEPRAM212_02378 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444046|gb|EDP21050.1| hypothetical protein FAEPRAM212_02378 [Faecalibacterium prausnitzii
           M21/2]
          Length = 527

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 153/432 (35%), Gaps = 25/432 (5%)

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
           ++      +FL           +  E  +       +          V+         + 
Sbjct: 114 EEKMLEKTDFLYRKSVLYHYNDQYYEAIDAEGVVALYRQYISPGLDGVKNLRNHLDIYKC 173

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
           ++A         L D    +   ++GIL L   +    + +          + E      
Sbjct: 174 MKANPRLKYEDSLKDKP--YCPLKNGILYLNKMKLKHHSSKRITFTVLDACYDEDAECPV 231

Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           F + +       E++ + F   +G  L+  +  + F  +     SGKS L N I+  +  
Sbjct: 232 FDEFLDTITEGREDLKERFMMALGYLLIEPSSGKYFFVMGYAPNSGKSILGNTIQKLYPE 291

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGD 585
             V N    ++      E+         L+ SRI I  +  +   +    +K+K++TGGD
Sbjct: 292 NSVSNLSLGELGGKFETES---------LLYSRINISLDLPQEVLNASAVSKLKRITGGD 342

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASF 643
            +  +     +  +   +       N  L + + D A+  R I +PF K I    RD   
Sbjct: 343 SIEIQRKNQRS-LKLDHNMKFLFATNFLLRIDSNDPAFLDRIIFLPFMKSIPKDERDPDL 401

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
           A+KL  K         L+  +  + +G     IP+V      + +   D  + ++++ C+
Sbjct: 402 AKKLW-KERDAIVTKALQYARKLMKQGWQFPPIPDVDCMRGIQRKNSMDYLKEFLENHCE 460

Query: 703 IGE-NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
           +G+ N +  +  L ++Y    ++         S       ++Q G  G   R+++     
Sbjct: 461 MGDYNYFTATSDLRRTYEACCDENGTC---PCSATAFNKYMEQAG--GVRDRKRLTASEN 515

Query: 762 SKRIIKGLKLKP 773
                 G++L+P
Sbjct: 516 PVWGFYGIRLRP 527


>gi|9632926|ref|NP_049955.1| putative primase [Streptococcus phage Sfi19]
 gi|5524021|gb|AAD44074.1|AF115102_33 orf508 gp [Streptococcus phage Sfi19]
 gi|4049997|gb|AAC97924.1| putative primase [Streptococcus phage Sfi19]
          Length = 506

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 121/359 (33%), Gaps = 22/359 (6%)

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           + ++  E  +++           RF+  ++GI D    + +    +     +  T  VE 
Sbjct: 124 NMSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDYKFINFSTIETELVEN 183

Query: 464 EPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
            P            +        E+++   + +  +L G +  ++ I + G G  GK T 
Sbjct: 184 APKPTINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTF 243

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-A 576
             LI    G + V   + +   +            L  + G  ++I  +      ++  +
Sbjct: 244 QQLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESS 294

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
               +  G+ ++      N Y       T     N     +N  +  +RR ++IPF K  
Sbjct: 295 NFNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTF 353

Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
              D ++A K +     E  ++ L   KA          P+   +  +E ++  +T   +
Sbjct: 354 GINDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFSEPKATQERMQEFKEENNTVYKF 411

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           +++      +       L   Y  +  +  +   K          L Q   +G IK  +
Sbjct: 412 LNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWIKDRQ 467


>gi|219853114|ref|YP_002467546.1| P4 family phage/plasmid primase [Methanosphaerula palustris E1-9c]
 gi|219547373|gb|ACL17823.1| phage/plasmid primase, P4 family [Methanosphaerula palustris E1-9c]
          Length = 507

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/428 (14%), Positives = 138/428 (32%), Gaps = 24/428 (5%)

Query: 351 ITASIMNFLVSM--KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
           I   ++    ++  K+ ++   ++      +              +    N+K     + 
Sbjct: 87  IMDYVIKHFAAITFKDVIYIYDQKTGTYRPDEGEINGLIMDLLHSEGYTNNNKIAELFRE 146

Query: 409 LEAGSIFS--ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
           ++        IT    +  +  +  ++G+LD  T   V  +     T      ++     
Sbjct: 147 IQTRIKARNIITKYPFNLVANLIPCKNGVLDPLTQTIVPRSPAYGFTYMINAEYLPEVDC 206

Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
                 +      ++  +         L+  ++ + ++     G +GK+TL+NL+    G
Sbjct: 207 IFIKKYLRTLVAPKD-YEMLLNLGASCLIRESQKKMYLIYNRSGNNGKTTLLNLLTDMLG 265

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
            +   +    D  +            +  + G    I  +       + + IKQ+TG D 
Sbjct: 266 KENTSSLSLQDFDKG--------GFRVAEIDGKIANISGDLPTTRISDTSVIKQLTGEDF 317

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
           +     YG  Y E           N+     +  DA++ R ++I F       D  F +K
Sbjct: 318 IMIERKYGQPY-EIQNRAILIFGANEPPVFNDTTDAFYSRMVMIEFPNQF-KVDLDFNKK 375

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           L+    L A    LK    +I   L   I       K +  + +D+   + +D     + 
Sbjct: 376 LKEPENLSAL---LKVFVDHIPTLLKSGITTDTEAMKNQYLRESDSVYRFFEDNLVKDQF 432

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
              +   +   Y +Y          +      ++ + +      +   +     +    +
Sbjct: 433 GEIDLDLVYDVYIDYCTVNKVKKVGKK---AFSVRMSEH---FDVSTRRRGSTGEQIAYL 486

Query: 767 KGLKLKPA 774
           KG+K K A
Sbjct: 487 KGVKFKSA 494


>gi|9634996|ref|NP_056712.1| putative primase [Streptococcus phage Sfi11]
 gi|23455861|ref|NP_695091.1| putative primase [Streptococcus phage O1205]
 gi|7523556|gb|AAF63059.1|AF158600_13 putative primase [Streptococcus phage Sfi11]
 gi|7523586|gb|AAF63088.1|AF158601_16 putative primase [Streptococcus phage SFi18]
 gi|2444093|gb|AAC79529.1| ORF13 [Streptococcus phage O1205]
          Length = 504

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 121/359 (33%), Gaps = 22/359 (6%)

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           + ++  E  +++           RF+  ++GI D    + +    +     +  T  VE 
Sbjct: 122 NMSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDYKFINFSTIETELVEN 181

Query: 464 EPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
            P            +        E+++   + +  +L G +  ++ I + G G  GK T 
Sbjct: 182 APKPTINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTF 241

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-A 576
             LI    G + V   + +   +            L  + G  ++I  +      ++  +
Sbjct: 242 QQLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESS 292

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
               +  G+ ++      N Y       T     N     +N  +  +RR ++IPF K  
Sbjct: 293 NFNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTF 351

Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
              D ++A K +     E  ++ L   KA          P+   +  +E ++  +T   +
Sbjct: 352 GINDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFSEPKATQERMQEFKEENNTVYKF 409

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           +++      +       L   Y  +  +  +   K          L Q   +G IK  +
Sbjct: 410 LNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWIKDRQ 465


>gi|9632974|ref|NP_050002.1| putative primase [Streptococcus phage Sfi21]
 gi|5524055|gb|AAD44107.1|AF115103_37 orf382 gp [Streptococcus phage Sfi21]
 gi|2352442|gb|AAC72440.1| orf382 [Streptococcus phage Sfi21]
          Length = 382

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 120/358 (33%), Gaps = 22/358 (6%)

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
            ++  E  +++           RF+  ++GI D    + +    +     +  T  VE  
Sbjct: 1   MSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDYKFINFSTIETELVENA 60

Query: 465 PSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
           P            +        E+++   + +  +L G +  ++ I + G G  GK T  
Sbjct: 61  PKPTINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQ 120

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AK 577
            LI    G + V   + +   +            L  + G  ++I  +      ++  + 
Sbjct: 121 QLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSN 171

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
              +  G+ ++      N Y       T     N     +N  +  +RR ++IPF K   
Sbjct: 172 FNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFG 230

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
             D ++A K +     E  ++ L   KA          P+   +  +E ++  +T   ++
Sbjct: 231 INDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFSEPKATQERMQEFKEENNTVYKFL 288

Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           ++      +       L   Y  +  +  +   K          L Q   +G IK  +
Sbjct: 289 NEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWIKDRQ 343


>gi|29377412|ref|NP_816566.1| DNA primase domain-containing protein [Enterococcus faecalis V583]
 gi|29344879|gb|AAO82636.1| DNA primase domain protein [Enterococcus faecalis V583]
          Length = 794

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/325 (16%), Positives = 111/325 (34%), Gaps = 22/325 (6%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-----VSGY-FES 479
              +  ++G+ +L+T Q    T     T    T +VE     +F D      ++      
Sbjct: 432 RYLIPVKNGVFNLKTKQLEPFTPNYVFTSKIATAYVENPSLPKFNDWDVESWLNEIACGD 491

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            ++     + +  A+ G    ++ I + G G +GK T   L+    G Q +   + +   
Sbjct: 492 AQITTLLWQVISDAINGNYSRKKSIWLMGDGSNGKGTYQQLLYNLIGPQNIATLKINQFS 551

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYS 598
           +            L  L+    VI  +      I+ + +   +   + +   +     YS
Sbjct: 552 E---------RFKLALLVEKVAVIGDDVGAGIYIDDSSEFNSVVTNETILIEVKNRMPYS 602

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
                 T     N+   +RN  +  +RR +++PF+         +  K E     E  ++
Sbjct: 603 A-RMYVTVIQSTNEMPKIRNKSNGTYRRLLIVPFNASFEGAKDDWRIKEEYINRKEVLEY 661

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
            L   KA         +P+V  K  EE +Q  D    + +             + +   Y
Sbjct: 662 VL--HKAVNMDFERFIVPDVSKKLLEEYKQENDPLVDFRETVFKPLGINKIPFYMVYSQY 719

Query: 719 SEYREQELNYDRKRISTRTVTLNLK 743
            E+ ++    + K +S    +    
Sbjct: 720 KEFCKEN---NFKPLSKIKFSKQFT 741


>gi|172055298|ref|YP_001806625.1| hypothetical protein cce_5213 [Cyanothece sp. ATCC 51142]
 gi|171701579|gb|ACB54559.1| hypothetical protein cce_5213 [Cyanothece sp. ATCC 51142]
          Length = 785

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/393 (18%), Positives = 144/393 (36%), Gaps = 41/393 (10%)

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-E 468
           +      +     + + + L  ++G+LDLET +  +      +T      +     S  +
Sbjct: 158 KKMRRLLVCKHWEEKNEKHLPFENGVLDLETSKFHQHAPGFRLTSKLPRQYNPLATSWSK 217

Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
               ++      E+  +     +   L G    Q F ++ G GG+GKST  NL+    G 
Sbjct: 218 TDQWLTEVVKGDEKAKELLLCYMAAVLRGRYDLQVFCYLIGSGGAGKSTFTNLLTQLVGE 277

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
           Q  +  +  ++              +IRL G R++I+++ +       A  K++TGGD +
Sbjct: 278 QNTVELDFDELDDK---------HEVIRLFGKRLLILADQDRVGR-KIANFKKLTGGDRL 327

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW--RRYIVIPFDKPIANRDASFAQ 645
           + R  + N+ S         +  N    V     A W  RR  ++ F+      +     
Sbjct: 328 SGRYLFKNSMS-FQFKGLACVTSN-PPNVFPASTAKWLLRRMRLVEFNGRF-QPNYHLMD 384

Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
           +LE         + L   + +I   L     +       E +  +D   +WI+D     E
Sbjct: 385 ELE-PELPGLTNYLLNLPEHHIENILKGRA-KELTATTWEHQCRSDGLASWINDWLIQDE 442

Query: 706 NLW----------------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNL---KQKG 746
           N +                  S +L  SY  Y +Q     R   +T+  + +L    ++ 
Sbjct: 443 NAFSIIGSNGKEWNDSEYNAYSSTLYGSYVLYCKQTG---RTPKTTQNFSADLIEVTERI 499

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
               +K+ +     K  R I+G++L+   +   
Sbjct: 500 LGWPVKKRRKRIAGKIVRGIEGIRLRTNDDDEQ 532


>gi|224477014|ref|YP_002634620.1| hypothetical protein Sca_1530 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421621|emb|CAL28435.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 506

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/328 (17%), Positives = 104/328 (31%), Gaps = 22/328 (6%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGY-F 477
           +    +   +G+ + ET +    T +   T    T ++EG          F + +     
Sbjct: 146 NEPHLIPVNNGVFNRETKKLESFTPDYVFTTKITTNYIEGAVQPTISGWSFDNWLDEVAC 205

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              EV     + +  +L G    ++ I + G G +GK T   L+    G   V + + ++
Sbjct: 206 GDREVFTLLWQVINDSLNGNYTRKKAIFLVGDGNNGKGTFQTLLSNLIGFDNVASLKVNE 265

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNT 596
                 P           L G  +VI  +      I +++    +  GD +   +     
Sbjct: 266 FDHEFKPSV---------LEGKTLVIGDDVPVGVNIEDSSNFNSVVTGDSILVNVKKKQP 316

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           Y       T     N     +N      RR +++PF+        +   K +     E  
Sbjct: 317 YRAV-FRCTVIQSTNGMPRFKNKTGGTNRRLLIVPFNADFNGTKENPDIKEKYLNNKEVL 375

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
           ++ L   KA         +P+V     EE +Q  D    +     D  +        +  
Sbjct: 376 EYVL--YKAINLDFGKFIVPKVSADMLEEYKQDNDPVYDFKVTEFDTWKIDKVPKSVVYY 433

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQ 744
            Y  + E   N     +S R       Q
Sbjct: 434 RYKVFCE---NSGYHALSERKFYKTFNQ 458


>gi|66391797|ref|YP_238521.1| primase [Streptococcus phage 2972]
 gi|56718454|gb|AAW27960.1| primase [Streptococcus phage 2972]
          Length = 505

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 122/358 (34%), Gaps = 22/358 (6%)

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           + ++  E  +++           RF+  ++GI D +  + +    +     +  T  VE 
Sbjct: 122 NMSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKKKKKLLSFDYKFINFSTIETELVEN 181

Query: 464 EPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
            P            +        E+++   + +  +L G +  ++ I + G G  GK T 
Sbjct: 182 APKPTINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTF 241

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-A 576
             LI    G + V   + +   +            L  + G  ++I  +      ++  +
Sbjct: 242 QQLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESS 292

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
               +  G+ ++      N Y       T     N     +N  +  +RR ++IPF K  
Sbjct: 293 NFNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTF 351

Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
              D ++A K +     E  ++ L   KA        + P+   +  +E ++  +T   +
Sbjct: 352 GINDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFNEPKATQERMQEFKEENNTVYKF 409

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +++      +       L   Y  +  +  +   K          L Q   +G  K +
Sbjct: 410 LNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWTKEK 464


>gi|253581967|ref|ZP_04859191.1| phage primase [Fusobacterium varium ATCC 27725]
 gi|251836316|gb|EES64853.1| phage primase [Fusobacterium varium ATCC 27725]
          Length = 667

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 88/702 (12%), Positives = 202/702 (28%), Gaps = 114/702 (16%)

Query: 57  VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
             GV    +   D+D +  + A    +  + +     V    K K    FR  K  + K 
Sbjct: 44  FFGVLAPGIAYIDVDIR--EQAEFLYNVIQEIGLKCKVFETIKGK-HFIFRDPKGYLDKT 100

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
            T +       I+   +   A  +     +           ++         +++ L  F
Sbjct: 101 ITKQYLACG--IVADSKSGNANGV-----EYLKKVGELTEREIVYGQEFPVNELDELPTF 153

Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
            +        D+     +                         +   GS ++ +      
Sbjct: 154 LKPFKSLGDFDENINKDTGELEPPT--------------ALFNDLGEGSRNDTLT----- 194

Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296
            H     + G                 +     +++                        
Sbjct: 195 RHILALQNVGFTDRDEI---------RDIIRVINSY------------------------ 221

Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356
                  A    D   K + +I +   F+        Y                 + S  
Sbjct: 222 -----FFADPLED---KELETILRDETFIKGEKENIQYNF--------------FSESGK 259

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN--SKAKSTAQSLEAGSI 414
            +  +  E + +     + + +        +  D   + +  N     K + +      +
Sbjct: 260 FYFNNFAEFLKEQYGIIKIDGELHCYEDGIYVKDRGIEKLMINIIPNLKDSNRKEVLKYL 319

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
             IT +    ++  +  ++GI ++ + + +    +  IT      +     S+     ++
Sbjct: 320 DLITEEKERDNTGLIAFKNGIYNILSDELLPFNPKYIITNKIPWNYNLLAYSELMDTTLN 379

Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
            + + +E +       +G  L   N+  +   I G   +GKST + ++ Y  G       
Sbjct: 380 KFAYGNENIRLLIDEVIGYILFAKNELGKAFIITGDKSNGKSTFLKILMYTVGKDNTSAL 439

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
             +DI+ +R          +  + G  + I  +        A   +++  GD + A    
Sbjct: 440 SLNDIINSRFR--------VYEVAGKLLNIGDDIGSGYIPEAEIFRKLVTGDIIVAEQKG 491

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----DASFAQKLET 649
            N   +           N    +++P  A  RR I+IPF      +    D  F  K++T
Sbjct: 492 KNP-IKFNCYAKFIFSANDIPRIKDPTGATARRIIIIPFKNSFTKKSKDYDPYFLDKIKT 550

Query: 650 KYTLEAKKWFLKGVKAYIS--KGLDVDIPEVCLKAKEEERQGTDTYQAWI---DDCCDIG 704
           +     +   + G+       +       E   +  EE  +  +   + I   +D  + G
Sbjct: 551 QEC--IEYLIVIGIIGLKRIIQNKGFTETEETRQLLEEFNRNNNPVLSIIAQLED--EKG 606

Query: 705 ENLWE--ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
           E  +   + + +   Y    + E     K ++    T  +K+
Sbjct: 607 EEFYIGMDKNLVYNYYYSEAQSEGM---KPVTLTNFTRTMKK 645


>gi|254521909|ref|ZP_05133964.1| primase, putative [Stenotrophomonas sp. SKA14]
 gi|219719500|gb|EED38025.1| primase, putative [Stenotrophomonas sp. SKA14]
          Length = 549

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/457 (16%), Positives = 151/457 (33%), Gaps = 52/457 (11%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
           +I  S+  +  S        + E E +  +        +           +      +  
Sbjct: 77  EIDFSLYQWNESEGIWAPQATREVEAHALDWMRKHAPEDAKQSSATSCVKTAILEMIRLP 136

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETG-------QKVKPTKELYITKSTGT---- 458
                 S            +  + G L++          + +    +  IT         
Sbjct: 137 GMKLPES-------QHRAIVPLKGGYLEILKDANKKAYIEYLPADPKHGITSLVPAKLNL 189

Query: 459 --------PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
                        +P   +   +  +     V       +  +++      +   + G G
Sbjct: 190 DQVRSGRYTPKPLDPKSRWAKYLDRFMPDMAVRGLLQEAMASSVMPMCLE-KAFLLLGSG 248

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
            +GKSTL+++++        +  +  D    +   A  A+ +L     +  V+     + 
Sbjct: 249 SNGKSTLLHVLRAIHPKNTAVRIDKLD---GQFAMAPLASKTLYLATEAPKVLSDPIQQ- 304

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
                  +K +   D M+A     + Y+      T F+  N    V + +  +WR+  +I
Sbjct: 305 ------VLKALISRDPMSAENKGKDAYTTV-PRGTLFLALNAMFSVTSHEHGFWRKICMI 357

Query: 631 PFDKPI----ANRDASFAQKLET--KYTLEAKKWFLKGVKAYISKGLDVDI-PEVCLKAK 683
           PF+  +     +RD  F +KL            W L+G    I +G   +  PE      
Sbjct: 358 PFNVRLAENDKDRDPDFHKKLTEDPAEMAVIIDWLLEGAMRLIERGGLPEEMPEAVKALA 417

Query: 684 EEERQGTDTYQAWIDDCCDIGEN-LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
           E+ RQ TDT  ++  +   I E   W + + +   Y  Y   EL   RK +    +   +
Sbjct: 418 EQTRQETDTTASYFAERMVIEEEGTWTDKNDIYADYRNYVLDEL--GRKPVGAEELWKRV 475

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLK---LKPAFE 776
           +++      K++K  K  K++R    L+   LKP  E
Sbjct: 476 RERMPGLQQKQKKATKGSKAER-WVNLRVGGLKPRLE 511


>gi|294508904|ref|YP_003566115.1| conserved hypothetical protein containing phage/plasmid primase P4,
           C-terminal domain [Salinibacter ruber M8]
 gi|294342041|emb|CBH22707.1| conserved hypothetical protein containing phage/plasmid primase P4,
           C-terminal domain [Salinibacter ruber M8]
          Length = 716

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 109/354 (30%), Gaps = 27/354 (7%)

Query: 428 FLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY 485
           ++   +G L L+           E      +   +  G     F   +     S+E  + 
Sbjct: 375 YIPVANGDLFLDGDSVRLEDADPERAPLTRSDAAWDPGADCPCFERHLKNVMPSKEERET 434

Query: 486 FTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                G  LL       + + + G   SGKST + +++   G+   ++     +     P
Sbjct: 435 LQEYAGYCLLHWDIPLHKALFMVGPTASGKSTTLTVLRKLMGSVSKLS-PQQLVNGRFGP 493

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                      L G+   I S+ +     +    K++  GD +     Y   Y     + 
Sbjct: 494 ---------AELEGAWANIRSDISSAVLQDIGLFKEVVAGDPIFVERKYEQGY-NIRPTA 543

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA----SFAQKLETKYTLEAKKWFL 660
                 N+       DDA++RR +++ F   I   +         +LE        +W +
Sbjct: 544 KHLYSANQLPEASIDDDAFYRRILLVSFPTTIPKDERVNRSELDDRLEL-ELDGVLRWAV 602

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG---ENLWEESHSLAKS 717
           +G+   I++  +        + +      + +   +     D+       +     +  +
Sbjct: 603 EGLMEVINQN-EFTHDLSPEQTRRRWESRSSSIGRFKVTALDVTGDHAEDFIPKEKVFSA 661

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           Y+++               ++T  L Q        +       +  R   G +L
Sbjct: 662 YTQFCNDRGLAKE---DQNSLTRTLTQ-DPKIADAQRTPPGHSRQVRCYTGFRL 711


>gi|320353144|ref|YP_004194483.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM
           2032]
 gi|320121646|gb|ADW17192.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM
           2032]
          Length = 548

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 117/373 (31%), Gaps = 32/373 (8%)

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDL 472
           + +       +    L   +G   L+  Q           +         +  +  F   
Sbjct: 186 MITTDDTFFTNVPVGLACANGFHHLKDHQICVEALTAPHRQRVMVDVTPQQQKTPLFDIF 245

Query: 473 VSGYF-----ESEEV-MDYFTRCVGMALLG-GNKAQRFIHIRGV-GGSGKSTLMNLIKYA 524
           +   F       EE  +       G  +LG   + Q+ I      G +GK T+  +I   
Sbjct: 246 LHDTFKSSEPGDEEQQVTLLQEIFGAIILGLMAQFQKAILFYDPFGRAGKGTMERIITNL 305

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
              ++V                      L  L G R+  + E  ++  I +A+ K +TGG
Sbjct: 306 IPGEFVSAVSPFKWNGE---------YYLASLAGKRLNSVGELPDSKPIPSAEFKTVTGG 356

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD----KPIANRD 640
           D +  R      +           + N  +   +  +A++ R+++I F     +     D
Sbjct: 357 DLVAGRHPGQRPF-TFKNEAAHLFMSNHLITTNDHSEAFFCRWLIIEFPNSRLRTGLPID 415

Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
              A ++  K       W L+G K  +  G      +   +  E+ R   ++   +I + 
Sbjct: 416 PGIADRIIQKELSGIAHWALEGAKRLLENG-KFSNSKAHDRLMEKWRLTANSLLEFIHEE 474

Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
           C  G+           +Y E+ +      R   S   V   L     +G         E 
Sbjct: 475 CIRGDEHKVRRAEFYAAYKEWCKDNG---RHPFSKGRVKELLSHNIGLGVTHTSLDGYE- 530

Query: 761 KSKRIIKGLKLKP 773
               I +G+  KP
Sbjct: 531 ----IFRGVAFKP 539


>gi|310826736|ref|YP_003959093.1| phage/plasmid primase [Eubacterium limosum KIST612]
 gi|308738470|gb|ADO36130.1| phage/plasmid primase [Eubacterium limosum KIST612]
          Length = 431

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/437 (14%), Positives = 135/437 (30%), Gaps = 23/437 (5%)

Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
           N  +W     KI           +  +  +++     +           T Y   +   +
Sbjct: 2   NNPVWIDEKGKIIEPEYCRDFLSRHPMRCINDRFYTVDGPLPDENKLKRTIYEEISPWLH 61

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
            K   T + +      +  +D L      +   +G   L+     +   + Y +      
Sbjct: 62  DKVAQTVEQVIKALKLAAYADPLPLQCDRIHVANGTYFLDGTFTEE---KEYCSNRLSVS 118

Query: 460 FVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
           +    P+ E +L  +S   E  E +      +G  L+   K Q+ + + G GG GKS + 
Sbjct: 119 YRADAPAPEHWLRFISELLE-PEDIPALQEYLGYCLIPSTKGQKMLMLIGKGGEGKSRIG 177

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
            ++   FG          ++      +   +  +   L G  +++  + + N       I
Sbjct: 178 VVMNTIFG---------LNMNTTSIQKVENSRFARADLEGKLLMVDDDLDMNALTKTNYI 228

Query: 579 KQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           K +   +  M        +Y                  + +  D ++RR I++      A
Sbjct: 229 KSIVTAELRMDLERKREQSYQGLLYVRFLCFGNGALTALHDRSDGFFRRQIILTTKDKPA 288

Query: 638 NR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
           +R D  F  +           W L+G++  I+      I +          +  +    +
Sbjct: 289 DRFDDPFLAEKLIAEKEGIFLWMLEGLRRLIANHYHFTISQRAKDNITSAVREANNILDF 348

Query: 697 IDDCCDIG--ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIK 752
           +D    +G   +    + +L  +Y  + E         +S ++    L Q    +     
Sbjct: 349 LDSEGYVGFKADYEASTKNLYAAYKRWCEDN---AENPLSPKSFANQLSQNAERYHLEPV 405

Query: 753 REKIEKEWKSKRIIKGL 769
                   K  R   G+
Sbjct: 406 NNLHIGGGKRCRGYMGI 422


>gi|319648621|ref|ZP_08002834.1| Gp60 protein [Bacillus sp. BT1B_CT2]
 gi|317389313|gb|EFV70127.1| Gp60 protein [Bacillus sp. BT1B_CT2]
          Length = 223

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 51/198 (25%), Positives = 78/198 (39%), Gaps = 16/198 (8%)

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
            +KQ+TGG+ M+AR      Y E    F  F   N    V+  D+  WRR  +IPF   I
Sbjct: 1   MVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLIPFTVTI 59

Query: 637 ANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
                D    QKL         +W ++G   +  +GL    PE   KA E  R+  D   
Sbjct: 60  PKEKVDKKLPQKL-AAEMPGILRWAVEGCLKWQKEGLG--EPEAIKKATEGYREDMDILG 116

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            ++ + C    +   E+  L K Y  +  +    +   +  R     ++ +GF       
Sbjct: 117 PFMQERCVQHPSAKIEAKELYKDYKNWCFENDEIE---LKNRAFYRQIEIRGF------- 166

Query: 755 KIEKEWKSKRIIKGLKLK 772
           K E   K+K    G+ L 
Sbjct: 167 KKENGAKNKVFFYGIGLN 184


>gi|255018276|ref|ZP_05290402.1| phage/plasmid primase, P4 family protein [Listeria monocytogenes
           FSL F2-515]
          Length = 284

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 103/281 (36%), Gaps = 18/281 (6%)

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
           K   A  F D  N   F         Y+   K WY  +       +    K         
Sbjct: 10  KAKKAYSFDDTGNAERFRDEYNNSVRYSYVNKGWYYYNSKIWMFDNTGAIK--------- 60

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
                 + ++ ++       S   + +       +     +         EA  +  +  
Sbjct: 61  TLADRVIQNMKKDFAYMESESDIEKAFVKHLKATRGNRGKTNMLK-----EAEHLMPVLP 115

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE- 478
           +  D +  F   Q+G +DL++G+  +  +    TK +   + +   +  +   +   F+ 
Sbjct: 116 EQFDVNKHFFNTQNGYIDLKSGRLNEHDRSKMFTKISHIEYTDKIDAPLWNSFLLDIFDH 175

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +E++DY  + VG +L G    Q    + G G +GKS  +++I   FG+        + +
Sbjct: 176 DKELIDYVQKAVGYSLTGSTSEQVMFILFGNGRNGKSVFLDIINDVFGSYSTNIQPQTIM 235

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
           ++    ++  AN  + RL  +R V  +E NE   ++   IK
Sbjct: 236 VKQ---QSSGANSDIARLHAARFVTTTEPNEGVRLDEGXIK 273


>gi|295104245|emb|CBL01789.1| phage/plasmid primase, P4 family, C-terminal domain
           [Faecalibacterium prausnitzii SL3/3]
          Length = 568

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 132/410 (32%), Gaps = 26/410 (6%)

Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
              +       +  N DY   N       K     L        +         +   ++
Sbjct: 175 TQLDSKQLIKLYRQNVDYELNNESSLRGYKDLYDCLVTDPQIECSEPE--DEPIYAPLEN 232

Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGM 492
           GILDL   +    + +          +      Q F + +         + +     +G 
Sbjct: 233 GILDLMEWKLYPHSPDQITFTCIKAKYDPQAKCQIFEEYLQRVTGGDSLLSERVWMAIGY 292

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
            L+   + + FI ++G+G SGKS L + I+  +  + + +     +       +      
Sbjct: 293 LLIYPARGKFFIFMKGIGNSGKSVLGSFIRRLYPKESISSIRLKQMKNEFGMSS------ 346

Query: 553 LIRLMGSRIVIISETNENDEINA--AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
              L  + I    +   +       +++KQ+TGGD +     + +               
Sbjct: 347 ---LANAVINFDMDMPSSKIDEEAASRLKQITGGDSINVPRKFRDDALLER-RIKFVFSS 402

Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
           N  + +   DDA  +R I +PF+  I +  +D     K+  K         L+  +  + 
Sbjct: 403 NHPIIIDGEDDALLKRIIYLPFNYAIPDDQQDPDLGDKIW-KERDAIATKALRYARKLVK 461

Query: 669 KGLDVDIPEVCLKAKEEERQG-TDTYQAWIDDCCDIGEN-LWEESHSLAKSYSEYREQEL 726
                        AK   R     T   ++ + CD  E+     +  L  +YS+Y +++ 
Sbjct: 462 LNYIFPEIPQMDNAKCIVRDSIAKTVGKFVQESCDKSESKAVTATEDLYNAYSDYCKEKN 521

Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIE---KEWKSKRIIKGLKLKP 773
            +     S +  T  L Q        R   E            KG+KL+P
Sbjct: 522 MWAC---SQKAFTKELTQMKIEHTRFRCTGEDMIARKNPVSAFKGIKLRP 568


>gi|313896410|ref|ZP_07829961.1| nucleoside triphosphatase, D5 family [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312974834|gb|EFR40298.1| nucleoside triphosphatase, D5 family [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 764

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 108/764 (14%), Positives = 220/764 (28%), Gaps = 87/764 (11%)

Query: 31  QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG 90
                W     +     +    G GF+     +     DID +     +    T      
Sbjct: 39  PHRHSWVTYDEALTASKEKHFDGIGFII---PEGYVFLDIDHR--GLDDPLVQTMLRRFD 93

Query: 91  TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW 150
           T          I    + ++E   K  +    +G   +         Y  HPKTK E   
Sbjct: 94  TYAEHSVSGEGIHFYGKCDRE---KIPSYIDGKGQRKLDKT-----YYTKHPKTKIELYV 145

Query: 151 TTPPHRFKV------EDTPLL--SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202
               +RF V       D PL   +   +  L K  +         K+    +   T +  
Sbjct: 146 GGMTNRFAVFTGNVISDKPLKDCTAAVLTTLDKDMRRSKKQKYSAKRDGDRNIYNTISKL 205

Query: 203 RQYTNREITAFLSCFGE--EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260
           R+  N E  A L   G+   + + S  +     +        +     I R+ +     +
Sbjct: 206 REQKNGEKFAALFDRGDITGYGSPSEADAALCALIAFRTGADAEMIDAIFRQSALYREKW 265

Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
           + E++          E       RS     ++                     +M + Y 
Sbjct: 266 EREDYREATIAVGI-EACQGVFHRSKMEHPYFIRFHEKTGAP-------YVEPSMLAKYV 317

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
           + H  Y     +   K     Y++     +I A           D        +      
Sbjct: 318 REHLDYILVRNS--GKQGMIKYVYERGAYRIYA-----------DDMMKGVIKKFIADYD 364

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
           +                      + A  L A  +  +  + LD+  R +  ++G+L +  
Sbjct: 365 EELVRIK--------------PINEAFQLLATDLDYVPQEKLDADERLINFRNGLLYVSA 410

Query: 441 GQK--VKPTKELYITKSTGTPFV-EGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLG 496
            +      + +   T      +  +  P+  F   +         +       +G  +  
Sbjct: 411 AEAVLHPHSPKAMSTIQIPCNWTGKETPTPVFDRYMHILTGGDAAIRQLLLEFMGACISN 470

Query: 497 GNKAQ--RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
               +  + + + G G +GKS L +L++   G    I  + ++I          A     
Sbjct: 471 VKGWRMKKALFLVGEGDTGKSQLKSLVERLLGTGNYIGIDLAEIE---------ARFGTG 521

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            L G+R+   S+ +          K++TGGD + A       + E       +   N+  
Sbjct: 522 TLYGTRLAGSSDMSFLTVAELKTFKKITGGDSLFAEFKGQQGF-EFTYGGLLWFCMNRLP 580

Query: 615 FVRNPDD-AWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
                D    + R + +    PI    +D    +K+            +  ++  I+ G 
Sbjct: 581 KFGGDDGKWVYNRIMAVNCPNPIPKDAQDKLLLEKMY-AEREGIVYKAVTALQTVIANGY 639

Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW----EESHSLAKSYSEYREQELN 727
               PE     +E  R+  +T   + ++C +  E         +  +   Y  + +   +
Sbjct: 640 RFSEPESIHVIRETYRRENNTVICFFEECMEEREESKYTDGATTGRIYNVYKAWCQDNNH 699

Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
              K  + +     L       G   + I    ++    +   L
Sbjct: 700 GFSK--TAKEFRDELAAH---VGSTFKDISLHTRTGTYYRKFTL 738


>gi|329767786|ref|ZP_08259302.1| hypothetical protein HMPREF0428_00999 [Gemella haemolysans M341]
 gi|328838887|gb|EGF88481.1| hypothetical protein HMPREF0428_00999 [Gemella haemolysans M341]
          Length = 626

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 128/372 (34%), Gaps = 25/372 (6%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
           +      +   A     +  +       ++  ++G+ +++T + +  T ++ IT      
Sbjct: 267 NFTIGQRREALAMLELLVEQEYQLRDYNYIAFKNGLYNIKTDEFISFTPDIIITNKINWN 326

Query: 460 FVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
           +     +    ++++     ++E+       +G      N+ ++   + G   +GKST +
Sbjct: 327 YNPKSYASLTDEILNNLAINNKEIRMLIEEMIGYTFYRRNELRKAFILTGQKQNGKSTFL 386

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
           N++K   G++     +   +             S   ++     I  + +     +  + 
Sbjct: 387 NILKELLGSKNTSVLDIKHL---------NDRFSTAMMVNKLANIGDDISNKKLYDTEQF 437

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD--AWWRRYIVIPFDKPI 636
           K++  G+ +TA     + + E           N    + + DD  A   R +++PF    
Sbjct: 438 KKIVSGEKITAEQKGRDKF-EFTPYCKLIYSANNIPKLGDGDDAPAVLSRLVIVPFKAYF 496

Query: 637 ----ANRDASFAQKLETKYTLEAK-KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
                +        L T+ ++E      L G+K  +         E   +  EE +   D
Sbjct: 497 DSSSPDYKPFIIDDLITEESMEYLINLGLAGLKRVLKNR-KFTESEYTNREFEEYKNEID 555

Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK-----RISTRTVTLNLKQKG 746
               ++ +  +    + E S  +   Y EY  +E   +       R       L  K + 
Sbjct: 556 PVSEYL-ETLNADLIVNEMSGKIYSEYMEYCMREGYENIPINAFTRKVNNFFNLTTKNRR 614

Query: 747 FIGGIKREKIEK 758
             G I +  ++K
Sbjct: 615 VDGMIVKTYVKK 626


>gi|325832761|ref|ZP_08165524.1| nucleoside triphosphatase, D5 family [Eggerthella sp. HGA1]
 gi|325485900|gb|EGC88361.1| nucleoside triphosphatase, D5 family [Eggerthella sp. HGA1]
          Length = 596

 Score =  173 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 122/355 (34%), Gaps = 27/355 (7%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-----------L 472
                +   +G+ D  +   +    E   T+ +   FVEG  +    +            
Sbjct: 196 KDPELVVVNNGVYDYTSKFLMGFDPEFVFTEKSHVDFVEGAKNPVIHNDDDGTDWDVESW 255

Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVI 531
           +  + +   +++   + VG  L       +   +    G +GK TL  L++   G+    
Sbjct: 256 MEEFSDDPAMVNLLWQVVGATLRPNVTWNKTAWLYSDSGNNGKGTLCTLMRNLLGDGAWA 315

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTAR 590
           +                    L  L     +I  E +    ++ A  +K +   D     
Sbjct: 316 SLPLKAFSN---------PFMLEPLSRVSAIITDENDTGTFVDDAAALKSIITHDPFLMD 366

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
             + +  S    +       N+   +R+  ++ +RR +VIPF+K    R+  + +    K
Sbjct: 367 RKFKDPRS-VLFNGFMVQCVNELPKLRDKSESLYRRLLVIPFEKRFEGRERKYIKDDYLK 425

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
                 ++ L  + A  +   ++D+P+ C+   EE +   D  + + ++           
Sbjct: 426 RKD-VLEYVLYKLLA-TTDYYELDVPQTCIDMLEEFKLENDPVRQFAEEVFAEATWDLLP 483

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG-IKREKIEKEWKSKR 764
              +   Y  + ++ +   R  +       +LK      G + ++K+  + +  R
Sbjct: 484 YKFMYDCYRHWFQRNVPSGR-PVGRNAFLKSLKGLAAECGWLVQDKVRSDGRMDR 537


>gi|268610077|ref|ZP_06143804.1| primase, putative [Ruminococcus flavefaciens FD-1]
          Length = 467

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 117/378 (30%), Gaps = 30/378 (7%)

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
             +         S+ +     F+  Q+G LDL  G         + T      +      
Sbjct: 102 LQIMDALRLYTYSEPIPPDMNFIHVQNGKLDLN-GNFYPHR--EFCTNRLNICYDPNIRK 158

Query: 467 -----QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
                ++FL  +     + E +      +G  L+   K Q+ + + G GG GKS +  ++
Sbjct: 159 GAYYPEKFLTFLMELL-TPEDVTTLQEYLGYLLIPSTKGQKMMFLIGQGGEGKSRIGIVL 217

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
           +  F +        + +  N              L    +++  +       +   IK +
Sbjct: 218 REIFMD--------NMLTGNVHR-IENDRFFRYNLKDRLLMVDDDMQMQALSSTGYIKNL 268

Query: 582 TGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR- 639
              +  +        +      +            + +    + RR I++    P   + 
Sbjct: 269 VTAETPIDVEAKGKQSEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TLPPPEKR 327

Query: 640 --DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
             D   A+K       +   W   G+   ++      I +   +   E  Q       ++
Sbjct: 328 IIDPYIAEK-FIAEKEKIFCWMYDGLLRLLANNYRFTISDKARQNVMETMQDNCNITEFL 386

Query: 698 D--DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE- 754
           +  D    GENL   S +L  SY  + E       KR +       L+Q      IK + 
Sbjct: 387 EDTDRVQYGENLRVASSALYDSYYHWCEDNALTALKRET---FVSWLRQNEAAYHIKYDL 443

Query: 755 KIEKEWKSKRIIKGLKLK 772
            I       R  KG+ LK
Sbjct: 444 NIPSGSSHVRGFKGIALK 461


>gi|78212114|ref|YP_380893.1| ATPase-like [Synechococcus sp. CC9605]
 gi|78196573|gb|ABB34338.1| ATPase-like [Synechococcus sp. CC9605]
          Length = 902

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 108/806 (13%), Positives = 224/806 (27%), Gaps = 146/806 (18%)

Query: 55  GFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILI---PFRMNKE 111
           G VC   E       ID +            +    TP + +    K +     FR    
Sbjct: 121 GVVCMSYE-------ID-EGLDLEGQKVAWKKANLPTPTIGVFTGNKSIHWSWVFRTPVS 172

Query: 112 GIKKKKTTESTQGHLDILGCGQYF------------VAYNIHPKTKKEYTWTT-PPHRFK 158
               +   E     ++    G               +A ++HPKT +        PH ++
Sbjct: 173 LTAAEFCRERLSKAIEDANPGVQTDHNLHSAVQVQRLAGSVHPKTGRRAEIIHLSPHTYE 232

Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN-----REITAF 213
           +++      E    L +   ++T      + +  P            T       +  A 
Sbjct: 233 LDEVLSFLPE----LDEPVDDVTDSGGDFRPADGPEPDDHEQFPDFSTLPPGHLIQALAP 288

Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE---------IARRWSKQG------- 257
            +    +  +   D+       +    R      E          +   +          
Sbjct: 289 KTLGLLKGLDPDSDDRWRKCWQLSKHLRAGRLHLESLGCTVVDADSIEMTLMSDFIRASG 348

Query: 258 ---------------------STYDEENFNYKWDT-FDFEEIGDTAKKRSTFTSLFYHHG 295
                                S Y +     K    F+ E +   +        L     
Sbjct: 349 MKGGDVEAALEEHYRPEPCGTSDYCDTYLKRKLRAHFEHEGLWRHS--YGWHKRLVPASN 406

Query: 296 KLIPKGLLASRF-------------------SDAYNKAMFSIYKKGHFLYTADTKAWYKK 336
                  +   F                            +  +     Y  D   W   
Sbjct: 407 PADWTANIDDSFWTVCRIKTCEVVIENAIGLKGDLTNQPLAHSRGRFVRYNPDQGCWLHV 466

Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396
                                   +MK +V DL  +    NK+ +    +      + ++
Sbjct: 467 S---------------------RDAMKREVADLLLKCFSYNKDEEKVFRFSTASRVKSSI 505

Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
           E      +                 +D +   +   +G   ++ G+ V    E  +T S 
Sbjct: 506 EWLETMTA--------------DAEMDQTP-AIAFANGTYLIDKGELVPHKPEYRLTYSI 550

Query: 457 GTPFVEGE--PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
              F+           D +   F     ++   + +   +      ++ + + G  GSGK
Sbjct: 551 QGDFIPDCVECPPHLHDFIVSSFGD-HYVEPVQQLLRYMVDPTLPNRKIVMVIGPSGSGK 609

Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
             L  LI+  F    V +  +S        E          + G ++V   +  +  +  
Sbjct: 610 GVLERLIEKLFPPSCVSSITSSI------KEINSPEKIRQYVSGKQLVAFPDV-QGLQTG 662

Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
              I  M  G  M  R  + +       +    I  ++     N      RR +++   +
Sbjct: 663 VTTIYSMVDGGLMAQRNLFTDDTEGVVFTGRVVICSSQAPQFENAGSGMARRALILETQR 722

Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
           P    DA   QKL          W L+   A + + L V   +  + A+       D  +
Sbjct: 723 PAEKPDADLDQKL-AGELGSIVSWALQAKHADVKRVL-VSGNQTFIDAQHNVEADMDVVR 780

Query: 695 AWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
            ++D+CC+  G +   +   L +++ ++ E       K ++ RT+   +KQ       +R
Sbjct: 781 QFLDNCCEPCGGDYMPKLGVLYETFKQFCEDFGYT--KVLNRRTLLTRIKQALPNLHTQR 838

Query: 754 EKIEKEWKSKRI---IKGLKLKPAFE 776
             +     +K++   + G +++P  +
Sbjct: 839 RSVPGTNSTKKVNPQLFGFRIRPEVD 864


>gi|218290889|ref|ZP_03494953.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
            LAA1]
 gi|218239156|gb|EED06358.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
            LAA1]
          Length = 1061

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/549 (16%), Positives = 181/549 (32%), Gaps = 59/549 (10%)

Query: 252  RWSKQGSTYDEENFNYKWDTFDFEEI--GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
              +   STY E          D   +  G  +        + +       +   A     
Sbjct: 485  EMAGATSTYIEGELEEVLRERDERVLATGGVSSDYWRQQGMRFEIAADWMRNSGARAVEY 544

Query: 310  AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
               K  + +          +    Y         ++        S   F+         L
Sbjct: 545  DEEKEKYKLVHIDFVRALYEDFPSYYFYSGINL-YNGKYYDFKKSDAAFIKRFM--AHAL 601

Query: 370  SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
              E +     +     +       +  E  +   +   S+             D+     
Sbjct: 602  MTEHKHWVTPTMLNNLFTLYKTWLEADEVRNVEDAKVSSV------------FDTDP-LF 648

Query: 430  GEQDGILD---LETGQKVKPTKELYITKSTGTPFVEGEPS----------QEFLDLVSGY 476
              Q+GILD   L+     + +    +T      ++               ++    +S  
Sbjct: 649  PVQNGILDVSSLKHPVMREFSPNYLVTWQIDAAWLREWEMSRRGHWTLAMEQAEKDMSDL 708

Query: 477  FES----EEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
            F      EE        +G +L       QR+  + G G +GK TL+ L++  FG  +V 
Sbjct: 709  FREFDLSEETTTALFEAIGYSLAKFDVDEQRYFVLLGPGYNGKGTLLRLLESIFGK-FVE 767

Query: 532  NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
                 ++++NR   +        RL  + I I+++ +     +   IK++TG D +TA +
Sbjct: 768  TVTLQELVENRFAAS--------RLARASINIVADASNQTLKDTETIKKLTGNDLLTAEM 819

Query: 592  NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651
             Y + +         ++  N      +    ++RR ++ PF + +  + A + ++L T  
Sbjct: 820  KYRDAF-PFRPRIKLWMASNHLPPTPDGSFGFFRRPLIFPFHRQLPMKPADWEKRLRTPE 878

Query: 652  -TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-------DCCDI 703
                     +K      ++G  +   +  L+A+ +     D  QA I        D  + 
Sbjct: 879  AKSYLLYLAVKHYLNMRAEGRKLTESKEMLRARMDYWAANDIVQAAIQYGIFEFPDSQNK 938

Query: 704  GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE-KEWKS 762
                +    +LA    E   +EL   RK++ST T+   L  +G    IK      ++ K 
Sbjct: 939  DRKDYVVPRALATKAIELFAEEL--GRKKVSTNTLLERL--RGNYADIKEVFATCEDGKR 994

Query: 763  KRIIKGLKL 771
            + + +G++L
Sbjct: 995  RHVWEGVRL 1003


>gi|329768217|ref|ZP_08259718.1| hypothetical protein HMPREF0428_01415 [Gemella haemolysans M341]
 gi|328837416|gb|EGF87045.1| hypothetical protein HMPREF0428_01415 [Gemella haemolysans M341]
          Length = 814

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/758 (11%), Positives = 210/758 (27%), Gaps = 79/758 (10%)

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
            + L   DI+     +        E L               + +          +    
Sbjct: 73  TRNLIVIDIEDTGLSSQEVQTIIQEKLASY----------KYLLYSTISHKPNNPRLRLV 122

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
            +   DI+         N+      +Y   +     +++  P+   ++     K    + 
Sbjct: 123 LEPSRDIVKDEYKPTIQNVIQLLNIKYD-KSSCTWSQLQGLPIAVRDNEFIFIKHLDGLP 181

Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
            P+ +  K      T    ++      +     +   + +    ++  I      +++  
Sbjct: 182 YPVQEAVKEEKKVITNYTASDTNTLLTD--EEYTEMFKRYLELDYEN-INSDENNYNKAL 238

Query: 242 GSSKGKEIARRWSKQGSTYD-EENFNYKWDTFDFEEIGDTAKKRSTFTSLF--YHHGKLI 298
           G      I   +     +YD     +               + +         + +    
Sbjct: 239 GI--LLSITYDFCYNIISYDVACECSDLLANIGKNPEKYRQENQDKINHAIKSWENNPNY 296

Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA---------WYKKD-KNNVYIWSLTL 348
                +      +        K   +L                W          I + T+
Sbjct: 297 FDNEKSYSMLQRFEIVGNKKDKNFSYLVRYKLNKPILNTGELHWRLYTAGEQWRIENTTV 356

Query: 349 DKITASI----MNFLVSMKEDVFDLSEEPEDNNKNSKS--------------PRFWFNTD 390
           ++ T  +    + F V  K  +  +       N+++                  +     
Sbjct: 357 NEKTGKVTVPQVPFYVIAKFLLTHIPIIKSGANEDTALLFFYDFSKGIYTSNDDYIKTCI 416

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
            + +   + +K K   + L A + F      LD     +   +G+ + +T        + 
Sbjct: 417 KKIEIRYKLTKLKDVTEDLRANTRFR-KPQRLD---YLIAVGNGLFNTKTKTLEPFDPKH 472

Query: 451 YITKSTGTPFVEGE---------PSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKA 500
           +IT    T +                 F + +       +E++    + +  A+      
Sbjct: 473 FITAKVDTNYNTKALTNYELIKNTYFNFDEWLKSIACNDDEIVTLLWQLINEAINPNKTR 532

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
           ++   + G G +GKST   ++    G+  +  +   ++         ++   L  L G  
Sbjct: 533 RKIAIMLGNGTNGKSTFRQMMINLIGDINISVSTPHEL---------QSRFGLTSLEGKI 583

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
                E          K+K ++ G+ +       +               N+   +++  
Sbjct: 584 CNYGDEVGTKPLDEMDKLKSISSGESVNYERKNKD-VRNYDFKTLLMFNSNEIPPIKDKS 642

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
           DA   R ++IPF            +  +    +   ++ L    A         IPE   
Sbjct: 643 DAVLNRLLIIPFKANFEGVKDESIKDEKLNNKI-ILEYIL--YTALHLDFDKFIIPEAVK 699

Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWE--ESHSLAKSYSEYREQELNYDRKRIST--- 735
           K     +Q  D+  +++    D G +         L   Y  +  +     RKRI     
Sbjct: 700 KQLLNYKQENDSVFSFMLYYKDKGYHHVSCFPVRYLTDDYENFCYENGYNTRKRIGNAFT 759

Query: 736 RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
           + +  NL    +   +K  +  KE   +  I G  ++P
Sbjct: 760 KHLNDNLTTSNYSYELKNHRFTKENTDELNIYGRNIQP 797


>gi|225377669|ref|ZP_03754890.1| hypothetical protein ROSEINA2194_03320 [Roseburia inulinivorans DSM
           16841]
 gi|225210533|gb|EEG92887.1| hypothetical protein ROSEINA2194_03320 [Roseburia inulinivorans DSM
           16841]
          Length = 459

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 116/360 (32%), Gaps = 24/360 (6%)

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478
           +        +   +G L L+ G   +   E  +       +    P    +L  + G   
Sbjct: 88  EDFPPEPDRIHLSNGTLFLD-GTFAEGKPE-NVRNRFPVAYNPNAPKPVLWLQFLDGLL- 144

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             E +      +G  L+  NK QR + I+G GG GKS +  ++   FG         S++
Sbjct: 145 YPEDIPTLQEYIGYCLIPSNKGQRMMVIKGSGGEGKSQIGAVLGTLFG---------SNM 195

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597
                 +  +   +   L    + +  +           +K + T    M        +Y
Sbjct: 196 KDGSIGKISENRFARADLEHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSY 255

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEA 655
                +            + +  D ++RR +V+   +  A R  D   A+K+        
Sbjct: 256 QGWMCARLLAFSNGDLQALFDRSDGFYRRQLVLTTKEKPAGRVDDPDLAEKM-KAEVEGI 314

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHS 713
             W  +G++   +        +   + +E  ++  +    ++D      +  +L   S  
Sbjct: 315 LLWAFEGLQRLAANNFKFTESDRTRENREAVKRDNNNVYDFLDSDGYVRLKADLSASSKE 374

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           L ++Y  Y  +      K    R+ +  L   Q  +             +  R   G+++
Sbjct: 375 LYEAYQIYCTENNLPALKP---RSFSEALIACQSRYNLEYCNNVTNAAGRRVRGFLGVEV 431


>gi|257793137|ref|YP_003186534.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
 gi|257479829|gb|ACV60145.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
            subsp. acidocaldarius DSM 446]
          Length = 1061

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 93/601 (15%), Positives = 190/601 (31%), Gaps = 65/601 (10%)

Query: 200  NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259
               + +T  ++         +    + + W      +  E    ++  E A   S    T
Sbjct: 439  RPGQDFTEADLPKMDGLPALDNEEEAEEAWKD--GLLSDEQVDPNEAFETADATS----T 492

Query: 260  YDEENFNYKWDTFDFEEI--GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317
            Y E          D   +  G           + +       +            K  + 
Sbjct: 493  YIEGELEEVLRERDERVLATGAVPSDYWRQQGMRFDIAADWMRNSGFRAVEYDEEKEKYK 552

Query: 318  IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377
            +          +    Y         ++        S   F+         L  E +   
Sbjct: 553  LVHIDFVRALYEDFPSYYFYSGINL-YNGKYYDFKKSDAAFIKRFM--AHALMTEHKHWV 609

Query: 378  KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
              +     +       +  E  +   +   S              D+       Q+GILD
Sbjct: 610  TPTMLNNLFTLYKTWLEADEVRNVEDAKVSSF------------FDTDP-LFPVQNGILD 656

Query: 438  ---LETGQKVKPTKELYITKSTGTPFVEGEPSQE---F-------LDLVSGYFES----E 480
               L+       + +  +T      ++          +          VS  F      E
Sbjct: 657  VSSLKRPVMRDFSPDYLVTWQIDAAWLREWEMPRRGHWTLAMEQAEKDVSDLFREFDLSE 716

Query: 481  EVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E        +G +L       QR+  + G G +GK TL+ L++  FG  +V      +++
Sbjct: 717  ETTTALFEAIGYSLAKFDVDEQRYFVLLGPGYNGKGTLLRLLESLFGK-FVETVTLQELV 775

Query: 540  QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
            +NR   +        RL  + I I+++ +     +   IK++TG D +TA + Y + +  
Sbjct: 776  ENRFAAS--------RLARASINIVADASNQTLKDTETIKKLTGNDLLTAEMKYRDAF-P 826

Query: 600  SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY-TLEAKKW 658
                   ++  N      +    ++RR ++ PF + +  + A + ++L T          
Sbjct: 827  FRPRIKLWMASNHLPPTPDGSFGFFRRPLIFPFHRQLPMKPADWERRLRTPEAKSYLLYL 886

Query: 659  FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-------DCCDIGENLWEES 711
             +K      ++G  +   +  L+ + +     D  QA I        D  +     +   
Sbjct: 887  AIKHYLNMRAEGRKLTESKEMLRTRMDYWAANDIVQAAIQYGIFEFPDSQNKDRKDYVVP 946

Query: 712  HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE-KEWKSKRIIKGLK 770
             +LA    E   +EL   RK++ST T+   L  +G    IK      ++ K + + +G++
Sbjct: 947  RALATKAIELFAEEL--GRKKVSTNTLLERL--RGNYADIKEVFATCEDGKRRHVWEGVR 1002

Query: 771  L 771
            L
Sbjct: 1003 L 1003


>gi|325680110|ref|ZP_08159676.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Ruminococcus albus 8]
 gi|324108185|gb|EGC02435.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Ruminococcus albus 8]
          Length = 460

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 115/363 (31%), Gaps = 30/363 (8%)

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-----QEFLDLVSGY 476
           L+    F+  Q+G LDL  G      ++ +        +     +     + FL  +   
Sbjct: 110 LNPDLNFIHVQNGKLDLN-GNFYP--RKEFCQNRLNICYDPNIRNGAYYPERFLTFLMEL 166

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
             + E +      +G  L+   K Q+ + + G GG GKS +  +++  F +        +
Sbjct: 167 L-TPEDVTTLQEYLGYLLIPSTKGQKMMFLIGQGGEGKSRIGIVLREIFMD--------N 217

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLNYGN 595
            +  N              L    +++  +       +   IK +   +  +        
Sbjct: 218 MLTGNVHR-IENDRFFRYNLKDRLLMVDDDMQMQALSSTGYIKNLVTAETPIDVEAKGKQ 276

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQKLETKYT 652
           +      +            + +    + RR I++    P   R   D   A+K      
Sbjct: 277 SEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TLPPPERRIIDPYIAEK-FIAEK 334

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEE 710
            +   W   G+   ++      I +   +   E  Q       +++  D    G NL   
Sbjct: 335 EKIFCWMYDGLLRLLANNYRFTISDRARQNVMETMQDNCNITEFLEDTDRVQYGGNLRVA 394

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-KIEKEWKSKRIIKGL 769
           S +L  SY  + E       KR +       L+Q      IK +  I       R  KG+
Sbjct: 395 SSALYDSYYHWCEDNALTALKRET---FVSWLRQNEATYHIKYDLNIPSGSSHVRGFKGI 451

Query: 770 KLK 772
            LK
Sbjct: 452 ALK 454


>gi|317057146|ref|YP_004105613.1| phage/plasmid primase, P4 family [Ruminococcus albus 7]
 gi|315449415|gb|ADU22979.1| phage/plasmid primase, P4 family [Ruminococcus albus 7]
          Length = 558

 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/467 (14%), Positives = 163/467 (34%), Gaps = 23/467 (4%)

Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYI--WSLTLDKITASIMNFLVSMKEDVFDLSE 371
           ++ + YK        + +   KK+  + Y   W  T  ++   +    +  +  ++ ++ 
Sbjct: 95  SLVAPYKDKALRQLKEAEHQEKKEDKSKYPKWWDGT--QVNEDVFCTELLTQHTLYCING 152

Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
              D +              R +     + A  T + +EA  I        + +   +  
Sbjct: 153 LFYDIDGEFLISELSKVIYERIKPYVVKNVADRTKRLVEAMKIKCYRPAP-EPNEHTIHL 211

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFESEEVMDYFTRCV 490
           ++G L L  G  V    + +     G  +    P  E +L  V      ++VM      +
Sbjct: 212 KNGTLHLAQGHFVFSQGKQFTMNRLGIEYRSDAPKPERWLKFVQELLNEQDVMT-LQEYM 270

Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
           G  L+   +AQ+ + I G GG GKS +  ++    G +  ++   S +          A 
Sbjct: 271 GYLLIPSTRAQKMLMISGNGGEGKSRVGKVLFEIMGYKNSVSGSVSGLD-----NGAAAR 325

Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLNYGNTYSESPASFTPFIV 609
            + ++L+G   +I  + + +       +KQ+   +  M        ++     +      
Sbjct: 326 FNKVKLLGKLCMIDDDMDMSALEKTEFLKQLITAEIPMEIEPKGSPSFQALLYTRVIAFG 385

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYI 667
            N    + +  + ++RR +++       +R  D    +KL         +W L+G++  I
Sbjct: 386 NNPISALYDRSEGFFRRQMILVAKPVPKDRTADKHLTEKL-LAEKEGIFRWCLEGLERLI 444

Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC--CDIGENLWEESHSLAKSYSEYREQE 725
           +   +  I +   +  +   +  +    +++         +    S  L  +Y  +    
Sbjct: 445 ANDFEFTISDQAKENLKRSERECNNIIPFMESEHDFKFDASGQIHSQELYWAYQSWCRLN 504

Query: 726 LNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKEWKSKRIIKGLK 770
              +   +S RT +  LK     +        + ++ +  R   G++
Sbjct: 505 SLDE---LSRRTFSGYLKSHADDYGITYSENAVNEQGRRARGFLGMR 548


>gi|262113722|emb|CAR95389.1| hypothetical protein [Streptococcus phage phi-m46.1]
          Length = 610

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/518 (16%), Positives = 164/518 (31%), Gaps = 67/518 (12%)

Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
           +           +D  +  +E++   +KFF +      +       ++   +++      
Sbjct: 111 FHIYFQIEEVADKDIYVAMKEELCNQYKFFDDNAKDAARFFFGNPNAQVIWHDSWLTIDE 170

Query: 208 REITAFLSCFGEEFYN------------GSHDEWIPVVMA-VHHETRGSSKGKEIARRWS 254
               A     GE+F              GS +  + V  A +      + + ++     +
Sbjct: 171 DLFQAVSIDDGEDFDADFYTPPNGPIQQGSRNSTMSVFAAKILKRLGVTQESRDGFDEQA 230

Query: 255 KQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNK 313
           ++     D+   +  W +       +   K S     +        + L    +SD    
Sbjct: 231 QKCVPPLDKAELDTIWGS--AVRFYNRTIKTS---KGYVAPDAFNRETLKPDDYSDVGEA 285

Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM---------NFLVSMKE 364
            + +        YT  T   Y         +  T  +    +            L     
Sbjct: 286 GVLAREYANRLAYTNATDYLY---------YDGTHWRENKQLALGAVVHFTDEQLAEANA 336

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYR---------------------RQNVEENSKAK 403
            +    ++ + +  +  + +       +                     +  ++      
Sbjct: 337 FLETAEKQLQSSGIDELTIKAGGKHLEKAVETPLQLKYLKAYLAAKEFHKFVMKHRDYKN 396

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFV 461
             A    A  + S+    LDS    L   +   DL  G   + +   E YITK T     
Sbjct: 397 LMAVYNTAKPMLSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNPEDYITKITAVSPS 456

Query: 462 EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
           +      + + ++ +F   +E++DY    +GMA +G    +  I   G G +GKST  N 
Sbjct: 457 DQG-MGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNT 515

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           I    G+     +  +  M N+       +P L  L G R+VI SE  E   +N A +KQ
Sbjct: 516 IARVLGSYSGKLSADALTMSNKR----NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQ 571

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
           +T  D + A   Y + +     S T  +  N    V  
Sbjct: 572 ITSTDEIQAEKKYKDPFH-FVPSHTLVLNTNHLPKVGG 608


>gi|119487229|ref|ZP_01620980.1| hypothetical protein L8106_20932 [Lyngbya sp. PCC 8106]
 gi|119455784|gb|EAW36919.1| hypothetical protein L8106_20932 [Lyngbya sp. PCC 8106]
          Length = 842

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 88/527 (16%), Positives = 174/527 (33%), Gaps = 49/527 (9%)

Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK--------- 336
           T   +  +    +          D      F  ++          + W +K         
Sbjct: 212 TLFGVPVYSITGLWNEAEGKGIDDYIQMNGFDKFRDEVLSKAETIEQWKEKHLTSLERQL 271

Query: 337 -DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD----- 390
              +         ++I     N L    E    +  E ED    S     +  +      
Sbjct: 272 SKDSKTPTQKNIANEIAEEYENKLAFNDETNTWMRYEAEDKGVWSPESDRFIRSIISQVV 331

Query: 391 -YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR-FLGEQDGILDLETGQKVKPTK 448
             +    +  +  K   + LE      +    L+ S    L   +G+L++ + + V+ + 
Sbjct: 332 EGKGIKFKTQTYVKQVIECLEVDPRI-LKRKWLERSPNEVLPHHNGVLEIASSKFVEHSP 390

Query: 449 ELYITKSTGTPFVEGE-PSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
             Y+T +    +        +  D +      +  + +         L G +  Q+ +H+
Sbjct: 391 LNYLTWTLPREYDPEAKDWSKINDWLDEVSQGNPMIRNLLICFANAVLTGKSGIQKMMHL 450

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G+GGSGK+T  NLI    G   V++        NR           IR    R V+ S+
Sbjct: 451 MGLGGSGKTTYSNLITDLIGENNVLDEGVEQFCTNRFTP--------IRAYQKRFVLFSD 502

Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
             E    N + I ++ GG+ +T     G    +   +    +V    +      + W RR
Sbjct: 503 EQE-LPKNISNIMKLVGGNNLTGEQK-GKPAFQFRFTGIAMLVSEHPIAQGIRGNGWKRR 560

Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD--VDIPEVCLKAKE 684
            I +P +  +A++D    +            + L     ++++ L    DIPE  L+  +
Sbjct: 561 VIPLPMNLKVADKDRRDLRAEFQSELPAFTNYLLSLSDEFVTQTLRGVSDIPECKLQFWQ 620

Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESH------------SLAKSYSEYREQELNYDRKR 732
             R   D+  AW++DC         +              +L  SY+++ ++        
Sbjct: 621 S-RLREDSIAAWLNDCIICDPEAQTQMGGNKNEADNGTPQTLFGSYADFCKRSGM---NP 676

Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
            S    +  L +     G+  E      +S   I G++L+   +  D
Sbjct: 677 KSVTRFSPELIELC-QSGLSWEVQRFRTRSATQISGIRLRAEGQDDD 722


>gi|254303768|ref|ZP_04971126.1| possible replication protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323960|gb|EDK89210.1| possible replication protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 681

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 101/795 (12%), Positives = 231/795 (29%), Gaps = 158/795 (19%)

Query: 12  QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGF---------VCGVGE 62
           + +  GF       GDK    + K++    + E++        G+           G  +
Sbjct: 4   EKVFRGFYK---SKGDKGKVPILKYK----TDEQLKDFNKKIVGYDRANKEFDSFVGYLD 56

Query: 63  QPLYAFDIDSKDEKT--------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114
                 D+D+KD+K         +    +  E L     + I         F+ + + + 
Sbjct: 57  DGYILIDLDNKDDKGEYDSNKSESKKLIEILEHLGVKTPI-IETPHGHHFYFKCSNKNLT 115

Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
                 S  G       G              +Y         +V      + E  E   
Sbjct: 116 SVSGVYSLIGLKVDYKLGS-------------KYGCACMKALGEVRPVINDTGEVAELPT 162

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--V 232
                            + + T     + + +     +F+S +  +     +DE I   V
Sbjct: 163 FLLNNK-----------VLNNTLKELEDIKASTGGRNSFISKYKYQLLKNGYDELITYQV 211

Query: 233 VMAVHH-ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF 291
           +  +++         KE+     ++     ++    K D+F +       K         
Sbjct: 212 LEIINNYIFDEPLPMKELTTLMRQEHIEASQDTTGIKEDSFLYFTDSGKLKVH------- 264

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
                           +    + M + Y                K  N ++ ++ T  K 
Sbjct: 265 ----------------TRKMAEKMINDYS-------------IIKIDNYLFSYTGTYYKR 295

Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
                  +  ++  +F L ++   N       +    T+ +++N+               
Sbjct: 296 CM-----IEDIERAIFRLHKDITSNELKEVLKKIQLGTEIKKENLS-------------- 336

Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------- 463
                           ++   +GI +L++ +    +K+   T      + E         
Sbjct: 337 ----------------YIALNNGIFNLDSLELEPHSKDKITTVYMDIDYKEDIDYITGYP 380

Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIK 522
             S     ++       E+       +G AL   N   Q+ + I+G   +GKS  + ++ 
Sbjct: 381 ADSPIKSYILDLVQNDFELFTVICEFLGQALYRKNNIIQKCLIIKGDKSNGKSKFLQILT 440

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
             F  + V   +                  L  ++G  + I  + +       + IK++ 
Sbjct: 441 RFFSAENVSTLDLKRFEN---------RFDLFGIVGKMVNIGDDISGQYIGENSNIKKVI 491

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--- 639
             + +       + +       T     N      +   A  RR  ++PF+   +     
Sbjct: 492 TSEMLPIEQKGKDLF-NYKPYVTCIFSCNNMPRFDDSTKAIKRRLCILPFENTYSEENGN 550

Query: 640 -DASFAQKLETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
            +    +++ TK  +     W + G++  +     +   E   +A EE  +  D  + +I
Sbjct: 551 INPHIVEQMTTKENMSNLFNWSIWGLRRVLKN-YVITKSEKITEAVEEFDRENDPIKTFI 609

Query: 698 DD---CCDIGENLW---EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
           D+     ++    +   +++ ++   Y  +         K ++       LKQ      I
Sbjct: 610 DETAGDTELDLKGYFNMKDTKAVYTDYQIWCNNNG---YKELNNINFGKQLKQH-IPNLI 665

Query: 752 KREKIEKEWKSKRII 766
           K        +  R I
Sbjct: 666 KERYRNNFKRPYRYI 680


>gi|310828490|ref|YP_003960847.1| prophage DNA primase [Eubacterium limosum KIST612]
 gi|308740224|gb|ADO37884.1| prophage DNA primase [Eubacterium limosum KIST612]
          Length = 602

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 115/384 (29%), Gaps = 28/384 (7%)

Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
           + + +          T  R         +    ++ E      +           +   +
Sbjct: 147 QSHGERRGLYDTRTETVRRLITALHPGISDVDMRNTENKLRVLVPKVEPCKDKALVPVNN 206

Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-----------LVSGYFESEEV 482
           GI D E    +    +   T  +   FV    +    +            +    +  EV
Sbjct: 207 GIFDYENKILLDFDPKYVFTSKSNVDFVPNARNPVIHNDQDGTDWDVVSWMEELSDDPEV 266

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           +      +G +L       + + +    G +GK T   L++   G     +    D  Q+
Sbjct: 267 VKVLWEVLGASLRPNMPWNKSVWLYSTQGNNGKGTFCALVRNLLGKGSWASIPLKDFGQD 326

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSES 600
                      L  L   + +I  E +    I+ AA +K +  GD       Y       
Sbjct: 327 ---------FMLEELTRVQAIITDENDVGTYIDKAATLKSVITGDPFLLNRKYKAPM-PC 376

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
                     N+   +++  ++ +RR +VIPF+K     +  + +           ++ L
Sbjct: 377 LFRGLMIQCVNEIPKLKDKSESMYRRLLVIPFEKRFEGCERKYIKDDYLGRKD-VLEYVL 435

Query: 661 KGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
                      D   +PE   K+ +  R   D  + + D+  D           L   Y 
Sbjct: 436 --FHTLYEMDFDEFSVPEASEKSLDVFRVDNDPLRQFADEVFDKAAWDLLPCKFLYDLYR 493

Query: 720 EYREQELNYDRKRISTRTVTLNLK 743
            + +  +    K +S  +   +L+
Sbjct: 494 YWFQTNVPQG-KMLSRNSFYSSLE 516


>gi|295103749|emb|CBL01293.1| phage/plasmid primase, P4 family, C-terminal domain
           [Faecalibacterium prausnitzii SL3/3]
          Length = 438

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 123/439 (28%), Gaps = 29/439 (6%)

Query: 341 VYIW-SLTLDKITASIMNFLVS--MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
              W +            FL    +K     L          S+  +             
Sbjct: 11  WPDWYNGKKIDEVQFGRAFLEQWPLKCVNGTLYTLDGPVEDESEIKQRILENIEEYVISG 70

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
            + K  +  ++++        SD        +  Q+G+  L  G   +    L+      
Sbjct: 71  LSKKITNILETIK----LLAFSDPFPIEQDCIHLQNGVYHLPDGSFQESR--LFCQNRLP 124

Query: 458 TPFVEGE-PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
             +         +L  +    +  + +      +G  L+   K Q+ + I G GG GKS 
Sbjct: 125 VKYDPKAATPDRWLTFLHELLDDAD-IPTLQEYLGYCLIPSTKGQKMMLIVGKGGEGKSR 183

Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
           +  ++K   G+                 +      +   L    ++I  + + N      
Sbjct: 184 IGLVLKRLMGDAA---------SNGSVQKVENNRFARADLERRLLMIDDDMDMNALPKTN 234

Query: 577 KIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
            IK +   +  +        +Y     +            + +  D ++RR +++     
Sbjct: 235 YIKTIVTAEAKLDLERKGVQSYQRDIYARLLCFGNGALTSLYDHSDGFFRRQLILTTKDK 294

Query: 636 IANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
             +R D  F  +           W L+G+   +       + E      +  ++ ++   
Sbjct: 295 PTDRMDDPFLVEKMCAELEGILLWCLEGLHRLVQNNFRFTVSERAAANVDTIKRSSNNVI 354

Query: 695 AWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGG 750
            +++         +    S      Y ++ E         +S    +  L+Q  + +   
Sbjct: 355 DFMESEGYFRFKADYSISSKEFYDIYKQWCEDNAC---HSVSAIRFSAELRQNDRRYNLE 411

Query: 751 IKREKIEKEWKSKRIIKGL 769
                     +  R   G+
Sbjct: 412 ATNNIYLPGGRRVRGFVGI 430


>gi|71900788|ref|ZP_00682908.1| Poxvirus D5 protein [Xylella fastidiosa Ann-1]
 gi|71729465|gb|EAO31576.1| Poxvirus D5 protein [Xylella fastidiosa Ann-1]
          Length = 258

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 27/248 (10%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
            +    +  L G R++ ++ET+E   +    +KQ TGGD + AR    + + E   +   
Sbjct: 16  DRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSD-FFEFRPTHKL 74

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQKLETKYTLE 654
            ++ N    ++  D   W R ++IPF                   D    +KL       
Sbjct: 75  QLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEAGIAQYPIDHKITEKL-AAEREG 133

Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS- 713
              W + G   +   GL+   PE+   A ++ +   D    +I++ C +G    E+  + 
Sbjct: 134 VLAWVVAGAVEWCKNGLNP--PEIVRNASKDYQTEQDRIAQFIEEECVLGMEHEEKLTAP 191

Query: 714 ----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR---II 766
               L  +Y+++ +    Y    +S       L++       K  K       +R   +I
Sbjct: 192 MGGGLYPAYTQWCKDSGVY---PLSKVRFLGELERCVPDFRKKVTKETVGTGKRRDLVVI 248

Query: 767 KGLKLKPA 774
           +G+ L  A
Sbjct: 249 QGVGLVDA 256


>gi|160943405|ref|ZP_02090639.1| hypothetical protein FAEPRAM212_00896 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445265|gb|EDP22268.1| hypothetical protein FAEPRAM212_00896 [Faecalibacterium prausnitzii
           M21/2]
          Length = 438

 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 54/439 (12%), Positives = 125/439 (28%), Gaps = 29/439 (6%)

Query: 341 VYIW-SLTLDKITASIMNFLVS--MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
              W +            FL    +K     L          S+  +             
Sbjct: 11  WPDWYNGKKIDEVQFGRAFLEQWPLKCVNGTLYTLDGPVEDESEIKQRILENIEEYVTSG 70

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
            + K  +  ++++        SD        +  Q+G+  L  G   +    L+      
Sbjct: 71  LSKKVTNILETIK----LLAFSDPFPIEQDCIHFQNGVYHLPDGSFQESR--LFCQNRLP 124

Query: 458 TPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
             +     S   +L  +    +  + +      +G  L+   K Q+ + I G GG GKS 
Sbjct: 125 VRYDPKAASPDRWLTFLHELLDDAD-IPTLQEYLGYCLIPSTKGQKMMLIVGKGGEGKSR 183

Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
           +  ++K   G+                 +      +   L    ++I  + + N      
Sbjct: 184 IGLVLKRLMGDAA---------SNGSVQKVENNRFARADLERRLLMIDDDMDMNALPKTN 234

Query: 577 KIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
            IK +   +  +        +Y     +            + +  D ++RR +++     
Sbjct: 235 YIKTIVTAEAKLDLERKGVQSYQRDIYARFLCFGNGALTSLYDHSDGFFRRQLILTTKDK 294

Query: 636 IANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
            A+R D  F  +           W L+G+   +       + E      +  ++ ++   
Sbjct: 295 PADRTDDPFLVEKMCAELEGILLWCLEGLHRLVQNNFRFTVSERAAANVDTIKRSSNNVI 354

Query: 695 AWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGG 750
            +++         +    S    + Y  + E         +S    +  L+Q  + +   
Sbjct: 355 DFMESEGYFRFKADYSISSKDFYEIYKLWCEDNAC---HSVSAIRFSAELRQNDRRYNLE 411

Query: 751 IKREKIEKEWKSKRIIKGL 769
                     +  R   G+
Sbjct: 412 ATNNIYLPGGRRVRGFVGI 430


>gi|15897095|ref|NP_341700.1| primase (carboxy-end fragment) [Sulfolobus solfataricus P2]
 gi|13813270|gb|AAK40490.1| Primase (Carboxy-end fragment) [Sulfolobus solfataricus P2]
          Length = 532

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 71/486 (14%), Positives = 140/486 (28%), Gaps = 71/486 (14%)

Query: 343 IWSLTLDKITASIMN-FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
           I  + +      I   F   +++    L E   D   +             +  V   + 
Sbjct: 17  IIGIFIWNKEKGIFEPFENRLRKKARALLEYYTDLANDE-----------LKPYVISKTI 65

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV---------KPTKELYI 452
             +    ++  ++       L +    +   +  L+ +              + T E + 
Sbjct: 66  IDNVVDEIKDKTLIP-----LPNEPLRVAFPNCTLEWKISHGRYVPSFVLAEERTPEHFA 120

Query: 453 TKSTGTPFV--------------EGEPSQEFLDLVSGYFES---------EEVMDYFTRC 489
                                     P     DL                 E        
Sbjct: 121 FHYIPHKIHLEELVKINEEVLSARDIPIDLIEDLARRLCPKSLEVFKQWANEKWVTLFEI 180

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +G  L    + ++   I G  G+GKST +NLIK   G   V+N     +  ++       
Sbjct: 181 IGYTLFPKIEFRKAFMILGPRGTGKSTFINLIKKLLGRGNVVNIPLHILFGDKN------ 234

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
              L  L    +  +SET E +  +   +K +TGGD +TA + + +            I 
Sbjct: 235 RFVLAELYHKLVNAVSETKEYNLDDMDTLKVLTGGDRITADVKFKDP-ITFTPYAKLVIA 293

Query: 610 PNKHLFVRN-PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
            NK   +R+  D A+W R+++I F     +  A   +              +      + 
Sbjct: 294 SNKPPTIRDKNDMAFWHRWLIIEFPNQFEDNTAWGDKTFTEDELEGILTVSILAFSRVLL 353

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE-------NLWEESHSLAKSYSEY 721
            G   D  +   + +       D    ++ +    GE       + +     L + Y EY
Sbjct: 354 HG-KFDFEQTEEEVRGIWLSTIDYVYKFVKEKLKHGEIMITKNADDYVRVKELYRMYLEY 412

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                       + +     L+       +       E K  R + G+K+     +    
Sbjct: 413 CSTNG---YNATTYKGFVRRLRD---YFNLTVVMKNVEGKRFRAVVGIKINTVQTNETTG 466

Query: 782 SNIIDF 787
            +  +F
Sbjct: 467 GDYGEF 472


>gi|168032336|ref|XP_001768675.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680174|gb|EDQ66613.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 419

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 60/373 (16%), Positives = 122/373 (32%), Gaps = 59/373 (15%)

Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
           + ++    +                  ++ +   K    +           +LLDS    
Sbjct: 68  IYDDKFITDVCESYMETIEPATKIIDFIQSSDNRKKMMYTCAGMLYKEGFEELLDSKRDV 127

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLDLVSGYFESEEVMD 484
           +G + G+ D    +      + YIT ST   FV  + +     E LDL++  F +E++  
Sbjct: 128 IGMKSGVYDFTEDRFRMMELDDYITLSTRISFVPLDYNSEATNEVLDLLAKVFSNEDIRR 187

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
           YF R +   L G N  + F    G G + K+ +++LI+  FG+  +    +  + +    
Sbjct: 188 YFMRFISSCLEGRNTNKIFSIWSGSGDNRKTIMVSLIEQVFGDYAIKMPTSLLMEKR--- 244

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                                              ++TG D +  R  Y       P + 
Sbjct: 245 -----------------------------------EITGNDSLYVRGLYKEGTI-IPQTA 268

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-------------RDASFAQKLETKY 651
              ++ N+   +   D A W R  ++PF     +             +D +F+ K+   +
Sbjct: 269 KFILIANRIPQMSMFDKAVWSRIRIMPFVSTFVDKIELSHDLLTTHLKDINFSNKIYF-F 327

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                K  ++  K Y++ GL  + P       E      + +  ++    +         
Sbjct: 328 APVFMKLVIEEYKQYLTYGL--EEPNEVKDCTEIICVSNNIFGQFLSANVEKNNKNIVAI 385

Query: 712 HSLAKSYSEYREQ 724
             L   Y  + + 
Sbjct: 386 KELYDLYKYWSKD 398


>gi|284175976|ref|ZP_06389945.1| primase (carboxy-end fragment) [Sulfolobus solfataricus 98/2]
          Length = 523

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/486 (14%), Positives = 140/486 (28%), Gaps = 71/486 (14%)

Query: 343 IWSLTLDKITASIMN-FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
           I  + +      I   F   +++    L E   D   +             +  V   + 
Sbjct: 8   IIGIFIWNKEKGIFEPFENRLRKKARALLEYYTDLANDE-----------LKPYVISKTI 56

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV---------KPTKELYI 452
             +    ++  ++       L +    +   +  L+ +              + T E + 
Sbjct: 57  IDNVVDEIKDKTLIP-----LPNEPLRVAFPNCTLEWKISHGRYVPSFVLAEERTPEHFA 111

Query: 453 TKSTGTPFV--------------EGEPSQEFLDLVSGYFES---------EEVMDYFTRC 489
                                     P     DL                 E        
Sbjct: 112 FHYIPHKIHLEELVKINEEVLSARDIPIDLIEDLARRLCPKSLEVFKQWANEKWVTLFEI 171

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +G  L    + ++   I G  G+GKST +NLIK   G   V+N     +  ++       
Sbjct: 172 IGYTLFPKIEFRKAFMILGPRGTGKSTFINLIKKLLGRGNVVNIPLHILFGDKN------ 225

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
              L  L    +  +SET E +  +   +K +TGGD +TA + + +            I 
Sbjct: 226 RFVLAELYHKLVNAVSETKEYNLDDMDTLKVLTGGDRITADVKFKDP-ITFTPYAKLVIA 284

Query: 610 PNKHLFVRN-PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
            NK   +R+  D A+W R+++I F     +  A   +              +      + 
Sbjct: 285 SNKPPTIRDKNDMAFWHRWLIIEFPNQFEDNTAWGDKTFTEDELEGILTVSILAFSRVLL 344

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE-------NLWEESHSLAKSYSEY 721
            G   D  +   + +       D    ++ +    GE       + +     L + Y EY
Sbjct: 345 HG-KFDFEQTEEEVRGIWLSTIDYVYKFVKEKLKHGEIMITKNADDYVRVKELYRMYLEY 403

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                       + +     L+       +       E K  R + G+K+     +    
Sbjct: 404 CSTNG---YNATTYKGFVRRLRD---YFNLTVVMKNVEGKRFRAVVGIKINTVQTNETTG 457

Query: 782 SNIIDF 787
            +  +F
Sbjct: 458 GDYGEF 463


>gi|160939409|ref|ZP_02086759.1| hypothetical protein CLOBOL_04302 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437619|gb|EDP15381.1| hypothetical protein CLOBOL_04302 [Clostridium bolteae ATCC
           BAA-613]
          Length = 459

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 113/360 (31%), Gaps = 24/360 (6%)

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478
           +        +   +G L L+ G   K   +  +       +    P    +L  + G   
Sbjct: 88  EDFPPEPDRIHLSNGTLFLD-GTFAKGKPK-IVRNRFPVSYKPNAPKPVLWLQFLDGLL- 144

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             E +      +G  L+  NK QR + I+G GG GKS +  ++   FG          ++
Sbjct: 145 YPEDIPTLQEYIGYCLIPSNKGQRMMVIKGSGGEGKSQIGAVLGTLFG---------FNM 195

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597
                 +  +   +   L    + +  +           +K + T    M        +Y
Sbjct: 196 KDGSIGKISENRFARADLEHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSY 255

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEA 655
                +            + +  D ++RR +V+   +  A R  D   A+K+        
Sbjct: 256 QGWMCARLLAFSNGDLQALFDRSDGFYRRQLVLTTKEKPAGRVDDPDLAEKM-KAEVEGI 314

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHS 713
             W  +G++   +        +     +E  ++  +    ++D         +L   S  
Sbjct: 315 LLWAFEGLQRLAANNFKFTESQRTKDNREAVKRDNNNVYDFLDSDGYVRRKADLSASSKE 374

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           L ++Y  Y  +      K    R+ +  L   Q  +             +  R   G+++
Sbjct: 375 LYEAYQIYCTENNLPALKP---RSFSEALIACQSRYNLEYCNNVTNAAGRRVRGFLGIEV 431


>gi|229824159|ref|ZP_04450228.1| hypothetical protein GCWU000282_01463 [Catonella morbi ATCC 51271]
 gi|229786513|gb|EEP22627.1| hypothetical protein GCWU000282_01463 [Catonella morbi ATCC 51271]
          Length = 703

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 108/322 (33%), Gaps = 20/322 (6%)

Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMAL 494
             +E G+  +   E +        +      Q   D ++   +  +++       +G  +
Sbjct: 386 YRIEGGKVKEGAVEDFTPYLLDVAYDPKAYDQTVDDFLNFLVKDRQDLRLIIEELLGHII 445

Query: 495 LGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           +      +   + G  GG+GKST + ++    G           +  N   E  K + S+
Sbjct: 446 MLQGFPHKVFFLVGEKGGNGKSTFLEMLNNFVGE----------LGSNINLENFKDHTSV 495

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             L G  + I  + + +    +   K +  G+ +  R  Y   +       T     N  
Sbjct: 496 ASLEGKLVNIGDDIDASYMEKSQIFKTLASGNKVALRPIYKEPF-TLKNRATLIFTANDM 554

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAKKWFLKGVKAYISKGLD 672
              ++      RR +++P D  +   D    +KL +           L+G++     G  
Sbjct: 555 PVFKDKTGGIERRLVILPCDNVVKTADFEIDKKLSSDQAKSYILNLALQGLERIRRNGGK 614

Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
           +   E      E   + +DT  ++I++    G +   +   +   Y +Y  +      K 
Sbjct: 615 LSESETLKHELESYMEDSDTVLSYINN---KGIDPNMDRKMVYSDYVQYCAEIGQTPHKA 671

Query: 733 ISTRTVTLNLKQKGFIGGIKRE 754
           I        LK KG+     R 
Sbjct: 672 I---AFGKRLKAKGYETRETRR 690


>gi|62464803|ref|YP_220367.1| replication initiation protein [Sulfolobus neozealandicus]
 gi|56562187|emb|CAH89324.1| replication initiation protein [Sulfolobus neozealandicus]
          Length = 866

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 102/713 (14%), Positives = 231/713 (32%), Gaps = 107/713 (15%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKLP---ACGFGFVCGVGE 62
             A+  + +G  +IP++  DK+P      +++E+  + E+I++         G VCG   
Sbjct: 3   SYAQLYLKHGLSVIPIKYKDKKPALESWKEYQERQSTEEEIERWFSSGKYNVGIVCGKAS 62

Query: 63  QPLYAFDIDSKDEKTANTFKDTFEILH-GTPIVR-------IGQKPKILIPFRMNKEGIK 114
             L   D D K       F   +E +    P +R       +      +  +   K+ + 
Sbjct: 63  NNLVVLDFDEKRG-----FDKWYEYIDANYPHIRDMILSTWLEDTHNGVHVYLRVKDAVI 117

Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
           +          LDI G G Y VA         EY++   P          ++++  + + 
Sbjct: 118 RSSKVGDK---LDIKGDGGYVVATPSLHPEGTEYSFRLGPS--DGAKIIEITKKQFDEIL 172

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNN-NNRQYTNREITAFLSCFGEEFYNGSHDE----- 228
           K  +E+ +   +D K     +      +  +Y   E  + +    +E Y   +       
Sbjct: 173 KTLREVGLIKSEDTKEERKERANAARVSGFRYLKEEDLSKVIGLAKEGYKEGYRNQLCMF 232

Query: 229 ---WIPVVM-----------AVHHETRG----SSKGKEIARRWSKQGSTYD------EEN 264
              W+ V             A+H + +     +++ K I   ++K G          E+ 
Sbjct: 233 LSGWLAVAGIHPLQAVKIIKALHDDGKDEEPLANRCKPIVYSYAKAGYDLTQFREEMEKE 292

Query: 265 FNYK---WDTFDF---EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSI 318
                  W+                 +          + + + L  +   +     +   
Sbjct: 293 CGGNLSGWNATGAISGVRGVQQILNATVGKDKALIIIRQLQEALGTASPYEDAVFEILDY 352

Query: 319 YKKGHFLYTADTKAWYK-KDKNNVYIWS-----------LTLDKITASIMNFLVSMKEDV 366
            +  + +   + K   +    +  Y                 +     I  +       V
Sbjct: 353 SRDLYVVANPEEKVVVRAYSTDKEYKEKEVVIEAYPTAVEVYENPVGGITKYRTVWASKV 412

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
                E      +  +         + +++  N+ +      ++ G   ++  +  +S  
Sbjct: 413 RQKPIEVGPATADEIADYLRAEGVVKHKDLVYNTVSALLMGYIKYG--KAVIKNEFESPG 470

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485
            +L   +G ++    +  KP++E              + ++ +   +   F    V+ + 
Sbjct: 471 FYLN--NGKIEPSRVEIRKPSREELREALELLD----DLAERWFSHIKDKF--AMVVKWG 522

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
                G          +++++ G+  SGK+TL  +I   +G              NR P+
Sbjct: 523 IISPFGYVYKQKGSWIKWLYLFGISKSGKTTLAEMIMKIWG-------------INRAPK 569

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM-------TARLNYGNT-Y 597
           +G    ++ RL G+ ++  +  +  +E      +     D +       TAR  Y +  Y
Sbjct: 570 SGANIDNVARL-GAVLMQGTYPDVINEPGDVLKENSPLIDPIKNAIEQKTARGAYRHGNY 628

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
            E P+        N    V   D +  RR+I++ FD+ +++   +   K    
Sbjct: 629 VELPSLAMLVFTSN---RVYPKDSSLIRRFIIMNFDEQLSDDKIAEFDKNVRP 678


>gi|329729096|gb|EGG65507.1| nucleoside triphosphatase, D5 family [Staphylococcus epidermidis
           VCU144]
          Length = 499

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/400 (14%), Positives = 133/400 (33%), Gaps = 26/400 (6%)

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
           I    MNFL+  +E+   L+   E+    ++            +    ++KA      + 
Sbjct: 65  ILIENMNFLLFDEEENTKLAMYQEERGVYTQKTSLIKRIISYLEPKHNSNKADDVIYHIR 124

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
             +     ++    S   +   +G+ + +T Q    +     T    T +++      F 
Sbjct: 125 NRTEIKEKTN----SPYLIPVNNGVFNRKTKQLENFSPNYVFTSKIDTNYIDNPNKPTFD 180

Query: 471 DL-VSGYFE-----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
           D  ++ +F+      ++V     + +  +L G    ++ I + G G +GK T   L+   
Sbjct: 181 DWDINKWFDELACNDKQVSHLLWQVINDSLNGNYTRKQSIFMVGDGNNGKGTFQELLTNL 240

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTG 583
            G + +   + ++               +  L G   VI  +      I+     K +  
Sbjct: 241 IGKKNIATLKVNEFD---------HRFKMSLLEGKTAVIGDDVPVGVYIDDGSNFKSVVT 291

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
           GD ++       +Y  +    +     N     ++  +A ++R +++PF+          
Sbjct: 292 GDYVSVEFKNQQSY-TAQFRCSVIQSSNGMPRFKDKTNAVFKRLVIVPFNADFKGDKEKR 350

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
             K E     +  ++ L    A         IP+V  K  +  +Q  +    +  +  D 
Sbjct: 351 KIKDEYIKNKQVLEYIL--YHAIRMDFEKFSIPDVSKKYLDVYKQENNPVYEFKINVFDE 408

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
            +      + +   Y E+ +         +S        K
Sbjct: 409 WKLRKIPKYIVYGLYKEFCKDNG---YNFLSKIKFHKEFK 445


>gi|262200579|ref|YP_003271787.1| P4 family phage/plasmid primase [Gordonia bronchialis DSM 43247]
 gi|262083926|gb|ACY19894.1| phage/plasmid primase, P4 family [Gordonia bronchialis DSM 43247]
          Length = 739

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 112/335 (33%), Gaps = 28/335 (8%)

Query: 425 SSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLD----------L 472
               +  ++G++D   G     +   +          +     +  F             
Sbjct: 250 DRDLIACRNGVVDYNGGSPVFHEFDPKYVFLAKLDVDWNPDAQNPVFDTPDGDQWDVESW 309

Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVI 531
           ++   +  EV+D   + +G      N   + +      G +GK TL++L++   G     
Sbjct: 310 MASLSDDPEVVDLLWKGIGAIARPYNSWNKAMFFYSRKGNNGKGTLLSLMRNMLGVGNYA 369

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTAR 590
           +   +D  ++           L  L  +  +++ E +    +  AA  K +   D +T  
Sbjct: 370 SIPLADFGKD---------FLLEPLTRANAILVDENDVGTFVEKAANFKAVITNDVITIN 420

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
             Y    +     F      N     ++  ++ +RR I +PF+K     +  + +    +
Sbjct: 421 RKYKAPIAHQHFGF-MVQCLNDEPVFKDKSESIYRRQIFVPFEKCFTGAERKYIKDDYLR 479

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
              E  ++ L+  +       ++  P     A  + R+  D  +A+ ++   + +     
Sbjct: 480 -RPEVLEYVLR--RVLTMDYYELPEPAAVQAALNQFRESNDPVRAFWNENQMLFQWDLLP 536

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
              L + Y  +  + +  + K I        L Q 
Sbjct: 537 FPFLHEFYVAWMGRYM-PNSKPIGKNKFISELVQL 570


>gi|330507945|ref|YP_004384373.1| phage/plasmid primase, P4 family [Methanosaeta concilii GP-6]
 gi|328928753|gb|AEB68555.1| phage/plasmid primase, P4 family [Methanosaeta concilii GP-6]
          Length = 378

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 100/314 (31%), Gaps = 15/314 (4%)

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
             DS    +  ++G+ + +TG+ +  T + Y        F           +++     E
Sbjct: 12  KFDSDLSIINMENGLYNWQTGKFLPHTPDYYSVIQIPVRFDPDARCPNIDKMIN-IVADE 70

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           +            L      Q+   + G GG+GKS  +++++   G+    N    D+ +
Sbjct: 71  KDRMKCYEMFAYCLYRSYPIQKMFVLFGPGGTGKSYFLDVVQRMLGDVNCSNVSMQDLAK 130

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGNTYSE 599
           +R   +         L      I  + +       A +KQ+T   D + A+      +  
Sbjct: 131 DRFASSD--------LYKKLANICGDLDNTAMYQVATLKQLTSNKDRIRAQRKGEKAF-N 181

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLE-TKYTLEAK 656
                 P    N     ++    ++RRY +IPF         D  F   L          
Sbjct: 182 FVNFAKPIFSANHLPSSKDDTSGFYRRYEIIPFMHVFGADEIDQDFLDSLTSDAEISGLF 241

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
              +  +   + +    +       AK   +  +   +++ D             + LA 
Sbjct: 242 NKVVSILCDLLVRNAFTNQ-LNIEDAKSMYKDRSAPEESFFDQFVVEVPGETIAKNMLAM 300

Query: 717 SYSEYREQELNYDR 730
            ++EY E      R
Sbjct: 301 YFNEYCEILGLPKR 314


>gi|269975282|gb|ACZ55506.1| primase [Staphylococcus phage SA1]
          Length = 554

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 108/324 (33%), Gaps = 23/324 (7%)

Query: 6   WKEQAKQAIHNGFKLIPL------RLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCG 59
           W+E  +    NG+ ++P+      + G  +      WE  +   E+I +          G
Sbjct: 4   WQEYGETLWGNGYTVVPIYAPDADKKGAGKRPIGKDWERTINDKEQIQRWAERYTKNGIG 63

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
           +  +   A DID  DE       D      G    RIG++PK L  FR      K K   
Sbjct: 64  ILTKYTPAVDIDVYDEDAVAHMADWVLENVGRAPCRIGREPKKLFLFRTESPFSKVKSGV 123

Query: 120 EST----QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE---DTPLLSEEDVEY 172
                  +  ++IL  GQ FVAY IHP T ++Y W    +        D   +S +    
Sbjct: 124 WEDDFGQRHAVEILADGQQFVAYGIHPDTNRDYYWLDDENPLNNAADFDLEEISLDTARE 183

Query: 173 LFKFFQEITVPL----------VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222
           +   F                   +       + W      +  +           +   
Sbjct: 184 IAAEFDRYAKEQGWTMVKRPMNGYEAIGTADEEDWAATAGIRKWDGTYEDLRDLVMKYPN 243

Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
              ++ +I V+ A+    R   + K IAR W+ Q   +D+ +F YKWD            
Sbjct: 244 PEDYENYIKVLAALQISCRDQDEAKSIAREWAMQAHNFDDGDFEYKWDKGFAHNASRLVT 303

Query: 283 KRSTFTSLFYHHGKLIPKGLLASR 306
             S  T +         +  +  R
Sbjct: 304 LGSIITEVREIEKAEQEEKAVEYR 327


>gi|293369974|ref|ZP_06616541.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634892|gb|EFF53414.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 554

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/521 (13%), Positives = 163/521 (31%), Gaps = 53/521 (10%)

Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFS------DAYNKAMFSIYKKGHFLYTADTKAWYK 335
                   +      +  K   A          D   +   +I  +         K+   
Sbjct: 64  DNPDMLDFIAKLREDVENKSENAKDAKKTLKELDPSTEVKAAIIIENLLKVCEKKKSGIG 123

Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
               N+Y ++    ++    +     +K  +  ++E+    +  +   RF      +   
Sbjct: 124 VINGNIYYYNSYYWELLEENL-----VKNYLSMVAEQSGLPHFQASKVRFIDLLYKQLLA 178

Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYIT 453
                 + S+   ++                  +  ++G      G       + E  +T
Sbjct: 179 TAALPMSASSTNEVK------------------INLKNGTFKCYDGKFDFCDFSPEDRLT 220

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
                 F     + +F+  +      +E        +        + ++ + + G GG+G
Sbjct: 221 YQLPFEFNRNAKADKFMLFLEEVIPEKEARMLVAEYIAYIFAKHLRWEKCLVLLGSGGNG 280

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KS L++++    G Q V +   S + +       +        +G+ ++       +   
Sbjct: 281 KSVLIDIVTALLGEQNVCHFSLSRLCEANGYYRAE--------IGNYLLNACSEMGSKNT 332

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF---IVPNKHLFVRNPDDAWWRRYIVI 630
           +   +KQ+   D ++AR  YG   + S      F    + NK +        ++RRY+ +
Sbjct: 333 DPEMVKQLFSNDPVSARSPYGKPVTVSNYCRFLFSANFISNKDME---QTIGYFRRYLFL 389

Query: 631 PFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYIS-KGLDVDIPEVCLKAKEEER 687
            F+  I    ++ + A+++  +       W L+G+K  +          +      +   
Sbjct: 390 EFNATIPEWKKNPNLAREIIEEELSGVFNWVLEGLKRILEPNRKGFTYSKHIDNTNKRIE 449

Query: 688 QGTDTYQAWI-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           + +++   ++ D+         EE+ +L   Y  + E          S       L+ + 
Sbjct: 450 RNSNSVALFMCDENLQPSSEKHEEAKTLYDRYKNFCEDNH---YGVASKHEFLRRLETQL 506

Query: 747 FIGGIKREKIEKEW-KSKRIIKGLKLKPAFESVDDNSNIID 786
                +R      W   + + K  K K  F        II+
Sbjct: 507 KYCVKRRTTNNATWVYCETVKKTEKDKNEFVEKFKAEGIIN 547


>gi|291539832|emb|CBL12943.1| phage/plasmid primase, P4 family, C-terminal domain [Roseburia
           intestinalis XB6B4]
          Length = 516

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 60/448 (13%), Positives = 147/448 (32%), Gaps = 44/448 (9%)

Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
           KK +  +YIW+    +           ++E    L +E +      K   ++       +
Sbjct: 100 KKIEEKLYIWNGKYYRQLNEE----SFVREARSVLPKEMQ------KRIPYYNRFQDTYK 149

Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
            ++ N       +  +             ++   +  Q+GI + E    +  T +  +  
Sbjct: 150 YMQANGSLTGEFKKKDVA-----------TAKHMIVFQNGIYNAEKDALINSTSKYPVLF 198

Query: 455 STGTPFVEGEPS--QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
                ++  E         ++        + ++ F +C+G     G +A++F        
Sbjct: 199 EINAEYLGNEEVQTPYMDKIIMQATGGDVDTLERFYQCLGYIYSQGTEAKKFFVFGTAPD 258

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN- 570
           SGKS +   I    G   +     ++           +   L  +    +    +     
Sbjct: 259 SGKSIIGEFIAKTIGEGNISTISLNEF---------GSRFKLGSISQRILNYNMDLPAGM 309

Query: 571 -DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
            D+ +   +K +TG   +     Y                 N  + ++  D+A++ R ++
Sbjct: 310 LDKKSVQLLKLLTGDAKIDCEEKYVQ-NRTVTHHCKFLFATNHPIQLKEDDEAFYHRMLL 368

Query: 630 IPFDKPIANRDASFAQ-KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           IPF K IA+ +  ++  +   K             +            E+  +   E R+
Sbjct: 369 IPFVKSIADENRDYSMPEKLWKERHAIATRAAHAYRDLYRNNFVFHESELADRMLNEWRE 428

Query: 689 --GTDTYQAWIDDCCDI---GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
                  + +   CC++    E+ +  + +L K+Y ++  ++  + R   S +     L 
Sbjct: 429 NCRQKCLKEFFYQCCEVVKEREDAFVPTDALFKAYRKFCAEKDIHIRD--SDKPQFSRLF 486

Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           +  F     + +++          G++L
Sbjct: 487 KNTFGIASTKRRVDGYNSPVNGYLGIQL 514


>gi|301321603|gb|ADK68993.1| Predicted ATPase [Gordonia sp. KTR9]
          Length = 740

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 112/336 (33%), Gaps = 33/336 (9%)

Query: 424 SSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGE-----------PSQEFL 470
            +   +   +GI+D   G  Q +  + E          +                  +  
Sbjct: 262 DNRDLIAVNNGIIDYNDGDPQFIDFSPEFIFLAKLDVAWNPDARNVVIHNDTDGTDWDVE 321

Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQY 529
             +    +  EV++     +G  +       R        G +GK TL++L++   G Q 
Sbjct: 322 SWMESLSDDPEVVELLWEIIGATVRPYVSWNRCAFFYSEQGNNGKGTLLSLMRNLIGVQS 381

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMT 588
             +   +D  ++           L  L  +  +++ E +    I  AA  K +   D +T
Sbjct: 382 YASVPLADFGKD---------FLLEPLTRASAILVDENDVGTFIEKAANFKAIVTNDVIT 432

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648
               Y +  +     F      N    +++  ++++RR + +PF K     +  + +   
Sbjct: 433 INRKYKSPIAHQHFGF-MVQCLNDKPTIKDKSESFYRRQLFVPFTKCFTGAERRYIKDDY 491

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
                +  ++ LK  +        +  P+    A E+ ++  D  +A+ ++    GE  W
Sbjct: 492 LT-RADVLEYVLK--RVLTMSYYSLSEPQAVKDALEDFKESNDPIRAFWNE--VKGEFRW 546

Query: 709 --EESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
                      Y  +  + +  + K +       +L
Sbjct: 547 DLVPFPFAYDLYKAWMARNM-PNSKPLGRNKFIDSL 581


>gi|282890934|ref|ZP_06299448.1| hypothetical protein pah_c032o008 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499149|gb|EFB41454.1| hypothetical protein pah_c032o008 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 248

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 20/245 (8%)

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK------IKQMTGGDCMTAR 590
              +   P           L G  + I++E  E  EI          +K +  G+  TA 
Sbjct: 4   LTSRQFSPCQFDNRFQRAHLFGKLVNIVTEIAEGAEIAEGAEIADAALKAIVSGERTTAE 63

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLE 648
             + N + +     T +   N     R+  DA +RR I++ F++      RD    QKL+
Sbjct: 64  HKHKNPF-DFHPYSTCWFGANHMPHCRDFSDAIFRRAIILSFNQKFEGPGRDVHLRQKLQ 122

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
                      L+G+     +G +         AK   R   D  + ++ D C+I  +L 
Sbjct: 123 M-EISGILNLALEGIAGVFERG-EFTYCPSSEAAKRNWRFECDQVEQFVTDACEIASSLR 180

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
             S  + KSY+++ ++     ++ +    +T  L++ G           +    KR++ G
Sbjct: 181 SSSLDIFKSYTDWAKEMG--VKRILGHNGLTQRLQKLGVE-------TSRGTNGKRMLSG 231

Query: 769 LKLKP 773
           + +K 
Sbjct: 232 ISIKS 236


>gi|313885599|ref|ZP_07819349.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619329|gb|EFR30768.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 701

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/526 (15%), Positives = 172/526 (32%), Gaps = 48/526 (9%)

Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF--SDAYNKAMFSIYKKGH 323
           + K+++         ++    +    Y + +     L A            +   + + +
Sbjct: 197 HKKFESVTPLNKRQASQIIRAYIDREYENLQEYGNALSAISVIGKAVLTGEIQEEWAREY 256

Query: 324 F-LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE----------DVFDLSEE 372
             L   D K W ++++  +  +     K    I +      +          +VF+ S+E
Sbjct: 257 VELLALDNKEWAEENQQKLNEFLG---KQVDDIYSNYTFKDKFSAPSSSDKFNVFEFSQE 313

Query: 373 -PEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSL------EAGSIFSITSDLLDS 424
              D        + +       R N     +A + +Q L      E     +  S+  + 
Sbjct: 314 FARDYQVYYYRDKLYVKQDIVWRSNENSILRAINESQQLTRASDNEVIHQLTKISEEFEG 373

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESEEVM 483
               +   +G   ++ G+ VK   + +        +     S++  D ++    +  E+ 
Sbjct: 374 DIDSIQLANG-FQVKGGKIVKGAVDNFTPYLLDVDYNPNAYSKDVDDFLNFLVMDRPELR 432

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                 +G  +L            G  G +GKST + ++    G+          +  N 
Sbjct: 433 VTVEELLGHIILLKGFPHSVFFFVGRSGANGKSTFLEMLNEWVGD----------MGSNI 482

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
             +A     S+  L    + I  + + +    +A  K +  G+ +  R  Y  T      
Sbjct: 483 SLDAFSDPTSIGELEDKIVNIGDDIDASYLDKSANFKALASGNTIMIRPIY-QTPRRLKN 541

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY-TLEAKKWFLK 661
           + T     N+    ++      RR +++P D  +   D     KL TK          LK
Sbjct: 542 TATLLFTANEMPTFKDKTGGIARRLVIVPCDNVVKKADFDLVSKLTTKEAKSYLLNLALK 601

Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
           GVK     G  +    V     ++  + +D+   ++D+   I  NL  +   + + Y  +
Sbjct: 602 GVKNIAHNGGKITDNGVVNSMVQDYLEKSDSVAMYVDEE-GITPNL--DKKLVYQDYLNF 658

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
                 Y  K     + T  L   G+     ++  +   + K  IK
Sbjct: 659 CSA---YGMKPQKVTSFTQKLIDLGY---RVKDTYQMNKRVKLYIK 698


>gi|254520503|ref|ZP_05132559.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226914252|gb|EEH99453.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 534

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/509 (13%), Positives = 160/509 (31%), Gaps = 34/509 (6%)

Query: 281 AKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
           +          Y   +   + L         +     + K  +     ++K     +K  
Sbjct: 42  SDNEEILLKECYLDNEYEEEELFNKETKYEEDIFENLVSKSSNKKREKESKFLINFNKRK 101

Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK--NSKSPRFWFNTDYRR-QNVE 397
             + +   +KI     N  + + E+++   E      +  + +   F +           
Sbjct: 102 RVVVTYIANKIINE--NKFICINEEIYLYLENLGYYKRLSDQEIRVFVYKFISLENCKHF 159

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
            +S  +S    ++         + +      +  + G+ D+ + + +    +        
Sbjct: 160 NSSDIESIIYFIKISDKIQKNMNDIKRHRNLVNTKSGVYDIRSKKILPHDHKYMFFSVVN 219

Query: 458 T-----PFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
                  + +   +  F   ++      EE+        G  L   N+ ++F  + G GG
Sbjct: 220 AEYNIQNYNDNFYNSRFYKFLNEITLGDEELKQRLKEITGYCLCNANQMRQFYILIGDGG 279

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           +GKS  +NL+    G +   N + + +   +          +  L    + I SE ++  
Sbjct: 280 NGKSIFLNLLMTLVGEENTSNIQLNQLSDQK---------YIAELANKMVNIGSELSDIK 330

Query: 572 EINAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD----AWWRR 626
             + + IK +    D +  R  Y   +S            N    + N +     A++ R
Sbjct: 331 LGDTSAIKSLVNDTDKVICRPLYKQPFS-FVNYCKLIFATNNLPELNNKNYKNNTAFFNR 389

Query: 627 Y--IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
              I      P+  +D +   +L  +       W L+G++       ++   E+  +   
Sbjct: 390 AIIIPFNNIIPVEKQDKNLNNQL-RREIDLVLVWALEGLEKVRKNKWNLSECEISTRYSL 448

Query: 685 EERQGTDTYQAWIDDCCDIGENLWEE--SHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
           E R      + ++ +   I            L      +  +E   D           NL
Sbjct: 449 EYRDSQSYIERFLKERIRIDIENKNYMFKSDLKDELERFCIEEG-IDSNISDGMKYLHNL 507

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
             K    GIK +KI    K+++   G+ L
Sbjct: 508 IIK--KYGIKYKKIRIGDKTRQGYIGICL 534


>gi|295105113|emb|CBL02657.1| phage/plasmid primase, P4 family, C-terminal domain
           [Faecalibacterium prausnitzii SL3/3]
          Length = 439

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 113/357 (31%), Gaps = 22/357 (6%)

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478
           +     +  +   +G L L+     +   E  +       +    P    +L  +S    
Sbjct: 83  EDFPPVTDRIALANGTLHLD-DTFQEGKPE-IVRNRLPVRYDPKAPQPVHWLRFLSDLL- 139

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             E +      +G  L+  NK QR + I+G GG GKS +  ++   FG          ++
Sbjct: 140 YPEDIPTVQEFIGYCLIPSNKGQRMMVIKGSGGEGKSQIGVVLSQLFGC---------NM 190

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597
                 +  +   +   L  + + +  +           +K + T    M        +Y
Sbjct: 191 KDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERKGKQSY 250

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEAK 656
                +            + +  D ++RR +++   DKP++  D     +          
Sbjct: 251 QGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAEVEGIL 310

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSL 714
            W  +G++  +  G      +   + +E  ++  +    +++      +  +    S  L
Sbjct: 311 LWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADACTSSKEL 370

Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGL 769
            + Y  + E+        I  R  +  L   Q  +        +    +  R   G+
Sbjct: 371 YEVYKMWCEEN---SLNAIKARGFSDALIANQSRYNLESTNNIVNSSGRRVRGFVGI 424


>gi|307591304|ref|YP_003900103.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822]
 gi|306986158|gb|ADN18037.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822]
          Length = 999

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 72/553 (13%), Positives = 165/553 (29%), Gaps = 96/553 (17%)

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT- 327
           W+T       D    R++   + Y +  LIP     +     +  +  +++    +    
Sbjct: 428 WNTIRGHLGEDAEAFRASLE-MKYGNSSLIPNDEKDNLGLPVWAASNIAVWLAERYRCVL 486

Query: 328 ---ADTKAWYKKDKNNVYIWSLT----LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
                 + WY+    +  +WS      + +I  + +  L  +++ + + ++         
Sbjct: 487 AWNTQIEEWYRYAAQSEGVWSKEPKYYIWQIIITELETLADIRQQLDEKNQ--------- 537

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
                              + + +    +E      +     D +   L   +G+ +LET
Sbjct: 538 -----------------RPTYSSNFVTGIETLLKAHLAVRGWDETEGLLPFNNGVKNLET 580

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNK 499
           G+    +    +T      +      +  +D +       E+++ +    +   +     
Sbjct: 581 GEFSPHSPGFRLTWCLPYNYDPLATCEPIVDWLKVMTKGDEQIIQFIRAHLNAVVTSRVD 640

Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
            Q ++ + G GG+GK T+  L     G++  I+    ++ +NR            RL  +
Sbjct: 641 IQSYLELIGPGGTGKGTITRLATALIGDRNTISTTLRNLEENR--------FDTARLYNA 692

Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
           R+V+I++  +    + + +K +TG D +     +              I  N+ +   + 
Sbjct: 693 RLVVITDAEKWGG-DVSVLKALTGQDKLRYEEKFKQPLDGFYFRGRVMICANEPIQSADY 751

Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKL--------ETKYTLEAKKWFLKGVKAYISKGL 671
                RR   +     I  +       L           Y      W L          +
Sbjct: 752 TSGLERRRQTVYMTNKIPLKSQKTLISLNNKGVTGDFVPYLPGLMNWVLS---------M 802

Query: 672 DVDIPEVCLKAK-------EEERQ----GTDTYQAWIDDCCDIGENLWEESHS------- 713
                E  +K         +  +      T+    W+D    I  N              
Sbjct: 803 SPSDTEQIIKETPTLHHQFQYYKAQILTETNPIADWMDVSVVIRNNYRSPIGVANRDKSS 862

Query: 714 ------------LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
                       L  +Y+++         K +S R     L        +     +   +
Sbjct: 863 DSPNWFLNTDRWLYANYAQFCHATGA---KAVSVRRFVNLLHDLSL-NQLNLNVTKGRDR 918

Query: 762 SKRIIKGLKLKPA 774
               + GLKL+  
Sbjct: 919 YGAYLLGLKLRDD 931


>gi|255323694|ref|ZP_05364822.1| putative prophage DNA primase [Corynebacterium tuberculostearicum
           SK141]
 gi|255299184|gb|EET78473.1| putative prophage DNA primase [Corynebacterium tuberculostearicum
           SK141]
          Length = 636

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 114/338 (33%), Gaps = 23/338 (6%)

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-------- 471
             +D++       +G+ + +TG+    + +        T +                   
Sbjct: 187 RRVDTTQDIAPFANGVYNYDTGEFKPYSPDQTHLFKFATKWNPDAEMPVIEQEDGTVWRP 246

Query: 472 --LVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGN 527
              +   F   EE+     + +G  L   N   +   +    G +GK TL+ LI+   G+
Sbjct: 247 DEWLESLFGGDEELALSMWQVIGAHLRPYNSFDQAAILMSPKGSNGKGTLLQLIESLVGS 306

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDC 586
               +     + Q            + R++G   VI  E N      +A+  K +   D 
Sbjct: 307 HNTAHIPLDAMEQ---------RFGMHRVIGKCAVIADENNVGAYHTSARNFKALVTADT 357

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
           +T       +  +           N +L V +  D+ +RR + IPF +   +   + A +
Sbjct: 358 LTIDRKNR-SVVDYRPFVQVTQCFNDNLRVADDSDSLFRRQLFIPFPQTFLDSKRNPAIR 416

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
            +     E  +W  K V   I             + K E++      + +ID+  D   +
Sbjct: 417 EDYVKRPEVLEWVAKHVLLEIPSYKRFTESTASKELKIEQKLVNSPIREFIDENYDSFVH 476

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
            +     L + Y  +    ++   K  S +  T  L++
Sbjct: 477 DFIPLKCLYQIYKAWYADTVSDRGKAASKKAFTNELRR 514


>gi|319939549|ref|ZP_08013909.1| DNA primase [Streptococcus anginosus 1_2_62CV]
 gi|319811535|gb|EFW07830.1| DNA primase [Streptococcus anginosus 1_2_62CV]
          Length = 483

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 94/281 (33%), Gaps = 18/281 (6%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG------EPSQEFLDLVSGY- 476
           S    +  ++GI DL+    +  +    I     T + +       +   +F + +    
Sbjct: 122 SDRNLIPVKNGIFDLKRKALLPFSPSYIIKSKINTAYHDKPMKPILDKWFDFDEWLKSIA 181

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
              E+++    + +  A+       +   + G G +GK T  +L+    G + + N + +
Sbjct: 182 CNDEDIVTLLWQIMNEAINPNYTRGKMAILYGEGNNGKGTFQSLLINLIGAKNISNLKPN 241

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
              +         +  L  L G    I  + +       + +  +  GD +     +   
Sbjct: 242 QFEE---------SFQLSALEGKVCNIGDDISNKYLDEVSDLMSVVTGDSVHVNPKHQQP 292

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           Y E+          N+    R  +  W+RR  ++PF+     +      K +        
Sbjct: 293 Y-EAVYKCFCLFSGNELPKARAKNQGWYRRLCIVPFNADFNGQKEKPEIKNQYLKDERLL 351

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
           +W L  +     K      P+   +   E +   D Y +++
Sbjct: 352 EWVLYRILNL-EKFDKFIEPQAVKELLSEYKINNDFYFSFV 391


>gi|172054865|ref|YP_001806192.1| hypothetical protein cce_4778 [Cyanothece sp. ATCC 51142]
 gi|171701146|gb|ACB54126.1| hypothetical protein cce_4778 [Cyanothece sp. ATCC 51142]
          Length = 704

 Score =  166 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 55/394 (13%), Positives = 117/394 (29%), Gaps = 28/394 (7%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT----LDKITASIMNFLVS 361
           ++++      F    K   ++   T  W+        IW       L+K     +  L  
Sbjct: 311 KWNEEGLTLYFEELYKDRLIFEDATGEWHLYSAEKEGIWGKISKIQLEKRIILELRELKQ 370

Query: 362 MKEDVF-----DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
             E +       +    E N    +          ++    E +         +   I  
Sbjct: 371 KFEQINGQIAGAIKSVKESNRSREEKKDIIEQLKAQKPTYREITINFVEKLGKKLSRILL 430

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
           +T    ++    +  ++G+LD+ET      +   Y T S    +      +     +   
Sbjct: 431 VTEMACNAHKGLIPFRNGVLDIETRDLWPHSPTNYFTWSLPYDYNPLATGEPIKQWLLEM 490

Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
               E +++     +   + G    Q+F+ + G GG+GKSTL+ L     G         
Sbjct: 491 MQGDESLVELVRAYLHGVVTGRADWQKFLELIGPGGTGKSTLIRLAIALVGFSNCHVTTL 550

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +  ++             +   R+V++++       +   +K +TG D +        
Sbjct: 551 KRLETSK--------FETANIKDKRLVLVTDAERYTG-DVTTLKALTGEDSLPYEKKMQQ 601

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE------- 648
                       I  N+H+   +      RR I +   + I+  +     K +       
Sbjct: 602 ATGGFKPDCLVIIAGNEHIKTSDYTSGLQRRRITVGMRRKISEENQRNLIKHDNQGNISG 661

Query: 649 --TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
               Y      W L+      S+ +         
Sbjct: 662 EFVPYIPGFLNWVLEMESEKASECIKNAHSRCVK 695


>gi|295101357|emb|CBK98902.1| phage/plasmid primase, P4 family, C-terminal domain
           [Faecalibacterium prausnitzii L2-6]
          Length = 439

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 115/357 (32%), Gaps = 22/357 (6%)

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478
           +     +  +   +G L L+ G   +   E  +       +         +L  +S    
Sbjct: 83  EDFPPVTDRIALANGTLYLD-GTFQEGKPE-IVRNRLPVRYDPKAAQPTHWLRFLSDLL- 139

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             E +      +G  L+  NK QR + I+G GG GKS +  ++   FG          ++
Sbjct: 140 YPEDIPTVQEFIGYCLIPSNKGQRMMVIKGSGGEGKSQIGVVLSRLFGC---------NM 190

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597
                 +  +   +   L  + + +  +           +K + T    M        +Y
Sbjct: 191 KDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERKGKQSY 250

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEAK 656
                +            + +  D ++RR +++   DKP++  D     +          
Sbjct: 251 QGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAEVEGIL 310

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSL 714
            W  +G++  +  G      +   + +E  ++  +    +++      +  +    S  L
Sbjct: 311 LWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADACTSSKEL 370

Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGL 769
            + Y  + E+        I +R  +  L   Q+ +        +    +  R   G+
Sbjct: 371 YEVYKMWCEEN---SLNAIKSRGFSDALIANQRRYNLESTNNIVNSSGRRVRGFVGI 424


>gi|239622967|ref|ZP_04665998.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522619|gb|EEQ62485.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 450

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/467 (11%), Positives = 138/467 (29%), Gaps = 36/467 (7%)

Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIW-SLTLDKITASIMNFLVSM-KEDVFDLSEEPED 375
           ++ +    Y   +K   +    ++ +W              FL       V         
Sbjct: 1   MWHERKRRYCPMSKEAAQNPSADIAVWFDGKAINEVIFCEEFLRDYPMITVNGTFFTVNG 60

Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
              +    +       R +    ++ AK     L+   +    +DLL      +   +G 
Sbjct: 61  IVNDENRLK--KEIYDRIKPYVTSNIAKRVTNLLDVMRMECCAADLL-LYQDRIHVANGT 117

Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMAL 494
             L+     +   + Y        +    P    +L  +S   E E+++      +G   
Sbjct: 118 YHLDGTFSTE---KDYCRNRLPVAYHPEAPQPVTWLHFLSQLLEPEDILT-LQEFIGYCF 173

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
           +   K Q+ + + G GG GKS +  +++   G         +++      +   +N +  
Sbjct: 174 IPSTKGQKMLMLTGKGGEGKSRIGVVLRALLG---------TNMKTGSVAKVETSNFARA 224

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKH 613
            L    +++  +           IK +   +  M        +Y          +     
Sbjct: 225 DLEHELLMLDDDMKLEALPQTNNIKAIITAELPMDLERKRQQSYQGDLYVRFIGLGNGVL 284

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL-----EAKKWFLKGVKAYIS 668
             + +    ++RR I++        +D +          +         W L+G+   I+
Sbjct: 285 QALHDRSVGFFRRQIIL----TTKEKDPNRKDDPYIAEKMTAEAEGIFLWALEGLHRLIA 340

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWI--DDCCDIGENLWEESHSLAKSYSEYREQEL 726
                 + +  L    +     +    ++  +       +    S +L   Y ++ +   
Sbjct: 341 NDFRFTLSQSALDNLNDAVSDGNNIIDFLASEGYIRFRADYEASSKNLYAVYKQWCDDN- 399

Query: 727 NYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKEWKSKRIIKGLKL 771
                 +S ++    LKQ    +      +      +  R   G++L
Sbjct: 400 --ALNSLSQKSFGSFLKQNESRYNLEYTNKVNIGGGRFARGFVGIEL 444


>gi|315221878|ref|ZP_07863790.1| phage/plasmid primase, P4 family protein [Streptococcus anginosus
           F0211]
 gi|315189111|gb|EFU22814.1| phage/plasmid primase, P4 family protein [Streptococcus anginosus
           F0211]
          Length = 513

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 94/281 (33%), Gaps = 18/281 (6%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG------EPSQEFLDLVSGY- 476
           S    +  ++GI DL+    +  +    I     T + +       +   +F + +    
Sbjct: 152 SDRNLIPVKNGIFDLKRKALLPFSPSYIIKSKINTAYHDKPMKPILDKWFDFDEWLKSIA 211

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
              E+++    + +  A+       +   + G G +GK T  +L+    G + + N + +
Sbjct: 212 CNDEDIVTLLWQIMNEAINPNYTRGKMAILYGEGNNGKGTFQSLLINLIGAKNISNLKPN 271

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
              +         +  L  L G    I  + +       + +  +  GD +     +   
Sbjct: 272 QFEE---------SFQLSALEGKVCNIGDDISNKYLDEVSDLMSVVTGDSVHVNPKHQQP 322

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           Y E+          N+    R  +  W+RR  ++PF+     +      K +        
Sbjct: 323 Y-EAVYKCFCLFSGNELPKARAKNQGWYRRLCIVPFNADFNGQKEKPEIKNQYLKDERLL 381

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
           +W L  +     K      P+   +   E +   D Y +++
Sbjct: 382 EWVLYRILNL-EKFDKFIEPQAVKELLSEYKINNDFYFSFV 421


>gi|160944691|ref|ZP_02091918.1| hypothetical protein FAEPRAM212_02205 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443875|gb|EDP20879.1| hypothetical protein FAEPRAM212_02205 [Faecalibacterium prausnitzii
           M21/2]
          Length = 441

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 115/357 (32%), Gaps = 22/357 (6%)

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478
           +     +  +   +G L L+ G   +   E  +       +    P    +L  +S    
Sbjct: 85  EDFPPVTDRIALANGTLYLD-GTFQEGKPE-IVRNRLPIRYDPKAPQPSHWLRFLSDLL- 141

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             E +      +G  L+  NK QR + I+G GG GKS +  ++   FG          ++
Sbjct: 142 YPEDIPTVQEFIGYCLIPSNKGQRMMVIKGSGGEGKSQIGVVLSRLFGC---------NM 192

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597
                 +  +   +   L  + + +  +           +K + T    M        +Y
Sbjct: 193 KDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERKGKQSY 252

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEAK 656
                +            + +  D ++RR +++   DKP++  D     +          
Sbjct: 253 QGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAEVEGIL 312

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSL 714
            W  +G++  +  G      +   + +E  ++  +    +++      +  +    S  L
Sbjct: 313 LWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADACTSSKEL 372

Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGL 769
            + Y  + E+        I  R  +  L   Q+ +        +    +  R   G+
Sbjct: 373 YEVYRMWCEEN---SLNAIKARGFSDALIANQRRYNLESTNNIVNSSGRRVRGFFGI 426


>gi|220915119|ref|YP_002490424.1| hypothetical protein Mnod_7767 [Methylobacterium nodulans ORS 2060]
 gi|219952973|gb|ACL63358.1| hypothetical protein Mnod_7767 [Methylobacterium nodulans ORS 2060]
          Length = 846

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 100/683 (14%), Positives = 186/683 (27%), Gaps = 100/683 (14%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP---ACGFGFVCG--- 59
           W++       N ++ + ++ G+KRP      +  + ++ +++          G + G   
Sbjct: 19  WRDYGDALRTNKWRAVHIQHGEKRPLLKEWPQRGVPTAAEVETWQRPERASMGLILGPQP 78

Query: 60  --VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG----- 112
               ++ + A D D      A    +  E        R+G   K+   F   K       
Sbjct: 79  SLPPDEHVVAVDADVFTPAAATAVNEILERRLPGAPHRLGNPAKVGTRFVRTKTADGSEP 138

Query: 113 ---------IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK--VED 161
                          T+     +++LG GQ  V +  HP     Y W +     +    +
Sbjct: 139 VRRQGRRFIFDGAPDTKENHNRVELLGQGQQSVVHGTHPC-GVAYAWPSGTSIVEMHPSE 197

Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIP-SKTWTNNNNRQYT---NREITAFLSCF 217
            PL+  +++  +                S    S++  N      T        A LS  
Sbjct: 198 LPLIPIDELNAIIAECDTAMEAAGGVLVSGATFSRSGRNGGGADLTALVEANAEALLSGL 257

Query: 218 GEEFYN-GSHDEWIPVVMAVH-------HETRGSSKGKEIARRWSKQGSTYDE------E 263
            +   +  S + W+    A          E R +        RW     T D        
Sbjct: 258 ADTRNDISSRNRWVMFTKAFAALCLPALGEDRVAEALFRFTDRWETAPGTADMEEIRRII 317

Query: 264 NFNYKWDTFDFEEIGDTAKKRST------FTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317
               K       E+    ++R           L +    +    +  +         +  
Sbjct: 318 REEDKPAQMGLREVFHMMRERGAPLPGNFLARLDFEGVPVNDNDMPGATGRAPRAPKVAP 377

Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377
                H    +     Y   +N      +       S+ + +        +   +    +
Sbjct: 378 ADMPEHVSALSAMNGRYAVARNGGST-VVLRFGPEGSVPSMMTKTAFMDLEAPNKITGPD 436

Query: 378 KNS-KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
                    WF    RR   E             A     +T + L      L    G +
Sbjct: 437 ARRHPIAPAWFGWSGRRTYPEGV-----------AMWPQGVTGEGLPVPEGALNTWQGFV 485

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVGMAL 494
                                TP   G         +        + +  +    +  A 
Sbjct: 486 --------------------STPAAAGSDWPTIRAYLRDVICAGDQSLFAWLMNWLAHAA 525

Query: 495 -LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
                K       +G  GSGK+T  NL++  F   +V++A      +      GK N   
Sbjct: 526 QRPHEKPGTAPIFKGPQGSGKTTFTNLLRAIFHPAHVVSA------ERPEALLGKHN--- 576

Query: 554 IRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
             L  +  V+  E     D     ++K M     +T      +     P+     +  N+
Sbjct: 577 AHLREALFVMADEAVFAGDPAANNRLKAMVTDATLTIEPKGIDA-VSVPSFHRFVMTSNE 635

Query: 613 HLFVRNPDDAWWRRYIVIPFDKP 635
              +R   DA  RR+ V  FD  
Sbjct: 636 DHVIRAEADA--RRWAV--FDVS 654


>gi|319788914|ref|YP_004090229.1| hypothetical protein Rumal_3920 [Ruminococcus albus 7]
 gi|315450781|gb|ADU24343.1| hypothetical protein Rumal_3920 [Ruminococcus albus 7]
          Length = 425

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 122/377 (32%), Gaps = 30/377 (7%)

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS- 466
            +         S+ +     F+  Q+G LDL+      P +E    +     +     + 
Sbjct: 63  QIMDALRLYTYSEPIPPDMNFIHVQNGKLDLQGNFY--PNREFCTNR-LNICYDPNIRNG 119

Query: 467 ----QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
               ++F+  +      E+V+      +G  L+   K Q+ + + G GG GKS +  +++
Sbjct: 120 AYYPEQFMTFLLELLTPEDVVT-LQEYLGYLLIPSTKGQKMMFLIGQGGEGKSRIGIVLR 178

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
             F +        + +  N              L    ++I  +       +   IK + 
Sbjct: 179 EIFRD--------NMLTGNIHR-IETDRFFRYNLKDRLLMIDDDMQMQALSSTGYIKNLV 229

Query: 583 GGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639
             +  +        +      +            + +    + RR I++    P   R  
Sbjct: 230 TAETPIDVEAKGKQSEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TLPPPERRI 288

Query: 640 -DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
            D   A+K       +   W   G+   ++      I +   +   E  Q       +++
Sbjct: 289 IDPYIAEK-FIAEKEKIFCWMYDGLLRLLANNYRFTISDRARQNVMETMQDNCNITEFLE 347

Query: 699 --DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-K 755
             D    GE L   S +L  SY  + +       KR    T T  +KQ      IK    
Sbjct: 348 DTDRVMYGEKLCVSSAALYDSYYRWCDDNALTALKR---DTFTSWVKQNSDQFSIKYTNN 404

Query: 756 IEKEWKSKRIIKGLKLK 772
           I    K+ R  +G+ +K
Sbjct: 405 ISVGGKTVRGFRGIAIK 421


>gi|76787223|ref|YP_330673.1| prophage Sa05, P4 family DNA primase [Streptococcus agalactiae
           A909]
 gi|76562280|gb|ABA44864.1| prophage Sa05, DNA primase, P4 family [Streptococcus agalactiae
           A909]
          Length = 480

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 94/286 (32%), Gaps = 19/286 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  Q+GI+DL T + +  + +  IT    T +   +          F D ++      
Sbjct: 121 YLIPVQNGIIDLRTKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 180

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+   +   +F    G G +GK T    +    G   V   +     
Sbjct: 181 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNVSALKPVQFA 240

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           +           +L  L+G    I  E       N + +  +T GD +      G    E
Sbjct: 241 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 290

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
           +          N      N    W+RR +++PF+            K +     +  ++ 
Sbjct: 291 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNDFLGKKKVLEYA 350

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG 704
           L               P+      EE ++  D   +W+ ++  + G
Sbjct: 351 LYKAIN-QESFTHFIEPQAVKGLLEEYQEDNDYLLSWVKNEYMEKG 395


>gi|55822742|ref|YP_141183.1| DNA primase, phage associated [Streptococcus thermophilus CNRZ1066]
 gi|55738727|gb|AAV62368.1| DNA primase, phage associated [Streptococcus thermophilus CNRZ1066]
          Length = 500

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 99/297 (33%), Gaps = 24/297 (8%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  Q+GILDL+  + +    +  IT    T +   +   +      F D ++      
Sbjct: 142 NLVPVQNGILDLKNKELLPFNPKYVITSKIATAYKPPKSIPKDREGNTFDDWLNSIACGD 201

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+       +F    G G +GK T   L+    G   V   + +   
Sbjct: 202 SELVTLFWQIILEAINPNYTRNKFAIFYGDGNNGKGTFQRLLINLIGESNVSALKPAQFS 261

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
                       +L  L+G    I  E   +   N + +  +T GD +      G    E
Sbjct: 262 DK---------FNLETLVGKVCNIGDEAPNDYLKNPSDLMSITSGDTVLVNPK-GRPAFE 311

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKW 658
           +          N      N    W+RR +++PF+     + +  + +           ++
Sbjct: 312 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGQTEKPWIKNEFLADKD-VLEY 370

Query: 659 FLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
            L   K    +       P+      EE ++  D    +I +  +   N W E   +
Sbjct: 371 VL--YKTVNQEPFTHFIEPKAVKDLLEEYQEDNDYLLDFIRN--EYIPNGWHELDVV 423


>gi|218132428|ref|ZP_03461232.1| hypothetical protein BACPEC_00287 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992766|gb|EEC58768.1| hypothetical protein BACPEC_00287 [Bacteroides pectinophilus ATCC
           43243]
          Length = 414

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/395 (11%), Positives = 122/395 (30%), Gaps = 26/395 (6%)

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
            +       ++            K  +  + L+  +         D     +   +G L 
Sbjct: 3   DDLPLRGEIYDKLKFCAVNNIPRKITNILEVLKLEAQVPDFPPEQDR----IHVFNGTL- 57

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           L  G   +      +       +    P+   +L+ ++G     E +      +G  L+ 
Sbjct: 58  LLNGTFTEGRPA-IVRSRLPVVYNPDAPAPVIWLNFLNGLLH-AEDIPTLQEFIGYCLIP 115

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
            NK QR + I+G GG GKS +  ++   FG         +++      +  +   +   L
Sbjct: 116 SNKGQRMMVIKGNGGEGKSQIGAVLSAIFG---------TNMKDGNIGKISENRFARADL 166

Query: 557 MGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
               + +  +           +K + T    M        +Y     +            
Sbjct: 167 EHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSYQGWMFARLLAFSNGDLQA 226

Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
           + +  D ++RR +V+   +   +R  D   A+K+          W  +G++  ++    +
Sbjct: 227 LYDRSDGFYRRQLVLTTKEKPVDRADDPDLAEKM-KAEAEGIFLWAFEGLQRLVANNFKL 285

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
              +   + +E  ++  +    +++         +    S    + Y  + E+       
Sbjct: 286 TESDRIRENREAVKRDNNNIFDFMESEGYIRRKADASISSKEFYEIYRMWCEENSLA--- 342

Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
            +  R+ +  +        ++          +R+ 
Sbjct: 343 PLKARSFSDAMIANAKKFNLEHCNNITNSAGRRVW 377


>gi|295102180|emb|CBK99725.1| phage/plasmid primase, P4 family, C-terminal domain
           [Faecalibacterium prausnitzii L2-6]
          Length = 439

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 114/357 (31%), Gaps = 22/357 (6%)

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478
           +     +  +   +G L L+ G   +   E  +       +         +L  +S    
Sbjct: 83  EDFPPVTDRIALANGTLYLD-GTFQEGKPE-IVRNRLPVKYDPKAAQPVHWLRFLSDLL- 139

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             E +      +G  L+  NK QR + I+G GG GKS +  ++   FG          ++
Sbjct: 140 YPEDIPTVQEFIGYCLIPSNKGQRMMVIKGNGGEGKSQIGVVLSRLFGC---------NM 190

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597
                 +  +   +   L  + + +  +           +K + T    M        +Y
Sbjct: 191 KDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERKGKQSY 250

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEAK 656
                +            + +  D ++RR +++   DKP++  D     +          
Sbjct: 251 QGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAEVEGIL 310

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSL 714
            W  +G++  +  G      +   + +E  ++  +    +++      +  +    S  L
Sbjct: 311 LWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADACTSSKEL 370

Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGL 769
            + Y  + E+        I  R  +  L   Q+ +        +    +  R   G+
Sbjct: 371 YEVYKMWCEEN---SLNAIKARGFSDALIANQRRYNLESTNNIVNSSGRRVRGFIGI 424


>gi|260589348|ref|ZP_05855261.1| putative primase [Blautia hansenii DSM 20583]
 gi|260540429|gb|EEX20998.1| putative primase [Blautia hansenii DSM 20583]
          Length = 458

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/450 (14%), Positives = 142/450 (31%), Gaps = 38/450 (8%)

Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387
             ++ W++  + +   +     +        L  +    F       D+    +  R   
Sbjct: 29  PYSQGWFEDGQIDEVAFCENFLQRMP-----LKCINGIFFSYDGMLPDSEVEKEIYRMVK 83

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447
               +              + L         S+ L      +   +G   L         
Sbjct: 84  PVLTK--------GISKKVKQLLEVLKLEAYSEELPVQMDRIHVNNGTYFLNGDFTE--- 132

Query: 448 KELYITKSTGTPFV-EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
           K+ +        +  +    + +L  +S   E ++ +      +G  L+  NKAQ+ + I
Sbjct: 133 KKEFCLNRLPVNYEMKEAKPERWLKFLSELLEEDD-ISTLQEYMGYCLIPSNKAQKLLII 191

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G GG GKS +  +++   G   +  +    +  NR         +   L    +++  +
Sbjct: 192 LGKGGEGKSRIGLVMRKILGT-NMNVSNIQKVEHNR--------FARANLEYRLLMVDDD 242

Query: 567 TNENDEINAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
                  +   IK +    D M        +   +               + +    ++R
Sbjct: 243 MKLEALKDTNYIKTIVTLEDKMDLERKSKQSVQGNLYVRFLCFGNGSLSALHDRSYGFYR 302

Query: 626 RYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
           R I++       +R  D    +KL+     +   W L+G+K  +       I E   K  
Sbjct: 303 RQIILTVKDVPPDRVDDPYLIEKLQR-EADDIFLWCLEGLKRLLKNKYRFTISERAKKNL 361

Query: 684 EEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
            E  +  +   A++       + EN    S +L ++Y  + E       K +S ++ +  
Sbjct: 362 HEAMESGNNIIAFMQSSGYIRLEENTTATSKNLYQAYCRWCEDNTE---KPMSAKSFSGY 418

Query: 742 LK--QKGFIGGIKREKIEKEWKSKRIIKGL 769
           LK  +K +             K+ R  +G+
Sbjct: 419 LKENEKKYHIHYSTNIPSDNGKNARGFQGI 448


>gi|291562404|emb|CBL41220.1| phage/plasmid primase, P4 family, C-terminal domain
           [butyrate-producing bacterium SS3/4]
          Length = 463

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/395 (12%), Positives = 120/395 (30%), Gaps = 26/395 (6%)

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
            +       ++            K  +  + L+  +         D     +   +G L 
Sbjct: 52  DDLPLRGEIYDKLKFCAVNNIPRKITNILEVLKLEAQVPDFPPEQDR----IHLSNGTL- 106

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           L  G   +      +       +    P+   +L  + G     E +      +G  L+ 
Sbjct: 107 LLNGTFTEGRPT-IVRNRLPVVYNPHAPTPVTWLKFLDGLLH-AEDIPTLQEFIGYCLIP 164

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
            NK QR + I+G GG GKS +  ++   FG         +++      +  +   +   L
Sbjct: 165 SNKGQRMMVIKGNGGEGKSQIGAVLSTIFG---------TNMKDGSIGKISENRFARADL 215

Query: 557 MGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
               + +  +           +K + T    M        +Y     +            
Sbjct: 216 EHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSYQGWMFARLLAFSNGDLQA 275

Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
           + +  D ++RR +V+   +   +R  D   A+K+    +     W  +G++  ++     
Sbjct: 276 LYDRSDGFYRRQLVLTTKEKPVDRADDPDLAEKM-KAESEGIFLWAFEGLQRLVANNFKF 334

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
              +   + +E  ++  +    ++D         +    S    + Y  + E+       
Sbjct: 335 TESDRIRENREAVKRDNNNIFDFMDSEGYIQRKADASISSKDFYEIYRMWCEENSLA--- 391

Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
            +  R+ +  +        ++          +R+ 
Sbjct: 392 PLKARSFSDAMIANAGRFNLEHCNNITNSAGRRVW 426


>gi|291556152|emb|CBL33269.1| phage/plasmid primase, P4 family, C-terminal domain [Eubacterium
           siraeum V10Sc8a]
          Length = 457

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 49/395 (12%), Positives = 121/395 (30%), Gaps = 26/395 (6%)

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
            +       ++            K  +  + L+  +         D     +   +G L 
Sbjct: 52  DDLPLRGEIYDKLKFCAVNNIPRKITNILEVLKLEAQVPDFPPEQDR----IHLSNGTL- 106

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLG 496
           L  G   +      +       +    P+ E + + + G     E +      +G  L+ 
Sbjct: 107 LLDGTFTEGRPA-IVRSRLPVAYNPNAPAPEIWQNFLDGLLH-AEDIPTLQEFIGYCLIP 164

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
            NK QR + I+G GG GKS +  ++   FG         +++      +  +   +   L
Sbjct: 165 SNKGQRMMVIKGNGGEGKSQIGAVLSSIFG---------TNMKDGSIGKISENRFARADL 215

Query: 557 MGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
               + +  +           +K + T    M        +Y     +            
Sbjct: 216 EHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSYQGWMFARLLAFSNGDLQA 275

Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
           + +  D ++RR +V+   +   NR  D   A+K+          W L+G++  ++     
Sbjct: 276 LYDRSDGFYRRQLVLTTKERPVNRADDPDLAEKM-KAEAEGIFLWALEGLRRLVASNFKF 334

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
              +   + +E  ++  +    +++         +    S    + Y  + E+       
Sbjct: 335 TESDRIRENREAVKRDNNNIFDFMESEGYIRRKADASISSKDFYEIYRMWCEENSLA--- 391

Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
            +  R+ +  +        ++          +R+ 
Sbjct: 392 PLKARSFSDAMIANAGRFNLEHCNNITNSAGRRVW 426


>gi|153812927|ref|ZP_01965595.1| hypothetical protein RUMOBE_03334 [Ruminococcus obeum ATCC 29174]
 gi|149831005|gb|EDM86095.1| hypothetical protein RUMOBE_03334 [Ruminococcus obeum ATCC 29174]
          Length = 459

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 49/367 (13%), Positives = 116/367 (31%), Gaps = 24/367 (6%)

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-SQEFLDLVSGYFE 478
           +     +  +   +G +    G  +       +       +    P +  +L  +     
Sbjct: 91  EDFPPEANKIHLANGTI-YIDGTFIPEKP-DIVRMRLPVNYNPDTPEASTWLSFLDQLL- 147

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             E +      +G  L+  NK QR + I+G GG GKS +  ++    G         S++
Sbjct: 148 YPEDIPTLQEFIGYCLIPSNKGQRMMIIKGNGGEGKSQIGAVLNSLLG---------SNM 198

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597
                 +  +   +   L    + +  +         + +K + T    M        +Y
Sbjct: 199 KDGSIGKISENRFARADLEHILLCVDDDMRMEALKQTSYVKSIVTAQGKMDLERKGKQSY 258

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAK 656
                S            + +  D ++RR +V+   +  A+R D  +  +   K      
Sbjct: 259 QGWLFSRLLAFSNGDLQALYDRSDGFYRRQLVLTAKEKPADRVDDPYLAEKMKKEAESIF 318

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSL 714
            W  KG++  + +             +E  ++  +    +++              S  L
Sbjct: 319 LWAFKGLQRLVRQNFKFTESPRIKANRENVKRDNNNVLEFLESEGYIRFQAEASASSKEL 378

Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII--KGLKL- 771
            +SY  + E+        +   + +  +        ++     K    +R+    G+K+ 
Sbjct: 379 YESYRLWCEENSMTA---LKNCSFSDAMIAVQAKYNLEHCNTIKNSAGRRVWGFTGVKVI 435

Query: 772 -KPAFES 777
            KP++  
Sbjct: 436 TKPSYTD 442


>gi|317056910|ref|YP_004105377.1| hypothetical protein Rumal_2258 [Ruminococcus albus 7]
 gi|315449179|gb|ADU22743.1| hypothetical protein Rumal_2258 [Ruminococcus albus 7]
          Length = 457

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 121/366 (33%), Gaps = 30/366 (8%)

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-----QEFLDLV 473
           S+ +     F+  Q+G LDL+      P +E    +     +     +     ++F+  +
Sbjct: 106 SEPIPPDMNFIHVQNGKLDLQGNFY--PNREFCTNR-LNICYDPNIRNGAYYPEQFMTFL 162

Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
                 E+V+      +G  L+   K Q+ + + G GG GKS +  +++  F +      
Sbjct: 163 LELLTPEDVVT-LQEYLGYLLIPSTKGQKMMFLIGQGGEGKSRIGIVLREIFRD------ 215

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLN 592
             + +  N              L    ++I  +       +   IK +   +  +     
Sbjct: 216 --NMLTGNIHR-IETDRFFRYNLKDRLLMIDDDMQMQALSSTGYIKNLVTAETPIDVEAK 272

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQKLET 649
              +      +            + +    + RR I++    P   R   D   A+K   
Sbjct: 273 GKQSEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TLPPPERRIIDPYIAEK-FI 330

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENL 707
               +   W   G+   ++      I +   +   E  Q       +++  D    GE L
Sbjct: 331 AEKEKIFCWMYDGLLRLLANNYRFTISDRARQNVMETMQDNCNITEFLEDTDRVMYGEKL 390

Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-KIEKEWKSKRII 766
              S +L  SY  + +       KR    T T  +KQ      IK    I    K+ R  
Sbjct: 391 CVSSAALYDSYYRWCDDNALTALKR---DTFTSWVKQNSDQFSIKYTNNISVGGKTVRGF 447

Query: 767 KGLKLK 772
           +G+ +K
Sbjct: 448 RGIAIK 453


>gi|191639830|ref|YP_001988996.1| RepA protein [Lactobacillus casei BL23]
 gi|190714132|emb|CAQ68138.1| RepA protein [Lactobacillus casei BL23]
 gi|327383940|gb|AEA55416.1| Phage/plasmid primase, P4 family [Lactobacillus casei LC2W]
 gi|327387122|gb|AEA58596.1| Phage/plasmid primase, P4 family [Lactobacillus casei BD-II]
          Length = 528

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 137/407 (33%), Gaps = 20/407 (4%)

Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
           E     ++  +        YR  ++    +        E     S   +  +     +  
Sbjct: 125 EFTKTTESRTTKEMLKWGLYRESDITGARRFLQRISYNEDYGKRSPFDE--NPHPELVAF 182

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEG-EPSQEFLDLVSGYFESEEVMDYFTRCV 490
            +G   + T +  + + + Y+  +         +   E   L++       +   F   +
Sbjct: 183 TNGTYSILTNKMQESSADNYMLNAHEYAVDPDRDDCPETERLLAAMMGDAAI--TFEEFI 240

Query: 491 GMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           G       +  Q F+ + G GG GKSTL+  I    G   V  ++ +D+        G  
Sbjct: 241 GYMFYRSYRPFQAFLWLYGTGGEGKSTLIRRITNLIGRDNVSASKPADLAN------GDR 294

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G    I+++   +   + A IK +TGGD + A       + +          
Sbjct: 295 RFETANLYGKEANIVADVGSDYLKSTAAIKSLTGGDYIAAEFKGIQNF-KFMNYAKLLFS 353

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS- 668
            N+     +    +  R  VI            + Q  + K   E  ++ +K +  +   
Sbjct: 354 ANEMPAFSDHSSGFADRVTVIKMINGDTRHTHWWDQFDDAKMDEETPRFAMKCMHMFAKA 413

Query: 669 -KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQE 725
            K   +  P+  + A +E     D ++ ++D   +I   E+  E S  +   Y  + +  
Sbjct: 414 LKSGGLTKPDSVVNASQEWLDANDHFKEFLDQYAEINLNEDRGEVSTVVTAEYKRFCQDN 473

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW-KSKRIIKGLKL 771
              D+   +T+ +T  L   G      R   + +   + R   GL+L
Sbjct: 474 NYMDKT--TTQAITKKLDAYGVKKVNSRRGFDNDTFGNTRRYIGLRL 518


>gi|116627642|ref|YP_820261.1| phage DNA polymerase [Streptococcus thermophilus LMD-9]
 gi|116100919|gb|ABJ66065.1| Phage DNA polymerase, contains ATPase domain [Streptococcus
           thermophilus LMD-9]
 gi|312278167|gb|ADQ62824.1| Phage DNA polymerase, contains ATPase domain [Streptococcus
           thermophilus ND03]
          Length = 501

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 22/282 (7%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  Q+GILDL+  + +    +  IT    T +   +   +      F D ++      
Sbjct: 142 NLVPVQNGILDLKNKKLLPFNPKYVITSKIATAYKPPKSIPKDREGNTFDDWLNSIACGD 201

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+       +F    G G +GK T   L+    G   V   + +   
Sbjct: 202 SELVTLFWQIILEAINPNYTRNKFAIFYGDGNNGKGTFQRLLINLIGESNVSALKPAQFS 261

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
                       +L  L+G    I  E   +   N + +  +T GD +      G    E
Sbjct: 262 DK---------FNLETLVGKVCNIGDEAPNDYLKNPSDLMSITSGDTVLVNPK-GRPAFE 311

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKW 658
           +          N      N    W+RR +++PF+     + +  + +           ++
Sbjct: 312 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGQIEKPWIKNEFLADKD-VLEY 370

Query: 659 FLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDD 699
            L   K    +       P+      EE ++  D    ++ +
Sbjct: 371 VL--YKTVNQEPFTHFIEPKAVKDLLEEYQEDNDYLLDFLKN 410


>gi|134287274|ref|YP_001110970.1| ATPase [Heliothis virescens ascovirus 3e]
 gi|133722182|gb|ABO37304.1| ATPase [Heliothis virescens ascovirus 3e]
          Length = 1052

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 76/334 (22%), Positives = 138/334 (41%), Gaps = 16/334 (4%)

Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLS 370
           +N  ++   +    L   +   WY K + +V  +   L+++  S M  +    ED    S
Sbjct: 574 FNGNIWKPVRNDEALIRKELPIWYDKFEEHVSEY---LERLAESGMGAVPHGDED----S 626

Query: 371 EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG 430
                 +  + + R + +   + +N    S   +  ++L      +  S  +D +   + 
Sbjct: 627 NGGRGPSVVTVAKRKFLSVRRKCKNSAPQSGVITQIRALNTHDAGAYKSTKMDDNDNIIA 686

Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-----QEFLDLVSGYFESEEVMDY 485
            +D +   +T    K T E  I++     +V  +       +   D  +  F   EV +Y
Sbjct: 687 FKDMVFCRDTLTLRKGTPEDMISRCLNCNYVPYDELTDEVRKFVNDFFTSLFPDPEVKEY 746

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
           F   V     G N  ++++   GVG +GKS L+ + +   G   V  +++  I      +
Sbjct: 747 FLLSVAQIFRGSNIFKQYMVWTGVGNNGKSVLIRMFECLLGPLLVKLSKSVLISNKM--D 804

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESPAS 603
            G  NP + +L G R+ +  E   +D+IN  + K ++G D   AR  Y          A 
Sbjct: 805 VGSVNPDMCKLQGVRLAVTDEIAGSDDINVGQAKLLSGNDTFMARDLYMKSAEMEPIKAQ 864

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           F P IV N    +R PD+A W+R+ +IPFD    
Sbjct: 865 FIPIIVCNDLPSLREPDEAAWKRFHIIPFDSYFT 898


>gi|16905404|gb|AAL31318.1|L00966_1 ATP/GTP binding site motif A [African swine fever virus]
          Length = 348

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 59/317 (18%), Positives = 110/317 (34%), Gaps = 27/317 (8%)

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
              +  A+  G K    +   G G +GK+ LM L+    G+ Y      S +   R   A
Sbjct: 1   MFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCR-ETA 59

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
            K N + +RL G       ETN+++ +N +++K+M     +TAR       S    + T 
Sbjct: 60  EKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATM 118

Query: 607 FIVPNKHLFVRNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----K 650
               N +  +   D   WRR       + F              D  F  +         
Sbjct: 119 VAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQN 178

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
                  +F + ++   +  +            E  R+  DT   +I +      +    
Sbjct: 179 AFFSILVYFWEKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETV 238

Query: 711 S--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
                +  +Y+E+    +N  R       + L L Q+     +  + ++      RI+KG
Sbjct: 239 YNLSEVVTAYAEWYNTNINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKG 291

Query: 769 LKLKPAFESVDDNSNII 785
            ++   FE++    + I
Sbjct: 292 CRILHKFETLQPGESYI 308


>gi|227523364|ref|ZP_03953413.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227089470|gb|EEI24782.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 484

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 113/361 (31%), Gaps = 25/361 (6%)

Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
             R   +      +  A+ +    I              +   +GI +L   + +  + +
Sbjct: 88  IKRLIGMMYAPFNEREAEEVIYHLINWAKVKEPTVDRYLIPVANGIWNLHRHELIPFSPD 147

Query: 450 LYITKSTGTPF-----VEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRF 503
              T    T +                 ++       E++      +  +L G    ++ 
Sbjct: 148 YVFTTKIATKYVNNPVPPNINGWTVDGWLNEIANHDPEIVKLLWEIINDSLNGNFTRKKA 207

Query: 504 IHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
           I +    G +GK T   LI+   G   V + + +   +            L  L+G  + 
Sbjct: 208 IFLYSEKGNTGKGTFQQLIQNLVGKSNVGSLKVNQFDE---------RFKLALLVGKTVC 258

Query: 563 IISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
           I  +T  +  I +++    +  GD +T      + ++      T     N      N   
Sbjct: 259 IGDDTPPDIYIKDSSSFNSVVTGDLVTIEYKGQDGFTT-TLRCTVIQSCNGLPNFHNK-G 316

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
              RR I++PF+      + ++  + +     +  ++ L   +A        D+P V  +
Sbjct: 317 GTMRRMIIVPFNNHFEGSNDNWDIRDDYMSRQDVLQYVL--YRALQLDFKKFDVPTVSKQ 374

Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
           A  E  +  D    +  +     E     ++ + + Y +Y +       K +        
Sbjct: 375 ALSEFEKDNDPLIGF-REFFLSLEVDKIPTYYVYEYYKKYCQING---LKALGQNKFIRR 430

Query: 742 L 742
           L
Sbjct: 431 L 431


>gi|307149700|ref|YP_003891008.1| primase 2 [Cyanothece sp. PCC 7822]
 gi|306986766|gb|ADN18643.1| Primase 2 [Cyanothece sp. PCC 7822]
          Length = 1199

 Score =  163 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 74/542 (13%), Positives = 147/542 (27%), Gaps = 81/542 (14%)

Query: 19  KLIPLRLGDKRPQRLGKWEEQLLSSE-----------------KIDKLPACGFGFVCGVG 61
            L+PL   +K+P     W+ +  ++                  +I K+   GFG + G  
Sbjct: 23  ALVPLN-NNKQPLG-DGWQNRPYTATQLIEAITTGGVAVPIKGEIKKIQLQGFGVITGTS 80

Query: 62  ------EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
                    L A D+D                L  T      +  +    F + ++    
Sbjct: 81  LTREHETYTLMAVDLDGASATNKMLELSGSNPLPPTVAFTSTRPGRCQYLFLVPEKLKNL 140

Query: 116 KKTTESTQG---------HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
            +T +   G          +++       V       T  +Y W       ++ +  L  
Sbjct: 141 IRTKKIKTGVVGDDGKPEQIELRYSNLQSVLPPSVHPTTGQYHWVEGCAIDEI-EIALAP 199

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
           +  +E +F     I           +   T T N  +Q+++ +           F    +
Sbjct: 200 DWILEQMF-----IDKSSPSSPALNLSYTTHTYNRGKQWSDIDFAISYLNALSPFRADDY 254

Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
           D+W+ V MA+H               WS+  S Y   +   KW +F             T
Sbjct: 255 DDWVAVGMALHSVDDS---LLTEWDNWSRSSSKYKPGDCEKKWKSFSRGGGVQLG----T 307

Query: 287 FTSLFYHHGKLIPKG--LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344
              L    G   P+    LAS      +    ++                     N    
Sbjct: 308 LAHLAKLDGWTFPRKNTSLASPVKKPSSNQSIALTSTD-----------------NETTV 350

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
           +      + +    L+S+ + V  ++   +   K+ +               +   +   
Sbjct: 351 TGDTLSKSDTPNPQLLSVADTVTAVTAILKLGLKDYEEQNELDLLQSYSTFSKAAYQQLV 410

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
           +A            +D L+     +   +  LDL+          L          +  +
Sbjct: 411 SAIRCSEDVTQPSDTDRLNQ---LVNWHNATLDLKKII-----PPLAPVFIHDASVLNID 462

Query: 465 PSQEFLDLVSGYFESEEVM-DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
           P   +   +           D               A  +  + G  G+GK+    +I  
Sbjct: 463 PISLWQYFLPTVLSLAGKRLDLDIE------SHRIPAIAWTCLVGESGTGKTRAEGVILA 516

Query: 524 AF 525
             
Sbjct: 517 PL 518


>gi|331700427|ref|YP_004397386.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL
           B-30929]
 gi|329127770|gb|AEB72323.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL
           B-30929]
          Length = 484

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 113/361 (31%), Gaps = 25/361 (6%)

Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
             R   +      +  A+ +    I              +   +GI +L   + +  + +
Sbjct: 88  IKRLIGMMYAPFNEREAEEVIYHLINWAKVKEPTVDRYLIPVANGIWNLHRHELIPFSPD 147

Query: 450 LYITKSTGTPF-----VEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRF 503
              T    T +                 ++       E++      +  +L G    ++ 
Sbjct: 148 YVFTTKIATKYVNNPVPPNINGWTVDGWLNEIANHDPEIVKLLWEIINDSLNGNFTRKKA 207

Query: 504 IHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
           I +    G +GK T   LI+   G   V + + +   +            L  L+G  + 
Sbjct: 208 IFLYSEKGNTGKGTFQQLIQNLVGKSNVGSLKVNQFDE---------RFKLALLVGKTVC 258

Query: 563 IISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
           I  +T  +  I +++    +  GD +T      + ++      T     N      N   
Sbjct: 259 IGDDTPPDIYIKDSSSFNSVVTGDLVTIEYKGQDGFTT-TLRCTVIQSCNGLPNFHNK-G 316

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
              RR I++PF+      + ++  + +     +  ++ L   +A        D+P V  +
Sbjct: 317 GTMRRMIIVPFNNHFEGSNDNWDIRDDYMSRQDVLQYVL--YRALQLDFKKFDVPTVSKQ 374

Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
           A  E  +  D    +  +     E     ++ + + Y +Y +       K +        
Sbjct: 375 ALSEFEKDNDPLIGF-REFFLSLEVDKIPTYYVYEYYKKYCQING---LKALGQNKFIRR 430

Query: 742 L 742
           L
Sbjct: 431 L 431


>gi|218442267|ref|YP_002380595.1| primase [Cyanothece sp. PCC 7424]
 gi|218175408|gb|ACK74138.1| Primase 2 [Cyanothece sp. PCC 7424]
          Length = 1287

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 62/494 (12%), Positives = 141/494 (28%), Gaps = 67/494 (13%)

Query: 17  GFKLIPLRLGDKRPQRLGKWEEQLLSSE-----------------KIDKLPACGFGFVCG 59
           G  L  + L +K+      W+ +  ++                  +I K+   GFG + G
Sbjct: 37  GLDLALVPLNNKKQPLGDGWQNRPFTATQLIEAIHNGGVEVPIKGEIKKIQPQGFGVITG 96

Query: 60  ------VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
                  G   L A D+D              + L  T         +    F + ++  
Sbjct: 97  NSLTTQQGTYTLMAVDLDGASATDKMLELSRSKPLPPTVAFTSTLPGRCQYLFLVPEKFK 156

Query: 114 KKKKTTESTQG---------HLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTP 163
              +T +   G          +++       V     HP T + Y W       ++ +  
Sbjct: 157 NLIRTKKIKTGVVGDDGKPEQIELRYSNLQSVLPPSVHPDTGQ-YHWLEGCAIDEL-EIA 214

Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
           L  +  +E +     + +  L       + S    NN+N+Q+++ +           F  
Sbjct: 215 LAPDWILEQML---IDKSPLLPLSPPPRLSSTAQKNNSNKQWSDIDFAISYLNALSSFRA 271

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
             +D+W+ V MA+H               WS+  + Y   +   KW +F           
Sbjct: 272 DDYDDWLAVGMALHSVDDS---LLSEWDNWSRTSNKYKPGDCEKKWKSFSRGGGVK---- 324

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
                +L +             R +   +  + +         T+  K            
Sbjct: 325 ---LGTLAHMAKLDGWT--FPKRKNTPLSSPVKTPSSNQSVSLTSTDKK---------IT 370

Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
            +    K + +    L+S+ + V  ++   +   K+ +      +       + + +  +
Sbjct: 371 VTGDTSKRSDTSNPQLLSLADTVTAVTAILKLGLKDYEEQNEL-DLLQSYSTLSKTAYQQ 429

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
                  +     +     D  ++ +   +  LD +          L          +  
Sbjct: 430 LVRTIRCSLDEIQLGDT--DKFNQLVNWHNATLDFKKVL-----PPLAPAFIHDASVLNI 482

Query: 464 EPSQEFLDLVSGYF 477
           +P   +   +    
Sbjct: 483 DPISLWQYFLPTVL 496


>gi|319936296|ref|ZP_08010714.1| hypothetical protein HMPREF9488_01547 [Coprobacillus sp. 29_1]
 gi|319808672|gb|EFW05216.1| hypothetical protein HMPREF9488_01547 [Coprobacillus sp. 29_1]
          Length = 487

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 56/416 (13%), Positives = 127/416 (30%), Gaps = 36/416 (8%)

Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD----------LSEEPEDNNK 378
           + K       +    W   + K  +   +  + ++E +            +        +
Sbjct: 40  EVKRKLLSMDHLDKTWIDLVIKQISKAPSEYMIIEEMIRKYKIMFVDGLGIYIYSGKVWE 99

Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438
                        +    +  S+A S  + L+A     +  +LL         Q+  L+L
Sbjct: 100 KKSDNYMLKVIGKQMGKWKIGSRASSVLKQLKADCYEEVQFNLLP----VFNFQNCTLEL 155

Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGG 497
            TG+  + + +   +      +       ++   V    +  EE  +      G  L+  
Sbjct: 156 PTGRTHEHSADDLCSIMMEYDYNPQATYSDWHQFVMDICDDNEERYERLQMMCGYVLMND 215

Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
              Q+   + G G +GKS  +N+I+  F    V   +          +       LI+L 
Sbjct: 216 CHLQKSFMLYGEGANGKSVFLNIIEQVFNKNNVSYLQL---------DGLGDKFQLIQLT 266

Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
            + + I +ET  +     A  K++  G+ ++A     + + +           N+  + +
Sbjct: 267 DTLLNISTETKASTNGGEANFKKVVVGETVSACYKNKD-FYKFKPRAKLIFALNEIPYSK 325

Query: 618 NPDDAWWRRYIVIPFDKPIANRDA--------SFAQKLETKYTLEAKKWFLKGVKAYISK 669
             +  + RR   + F     +              +K   K       W  +G K     
Sbjct: 326 EINYGFVRRLSYVKFVNQYVDEPKGEHQKKVNRNLEKRLIKNLSGIFNWCYEGYKKLCVL 385

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
               DI +   + K+     +    ++  D      N    +  +   Y  + +  
Sbjct: 386 DRFPDIQDDH-EMKDLFYDISSPIYSFFKDM--KPLNERTLTRDIYSIYITWCKDN 438


>gi|329117177|ref|ZP_08245894.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Streptococcus parauberis NCFD 2020]
 gi|326907582|gb|EGE54496.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Streptococcus parauberis NCFD 2020]
          Length = 480

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 89/284 (31%), Gaps = 20/284 (7%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY- 476
               ++  ++G+ +++         +  IT    TPF             +F        
Sbjct: 118 QEYYYIPVKNGVYNIKNQHLEPFDPKFIITSKITTPFNPEAKKPILGGWFDFDKWFESLA 177

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
               EV+    + +  A+      ++ + + G G +GK T   L++   G + + N +  
Sbjct: 178 CNDSEVVTLLWQIMNEAINPNRTRKKMVILTGDGNNGKGTFQALLENLIGKENISNLKPD 237

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
              +     +         L G    I  + +       + +  +  GD +        T
Sbjct: 238 HFTKEFYTSS---------LEGKTCNIGDDISNKYLDEVSDLMSIVSGDRIQVNRKGKET 288

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           + E+          N     RN  + W+RR  ++PF+            K +        
Sbjct: 289 F-EATYRLLCIFSGNDIPRARNKTNGWYRRLCIVPFNADFNGNKERPEIKDKFIKNKTLL 347

Query: 657 KWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDD 699
           +W L   K    K       P+   K   E ++  D    ++ +
Sbjct: 348 EWIL--FKILTMKDFDKFIEPKAVTKMLNEYKRDNDYILTYVTE 389


>gi|160944666|ref|ZP_02091893.1| hypothetical protein FAEPRAM212_02180 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443850|gb|EDP20854.1| hypothetical protein FAEPRAM212_02180 [Faecalibacterium prausnitzii
           M21/2]
          Length = 437

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/393 (13%), Positives = 120/393 (30%), Gaps = 27/393 (6%)

Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
              +   +  +             + +   Q+++     +  S+  +  +  +  ++G  
Sbjct: 47  EDEAPLKKEIYEQVRYYATTSVARRIEHIVQAIK----LACASEPPEIQTDRIHVRNGTY 102

Query: 437 DLETGQKVKPTKEL-YITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMAL 494
            ++       T E  Y        +V   P+   +L  ++     EE +      +G  L
Sbjct: 103 FVDGH----FTPEKEYCMNRLPISYVPEAPAPTRWLQFLNELL-YEEDIPALQEYIGYCL 157

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
           L   KAQ+ + + G GG GKS +  +++  FGN          +      +      +  
Sbjct: 158 LPVTKAQKMLLMVGKGGEGKSRIGLILRELFGNS---------MYTGSLQKVETNRFARA 208

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIVPNKH 613
            L    +++  +           IK +    D +        +   +             
Sbjct: 209 GLEYKLLLVDDDMKTEALPQTNNIKTLVTLEDKIDIERKGQQSVQGTLYVRFACFGNGSL 268

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
             + +  + ++RR +++   +    R D  F              W L+G+   I     
Sbjct: 269 HALYDKSNGFYRRQLLLTTKEKPLGRVDDPFLIDKMRNEKEGILLWALEGLHRLIQNNYQ 328

Query: 673 VDIPEVCLKAKEEERQGTDTYQAWI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730
             I E      +E  +  +    ++  +   +I +    +S    K Y  +    L    
Sbjct: 329 FTISERTAANLKEAMEQGNNILGFLKSEGYFEIRKGAKCKSTDFYKVYERWCLDNLE--- 385

Query: 731 KRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
           K ++  T   +LK      GI  +         
Sbjct: 386 KPLAASTFIHHLKDNQKSLGIVYDDKCIGTNRG 418


>gi|139474571|ref|YP_001129287.1| phage replication protein [Streptococcus pyogenes str. Manfredo]
 gi|134272818|emb|CAM31096.1| putative phage replication protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 500

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 94/286 (32%), Gaps = 19/286 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  Q+GI+DL T + +  + +  IT    T +   +          F D ++      
Sbjct: 141 YLIPVQNGIIDLRTKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 200

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+   +   +F    G G +GK T    +    G   V   + +   
Sbjct: 201 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNVSALKPAQFA 260

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           +           +L  L+G    I  E       N + +  +T GD +      G    E
Sbjct: 261 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 310

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
           +          N      N    W+RR +++PF+            K +     E  ++ 
Sbjct: 311 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNDFLANKEVLEYA 370

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704
           L               P+      EE ++  D   +W+  +  + G
Sbjct: 371 LYKAIN-QKPFTHFIEPQAVKGLLEEYQEDNDYLLSWVKHEYMERG 415


>gi|117926195|ref|YP_866812.1| hypothetical protein Mmc1_2915 [Magnetococcus sp. MC-1]
 gi|117609951|gb|ABK45406.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
          Length = 765

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/298 (21%), Positives = 107/298 (35%), Gaps = 36/298 (12%)

Query: 10  AKQAIHNGFKLIPLRLGDKRP--QRLGKWE------------EQLLSSEKIDKLPACGFG 55
            ++ +  GF+++P+  G K P     GKW                L  +   + P  G G
Sbjct: 10  GEKLVAAGFQILPIAPGKKYPGSYHQGKWSPYKGWNKHAERATTALELQVWKQWPGAGIG 69

Query: 56  FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP-IVRIGQKPKILIPFRMNKEGIK 114
              G     +   DID  DE  +   +     L G    VRIG+ PK L+ +R +     
Sbjct: 70  VPGGQ----VAGIDIDVADESVSLQLEQLAMRLFGETKAVRIGRAPKRLLVYRTDTPFKG 125

Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP-PHRFKVEDTPLLSEEDVEYL 173
            K      +  L++L  GQ FVAY IHP T   Y W        K+ED P+++E+   + 
Sbjct: 126 IK------KHPLEVLCLGQQFVAYAIHPDTGHPYQWINQELTDLKIEDLPVITEQQAHHF 179

Query: 174 FKFFQEITVPLVKDKKS-------IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
            +    +    ++  +           S   T  ++ Q    E  A    F     +  +
Sbjct: 180 IEQGLALLPVEMRPARLEARGDSCNSYSAISTVISHSQAGTYEAVADAMRF-ISNADLPY 238

Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284
           D+W+ + MA+      + +       WS   +    +     W  F    IG      
Sbjct: 239 DDWMRIGMAIKGALGDAGEVL--FAEWSASSAKNIAQETFKAWSGFKPTIIGAGTIYH 294


>gi|294783579|ref|ZP_06748903.1| DNA primase-phage associated [Fusobacterium sp. 1_1_41FAA]
 gi|294480457|gb|EFG28234.1| DNA primase-phage associated [Fusobacterium sp. 1_1_41FAA]
          Length = 639

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/503 (13%), Positives = 161/503 (32%), Gaps = 40/503 (7%)

Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
           +    F+ +     K +    +    +   NK   +         T  +    + + N  
Sbjct: 155 RNSEIFSHIKILKDKKVSDTDIGRIVNFINNKVFKTPLPIDELKATIGSAMTGESNNNGK 214

Query: 342 Y----IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN----TDYRR 393
                I      K+  + +   +  K D+ +          + +  +   N        R
Sbjct: 215 PSFYTIDEKGKQKLNLTAIEMYMREKLDIREYRNILFYIKDDKRYEKDTLNGTNIFREIR 274

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSD-LLDSSSRF-LGEQDGILDLETGQKVKPTKELY 451
           + +E+ +   +T Q  E   +         D + ++ +  ++G   L   Q +K  ++++
Sbjct: 275 KTLEKENIVLNTKQDSEILHLIKTDFRIEEDKNKKYPIAFRNG-WCLYRDQFIK-QEKIF 332

Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIR-GV 509
                   +      +  ++ +  + + +E ++  F   +G  L+             G 
Sbjct: 333 TPFYMDVDYDPSANDENVINFIKWFCKDDEGLITLFEEILGHILMLERFPHHIFFFVAGK 392

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GKST++N++   + +            +               L+G  + +  + ++
Sbjct: 393 GKNGKSTMLNMLNN-WTDGLNSTTALDQFEKETYA---------YDLIGKIVNLGDDIDD 442

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
                +  IK + GG  + AR  Y     +  ++ T     N     ++      RR + 
Sbjct: 443 TYIEKSRVIKVIAGGSKIKARALYTMP-VDFKSTATLIFSCNNMPTFKDKSGGMARRVVC 501

Query: 630 IPFDKPIA--NRDASFAQKLETK-YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
            P +  +     D     KL T           +KG+K  I+ G ++ I E      E  
Sbjct: 502 FPCNSNVEYGKIDLDLDDKLTTDSAKSTLLNLAIKGMKRIIANGGELTITETSKALTERY 561

Query: 687 RQGTDTYQAWIDD------CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
               D+   +  +      C D+  N + +   L   Y  + ++            T++ 
Sbjct: 562 LIENDSIAMFFSETDVNKLCDDMENNTFTK---LYSLYQMFCDENG---YTPSGKNTLSK 615

Query: 741 NLKQKGFIGGIKREKIEKEWKSK 763
            L + GF        + K    K
Sbjct: 616 KLDEFGFESYTGAGNVRKIRPKK 638


>gi|299883481|ref|YP_003739032.1| hypothetical protein HacjB3_19528 [Halalkalicoccus jeotgali B3]
 gi|299126907|gb|ADJ17241.1| hypothetical protein HacjB3_19528 [Halalkalicoccus jeotgali B3]
          Length = 596

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/531 (14%), Positives = 187/531 (35%), Gaps = 32/531 (6%)

Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
                 ++ +R   +  +++     + +  D+        TF          +  T  S 
Sbjct: 17  ESGNLTYNNSRFKGEPVDLSEDSEGEENDDDDGTM-----TFATNTEDIDDNESETEKSD 71

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK---KDKNNVYIWSLT 347
                + + +     +   ++                 D+ +W +     +N+ +  +  
Sbjct: 72  EKLFQRRLERKERIDKQKKSHRTENKPHDSHDKTSLEPDSDSWSEILAMYENDDFGDTKK 131

Query: 348 LDKITASIMNFLVSMK-----EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
            D   A  +     +K     E+VF   +E E   K +   +     + R + + +N   
Sbjct: 132 ADYRAAEKLVEEYHIKTLESSEEVFW-YDESEGTYKENGGKKVDKVLNDRLKWLCDNRTK 190

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL---ETGQKVKPTKELYITKSTGTP 459
                 L++ S   +   + +    F+  ++G+L+L   +  +    + E    K+  TP
Sbjct: 191 GEVKSRLQSMSWV-MEDTVFNPPEGFICVKNGVLNLTDPDNPELEDHSPEYGFRKNMDTP 249

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
           ++EG  +Q F+D +    + +++ +      G+AL    +  +   + G   +GK T ++
Sbjct: 250 YIEGAENQLFVDSLEETVQDKDL-EKLQEYTGIALEDWEQPTKMAVLIGPQNAGKGTYLH 308

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
            I+  FG   V      ++  +R             L    + I +E +     +   +K
Sbjct: 309 AIESIFGKGNVAAEPIKELADSRWSTNS--------LKDRPLNIANELSTEKVNHQEAVK 360

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
            +TGG       + G++  E   +       N+   +   D  ++ R++ + F + +   
Sbjct: 361 TLTGGGDSKRAEDKGDSVYEFIPTSNHLFATNQLPEMPGADGIFYNRFLFVDFPQTVPKE 420

Query: 640 DAS--FAQKLETKY--TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK-EEERQGTDTYQ 694
           D      +K+            W ++G     S+G      E+    K  +      + +
Sbjct: 421 DRDASLDEKMVESEQRRAGILNWLIEGYARIKSRGKTGYTNELSEADKISKWHSYGSSIE 480

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            +I+ C +  E + +++ +    Y  Y     + +    +  T+T  LK+ 
Sbjct: 481 RFIETCIETDEAVEDDARTKKDLYQTYLRMSKDANLPCKAQATLTGKLKKL 531


>gi|146319168|ref|YP_001198880.1| virulence-associated protein E [Streptococcus suis 05ZYH33]
 gi|146321372|ref|YP_001201083.1| virulence-associated protein E [Streptococcus suis 98HAH33]
 gi|253752213|ref|YP_003025354.1| phage primase [Streptococcus suis SC84]
 gi|253754039|ref|YP_003027180.1| phage primase [Streptococcus suis P1/7]
 gi|253755973|ref|YP_003029113.1| phage primase [Streptococcus suis BM407]
 gi|145689974|gb|ABP90480.1| Virulence-associated protein E [Streptococcus suis 05ZYH33]
 gi|145692178|gb|ABP92683.1| Virulence-associated protein E [Streptococcus suis 98HAH33]
 gi|251816502|emb|CAZ52138.1| putative phage primase [Streptococcus suis SC84]
 gi|251818437|emb|CAZ56266.1| putative phage primase [Streptococcus suis BM407]
 gi|251820285|emb|CAR46774.1| putative phage primase [Streptococcus suis P1/7]
 gi|292558805|gb|ADE31806.1| Virulence-associated protein E [Streptococcus suis GZ1]
 gi|319758602|gb|ADV70544.1| virulence-associated protein E [Streptococcus suis JS14]
          Length = 510

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 114/323 (35%), Gaps = 26/323 (8%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGYF 477
           +++   +   +GI + +T      T     T    T +     S      EF   +   F
Sbjct: 144 ENAPHLIIVGNGIYNRKTRTLEPFTDTRVFTHKIQTNYNPHAQSPTIKGWEFNGWLLDLF 203

Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
              +E+     + +   + G     +     G GG+GK TL  L     G Q + + + +
Sbjct: 204 NGDKELYQLSLQLLNAVVRGE-SYAKMFWFVGEGGTGKGTLQELFINLIGRQNIASIKIT 262

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGN 595
           D+  N          +L + +G + +I  +      I + +K+  + GGD +T      +
Sbjct: 263 DLDVNN-------RFTLAQAIGKQAIIGDDVQAGAVIRDTSKLFSLVGGDTVTVEKKGKD 315

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
            YS    +       N    +R    A  RR +++PF+K    +  + A K +       
Sbjct: 316 AYSTFIKTV-VIQSTNTLPKIRGDYHAIRRRMVILPFNKHFKGK-PNRAIKNDYITRPSV 373

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-----CCDIGENLWEE 710
            ++ LK V     K  D   P   +   +E ++  D   A+  +           N W  
Sbjct: 374 LEYVLKTVIDLDFK--DFIEPSKSIDLLDEYQETIDPVLAFSQNLFTNLHSTFIPNDWVW 431

Query: 711 SHSLAKSYSEYREQELNYDRKRI 733
                  +++Y   + N+  +  
Sbjct: 432 W--YFTGFADYHNFQHNFSSQGF 452


>gi|325696225|gb|EGD38116.1| P4 family prophage Sa05 [Streptococcus sanguinis SK160]
          Length = 479

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 109/344 (31%), Gaps = 23/344 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  Q+GI++LET + +  + +  IT    T +              F D ++      
Sbjct: 121 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPTQVPRDREGKTFDDWLNSIACND 180

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+   +   +F    G G +GK T    +    G   +   + +   
Sbjct: 181 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 240

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           +           +L  L+G    I  E       N + +  +T GD +      G    E
Sbjct: 241 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 290

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDASFAQKLETKYTLEAKKW 658
           +          N      N    W+RR +++PF+      ++  + +           ++
Sbjct: 291 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANKD-VLEY 349

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG--ENLWEESHSLA 715
            L               P+      EE ++  D   +W+  +  + G  E        L 
Sbjct: 350 ALYKAIN-QEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKGWHELDVVPVFILT 408

Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
           +S   Y E               T+   Q+      K ++   +
Sbjct: 409 RSLKHYAEDMGIPKPNVYGAGKETIRHLQQLTPNHYKLKRARVK 452


>gi|312113986|ref|YP_004011582.1| Primase 2 [Rhodomicrobium vannielii ATCC 17100]
 gi|311219115|gb|ADP70483.1| Primase 2 [Rhodomicrobium vannielii ATCC 17100]
          Length = 782

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 117/352 (33%), Gaps = 62/352 (17%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKIDKLPAC--GFGFVCGVGEQ- 63
           E+ K  +  GF +  LR   K P     W E    + +++ KL       G   G   + 
Sbjct: 3   EEVKPLVEAGFSVHLLRPKSKIPAN-DGWSEAPVYTFDQLRKLYRDGQNVGIRLGKPSKV 61

Query: 64  ---PLYAFDIDSKDEKTANTFKDTFEILHG------TPIVRIGQKPKILIPFRMNKEGIK 114
               L+A D+D +  +  +   D  + L         P V+ G        + + ++  +
Sbjct: 62  EGLYLHAIDLDIRVPEAKSEALDRLDELISDGDLKELPCVQSGSGGASRHFYFLTEDAFR 121

Query: 115 KKK------------TTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVED 161
            KK              E  +  +++ G G+  V     HP T K Y W   P   +   
Sbjct: 122 SKKLAHSKHKFTGDDGKEHWEWEIELFGTGKQVVLPPSIHPDTGKAYRWVLQPDLKRG-- 179

Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
            P +S + ++ L                    +  + N+     T  E   +L    +  
Sbjct: 180 IPRISADLIDELVG--------------GDESTGFYENSEPLNLTINEARDYLDAIPD-- 223

Query: 222 YNGSHDEWIPVVMAVHHETRGS----SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE- 276
           +    D W+ V MA+ HE         +  E+   WS++G  Y+      +W  F F+  
Sbjct: 224 WADDRDSWVRVGMALKHEFADDKALIKEAWELFDEWSRRGYGYNRAKNLAQWRGFTFDRE 283

Query: 277 -------IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
                  I   A  R+ + ++     +   +            K + S++  
Sbjct: 284 ELVTMRSIVAEANDRALYETIEELDDEDEERPPAPPS-----AKVLMSMFDD 330


>gi|237739825|ref|ZP_04570306.1| DNA primase [Fusobacterium sp. 2_1_31]
 gi|229423433|gb|EEO38480.1| DNA primase [Fusobacterium sp. 2_1_31]
          Length = 685

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/436 (13%), Positives = 141/436 (32%), Gaps = 36/436 (8%)

Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR--RQNVEENSKAKSTAQSLE 410
              +N     ++ + D S    DN   S + +++   +     + +    K  +  +  E
Sbjct: 263 KLKVNTYKMAQKLINDFSIINIDNFLYSYNGQYYKKCEKEDIERAILRLHKDITMNELKE 322

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS---- 466
                 + +D       ++   +G+ +L+T +    +K+          + +        
Sbjct: 323 VLKKIQLGADKKKEDLNYIALNNGVFNLDTRKLEPYSKDKITMVHMDIIYTDDVDIITGE 382

Query: 467 ---QEFLDLVSGYFESE-EVMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMNLI 521
                  + +    +++  +       +G AL    N  Q+ + I+G   +GKS  + ++
Sbjct: 383 PTGTIIKNYMLDLVQNDYNLFCVLCEFLGQALYRKENILQKCLIIKGDKSNGKSKFLEIL 442

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
              FG + V   +     Q            L  ++G  + I  + +     +++ IK++
Sbjct: 443 IKFFGTENVSTLDLKRFEQ---------RFDLFSIVGKMVNIGDDISGQYIPDSSNIKKI 493

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639
              + +       + + +           N      +   A  RR  ++PF+        
Sbjct: 494 ITSEMLPIERKGQDLF-DYKPRIICIFSCNNLPRFDDSTKAVKRRLCILPFENTYRPELN 552

Query: 640 --DASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
             +     ++ T     E   W + G+   +     +      ++  EE  +  D  +A+
Sbjct: 553 NINPFIVHEMTTPENLSELFSWSVWGLDRVLRN-HRLTESPKIMELVEEFDKDNDPIRAF 611

Query: 697 IDDC---CDIGENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
           I+D     +IG   +        +   Y  +         K ++       LKQ      
Sbjct: 612 IEDMAGDTEIGLKGYFNMKDTGIIYTDYQIWCNNNG---YKEMNASNFGKQLKQHIPKLD 668

Query: 751 IKREKIEKEWKSKRII 766
            K  + + +    R +
Sbjct: 669 KKPYRNDFQKVKNRYL 684


>gi|19552943|ref|NP_600945.1| ATPase [Corynebacterium glutamicum ATCC 13032]
 gi|62390620|ref|YP_226022.1| prophage DNA primase [Corynebacterium glutamicum ATCC 13032]
 gi|41325958|emb|CAF20121.1| PROPHAGE DNA PRIMASE [Corynebacterium glutamicum ATCC 13032]
          Length = 591

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 113/333 (33%), Gaps = 27/333 (8%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----------LDL 472
                +  ++GI +  T Q    ++E      +   +     +                 
Sbjct: 188 KQRDLIPVKNGIFNYSTKQLEPFSQEFVFLAKSAVNYNPNAQNPVITHPQDGSVWDVESW 247

Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVI 531
           ++   +  EV++     +G  +       +        G +GK TL+ L++   G +   
Sbjct: 248 MNDLSDDPEVVNLLWEIIGAIVRPYVSWNKSAWFYSEAGNNGKGTLVELMRNILGAEAYT 307

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTAR 590
           + + SD  +            L  L  ++ +++ E +    +  +A +K +   D ++  
Sbjct: 308 SIQLSDFSKE---------FHLESLTRAQAILVDENDVGAFLEKSANLKAIVTNDVISIN 358

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
             +  T              N    V++  ++++RR + +PF+K     +  + +     
Sbjct: 359 RKHK-TMLSYQFYGFMVQCINGFPKVKDQSESFFRRQLFVPFEKSFTGAERKYIKDDYMS 417

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
              +  ++ L   +       ++  P   L   +E ++  D  +A+ ++  D        
Sbjct: 418 -RTDVLEYVL--HRVLHMNYDNLSTPAAALAVLDEYKEFVDPVRAFWNEFSDQFVWDLLP 474

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
              L + Y ++ +++       +  R+    + 
Sbjct: 475 LQFLYEFYRKWFDRDSPSGS-VLGKRSFIQKIT 506


>gi|268610888|ref|ZP_06144615.1| primase, putative [Ruminococcus flavefaciens FD-1]
          Length = 447

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/454 (14%), Positives = 135/454 (29%), Gaps = 30/454 (6%)

Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
             + K  + ++     +   ++D+I              V D   + +            
Sbjct: 3   DKEKKKEFLENAPKWVMGINSIDEIAYGTEYLKQFPMLCVNDKLFDVDGEVDMKYVSYRI 62

Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
                       +++ KS  ++++        +  L      +  Q+G LD++       
Sbjct: 63  SQDILPYVRNNLSNRVKSLIEAIKLLCY----NSELPLDEFRIHLQNGTLDVDGTFTE-- 116

Query: 447 TKELYITKSTGTPF----VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR 502
            K+ +        +     E    ++FL  +    E  E ++     +G  L+   + Q+
Sbjct: 117 -KKYFCRNRLNVEYKEFIGEAYYPEKFLTFLYDLLE-PEDVETLQEYLGYCLIPSTRGQK 174

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
            + I G GG GKS +  +++  FG          +++                L    ++
Sbjct: 175 MMFIVGNGGEGKSRIGVVLQSIFGK---------NMLTGSFQRIENDRFFRYNLQDKLLM 225

Query: 563 IISETNENDEINAAKIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
           +  +   N  ++   IK +   +  +        +Y     S            + +  D
Sbjct: 226 VDDDMQMNALMSTGYIKNLITAETPVDVEAKGEQSYQAKLYSRFLCFGNGSPKALYDKTD 285

Query: 622 AWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
            + RR I++       NR D  F          +  +W   G+K  I +     I     
Sbjct: 286 GFARRLIILTTKPKSENRIDDPFIADKFIAEKEKIFRWMYDGLKRLIDRKFRFTISNKTK 345

Query: 681 KAKEEERQGTDTYQAWIDDC--CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
               E          ++ DC       +       L  SYS +     +     +   T 
Sbjct: 346 LNISEALSDNCNINEFLSDCDIVSFNTDFRVTGAELYSSYSVWC---GDNALTALKRDTF 402

Query: 739 TLNLK--QKGFIGGIKREKIEKEWKSKRIIKGLK 770
              LK  QK          ++      R  KG+K
Sbjct: 403 ISWLKTNQKKLGICYDSNILDDRGNRVRGFKGIK 436


>gi|326381741|ref|ZP_08203435.1| P4 family phage/plasmid primase [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199988|gb|EGD57168.1| P4 family phage/plasmid primase [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 706

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 103/361 (28%), Gaps = 57/361 (15%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-------------- 469
           +    +  ++GI+D  T   V  + E       G  +     S                 
Sbjct: 226 TDPDLIATRNGIVDFRTKTSVPFSPEYVFLAKLGVDWNPDAVSPVIPNPKHCLHDDRISC 285

Query: 470 -------------------------LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
                                       ++   +  EV       V   +       + +
Sbjct: 286 TSLCTCSGDHDDPADCTSSCQTWDVESWMADLIDDPEVTTLLWEIVSAVIRPYISWNKAV 345

Query: 505 HIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
                 G +GK TL+ +I+   G     +   +D               L  L+G+  ++
Sbjct: 346 FFYSQQGNNGKGTLLAMIRNLLGRGNYASLPLADF---------GHEFKLEDLVGTSAIL 396

Query: 564 ISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
             E +    I+ AA  K +   D +           +           N    V++  ++
Sbjct: 397 TDENDVGTYIDKAANFKAIVTNDVIMINRKNRRA-IKHQHYGLMIQCFNDKPTVKDKSES 455

Query: 623 WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
             RR + I FDK    R+  + +           ++ L  ++A      ++  P     A
Sbjct: 456 LLRRLMFIHFDKSFTGRERKYIKDDYLHRRD-VLEYVL--LRALSMGHYELSEPAAVKAA 512

Query: 683 KEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
            +E ++  D   A+  +    I   L   +  L   Y  +  + +  + K +        
Sbjct: 513 LDEFKEYNDPVLAFWREIRTQITWRL-APAQFLFDMYKSWMVRNM-PNSKALGRYKFYDQ 570

Query: 742 L 742
           L
Sbjct: 571 L 571


>gi|62860541|gb|AAY16511.1| putative primase [Gordonia terrae phage GTE5]
          Length = 225

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 4/222 (1%)

Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
           P +I     R+V  SE  + + +++  IK++TGGD +TAR  Y N   +    FTP I  
Sbjct: 2   PEIIAAFPRRVVFASEVGQRNRLHSDVIKRLTGGDSVTARALYSNVMVQRTPMFTPIIAT 61

Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL-EAKKWFLKGVKAYISK 669
           N    + + D A WRR +V+PFD+ +   +A      E    L     W + G+  Y+ +
Sbjct: 62  NSMPTIEDGDAALWRRLLVLPFDRQVPLSNADVTPIREVPEALRAVLSWLVDGLLDYLLE 121

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           GLD  +P    K +     GT T+Q +  +     ++    +  + + Y ++ ++E   +
Sbjct: 122 GLDTALPTEVTKRRAMFIAGTSTFQMFTAEMLTDDDDGKVVALKVFELYRQWAKRE---E 178

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
              ++ R     +++ G+       +   +  S+ I  G +L
Sbjct: 179 ADPLTRREFYSRMRENGYATKKATVRRAGKVTSETIFTGFRL 220


>gi|227903638|ref|ZP_04021443.1| DNA primase [Lactobacillus acidophilus ATCC 4796]
 gi|227868525|gb|EEJ75946.1| DNA primase [Lactobacillus acidophilus ATCC 4796]
          Length = 498

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 55/408 (13%), Positives = 137/408 (33%), Gaps = 27/408 (6%)

Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL--DSSSRFLGEQDGIL 436
           N++S  +  ++    + +       +     E  S   I S  L   +        +GI 
Sbjct: 88  NTESGIYEKDSLLIEELINTVEPQITERNIKEVKSKLRIESKRLFLTNDPNLYALGNGIF 147

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-------MDYFTRC 489
           D +  + +  + +   T      +        F +     + +E++       +    + 
Sbjct: 148 DAKKHKLLAYSPKCVFTSKIAVNYNPNAQEPRFDNWSFSKWINEDIAENKTDKIKLIWQT 207

Query: 490 VGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
           +   +         + +     G +GK T   L++   G       + +   +       
Sbjct: 208 IKAVVNSNYSYHSAVFLIDSKKGSAGKGTFEALLENIAGPNNYATIKLNQFEKA------ 261

Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTP 606
              P L  ++   +VI  + + N  +++++  K  + GD +     +   YS    +   
Sbjct: 262 ---PILATIVNKPLVIGDDNDPNRAVDSSENFKSASTGDPIVINDKFEKAYS-YKPTCLI 317

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
               N     ++  DA +RR  VI F+K       +   K E     E  +W +K     
Sbjct: 318 VQSLNALPVFKDNTDATYRRIRVIKFNKKYIENAKNRRVKDEYISNKELLEWIVKKAIDV 377

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
              G  +   +   +  +E +  +D++  + +D      N +       ++Y ++ E   
Sbjct: 378 KIDG-VMIRTQESNEILKENQIDSDSFLQFTNDIIVPTTNGYRFKDDTYQAYKKWFEITG 436

Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
            +     + R     +++     G+K+ +  +  +   +   ++LK  
Sbjct: 437 -HQFGLETYRGFNKRMRE---DIGLKQSRKMRNGRKMDVWLNIQLKTD 480


>gi|58337070|ref|YP_193655.1| DNA primase [Lactobacillus acidophilus NCFM]
 gi|58254387|gb|AAV42624.1| DNA primase [Lactobacillus acidophilus NCFM]
          Length = 500

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 55/408 (13%), Positives = 137/408 (33%), Gaps = 27/408 (6%)

Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL--DSSSRFLGEQDGIL 436
           N++S  +  ++    + +       +     E  S   I S  L   +        +GI 
Sbjct: 90  NTESGIYEKDSLLIEELINTVEPQITERNIKEVKSKLRIESKRLFLTNDPNLYALGNGIF 149

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-------MDYFTRC 489
           D +  + +  + +   T      +        F +     + +E++       +    + 
Sbjct: 150 DAKKHKLLAYSPKCVFTSKIAVNYNPNAQEPRFDNWSFSKWINEDIAENKTDKIKLIWQT 209

Query: 490 VGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
           +   +         + +     G +GK T   L++   G       + +   +       
Sbjct: 210 IKAVVNSNYSYHSAVFLIDSKKGSAGKGTFEALLENIAGPNNYATIKLNQFEKA------ 263

Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTP 606
              P L  ++   +VI  + + N  +++++  K  + GD +     +   YS    +   
Sbjct: 264 ---PILATIVNKPLVIGDDNDPNRAVDSSENFKSASTGDPIVINDKFEKAYS-YKPTCLI 319

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
               N     ++  DA +RR  VI F+K       +   K E     E  +W +K     
Sbjct: 320 VQSLNALPVFKDNTDATYRRIRVIKFNKKYIENAKNRRVKDEYISNKELLEWIVKKAIDV 379

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
              G  +   +   +  +E +  +D++  + +D      N +       ++Y ++ E   
Sbjct: 380 KIDG-VMIRTQESNEILKENQIDSDSFLQFTNDIIVPTTNGYRFKDDTYQAYKKWFEITG 438

Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
            +     + R     +++     G+K+ +  +  +   +   ++LK  
Sbjct: 439 -HQFGLETYRGFNKRMRE---DIGLKQSRKMRNGRKMDVWLNIQLKTD 482


>gi|223932863|ref|ZP_03624859.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591]
 gi|223898444|gb|EEF64809.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591]
          Length = 480

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 109/341 (31%), Gaps = 22/341 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  Q+GI+DL+T + +  + +  IT    T +              F + ++      
Sbjct: 121 NLIPVQNGIIDLKTKELLPFSPKYVITSKISTAYHAPTTVPTDREGNTFDNWLNSIACND 180

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+   +   +F    G G +GK T    +    G   +   + +   
Sbjct: 181 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 240

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           +           +L  L+G    I  E       N + +  +T GD +      G    E
Sbjct: 241 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 290

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
           +          N      N    W+RR +++PF+            K E     +  ++ 
Sbjct: 291 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANQKVLEYA 350

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEESHSLAK 716
           L               P+      EE ++  D   +W+ ++  + G  E        L +
Sbjct: 351 LYKAIN-QEPFTHFIEPQAAKGLLEEYQEDNDYLLSWVKNEYMEKGWHELEVVPVFILTR 409

Query: 717 SYSEYREQELNYDRKRISTRTVTLN-LKQKGFIGGIKREKI 756
           S   Y E               T+  L+Q        R+K 
Sbjct: 410 SLKHYAEDMGISKPNVYGAGKETIRHLQQLTPNRYSLRKKR 450


>gi|21324508|dbj|BAB99132.1| Predicted ATPase [Corynebacterium glutamicum ATCC 13032]
          Length = 550

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 113/333 (33%), Gaps = 27/333 (8%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----------LDL 472
                +  ++GI +  T Q    ++E      +   +     +                 
Sbjct: 147 KQRDLIPVKNGIFNYSTKQLEPFSQEFVFLAKSAVNYNPNAQNPVITHPQDGSVWDVESW 206

Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVI 531
           ++   +  EV++     +G  +       +        G +GK TL+ L++   G +   
Sbjct: 207 MNDLSDDPEVVNLLWEIIGAIVRPYVSWNKSAWFYSEAGNNGKGTLVELMRNILGAEAYT 266

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTAR 590
           + + SD  +            L  L  ++ +++ E +    +  +A +K +   D ++  
Sbjct: 267 SIQLSDFSKE---------FHLESLTRAQAILVDENDVGAFLEKSANLKAIVTNDVISIN 317

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
             +  T              N    V++  ++++RR + +PF+K     +  + +     
Sbjct: 318 RKHK-TMLSYQFYGFMVQCINGFPKVKDQSESFFRRQLFVPFEKSFTGAERKYIKDDYMS 376

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
              +  ++ L   +       ++  P   L   +E ++  D  +A+ ++  D        
Sbjct: 377 -RTDVLEYVL--HRVLHMNYDNLSTPAAALAVLDEYKEFVDPVRAFWNEFSDQFVWDLLP 433

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
              L + Y ++ +++       +  R+    + 
Sbjct: 434 LQFLYEFYRKWFDRDSPSGS-VLGKRSFIQKIT 465


>gi|169834274|ref|YP_001693718.1| prophage Sa05, P4 family DNA primase [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996776|gb|ACA37388.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 489

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 95/286 (33%), Gaps = 19/286 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  Q+GI++LET + +  + +  IT    T +   +          F D ++      
Sbjct: 130 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 189

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+   +   +F    G G +GK T    +    G   +   + +   
Sbjct: 190 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 249

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           +           +L  L+G    I  E       N + +  +T GD +      G    E
Sbjct: 250 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 299

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
           +          N      N    W+RR +++PF+            K E     E  ++ 
Sbjct: 300 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANKEVLEYA 359

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704
           L               P+      EE ++  D   +W+  +  + G
Sbjct: 360 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKG 404


>gi|299782824|gb|ADJ40822.1| DNA primase [Lactobacillus fermentum CECT 5716]
          Length = 522

 Score =  160 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/503 (13%), Positives = 158/503 (31%), Gaps = 47/503 (9%)

Query: 309 DAYNKAMFS---IYKKGHFLYTADTKAWYKKDKNN-VYIWSLTLDKITASIMNFLVSMKE 364
           D   K                       Y+K+    V+    T    T  +   +++ + 
Sbjct: 15  DEMVKRRHDAQPKSFDEQLELLTAWGRQYRKENTRTVHHQDGTESVTTKRMPARMIADRI 74

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD---L 421
           +      +  + ++  +S         R       ++ +    +LE        ++   L
Sbjct: 75  EAVASIAKLGETDRELESAPLVLYVPDRGIYTHSTARVRRMILALEPACTIKARNEVEWL 134

Query: 422 LD---------SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ----- 467
           LD         SS   +   +GI + ++G+    T E+  T    T +            
Sbjct: 135 LDGEATAKAPESSPSLIPVGNGIYNTDSGEFQPFTPEIVFTSKIATNYNPNATEPSFNGW 194

Query: 468 EFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKSTLMNLIKYA 524
           +F D V+      E       + +   +   + A  F      G G +GKSTL  L+   
Sbjct: 195 KFSDWVNELAQGDEAKRTLIWQMIASIVKNRDTANVFFAFVDNGQGRTGKSTLEQLLMNL 254

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTG 583
            G     + +  +            +  L    G+R++I  +      I+    +K +  
Sbjct: 255 VGKDNYTSLKLDEF---------GHDFKLANAYGARLIIGDDNEPKGFIDDGSNLKSIVT 305

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
            + +         +  +    T     N     R+     +RR+ ++ F K   +  A  
Sbjct: 306 NETVLLNPKGAKPF-TAKFFATVVQSMNGVPTFRDKSGGLYRRFRMLNFPKQYPDTPAGK 364

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
             K +  Y  +  +W LK         +     +   +   + R   D    ++++    
Sbjct: 365 RIKNDYIYDRQLLEWILKKALEVDVTTIIDT--KESQELVYDTRLDNDPVLYFVEEVVGQ 422

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN----LKQKGFIGGIKREKIEKE 759
            ++    ++ L   +  + + E +  +  +  R+ T      ++++G+    K     K 
Sbjct: 423 LKSTRVPTNFLFNLFCAFMKAENSPTK--LKQRSFTKQVRPYMERRGWKYDNKNLTASKY 480

Query: 760 WKSKRIIKGLKLKPAFESVDDNS 782
           +    +    +L   F+ +   +
Sbjct: 481 FNKADM----QLVHGFDDLVGTN 499


>gi|298229143|ref|ZP_06962824.1| prophage Sa05, DNA primase, P4 family protein [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298255093|ref|ZP_06978679.1| prophage Sa05, DNA primase, P4 family protein [Streptococcus
           pneumoniae str. Canada MDR_19A]
          Length = 495

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 95/286 (33%), Gaps = 19/286 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  Q+GI++LET + +  + +  IT    T +   +          F D ++      
Sbjct: 136 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 195

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+   +   +F    G G +GK T    +    G   +   + +   
Sbjct: 196 SELVTLFWQIILEAIDPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 255

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           +           +L  L+G    I  E       N + +  +T GD +      G    E
Sbjct: 256 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 305

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
           +          N      N    W+RR +++PF+            K E     E  ++ 
Sbjct: 306 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANKEVLEYA 365

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704
           L               P+      EE ++  D   +W+  +  + G
Sbjct: 366 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKG 410


>gi|148993596|ref|ZP_01823067.1| putative phage replication protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489324|ref|ZP_02713523.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
           SP195]
 gi|147927817|gb|EDK78839.1| putative phage replication protein [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572209|gb|EDT92737.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
           SP195]
 gi|332071695|gb|EGI82188.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Streptococcus pneumoniae GA17570]
          Length = 489

 Score =  160 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 94/286 (32%), Gaps = 19/286 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  ++GI+DL T + +  + +  IT    T +   +          F D ++      
Sbjct: 130 NLVPVKNGIIDLRTKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 189

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+   +   +F    G G +GK T    +    G   +   + +   
Sbjct: 190 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFG 249

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           +           +L  L+G    I  E       N + +  +T GD +      G    E
Sbjct: 250 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 299

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
           +          N      N    W+RR +++PF+            K E     E  ++ 
Sbjct: 300 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANKEVLEYA 359

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704
           L               P+      EE ++  D   +W+  +  + G
Sbjct: 360 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKG 404


>gi|254304008|ref|ZP_04971366.1| possible ATP-binding protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324200|gb|EDK89450.1| possible ATP-binding protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 639

 Score =  160 bits (405), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 143/431 (33%), Gaps = 36/431 (8%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN----TDYRRQNVEENSKAKST 405
           K+  + +   +  K D+ +          + +  +   N        R+ +E+ +   +T
Sbjct: 227 KLNLTAIEMYMRKKLDIREYRNILFYIKDDKRYEKDTLNGTNIFREIRKTLEKENIVLNT 286

Query: 406 AQSLEAGSIFSITSD-LLDSSSRF-LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
            Q  E   +         D + ++ +  ++G   L   Q +K  ++++        +   
Sbjct: 287 KQDSEILHLIKTDFRIEEDKNKKYPIAFRNG-WCLYRDQFLK-QEKIFTPFYMDVDYDPD 344

Query: 464 EPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIR-GVGGSGKSTLMNLI 521
              +  ++ +  +    E ++  F   +G  L+             G G +GKST++N++
Sbjct: 345 ANDENVINFIKWFCKGDEGLITLFEEILGHILMLERFPHHIFFFVAGKGKNGKSTMLNML 404

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
              + +            +               L+G  + +  + ++     +  IK +
Sbjct: 405 NN-WTDGLNSTTALDQFEKE---------TYTYDLIGKIVNLGDDIDDTYIEKSRVIKVI 454

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639
            GG  + AR  Y     +  ++ T     N     ++      RR +  P +  I     
Sbjct: 455 AGGSKIKARALYSMP-VDFKSTATLIFSCNNMPTFKDKSGGMARRVVCFPCNSNIEYGKI 513

Query: 640 DASFAQKL-ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
           D     KL             +KG+K  I+ G ++ I E      E      D+   + +
Sbjct: 514 DLDLDDKLCTDSAKSTLLNLGIKGMKRIIANGGELTITETSKAMTERYLIENDSIAMFFN 573

Query: 699 D------CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
           +      C D+  N + +   L   Y  + ++            T++  L + GF   + 
Sbjct: 574 ETDVNKLCDDMENNTFTK---LYTIYEIFCDENG---YTPSGKNTLSKKLDEFGFESYVG 627

Query: 753 REKIEKEWKSK 763
              + K    K
Sbjct: 628 AGNVRKIRPKK 638


>gi|225860228|ref|YP_002741737.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298502000|ref|YP_003723940.1| prophage Sa05, P4 family DNA primase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|225727584|gb|ACO23435.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237595|gb|ADI68726.1| prophage Sa05, P4 family DNA primase [Streptococcus pneumoniae
           TCH8431/19A]
 gi|327390605|gb|EGE88945.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Streptococcus pneumoniae GA04375]
          Length = 489

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 95/286 (33%), Gaps = 19/286 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  Q+GI++LET + +  + +  IT    T +   +          F D ++      
Sbjct: 130 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 189

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+   +   +F    G G +GK T    +    G   +   + +   
Sbjct: 190 SELVTLFWQIILEAIDPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 249

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           +           +L  L+G    I  E       N + +  +T GD +      G    E
Sbjct: 250 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 299

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
           +          N      N    W+RR +++PF+            K E     E  ++ 
Sbjct: 300 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANKEVLEYA 359

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704
           L               P+      EE ++  D   +W+  +  + G
Sbjct: 360 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKG 404


>gi|94995306|ref|YP_603404.1| DNA primase [Streptococcus phage 10750.4]
 gi|94548814|gb|ABF38860.1| DNA primase [Streptococcus phage 10750.4]
          Length = 498

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 100/299 (33%), Gaps = 22/299 (7%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY- 476
              R++   +G+ +++T Q    + +  IT    T +             +F   +S   
Sbjct: 137 EDYRYIPVANGVYNIQTKQLEPFSPKFIITSKIQTSYTSKARKPILGGWFDFDKWLSSLA 196

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
               EV++   + +  A+      ++ + + G G +GK T   L++   G   + N +  
Sbjct: 197 VNDGEVVELLWQVMNEAINPNRTRKKLVIMVGDGNNGKGTFQALLENLIGRANISNLKPD 256

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
              +            L  L G    I  + +       + +  +  GD +       +T
Sbjct: 257 QFGKE---------FYLSALDGKVCNIGDDISNKYLDEVSDLMSVASGDPVQVNRKGKDT 307

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           Y E+          N     RN    W+RR  +IPF+            K +     +  
Sbjct: 308 Y-EATYRLMCIFSGNDLPKARNKTTGWYRRLCLIPFNADFNGEVERPEIKDQFMKDKQLL 366

Query: 657 KWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
           +W L   K    +       P+   +  E  ++  D  + W+ +      N W E + +
Sbjct: 367 EWVL--FKILNMEDFDKFIEPKAVREVIESYKKDNDYIRLWVTEY--YIPNGWHEVNHV 421


>gi|325662741|ref|ZP_08151335.1| hypothetical protein HMPREF0490_02075 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470978|gb|EGC74206.1| hypothetical protein HMPREF0490_02075 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 434

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/443 (14%), Positives = 147/443 (33%), Gaps = 29/443 (6%)

Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
            K+ +  +     +D++            + +  +    +    + +  +  +       
Sbjct: 3   FKEYSQEWFEDGQIDEVAFCENFLQRMPLKCINGIFFSYDGMLPDGEVEKEIYRMVKPVL 62

Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
               + K K   + L+  +        +D     +  ++G   L  G   +   + +   
Sbjct: 63  TKGISKKVKQLLEVLKLEAYSEELPVQMDR----IHVKNGTYFLS-GSFTEM--KEFCLN 115

Query: 455 STGTPFV-EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
                +  +    + +L  +S   E ++ +      +G  L+  NKAQ+ + I G GG G
Sbjct: 116 RLPVNYEMKEAKPERWLKFLSELLEEDD-IPTLQEYMGYCLIPSNKAQKLLIILGKGGEG 174

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KS +  +++   G     N   S+I +           +   L    +++  +       
Sbjct: 175 KSRIGLVMRKILG----TNMNVSNIQK-----VEHNRFARADLEYRLLMVDDDMKLEALK 225

Query: 574 NAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
           +   IK +    D M        +   +               + +    ++RR I++  
Sbjct: 226 DTNYIKTIVTLEDKMDLERKSKQSVQGNLYVRFLCFGNGSLSALHDRSYGFYRRQIILTV 285

Query: 633 DKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
               A+R  D    +KL+     +   W L G+K  +       I E   K   E  +  
Sbjct: 286 KDVPADRVDDPYLIEKLQR-EADDIFLWCLHGLKRLLKNEYRFTISERAKKNLHEAMESG 344

Query: 691 DTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKG 746
           +   A++       + EN    S +L ++Y  + E       K +S ++ +  LK  +K 
Sbjct: 345 NNIIAFMQSAGYIRLEENTTATSKNLYQAYCRWCEDNTE---KPMSAKSFSGYLKENEKK 401

Query: 747 FIGGIKREKIEKEWKSKRIIKGL 769
           +             K+ R  +G+
Sbjct: 402 YHIHYSTNIPSDNGKNARGFQGI 424


>gi|222152411|ref|YP_002561586.1| phage replication protein [Streptococcus uberis 0140J]
 gi|222113222|emb|CAR40712.1| putative phage replication protein [Streptococcus uberis 0140J]
          Length = 479

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 92/284 (32%), Gaps = 21/284 (7%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY- 476
            +  ++  ++G+ ++ T +      +  IT    TPF             +F        
Sbjct: 118 QAYNYIPVKNGVYNILTQKLEPFDPKFIITSKIATPFNPDAKKPILNGWFDFDKWFDSLA 177

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
               EV+    + +  A+      ++ + + G G +GK T   L++   G + + N +  
Sbjct: 178 CNDSEVVTLLWQIMNEAINPNRTRKKMVILTGDGNNGKGTFQALLENLIGKENISNLKPD 237

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
              +               L G    I  + +       + +  +  GD +        T
Sbjct: 238 QFKE----------FYTNALEGKTCNIGDDISNKYLDEVSDLMSIVSGDRIQVNRKGKET 287

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           + E+          N     RN  + W+RR  ++PF+            K +        
Sbjct: 288 F-EATYRLLCIFSGNDIPRARNKTNGWYRRLCIVPFNADFNGNKERPEIKDKFIRNKSLL 346

Query: 657 KWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDD 699
           +W L   K    K       P+V  K  ++ ++  D    ++ +
Sbjct: 347 EWIL--FKILTMKDFDKFIEPKVVTKMLDQYKRDNDYILTFVTE 388


>gi|291336798|gb|ADD96333.1| primase 2 [uncultured organism MedDCM-OCT-S08-C700]
          Length = 364

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 90/305 (29%), Gaps = 48/305 (15%)

Query: 26  GDKRPQRLGKWEEQLLSSEKIDKLP----ACGFGFVCGVGEQPLYAFDIDSKDEKTANTF 81
            +KRP +   W+   L   ++ K      + G G  CG     L   D D      A   
Sbjct: 20  KNKRPYQND-WQNNPLKQSQLFKELVAKRSTGIGVCCGTPSGGLLFLDHDGPSA--AKIL 76

Query: 82  KDT---FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG---------HLDIL 129
            +       L  + +V  G+  +  I +++ ++   K KT +   G          +++ 
Sbjct: 77  GEWGFSLSSLPPSWMVTSGRVGRFQIIYKVPEKYWSKIKTRKYQTGVKDEDGSVEQIELR 136

Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189
             G   +    HP T   Y W        +          ++ + +  ++ T  +     
Sbjct: 137 WDGTQSIVSGSHPMTDG-YRWMDARSPRDLS-IAEAPLAIIKKMMELNKKKTPQIQTLNS 194

Query: 190 SIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI 249
               +++   + N    +                  +D W+ + MA H     S      
Sbjct: 195 DTDKARSLLQSINPSRLD-----------------DYDIWLKIGMAAHSVGDDS--LLSD 235

Query: 250 ARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
               S++ S Y       KW +F    +        +  +L     +        +  + 
Sbjct: 236 WENLSQKNSKYKSGECEKKWSSFKSSGV--------SLGTLQKFASEDGWTPPPRTFPTS 287

Query: 310 AYNKA 314
              K 
Sbjct: 288 IEPKE 292


>gi|307126159|ref|YP_003878190.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
           670-6B]
 gi|306483221|gb|ADM90090.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
           670-6B]
          Length = 492

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 94/286 (32%), Gaps = 19/286 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  Q+GI++LET +    + +  IT    T +   +          F D ++      
Sbjct: 133 NLIPVQNGIINLETKELFPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 192

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+   +   +F    G G +GK T    +    G   +   + +   
Sbjct: 193 SELVTLFWQIILEAINSNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 252

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           +           +L  L+G    I  E       N + +  +T GD +      G    E
Sbjct: 253 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 302

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
           +          N      N    W+RR +++PF+            K E     E  ++ 
Sbjct: 303 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANDEVLEYA 362

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704
           L               P+      EE ++  D   +W+  +  + G
Sbjct: 363 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEENDYLLSWVKHEYMERG 407


>gi|28379719|ref|NP_786611.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus
           plantarum WCFS1]
 gi|28272559|emb|CAD65486.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus
           plantarum WCFS1]
          Length = 500

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 21/280 (7%)

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-VSGYF-----E 478
               +   +GI +L   Q +  + +   T    T + +   +       +  +F      
Sbjct: 139 DRYLVPVNNGIWNLHQHQLIPFSPKYVFTTKIATNYRDNATTPNIKGWTIDNWFDELACG 198

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASD 537
            +E+++     +   L G    ++ I +    G SGK T   LI    G   V   + ++
Sbjct: 199 DDEIVELLWEVINDCLNGNYTRKKAIFLFSELGNSGKGTFQELITNLVGMDNVGTLKVNE 258

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNT 596
                          L  L+G  + I  +   +  I +++    +  GD +       + 
Sbjct: 259 FD---------VRFRLAGLVGKTVCIGDDIAPDIYIKDSSNFNSVVTGDLVNIEFKGQDG 309

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           Y+ +    T     N      N      RR +++PF+     +  +++ + +     +  
Sbjct: 310 YTSAL-RCTIVQSCNGLPNFHNK-GGTMRRLVIVPFNNHFQGKGDNWSIRNDYITRKDVL 367

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
           ++ L   KA         +PEV  KA  +     +    +
Sbjct: 368 EYVL--YKALQLDFDKFSVPEVSKKALADFELDNNPLIGF 405


>gi|153213459|ref|ZP_01948770.1| integrase [Vibrio cholerae 1587]
 gi|124115923|gb|EAY34743.1| integrase [Vibrio cholerae 1587]
          Length = 792

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 103/664 (15%), Positives = 200/664 (30%), Gaps = 95/664 (14%)

Query: 13  AIHNGFKLIPLRLGDKR-----PQRLG-KWEEQLLSSEKIDKLPA-------CGFGFVCG 59
            I  G+ ++PL           P  +G  + +   S   ++              G  CG
Sbjct: 35  YIEVGYYVLPLDPKKGEGKSLPPSSMGVSYAQAAKSRRAVESWFGLGGKFRGYNIGLACG 94

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTF---EILHGTPIVRIGQK--PKILIPFRM---NKE 111
                ++A D+D +D+K    F       +     P  +I +         F+     K 
Sbjct: 95  KN-GGIFAIDVDVEDKKGNKGFLALDMLEQEFGKLPETQIQRTASGGTHYIFQWTQGAKT 153

Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
              K      T+G  D   C  + VAY    +        T     +      +    +E
Sbjct: 154 SSGKIAKAIDTRGG-DEHSCRSHIVAYPSRVRNGGYEMVATTVAPAE------IPSWVLE 206

Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
            L K            K+S    +   ++   +YT R++   L     +     +DEW+ 
Sbjct: 207 ALAK------PDRSSKKQSRGSEEITDDDIENKYTPRQLWKMLDFINPDELE--YDEWLM 258

Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF 291
            + A+H +   + KG E+A RWS++GS Y+    + +W  FD            T     
Sbjct: 259 CLQAIHSQYPDA-KGFELADRWSQRGSRYEPNEVSIRWGAFDDSGEVRVG----TLIYFA 313

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
              G         +       + + S Y + + +     K     +  +   +    + I
Sbjct: 314 KRGGFNPKTEPKGADAPSQDAEDIVSEYNEKYAIVLHGGKLRVMVETPSDNPFKEPYELI 373

Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
           T    +F+   + DV  L++    N K  +  + W ++  +R             +++  
Sbjct: 374 TKG--DFISLTEHDVVFLAD-ANGNPKRVQKSKIWRDSSEKRIYEGGLVFEPGKGRTV-- 428

Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
                            L    G       Q +K    L+            +     LD
Sbjct: 429 --------------GNALNMWRGW----QYQPIKGDWSLFKQHILKVCGGNEKHYNWMLD 470

Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
            ++   +                   N     + ++GV G+GK T+ N+    FG  Y  
Sbjct: 471 WMADAIQDP----------------MNPKGCAVILKGVEGAGKGTIFNIFGELFGRYYKH 514

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTAR 590
             +   ++                L  + +V   E      +  A  +K +T    +   
Sbjct: 515 IVQEDQLVGKFN----------AHLQEALLVFADEVTYGGSKKVAGVLKGITTEKSLMVE 564

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
               +            I  N+  F+     +  RR+ ++     +A++D  F       
Sbjct: 565 RKGLDA-VRYRNCMRLGIASNESWFIPAGPQS--RRWFILEVPSDVASKDDYFTPLYRQM 621

Query: 651 YTLE 654
               
Sbjct: 622 EKEG 625


>gi|67923658|ref|ZP_00517127.1| hypothetical protein CwatDRAFT_2551 [Crocosphaera watsonii WH 8501]
 gi|67854499|gb|EAM49789.1| hypothetical protein CwatDRAFT_2551 [Crocosphaera watsonii WH 8501]
          Length = 956

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 109/370 (29%), Gaps = 80/370 (21%)

Query: 14  IHNGFKLIPLRLGDKRPQRLGKWEE----------------QLLSSEKIDKLPAC--GFG 55
           I + + L P++  DKRP R   W+E                Q L S    +      G G
Sbjct: 44  IPDNWVLTPVK--DKRPLRP-NWQEEEAIARCDLIELLVAGQKLKSSNGKEWHCHWTGIG 100

Query: 56  FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
              G     + A D D    +           L  TP    G+  +  + +R++ E  +K
Sbjct: 101 LRLGTVSGGVLAIDADGDLAEAKLQELS-GGDLPLTPCWTSGKPGRRQLLYRISPEYWEK 159

Query: 116 KKTTESTQG---HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRF--------------- 157
            KT +   G   HL+    G   V          +Y W   P                  
Sbjct: 160 IKTVKIDCGQGQHLEFRWDGCQSVLPPSKHPETGQYHWLVSPEESAQRNAQNQELTEKNG 219

Query: 158 KVEDTPLLSEEDVEYLFKFFQEITVPLVKDK----------------------------- 188
           +   T +  +  +E+L +  Q +       K                             
Sbjct: 220 EDVATAIAPDWLIEFLLQQNQPVYSDSPSLKLPCTENSSSENAPHKPVNELQGGQTHSDE 279

Query: 189 ----KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244
                  + S   T + ++++T+ +           +    +D+W+ V MA+   + G  
Sbjct: 280 SQPIYPPVYSSKGTYSPSQKWTDEDWARSYLEALASWRADDYDQWVQVGMALQSVSDG-- 337

Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304
                   WS+Q S Y       KW +F   +         +        G   P    +
Sbjct: 338 -LLWDWEHWSRQSSKYKPGGCERKWRSFKPSKGISIG----SLAQWAKEDGWQSPFKSQS 392

Query: 305 SRFSDAYNKA 314
           S F +  N+ 
Sbjct: 393 SSFQETLNRE 402


>gi|149017871|ref|ZP_01834330.1| putative phage replication protein [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931435|gb|EDK82413.1| putative phage replication protein [Streptococcus pneumoniae
           SP23-BS72]
          Length = 492

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 108/341 (31%), Gaps = 22/341 (6%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
             +  Q+GI++LET +    + +  IT    T +   +          F D ++      
Sbjct: 133 NLIPVQNGIINLETKELFPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 192

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E++  F + +  A+   +   +F    G G +GK T    +    G   +   + +   
Sbjct: 193 SELVTLFWQIILEAINSNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 252

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           +           +L  L+G    I  E       N + +  +T GD +      G    E
Sbjct: 253 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 302

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
           +          N      N    W+RR +++PF+            K E     E  ++ 
Sbjct: 303 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANDEVLEYA 362

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG--ENLWEESHSLAK 716
           L               P+      EE ++  D   +W+  +  + G  E        L +
Sbjct: 363 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEENDYLLSWVKHEYMERGWHELDVVPVFILTR 421

Query: 717 SYSEYREQELNYDRKRIST-RTVTLNLKQKGFIGGIKREKI 756
           S   Y E             +    +L+Q        R+K 
Sbjct: 422 SLKHYAEDMGIPKPNVYGAGKETIKHLQQLTPNRYSLRKKR 462


>gi|116326764|ref|YP_803301.1| hypothetical protein TNAV2c_gp078 [Trichoplusia ni ascovirus 2c]
 gi|102231772|gb|ABF70595.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
          Length = 1046

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 162/449 (36%), Gaps = 47/449 (10%)

Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK-----GHFLYTADTKAWYKKDKNNVY-- 342
           L   +        + S             +KK        ++  +   W    + + +  
Sbjct: 522 LNDENEDEDIDFTILSDTDVDIANVFLKAWKKKIMYLDDVMFKFNGTLWKYAQEEDAFLR 581

Query: 343 ----IWSLTLDKITASIMNFLVSMK-EDVFDLSEE----------PEDNNKNSKSPRFWF 387
               +W     +I    +  L  ++  +   +  +           +     ++  +   
Sbjct: 582 RALTVWVEKFKRIADDHVQELKQVEVNEAMAIVNDGGGSRNRTLPKKQPVTRAEYLQKVI 641

Query: 388 NTDYRR-QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
           ++ +R+ +N    S      +++            +D++      +D +   ET      
Sbjct: 642 DSIWRKCKNSNTQSGIVKAIKTICTTGAGHDEMVQMDNNENLTAFEDMVFCNETLTMRNG 701

Query: 447 TKELYITKSTGTPFVEGEP-----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501
             E  +++     ++  E       +      S  F  +E+ +YF         G N  +
Sbjct: 702 RPEDMLSRCLKCKYIPYEQLEPEAIEFVNIFYSSLFPDKEICEYFQLSCSQIFGGRNVFK 761

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
           ++    GVG +GKS  + L +   G  +    ++           G ANP + RL G R+
Sbjct: 762 QYQVWTGVGNNGKSMCIKLFETMLGRLFSKLNKSVLTSLK--HNIGAANPDMYRLRGVRM 819

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY--SESPASFTPFIVPNKHLFVRNP 619
           V+  E  ++DE+N  + K ++GGD   AR  Y  +   +   A F P IV N    +R+P
Sbjct: 820 VVTDELAKSDELNVGQTKLLSGGDSFIARDLYQKSTQMATIKAQFIPIIVCNDLPLLRDP 879

Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
           D+A WRR  VIPF+   A     ++ +LE    +  ++  ++     I   ++  +P   
Sbjct: 880 DEAAWRRERVIPFESYFA-----YSNELEIPEEIPKER--IQMRDDNIMVKINKYMPAFA 932

Query: 680 LKAKEEE-----RQGTDTYQAWIDDCCDI 703
               ++       + +  Y    DDCC+ 
Sbjct: 933 SCLLKKYIDFEKLRRSSPYN---DDCCEK 958


>gi|307578050|gb|ADN53668.1| primase-like protein [Staphylococcus aureus]
          Length = 750

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 91/775 (11%), Positives = 223/775 (28%), Gaps = 96/775 (12%)

Query: 27  DKRPQRLGKWEEQLLSSEKIDKLPA-----------CGFGFVCGVGEQPLYAFDIDSKDE 75
            K P     ++    +S+      A            G GFV           DID+  +
Sbjct: 42  SKIPYSYAGYKASSTNSDTWTIFDAINSIYEQNERYDGIGFVI-SEHDNYIVLDIDNAID 100

Query: 76  KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135
           +++    +    +              L  F   +   ++KK        +++    ++ 
Sbjct: 101 ESSQITSNLALDMTKMTYCEKSPSGTGLHCFFKGELPKERKKKRSDL--DIELYDNARFM 158

Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195
                     +            + +     EE  E                 KS +  +
Sbjct: 159 TMTGESI--GQREISDDQSLLNNLVERYFKQEELPETFIGNN--------ITNKSNLDDE 208

Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH----ETRGSSKGKEIAR 251
              N   +     +I+  L    E +++   +    V   +H+     ++   + + I  
Sbjct: 209 DVINIMLKSKQKDKISNLLQGNYEPYFDSPSE---AVQSLLHYLAFYTSKDKEQMERIFL 265

Query: 252 RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311
            ++     +  +  N  W   + ++  +   +      ++   GK  P  L         
Sbjct: 266 NYNNLTDKWGSKRGNTTWGQLELDKAINNQSE------VYVKPGKENPSKL--------- 310

Query: 312 NKAMFSIYKKGHFLYTADTKAWYKK---DKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
                               +W+     D N    ++ T+          +V   +   D
Sbjct: 311 ----------------IKKGSWWFYPNDDTNRKPKFNHTIMAKFICQEYHIVRYPDADSD 354

Query: 369 LS--EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
           +          +  K+ R          N+++NS  +     ++   + S+ ++      
Sbjct: 355 IYIYNTQTGIYELDKTGRKLRKIIRSLDNLKDNSVKEVRNYIVDMCDVRSVVNNE----- 409

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-MDY 485
            ++  ++G++   T      T ++++     T +      +     +     + E  +  
Sbjct: 410 -YVAVKNGLVHYHTKIFRTFTPDIFVIDKLPTAYNPNAYDEFVDTTIQKVSCNHETTIMN 468

Query: 486 FTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                   L       + I++ G    +GKST+ ++IK  F +   I++ +       P 
Sbjct: 469 IYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATFDSGGRISSVS-------PQ 521

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                + +   + G    ++ +    +  +A  IK    G  +       ++ S      
Sbjct: 522 RLANNHFAGSSIYGKMANMVDDLPNVEIEDAGNIKTAITGGYLEIEQKGKDSQS-VRMQT 580

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA------QKLETKYTLEAKKW 658
              I  N +   +   +   +R  +IPF+    +     +      +           K 
Sbjct: 581 PFIIASNHYPKFKESGEQINKRLHIIPFNYSFKDDQERLSVTESTNKIYNKSAKEYVLKL 640

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQG-TDTYQAWIDDCCDIGENLWEESHSLAKS 717
            +  +   + +      P        E      +    ++++  +I   L        K 
Sbjct: 641 AIDTLADMLQRDGSYITPNERSDKSAELFSDNNNPLSEYLENR-NIDFFLNNPGAETYKD 699

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
           Y  +      + RK ++     + L +  +    KR     E   +   K  KLK
Sbjct: 700 YKVWCHSN--FIRKPVNKDDF-ITLLENYYDIEWKRSVKYTENNVRWGFK--KLK 749


>gi|317495911|ref|ZP_07954274.1| phage/plasmid primase [Gemella moribillum M424]
 gi|316914088|gb|EFV35571.1| phage/plasmid primase [Gemella moribillum M424]
          Length = 787

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/652 (11%), Positives = 183/652 (28%), Gaps = 77/652 (11%)

Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA----FL 214
           +   P++ + +     K    +  P+ +  K     K     ++ + ++ +       +L
Sbjct: 135 LSGLPIVKKGNEHIFIKHLDGLPYPVQEAAKEEKKVKVEYTASDVRLSDEDFKEMFIRYL 194

Query: 215 SCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD-EENFNYKWDTFD 273
               E    G  +E+   +  +            +AR    +  +YD     +       
Sbjct: 195 ELDNENLNPGDSEEYNRALSVL----------LSLARDVCYKDISYDVACECSDLLANIG 244

Query: 274 FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW 333
                      +                     +S      +    K  +F Y    K  
Sbjct: 245 ANPDKYREDNLNKINHAIKSWQSNSNYFENEKSYSMLQRFEIVGNKKDKNFAYLVRCKLN 304

Query: 334 YKKDKNNVYIWS----LTLDKITASIMN------------FLVSMKEDVFDLSEEPEDNN 377
                 +   W         +   +I+N            F +  K    ++  +    +
Sbjct: 305 KPISNTSELHWRLFTIGEQWRKENTIVNKKTGKKIISQMPFYIIAKFLQENIPIKKGGIH 364

Query: 378 KNSKS--------------PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           +++                  +      + +   + +K K   + L A    +   +   
Sbjct: 365 EDTALLFFYDFSKGIYTSNEDYIKTCIKKLEIRYKLTKLKDITEDLRA----NTKFEKPY 420

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE---------PSQEFLDLVS 474
                +   +G+ + +T        + +IT    T +                 + + ++
Sbjct: 421 RPEHLIAVGNGLFNTKTKLLESFNPKYFITAKVDTNYNINALKNYEAIKDIYFNYDNWLN 480

Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
                  E++  F +    A+      ++   + G G +GKST   +I    G+  +  A
Sbjct: 481 SIACGDPEIIALFWQLTNEAINPNKTRRKIAIMLGSGTNGKSTFRQMIINLIGDTNISVA 540

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
              ++         ++   L  L G       E          K+K ++ G+ +   L  
Sbjct: 541 TPHEL---------QSRFGLTSLEGKICNYGDEVGTKPLDEMDKLKSISSGESVNYELKN 591

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
            +               N+   +++  +A   R ++IPF            +  + K   
Sbjct: 592 KD-VRNYDFKTLLIFNSNEIPLIKDKSEAVLNRLLIIPFKANFEGVKDESIKDEKLKDK- 649

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEES 711
              ++ L    A   +     +P+   +  E  +Q  D+   ++    D G         
Sbjct: 650 RILEYIL--YTALNLEFDKFIVPKAVQQQLEVYKQENDSIYNFMLSYIDEGYHRVSCVPI 707

Query: 712 HSLAKSYSEYREQELNYDRKRISTR---TVTLNLKQKGFIGGIKREKIEKEW 760
             +   Y  Y  +     RKRI  +    +    K   +   +K  +  KE 
Sbjct: 708 SFITNDYENYCYENGYNPRKRIGKQLEIHLNNRFKGDIYQYEVKNHRFTKEN 759


>gi|228961470|ref|ZP_04123081.1| DNA primase [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228798184|gb|EEM45186.1| DNA primase [Bacillus thuringiensis serovar pakistani str. T13001]
          Length = 812

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 128/389 (32%), Gaps = 27/389 (6%)

Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444
           F        +    N+KA+     L   +     ++    S   +  Q+G+ +L+T +  
Sbjct: 413 FIKRVISWLEPRLNNTKAEEVIYHLTNKAEVQEKTN----SRYLIPVQNGVFNLKTKKLE 468

Query: 445 KPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGY-FESEEVMDYFTRCVGMALLGGN 498
             T +   T    T + E   +           V        E+ +   + +  AL G  
Sbjct: 469 PFTADYVFTTKITTRYYEDPVNPILDGWDVVSWVKSIACGDLEIENLLWQVMNDALNGNY 528

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
             ++ I + G G +GK T   LI    G + +   + ++  +            L  L G
Sbjct: 529 SRRKSIFLIGEGNNGKGTFQELIMNLIGMKNIATLKVNEFDE---------RFRLSVLEG 579

Query: 559 SRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
              VI  +   N  I+ +     +  GD ++           +    +     N     +
Sbjct: 580 KTAVIGDDVPANVYIDDSSNFNSVVTGDMVSVEFKNR-PIYNTVFRCSVIQSTNGMPKFK 638

Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
           N  +   RR +++PF      +  +F  K E        ++ L   +A        DIP+
Sbjct: 639 NKTNGTIRRIVIVPFQADFNGKTENFKIKDEYIKDERVLQFVL--YRAINMDFETFDIPK 696

Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737
           V L+  E  +Q  D    +      I +    +       Y  Y++  ++   K ++ R 
Sbjct: 697 VSLQELEVFKQDNDPVLDF---KLSIFDEWGIQEVPKYIVYGFYKKFCMDNGYKYLADRQ 753

Query: 738 VTLNLKQ-KGFIGGIKREKIEKEWKSKRI 765
                ++  G      + +   +   K +
Sbjct: 754 FYKQFRRYLGEEWEDSQNRFRYDSLIKYV 782


>gi|90961737|ref|YP_535653.1| Phage DNA primase [Lactobacillus phage Sal1]
 gi|90820931|gb|ABD99570.1| Phage DNA primase [Lactobacillus phage Sal1]
 gi|300214516|gb|ADJ78932.1| Phage DNA primase [Lactobacillus salivarius CECT 5713]
          Length = 289

 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 108/288 (37%), Gaps = 27/288 (9%)

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           ++++     +       N+  +F  + G G +GKST +++I+   G++ + + + S++ Q
Sbjct: 10  DLVNLLYEIIAYTFYRRNELGKFFILTGSGANGKSTYLDMIRTLLGSKNISSLDVSELDQ 69

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
                          L G    I  + +++   + + +K++  G+ +TA     + +   
Sbjct: 70  ---------RFKTGELAGKLANIGDDISDSYIKDTSILKKLVTGEAVTAERKGLDPFM-F 119

Query: 601 PASFTPFIVPNKHLFV--RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
                     N    +   +   A  RR +++PF+   + +D  +  K   KY L  +  
Sbjct: 120 ENYSKLLFSANSIPRLGKGSDTKALNRRMVIVPFNATFSPKDPDY--KPYIKYDLRQENA 177

Query: 659 F-------LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                   ++ +   +         E+  +  E+     +    + DD  +  + L + +
Sbjct: 178 IKYLIVKSIEALHRILENN-GFTKSELADRELEKYEYENNPILGFFDD-LEETDYLNQPT 235

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
             + K Y+EY  +        +S  + +  +    F    K  ++  +
Sbjct: 236 KDVYKLYTEYCLRNG---LNSVSNISFSRQITSH-FNLTSKSSRVNGK 279


>gi|309812094|ref|ZP_07705854.1| D5-like protein [Dermacoccus sp. Ellin185]
 gi|308433973|gb|EFP57845.1| D5-like protein [Dermacoccus sp. Ellin185]
          Length = 875

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/574 (14%), Positives = 184/574 (32%), Gaps = 90/574 (15%)

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
                        L+      + +++A+     + Y      + AD K W          
Sbjct: 302 DYAPGEPTLLRQALMQGHDADADWAEAWVANRAARY----ARWVADMKTWMVWRAPIWEP 357

Query: 344 W-------------SLTLDKITASIMNFLVS-MKEDVFDLSEEPEDNNKNSK-------- 381
                              +    ++N  +  ++E +  L EE    +K+          
Sbjct: 358 CGVPLSHLSSWLLDEARRIEPEVGVLNEEIEPLEEQIAALKEEQSAYDKDDDEWKELAAE 417

Query: 382 -------------SPRFWFNTDYRRQNVEENSKAKSTAQ-SLEAGSIFSITSDLLDSSSR 427
                                +   ++     + ++ A  + +  S   I +  LD +  
Sbjct: 418 VGKLTHEINGKSARRDAVKRIEKTIRDARSRRRMEAIAAVAADLSSPMRIMTADLDPNPH 477

Query: 428 FLGEQDGILDLET------GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
            +   +G+L L+        + V    E+  T   G  +   E +   LD +       E
Sbjct: 478 AIPMSNGMLRLDDLDESGAPRLVPHAPEMLSTIKPGCEWRGLEATSPLLDALLEALPDFE 537

Query: 482 VMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
              +    VG  LLG     +  + + G   +GK+ LM+ I  AFG+   +  +      
Sbjct: 538 TRTFLQWIVGADLLGTSTSYRWLVQLVGPESNGKTLLMDAIHGAFGDSVRLLTDEVL--- 594

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
               E G  +P  ++L G R+  + E    D I A ++K++ G   ++AR  +       
Sbjct: 595 -GGTEPGAPSPGQMKLRGCRLGYLEEVP-GDIIRAHQLKRLVGTPTLSARELHK-GLVTW 651

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---------------RDASFAQ 645
            A+ +  ++ N  + +   D A + R  ++ F     +               R+ + A 
Sbjct: 652 RATHSLMLITNDVVQIAGGDAAAYGRVQLLKFPFTFTDDPTLLEMGEQSGYRPRNPALAA 711

Query: 646 KLETKY---TLEAKKWFLKGVKAYIS-----------KGLDVDIPEVCLKAKEEERQGTD 691
            ++++          W ++G   Y++           +GL + +P    +     R   D
Sbjct: 712 AVKSREPDLMAAVAAWAVRGSLDYLAAQEDPERRQLGRGLGMPLPREVERETSRWRGDVD 771

Query: 692 TYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN---LKQKG 746
              + + +  ++      +  +  L   ++   +Q         +          L+   
Sbjct: 772 AAAS-LAEYLEVTGDPTHFLPNDDLKILWTFTSDQTGRSAPSARTVNDRVSKAEPLRSAL 830

Query: 747 FIGGIKR--EKIEKEWKSKRIIKGLKLKPAFESV 778
             G + R     +   +S R   G++L  A  +V
Sbjct: 831 ARGDVTRPNSPRKVGGRSVRGWAGVRLTAAGHAV 864


>gi|148988895|ref|ZP_01820310.1| DNA primase [Streptococcus pneumoniae SP6-BS73]
 gi|147925706|gb|EDK76782.1| DNA primase [Streptococcus pneumoniae SP6-BS73]
          Length = 496

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 106/322 (32%), Gaps = 22/322 (6%)

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL---LDSSSRFLGEQDGILDLETGQKV 444
           N  +R+  ++ +S+  S    LE  S     + +   LD   R++   +G+ +++T +  
Sbjct: 92  NDIFRKLLLKYDSRLTSNKFFLELISYIRTETKMKPPLD-DYRYIPVANGVYNIKTHKLE 150

Query: 445 KPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY-FESEEVMDYFTRCVGMALLGG 497
           + +    IT    T +             +F   +       +EV+    + +  A+   
Sbjct: 151 EFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEALAVNDKEVVALLWQVINEAINPN 210

Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
              ++ + + G G +GK T   L++   G   + N +     +            L  L 
Sbjct: 211 RTRKKMVLMVGDGNNGKGTFQTLLENLIGRSNISNLKPDQFGKE---------FYLGALE 261

Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
           G    I  + +       + +  +  GD +           E+          N     R
Sbjct: 262 GKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKKSLQP-VEARFRLLCIFSGNDLPRAR 320

Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
           N    W+RR  +IPF      +      K       E  +W L  V            PE
Sbjct: 321 NKTMGWYRRLCIIPFRADFNGQKERHEIKDRFIKNKELLEWVLFKVLNM-PDFDSFIEPE 379

Query: 678 VCLKAKEEERQGTDTYQAWIDD 699
              +   + +   D  + W+++
Sbjct: 380 AVKEMLSKYKNDNDYIKVWVEN 401


>gi|327198746|emb|CCA61447.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
          Length = 925

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 130/398 (32%), Gaps = 24/398 (6%)

Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
           T+   +  E          +     + +     +D +       + + D+  G   K   
Sbjct: 525 TEKETKYCETQKNKAGLRMAFIEHIVDNDFESKIDENLDVFATANCVYDVGEGALRKARP 584

Query: 449 ELYITKSTGTPFVEGEPS---QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505
             ++  +TG  + E           +     F   +  D     +   + G    ++ + 
Sbjct: 585 HDFVYTNTGWDYDERAADEHLPAVREFFERVFPVAQERDVVVTYLASLIHGYRTDKKLLA 644

Query: 506 IRG--VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
                 G +GK+TLM L++  FG+          +      +    +     L G R++I
Sbjct: 645 FTDKRNGNNGKTTLMTLLRTFFGDY-TKTNNNFFLKGAFAKDKDAHDGGTATLKGKRLLI 703

Query: 564 ISETNENDEINAAKIKQMTGG--DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNP 619
             E  ++  ++   +K +TGG    +  R                 ++ N+         
Sbjct: 704 CDELKKSMRLDEGTVKNITGGANQELQGRRMGKEDVFRLTVQCGVILIFNEGDCPKFDAT 763

Query: 620 DDAWWRRYIVIPFDKPIA--NRDAS---FAQKLETKYTLEAKKWFLKGVKAYI----SKG 670
           D+A+  R +++PF         D     F +        +  +  L  +K +I      G
Sbjct: 764 DNAFMERLVIVPFRSKFVGGEADPDTYTFQRDCNISDKFKLWRSAL--LKHFISHCRKNG 821

Query: 671 L-DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           + D+++P   +  K E  +  +    W+ D     E  + +   L + Y +    E  + 
Sbjct: 822 IADMEMPSSMVDWKNEILEENNVVAEWLWDAVRPQEGSFVQLAELRERYKKDHPHERAFK 881

Query: 730 RKRISTRTVTLNLKQKG-FIGGIKREKIEKEWKSKRII 766
            K I  R +      KG ++       I+   K  R +
Sbjct: 882 NKDI-ERMINSAFNAKGAYVKDHHNYYIDGARKQGRRV 918



 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 104/373 (27%), Gaps = 61/373 (16%)

Query: 21  IPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK---- 76
            P+  G K P  +  W      +E +      G G +CG      +  D D         
Sbjct: 11  FPVNAGTKVPA-VKGW---PRLAESVAAKRGQGLGALCGEK-GGFFVVDCDLLKSDAPES 65

Query: 77  ---TANTFKDTFEILHG---TPIVRIGQKPKILIPFRMNKEGIKKK----------KTTE 120
                  + D    +      P VR  +   +   F  +                    +
Sbjct: 66  FVAGTEAWLDLVGEMPAHVEYPQVRT-RSGGLHAYFAWDPRVKSSVQRYRVCDLFEGEAD 124

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
                +DI+  G+Y V           Y W    H  +    P +  E ++ LF      
Sbjct: 125 DRTVKIDIIADGRYIVCPPTP-----GYAW---LHNSQYVSPPPMPRELLDLLF-----P 171

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE- 239
               V   +++  +    +     Y    I A  +           DEW+ VV AV    
Sbjct: 172 EPADVDRARALCTTFRNVDKATLAYVVEGIPARRADV--------RDEWMRVVWAVADTA 223

Query: 240 TRGSSKGKEIARRWSKQGSTY-DEENFNYKWD------TFDFEEIGDTAKKRSTFTSLFY 292
            +      ++A  +S++   Y   E+    +       TF                S+  
Sbjct: 224 AKNGYDALDVADAFSRRSHKYAGPEDVEAMYRQSNGAVTFGTLVHFSERGLPRDEGSVTL 283

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF--LYTADTKAWYKKDKNNVYIWSLTLDK 350
            +  L+   L A    D   + +      G+   L   D K     +   +Y+ +     
Sbjct: 284 KNTDLLTSDLKAF---DDKVERIDDFEVNGNVINLVCGDLKIRIDINNLAIYV-NGQYRG 339

Query: 351 ITASIMNFLVSMK 363
              + + F   + 
Sbjct: 340 HLKTGLEFENDLS 352


>gi|329313511|gb|AEB87924.1| DNA primase [Staphylococcus aureus subsp. aureus T0131]
          Length = 750

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 91/775 (11%), Positives = 221/775 (28%), Gaps = 96/775 (12%)

Query: 27  DKRPQRLGKWEEQLLSSEKIDKLPA-----------CGFGFVCGVGEQPLYAFDIDSKDE 75
            K P     ++    +S+      A            G GFV           DID+  +
Sbjct: 42  SKIPYSYAGYKANSTNSDTWTIFDAINSIYEQNDRYDGIGFVI-SEHDNYIVLDIDNAID 100

Query: 76  KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135
           +++    +    +              L  F   +   ++KK        +++    ++ 
Sbjct: 101 ESSQITSNLALDMTKMTYCEKSPSGTGLHCFFKGELPKERKKKRSDL--DIELYDNARFM 158

Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195
                     +            + +     EE  E                 KS +  +
Sbjct: 159 TMTGESI--GQREISDDQSLLNNLVERYFKQEELPETFIGNN--------ITNKSNLDDE 208

Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH----ETRGSSKGKEIAR 251
              N   +     +I+  L    E +++   +    V   +H+     ++   + + I  
Sbjct: 209 DVINIMLKSKQKDKISNLLQGNYEPYFDSPSE---AVQSLLHYLAFYTSKDKEQMERIFL 265

Query: 252 RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311
            ++     +  +  N  W   + ++  +   +      ++   GK  P  L         
Sbjct: 266 NYNNLTDKWGSKRGNTTWGQLELDKAINNQSE------VYVKPGKENPSKL--------- 310

Query: 312 NKAMFSIYKKGHFLYTADTKAWYKK---DKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
                               +W+     D N    ++ T+          +V   +   D
Sbjct: 311 ----------------IKKGSWWFYPNDDTNRKPKFNHTIMAKFICQEYHIVRYPDADSD 354

Query: 369 LS--EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
           +          +  K+ R          N+++NS  +     ++   + S+ ++      
Sbjct: 355 IYIYNTQTGIYELDKTGRKLRKIIRSLDNLKDNSVKEVRNYIVDMCDVRSVVNNE----- 409

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-MDY 485
            ++  ++G++   T      T ++++     T +      +     +     + E  +  
Sbjct: 410 -YVAVKNGLVHYHTKIFRTFTPDIFVIDKLPTAYNPNAYDEFVDTTIQKVSCNHETTIMN 468

Query: 486 FTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                   L       + I++ G    +GKST+ ++IK  F +   I++ +       P 
Sbjct: 469 IYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATFDSGGRISSVS-------PQ 521

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                + +   + G    ++ +    +  +A  IK    G  +      G          
Sbjct: 522 RLANNHFAGSSIYGKMANMVDDLPNIEIEDAGNIKTAITGGYLEIEQK-GKASQSVRMQT 580

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA------QKLETKYTLEAKKW 658
              I  N +   +   +   +R  +IPF+    +     +      +           K 
Sbjct: 581 PFIIASNHYPKFKESGEQINKRLHIIPFNYSFKDDQERLSVTESTNKIYNKSAKEYVLKL 640

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQG-TDTYQAWIDDCCDIGENLWEESHSLAKS 717
            +  +   + +      P        E      +    ++++  +I   L        K 
Sbjct: 641 AIDTLADMLQRDGSYITPNERSDKSAELFSDNNNPLSEYLENR-NIDFFLNNPGAETYKD 699

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
           Y  +      + RK ++     + L +  +    KR     E   +   K  KLK
Sbjct: 700 YKVWCHSN--FIRKPVNKDDF-ITLLENYYDIEWKRSVKYTENNVRWGFK--KLK 749


>gi|32455419|ref|NP_862725.1| hypothetical protein pUH24_08 [Synechococcus elongatus PCC 7942]
 gi|97589|pir||S20531 hypothetical protein F - Synechococcus sp. (strain PCC 7942)
           plasmid pUH24
 gi|247792|gb|AAB21875.1| repA [Synechococcus elongatus PCC 7942]
          Length = 876

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 84/282 (29%), Gaps = 30/282 (10%)

Query: 28  KRPQRLGKWEEQLLSSEKIDKL-----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82
           K P     W+   L    + +         G G + G     L A D D      A    
Sbjct: 39  KAPFDP-GWQNNPLDHAAVAERIRSDRRVTGIGLLTGPASGGLIAVDFDGPTAHEALPEG 97

Query: 83  DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH---LDILGCGQYFVAYN 139
            T   L  T     G+  +    +++ +E      T +        L++       V   
Sbjct: 98  LTLTELPPTVAYTSGKPGRHQRLYQVPQERWAAIATQKLHSPDGDLLELRWNKLQSVIVG 157

Query: 140 IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199
            HP+T   Y W      +++ +      E ++ + +          +D+++   S     
Sbjct: 158 QHPETG-AYRWVEGCAPWEI-EVAEAPPELLDAMER----------QDRQTAPKSYKPIV 205

Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259
           +         I   +       Y   ++ W+ V MA+   +       +    WS Q S 
Sbjct: 206 SAPASDDEVAIARTMLAHVPASYADDYESWVAVGMALQSVSDA---LLDDWIAWSAQSSK 262

Query: 260 YD-EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
           +D       KW +F    I        T   L    G   PK
Sbjct: 263 FDGNRKLERKWASFKGSGITIA-----TLAKLAKEGGYRPPK 299


>gi|115298601|ref|YP_762453.1| 94.9 kDa DNA primase/Poxvirus D5 family [Spodoptera frugiperda
           ascovirus 1a]
 gi|114416868|emb|CAL44699.1| 94.9 kDa DNA primase/Poxvirus D5 family [Spodoptera frugiperda
           ascovirus 1a]
          Length = 826

 Score =  156 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/338 (19%), Positives = 126/338 (37%), Gaps = 19/338 (5%)

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLT-LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
             +Y  +   W     +   I     L     +        +       +E +D++ +  
Sbjct: 343 RVMYQFNGNIWRPVRNDEALIRRELPLWFDKFNEYATDYVARLVASGRGDEIQDDDGDES 402

Query: 382 ---------SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
                    + R + +   + +N    S   +  ++L      +  S  +D +   +  +
Sbjct: 403 NAANNLLNATRRKFKSIHRKCKNSAPQSGVITQVRALNTHDAGAYKSTKMDDNDSIVAFK 462

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEP-----SQEFLDLVSGYFESEEVMDYFT 487
           + +   +T    +   E  I++     +V  E       +   D +   F   EV +YF 
Sbjct: 463 NVVFCRDTLTVRRGKPEDMISRCLNCDYVPYEELADDVKKFVNDFLDSLFPDPEVREYFL 522

Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
             V     G N  ++++   GVG +GKS L+ + +   G   V  +++  +      + G
Sbjct: 523 LSVCQIFRGFNIFKQYVVWTGVGNNGKSVLIRMFECLLGPLMVKLSKSVLVCNKM--DIG 580

Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESPASFT 605
             NP + +L G R+ +  E   + +IN  + K ++G     AR  Y          A F 
Sbjct: 581 SVNPDMCKLQGVRLAVTDEIAGSADINVGQAKLLSGNGTFMARDLYMKSSEMEPIRAQFI 640

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
           P IV N    +R PD+A W+R  ++PFD    N    F
Sbjct: 641 PIIVCNALPSLREPDEAAWKRIHIVPFDSYFTNEPDGF 678



 Score = 38.7 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 8/125 (6%)

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGS----S 244
           KS             +     +   +S    E  +   ++W+ V  A+   ++       
Sbjct: 114 KSPGREVDTYGPEELKSFRAYLKKCISILNPER-SIDRNQWMRVYWALKDCSKRGLLEYD 172

Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304
           +       +S Q + Y+ +     W   D     D    R T+ SL +   K  P     
Sbjct: 173 EAFVCFDNFSSQWTHYNPQEIRDMWLKNDESIDDDR---RITYRSLLFDAHKDDPSTYAK 229

Query: 305 SRFSD 309
              + 
Sbjct: 230 LTRAH 234


>gi|150019806|ref|YP_001312060.1| ATPase-like protein [Clostridium beijerinckii NCIMB 8052]
 gi|149906271|gb|ABR37104.1| ATPase-like protein [Clostridium beijerinckii NCIMB 8052]
          Length = 615

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 97/557 (17%), Positives = 176/557 (31%), Gaps = 31/557 (5%)

Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296
           H      S   +  +        ++      K + ++  +     K+   + + F     
Sbjct: 44  HKNLDIFSDAIKTFQNAENMFLNFEIVKTLSKLEQWNNLKEYSQTKESEVYYNAFIDKIT 103

Query: 297 LIPKGLLASRFSD-AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASI 355
                L      + A NK  F  +  G+     ++      DK     W+ +   +    
Sbjct: 104 GNIDKLKDISLIEFADNKQAFLSFVNGNLRALINST-----DKKRFAYWNGSTWSLLTDE 158

Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
              ++    D            + S     W     +    +     K     ++  S  
Sbjct: 159 ETQIIY--GDFIQKCNIELSAGQGSLKYEDWLELAKKITKWDTGRNTKEALDKIKRESSR 216

Query: 416 SITSDLLDSSSRFLGEQDG-ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
            I     D ++  +   DG I++L TG+    T+   I  ++    V  E S +F+    
Sbjct: 217 IIDLKKYDLNNNIICSNDGKIINLNTGEIKNATRNDMILFTSEYNLVNKEESIKFMSEKM 276

Query: 475 GYFES---EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
             +      E +D+    +   +L     Q  I + G G +GKS+L N+I+  F  +   
Sbjct: 277 SIYLDIIGNERLDFILDLIAYKMLNR-SLQSAIFMIGAGATGKSSLKNIIRDLFKTESST 335

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
                    NR       +  L  L   +I   SE  E   I++AK K++      +AR 
Sbjct: 336 IPYDYMTTMNRGNSDASRDDILASLDNKKIAFCSEGEEEKIISSAKFKKILSHADESARK 395

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLET 649
                 + S  +       N        D A  RR I + FDKPI    R+A + +    
Sbjct: 396 TNEGLTNVSLQNLDIVFDTNAMPSFSTMDSAISRRLIFVKFDKPIPIEKRNADYYKDEIF 455

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
                   +F+   KA    G  ++IP+        +    D+  ++        E  + 
Sbjct: 456 PNFDYVFSYFV--YKAIDMIGKKLNIPDCVKNDTSTKLSEVDSLLSFSKRIITPFEGSYI 513

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
           +     + Y  + E+E        S +                  K  +  +   II  L
Sbjct: 514 KYSEFEEEYLNFCEEEGLESVIPYSFQDTG--------------NKKNQTKRCNYIINLL 559

Query: 770 KLKPAFESVDDNSNIID 786
           K K  F S+     I D
Sbjct: 560 KEKEGFSSIYKGKRISD 576


>gi|237744355|ref|ZP_04574836.1| phage/plasmid primase [Fusobacterium sp. 7_1]
 gi|229431584|gb|EEO41796.1| phage/plasmid primase [Fusobacterium sp. 7_1]
          Length = 457

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 128/367 (34%), Gaps = 32/367 (8%)

Query: 423 DSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
           +     +  ++G++++   +    + T ++  T      +       + L+ +S     +
Sbjct: 109 EKDINHISVKNGLINITDDEIVLYEHTSKIVTTFYIDYDYNPNADYTDILNYMSELVGDD 168

Query: 481 E-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
           E +       +G  L      ++ + I+G   +GKS  + ++K  FG+    + +  DI+
Sbjct: 169 ESLTRILMEFLGYCLYPDCFLRKALVIKGDHRNGKSKFLEVLKIFFGDNNCCSLDIQDIV 228

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
                    +   L  +M   I +  + +     + +K K++  G+ +       + +  
Sbjct: 229 ---------SRFGLFGIMNKSINLGDDISGQYIGDDSKFKKVVAGNDVLIEQKGKDAF-T 278

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----DASFAQKLETKYTLE- 654
              +       N      +   A   R I IPF    +      +    +++ T   +E 
Sbjct: 279 YKPTAKHIFSCNNMPRFDDKTGAVKDRLIFIPFPNVYSVENGNLNPHIVKEMTTNENMES 338

Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
                L+ +K  +                +E  +  +    +I++   I EN +    + 
Sbjct: 339 LLVLALQSLKELLKNN-KFTYSYKSENCLDEFDKDKNPILYFIEE---IQENSYLRDKAF 394

Query: 715 -----AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
                A++Y +Y     +   K I+    + ++K       IK   ++    + ++ K  
Sbjct: 395 NNMPVAEAYDKYINFCQSNGFKAITKINFSKSIKAN-----IKNIDVKPYKNNGKVNKVF 449

Query: 770 KLKPAFE 776
           ++    E
Sbjct: 450 RILDQQE 456


>gi|225860023|ref|YP_002741532.1| DNA primase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229141|ref|ZP_06962822.1| DNA primase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255123|ref|ZP_06978709.1| DNA primase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298501767|ref|YP_003723707.1| DNA primase [Streptococcus pneumoniae TCH8431/19A]
 gi|225728196|gb|ACO24047.1| DNA primase [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237362|gb|ADI68493.1| DNA primase [Streptococcus pneumoniae TCH8431/19A]
          Length = 521

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 106/322 (32%), Gaps = 22/322 (6%)

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL---LDSSSRFLGEQDGILDLETGQKV 444
           N  +R+  ++ +S+  S    LE  S     + +   LD   R++   +G+ +++T +  
Sbjct: 117 NDIFRKLLLKYDSRLTSNKFFLELISYIRTETKMKPPLD-DYRYIPVANGVYNIKTHKLE 175

Query: 445 KPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY-FESEEVMDYFTRCVGMALLGG 497
           + +    IT    T +             +F   +       +EV+    + +  A+   
Sbjct: 176 EFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEALAVNDKEVVALLWQVINEAINPN 235

Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
              ++ + + G G +GK T   L++   G   + N +     +            L  L 
Sbjct: 236 RTRKKMVLMVGDGNNGKGTFQALLENLIGRSNISNLKPDQFGKE---------FYLGALE 286

Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
           G    I  + +       + +  +  GD +           E+          N     R
Sbjct: 287 GKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKKSLQP-VEARFRLLCIFSGNDLPRAR 345

Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
           N    W+RR  +IPF      +      K       E  +W L  V            PE
Sbjct: 346 NKTMGWYRRLCIIPFRADFNGQKERHEIKDRFIKNKELLEWVLFKVLNM-PDFDSFIEPE 404

Query: 678 VCLKAKEEERQGTDTYQAWIDD 699
              K   + +   D  + W+++
Sbjct: 405 AVQKMLSKYKNDNDYIKVWVEN 426


>gi|46202140|ref|ZP_00053695.2| COG1197: Transcription-repair coupling factor (superfamily II
           helicase) [Magnetospirillum magnetotacticum MS-1]
          Length = 1185

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 101/288 (35%), Gaps = 36/288 (12%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKW--EEQLLSSEKIDKLP------ACGFGFVCGVG 61
           A      G+ +IP+  G KRP     W    + L+ +++ +          G G +    
Sbjct: 14  AVAYRRAGYYVIPVDPGTKRP-DQRGWPIHARNLTVKQVAEWSIDPCTAKYGIGVL---- 68

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE---------- 111
                A DID +  + A+      E + G   VRIG  PK L  +   ++          
Sbjct: 69  ALATPAIDIDVRHPEAADEIDAAAERILGPAPVRIGAWPKRLRVYSGPEDMPYTSVGECA 128

Query: 112 GIKKKKTTESTQG-HLDIL-GCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVEDTPLLSEE 168
                   +  +  ++++L G G+ FVA  IHP T K Y W +     +  +    ++ E
Sbjct: 129 FPGDDTAAKGYKWHNVEVLSGGGKQFVAAAIHPGTGKPYQWPSGDLLAWPHDRLTAITAE 188

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT-----NREITAFLSCFGEEFYN 223
            VE      + I        K     ++   +   + T     N  ++           +
Sbjct: 189 MVEAFLAEVRVILARHGAVSKGG---RSAITSGGDRRTSVTGNNVGLSRVAEALAHVPND 245

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
             + +W+    A+         G ++ R WS++   YD +     W  
Sbjct: 246 ADYHDWVRYAYALKGAF--GEDGFDLWRDWSERSDKYDADYTETTWAG 291


>gi|282917366|ref|ZP_06325120.1| DNA primase [Staphylococcus aureus subsp. aureus D139]
 gi|282318718|gb|EFB49074.1| DNA primase [Staphylococcus aureus subsp. aureus D139]
          Length = 750

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/775 (11%), Positives = 221/775 (28%), Gaps = 96/775 (12%)

Query: 27  DKRPQRLGKWEEQLLSSEKIDKLPA-----------CGFGFVCGVGEQPLYAFDIDSKDE 75
            K P     ++    +S+      A            G GFV           DID+  +
Sbjct: 42  SKIPYSYAGYKASSTNSDTWTIFDAINSIYEQNDRYDGIGFVI-SEHDNYIVLDIDNAID 100

Query: 76  KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135
           +++    +    +              L  F   +   ++KK        +++    ++ 
Sbjct: 101 ESSQITSNLALDMTKMTYCEKSPSGTGLHCFFKGELPKERKKKRSDL--DIELYDNARFM 158

Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195
                     +            + +     EE  E                 KS +  +
Sbjct: 159 TMTGESI--GQREISDDQSLLNNLVERYFKQEELPETFIGNN--------ITNKSNLDDE 208

Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH----ETRGSSKGKEIAR 251
              N   +     +I+  L    E +++   +    V   +H+     ++   + + I  
Sbjct: 209 DVINIMLKSKQKDKISNLLQGNYEPYFDSPSE---AVQSLLHYLAFYTSKDKEQMERIFL 265

Query: 252 RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311
            ++     +  +  N  W   + ++  +   +      ++   GK  P  L         
Sbjct: 266 NYNNLTDKWGSKRGNTTWGQLELDKAINNQSE------VYVKPGKENPSKL--------- 310

Query: 312 NKAMFSIYKKGHFLYTADTKAWYKK---DKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
                               +W+     D N    ++ T+          +V   +   D
Sbjct: 311 ----------------IKKGSWWFYPNDDTNRKPKFNHTIMAKFICQEYHIVRYPDADSD 354

Query: 369 LS--EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
           +          +  K+ R          N+++NS  +     ++   + S+ ++      
Sbjct: 355 IYIYNTQTGIYELDKTGRKLRKIIRSLDNLKDNSVKEVRNYIVDMCDVRSVVNNE----- 409

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-MDY 485
            ++  ++G++   T      T ++++     T +      +     +     + E  +  
Sbjct: 410 -YVAVKNGLVHYHTKIFRTFTPDIFVIDKLSTAYNPNAYDEFVDTTIQKVSCNHETTIMN 468

Query: 486 FTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                   L       + I++ G    +GKST+ ++IK  F +   I++ +       P 
Sbjct: 469 IYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATFDSGGRISSVS-------PQ 521

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                + +   + G    ++ +    +  +A  IK    G  +      G          
Sbjct: 522 RLANNHFAGSSIYGKMANMVDDLPNIEIEDAGNIKTAITGGYLEIEQK-GKASQSVRMQT 580

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA------QKLETKYTLEAKKW 658
              I  N +   +   +   +R  +IPF+    +     +      +           K 
Sbjct: 581 PFIIASNHYPKFKESGEQINKRLHIIPFNYSFKDDQERLSVTESANKIYNKSAKEYVLKL 640

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQG-TDTYQAWIDDCCDIGENLWEESHSLAKS 717
            +  +   + +      P        E      +    ++++  +I   L        K 
Sbjct: 641 AIDTLADMLQRDGSYITPNERSDKSAELFSDNNNPLSEYLENR-NIDFFLNNPGAETYKD 699

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
           Y  +      + RK ++     + L +  +    KR     E   +   K  KLK
Sbjct: 700 YKVWCHSN--FIRKPVNKDDF-ITLLENYYDIEWKRSVKYTENNVRWGFK--KLK 749


>gi|237651063|ref|ZP_04525315.1| DNA primase [Streptococcus pneumoniae CCRI 1974]
 gi|237821176|ref|ZP_04597021.1| DNA primase [Streptococcus pneumoniae CCRI 1974M2]
          Length = 496

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 107/322 (33%), Gaps = 22/322 (6%)

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL---LDSSSRFLGEQDGILDLETGQKV 444
           N  +R+  ++ +S+  S    LE  S     + +   LD   R++   +G+ +++T +  
Sbjct: 92  NDIFRKLLLKYDSRLTSNKFFLELISYIRTETKMKPPLD-DYRYIPVANGVYNIKTHKLE 150

Query: 445 KPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY-FESEEVMDYFTRCVGMALLGG 497
           + +    IT    T +             +F   +       +EV+    + +  A+   
Sbjct: 151 EFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEALAVNDKEVVALLWQVINEAINPN 210

Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
              ++ + + G G +GK T  +L++   G   + N +     +            L  L 
Sbjct: 211 RTRKKMVLMVGDGNNGKGTFQSLLENLIGRSNISNLKPDQFGKE---------FYLGALE 261

Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
           G    I  + +       + +  +  GD +           E+          N     R
Sbjct: 262 GKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKKSLQP-VEARFRLLCIFSGNDLPRAR 320

Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
           N    W+RR  +IPF      +      K       E  +W L  V            PE
Sbjct: 321 NKTMGWYRRLCIIPFRADFNGQKERHEIKDRFIKNKELLEWVLFKVLNM-PDFDSFIEPE 379

Query: 678 VCLKAKEEERQGTDTYQAWIDD 699
              K   + +   D  + W+++
Sbjct: 380 AVQKMLSKYKNDNDYIKVWVEN 401


>gi|295101705|emb|CBK99250.1| phage/plasmid primase, P4 family, C-terminal domain
           [Faecalibacterium prausnitzii L2-6]
          Length = 457

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 48/395 (12%), Positives = 124/395 (31%), Gaps = 26/395 (6%)

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
            +       +             K  +  + ++  +     +   D     +   +G L 
Sbjct: 53  DDLPLRGEIYEKLKCCAVNNIPRKITNILEVMKLAAHVEDFAPEADR----VHLANGTLK 108

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           L+ G   +      +       +    P+   +L  + G   +E+ +      +G +L+ 
Sbjct: 109 LD-GSFTEGRPT-IVRSRLPVAYRPDAPAPVRWLSFLDGLLYTED-IPTLQEFIGYSLIP 165

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
            NK QR + I+G GG GKS +  ++   FG         S++      +  +   +   L
Sbjct: 166 SNKGQRMMVIKGNGGEGKSQIGAVLGALFG---------SNMKDGSIGKISENRFARADL 216

Query: 557 MGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
               + +  +           +K + T    +        +Y     +            
Sbjct: 217 EHILLCVDDDMRMEALRQTNYVKSIVTAQGKIDLERKGKQSYQGWMFARLLAFSNGDLQA 276

Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
           + +  D ++RR +V+   +  A R  D   A+K+          W  +G++   +     
Sbjct: 277 LYDRSDGFYRRQLVLTTKEKPAGRVDDPDLAEKM-KAEVEGIFLWAFEGLQRLAANNFKF 335

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
              +     +E  ++  +    +++      +  +    S  L + Y  + E+       
Sbjct: 336 TESQRTRDNREAVKRDNNNVFDFLESEGYIRLKADCTISSKDLYEIYRMWCEENNLT--- 392

Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
            +  R+ + ++        ++          +R+ 
Sbjct: 393 PLKRRSFSESVIANQSKYNLEYCNKITNAAGRRVW 427


>gi|94994243|ref|YP_602341.1| DNA primase [Streptococcus phage 10750.2]
 gi|94547751|gb|ABF37797.1| DNA primase [Streptococcus phage 10750.2]
          Length = 306

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 16/278 (5%)

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
             ++++    + V  +L G    ++ I   G G  GK T   +I    G + V   + + 
Sbjct: 3   GDKDLVQLLWQVVAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKNVAPLKLNQ 62

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNT 596
             +            L  + G  ++I  +      ++  +    +  G+ ++      N 
Sbjct: 63  FSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENP 113

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           Y             N     +N  +  +RR I+IPF K  ++ + ++A K +     E  
Sbjct: 114 YMAI-FKKNVIQSTNGMPVFKNKSNGTYRRIIIIPFKKTFSSAEDNWAIKDDYINRKEVL 172

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
           ++ L   K+          P+V      E ++  +T   ++++  +  E+       L  
Sbjct: 173 EYVL--WKSINLDFDKFYEPKVTQDRMREFKEENNTILKFLNEYLEDVESTRLPVRFLWD 230

Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            Y  +  +      K          L      G  K +
Sbjct: 231 VYQSWCTENGVTKPK---KSNFEKELAINLPDGWEKTK 265


>gi|253999774|ref|YP_003051837.1| ATPase-like protein [Methylovorus sp. SIP3-4]
 gi|253986453|gb|ACT51310.1| ATPase-like protein [Methylovorus sp. SIP3-4]
          Length = 554

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/534 (15%), Positives = 178/534 (33%), Gaps = 59/534 (11%)

Query: 255 KQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKA 314
           K   T  E     K        I     K++T   L   +     + + A    ++    
Sbjct: 68  KDEPTAKEIEQELKIQKQVEANILKDKVKKATKEELAKINPVSSKREMTAPPTIESI--Y 125

Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
           +         LY  D    Y++D  N+Y W+    ++            +DV        
Sbjct: 126 LDRTLADNKTLYIDD----YRRDVGNIYKWTSEYWEV---------QNPDDVRAEITNWL 172

Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE--Q 432
            NN N++             +   NS        +EA +  +  +  + + + +L     
Sbjct: 173 KNNHNTE-----------LSSRNVNSIFNVFYFKMEAFNKVNTNNLYIPTKTHWLVVDQT 221

Query: 433 DGILD-LETGQKVKPTKELYITKSTGTPFVEGEP--SQEFLDLVSGYFESEEVMDYFTRC 489
            G ++ ++  + +  T ++ I      P+   E      F   ++      +        
Sbjct: 222 TGAIEAIKPNKSIPLTYQINIIIKQAGPYTPKETAVDSLFSKFINSSLPELDKQAVMQEF 281

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
            G  L    KA +F+ ++G GG+GKS  + ++     N   +  +   +  +        
Sbjct: 282 SGYCLTSCTKAHKFLFMKGGGGNGKSVHIAIMSTLIPNSVSVRMDTIGLYND-------- 333

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L+   ++  +ET++    N    K  T GD +  R    +  S         +V
Sbjct: 334 -----NLVDKNVIFTTETHKGG-FNEELFKAATAGDKVEIRGIRKDKQS-IKLIAKWILV 386

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA---SFAQKLETKYTLEAKKWFLKGVKAY 666
            N    + +      RR I+I +++   N      +  Q++  +       W L G++  
Sbjct: 387 GNNDFRIEDFSSGIARRMIIINWNESFTNSKDIVRNLEQRIVDEELDIVLDWCLIGLQRL 446

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC-DIGEN--LWEESHSLAKSYSEYRE 723
           IS  L+    E   KA  +     D  + + +D   +       +    +L   + +Y  
Sbjct: 447 ISNKLEFTRCEESEKALFDFLNHADKVRMFANDYQYEYSPEHKHFITKENLYNKFLDYVL 506

Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
           +      ++++     + +K   +    K  K + +   KR++    LKP  + 
Sbjct: 507 KNG---YEKLNAVNFWIRMKNI-YPEIEKDIKSDIKRDGKRVVF---LKPKLQE 553


>gi|257076858|ref|ZP_05571219.1| virulence-associated protein E [Ferroplasma acidarmanus fer1]
          Length = 980

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 105/826 (12%), Positives = 229/826 (27%), Gaps = 94/826 (11%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL--PACGFGFVCGVGEQPLYA 67
           AK+    G  + P + G K P  +  +++      K  ++  P  G     G        
Sbjct: 14  AKKYTKAGLPIFPTKPGSKEPDTVHGFKDATNDFNKFMQMHRPGDGIAMPTGAST--YII 71

Query: 68  FDIDSKDEKTANTFKDT-------------------FEILHGTPIVRIGQKPKILIPFRM 108
            D D   ++     K                      E      +V   Q       FR 
Sbjct: 72  IDPDVAKDENKKPIKKDGKVIRIGLDNLCKQFNLLGLEDSKLQTLVTETQSGGDHFWFRN 131

Query: 109 NKEGIKKKKTTESTQGHL---DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
            K     KK   +    +   DI   G Y V       T+ ++           ++ P +
Sbjct: 132 PKGKPPLKKMQGNENNGIDKVDIQAEGAYVVLPP----TEGKFGKYKFITDVPFDEIPEM 187

Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQY-TNREITAFLSCFGEEFYNG 224
             E   +     ++        +       +    +N +        A ++         
Sbjct: 188 PLEFYNFFAGTEKKSENDADLIEYGGEYHPSNFKFDNEKTPLLISTIADITKRSNTGIGA 247

Query: 225 SHDEWIPVVMAVHHETRGSSK----------GKEIARRWSKQGSTYDEENFNYKWDTFDF 274
               +I   +A H+     +           G E          TY +     K      
Sbjct: 248 EMTMYITGTLAFHNFEEPHALAVLKKVANINGYEKTDWIPIVKDTYKKFGTKDKNGNQHK 307

Query: 275 EEIGDTAKKRSTFTSLFYHHGKLIPKG---LLASRFSDAY-----------NKAMFSIYK 320
                  KK       F+++   I K    L      D              K +  I +
Sbjct: 308 IRGLPWLKKLLAEHKEFWNNYDEIIKNLEILFPENLYDIAERMLNLARVGPAKVVSIILE 367

Query: 321 KGHFLYTADT----KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
             H +  +D     +  Y             L   +A I     +   ++ +      D 
Sbjct: 368 TEHVVTKSDNTTDLEEIYLYHDGFYARGEEELKIESARIYTDAWNKALELANKLAPKTDE 427

Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL-EAGSIFSITSDLLDSSSRFLGEQDGI 435
                +   +   +  ++ +E         ++L +         D  +  S  +   +G 
Sbjct: 428 LSPDTTKAIFEIRESMKKVIERGPTRSQINETLAQLRLATYTNPDKFNPDSH-IPFLNGY 486

Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGYFESEEVMDYFTR 488
           L+ +T +      +L                    + S +F   ++  FE  + +    +
Sbjct: 487 LNTKTWKLEPHNPDLIYLWRIEANLNADKLDVVRLQDSPKFSKFINETFEDRD-IPLILQ 545

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
             G  +      Q  + + G    GK +L+ ++K      Y   +    IM +       
Sbjct: 546 YFGYTMYPDFPRQMVLFMTGRERVGKGSLVRILKKMNPYGYGSISFEKLIMNDN------ 599

Query: 549 ANPSLIRLMGSRIVIISET----NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
              +   + G  +++ +E          I+   I ++ GGD +           +  +  
Sbjct: 600 -RFAFQGIEGKNLLVDTEIMRYHRRGQTIDYRNINKLFGGDVIDLEKKGVTPT-DYISKA 657

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIA--NRDASFAQKLETKYTLEAKKWFLK 661
               + N     +  D+ +  R I++   D  I    R A+    + ++         + 
Sbjct: 658 KGIFLGN-LPLPKVTDEPFLARVILVKTKDHKIEQGERIANIEDVILSEERDTIATLLVH 716

Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
            +    +   +        +  E     +D  + + DD  D    +    +++  S+  +
Sbjct: 717 HLMELSANNWNFTNEMTTDETVELWNLLSDIVEFYTDDEIDDVPEMEIPVNTVYDSFKRW 776

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
            + +       ++ +T T       + G    +K  +    +RI  
Sbjct: 777 SKAKG---IPLMAQQTFTK------YFGKNYIKKRIRGENKERIYV 813


>gi|46201836|ref|ZP_00054256.2| COG3378: Predicted ATPase [Magnetospirillum magnetotacticum MS-1]
          Length = 478

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 115/376 (30%), Gaps = 40/376 (10%)

Query: 419 SDLLDSSSRFLGEQDGILDLET---GQKVKPTKELYITKSTGTPFVEGEPSQ-----EFL 470
            D    +   +    G +              ++     +    ++ G  +         
Sbjct: 114 EDFFARAPIGINCASGFIRFMGEGLPVLEPHHQDHRSRHTLPGQWLPGAEAHPTAGSLLA 173

Query: 471 DLVSGYFESEE----VMDYFTRCVGMALLG---GNKAQRFIHIRGVGG-SGKSTLMNLIK 522
            L+ G F++++     +D      G A LG     +  R I ++G    +GKS +++LI+
Sbjct: 174 RLLDGVFKADDDAAQKVDLLAEVAGSAALGYATKLRQPRAIILKGETAENGKSQILDLIR 233

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
                  + +  A  +   R          ++ L+G  +    E + +  I +   K + 
Sbjct: 234 SLLPANAISSVTAGRMGDERH---------IVGLVGKLLNAADELSSSTAIASDTFKAII 284

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDA 641
            G+ +  R  Y  +  E           N         D    RR  V+ F++ I   + 
Sbjct: 285 TGEPVQGRDVYK-SRIEFRPVAQHLFATNTLPVFQGGMDRGVQRRLQVVSFNRVIPTEER 343

Query: 642 --SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
             +  +++  +       W + G    I       +P+    A  +   G D   AW+ +
Sbjct: 344 IEAIGRRIGEEEPDLLLAWAVAGAARLIRNK-GFTLPQSSRTAMNDWLFGADPVLAWLSE 402

Query: 700 CCDI----GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
             ++           +    + + E+   E   DR   S       +             
Sbjct: 403 QVEVRPLYNPEARVATRHAFERFREWAIAEGFSDRTLPSINGFVQRITAN------TTGV 456

Query: 756 IEKEWKSKRIIKGLKL 771
             +     R   G+ L
Sbjct: 457 EYRRTGQGRFFFGMVL 472


>gi|295105016|emb|CBL02560.1| phage/plasmid primase, P4 family, C-terminal domain
           [Faecalibacterium prausnitzii SL3/3]
          Length = 457

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/395 (12%), Positives = 120/395 (30%), Gaps = 26/395 (6%)

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
            +       F             K  +  + ++  +         D     +   +G L 
Sbjct: 52  DDLPLRGEIFEELKYCAVNNIPRKISNIIEIMKLAAHVEDFPPEQDR----IHLANGTLM 107

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           L+ G   +      +       +    P    +L  ++G     E +      +G  L+ 
Sbjct: 108 LD-GTFTEGKP-DIVRNRLPVFYRPDTPKPVLWLSFLNGLL-YPEDIPTLQEFIGYCLIP 164

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
            NK QR + I+G GG GKS +  ++    G         S +      +  +   +   L
Sbjct: 165 SNKGQRMMVIKGNGGEGKSQIGAVLGQMLG---------SSMKDGSIGKISENRFARADL 215

Query: 557 MGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
               + +  +           +K + T    M        +Y     +            
Sbjct: 216 EHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSYQGWMFARLLAFSNGDLQA 275

Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
           + +  D ++RR +V+   +  A R  D   AQK+          W  +G++  ++     
Sbjct: 276 LYDRSDGFYRRQLVLTTKEKPAGRMDDPDLAQKM-KAEVEGIFLWAFEGLQRLVANNFKF 334

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
              E     +E  ++  +    +++      +  +    S  L + Y  + E+       
Sbjct: 335 TESERTKTNRESVKRDNNNIFDFMESEGYIRLKADASISSKELYEIYRMWCEEN---SLP 391

Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
            + +R+ + ++        ++          +R+ 
Sbjct: 392 PLKSRSFSDSVVANLSRYNLEHTNKITNSAGRRVW 426


>gi|260889939|ref|ZP_05901202.1| putative phage DNA primase [Leptotrichia hofstadii F0254]
 gi|260860545|gb|EEX75045.1| putative phage DNA primase [Leptotrichia hofstadii F0254]
          Length = 683

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 140/399 (35%), Gaps = 29/399 (7%)

Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438
           + K   +  +T   ++ + +   +       E    F+  +     + R+    +GILD 
Sbjct: 302 DRKEGIYTTDTAVLKKAMFDLIPSLKINNKRETMDTFNTLAREGKVNYRYRAVANGILDT 361

Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGMALL-G 496
           +  + +  T ++  T    T +  G  +++   ++  +   +    +     +G  L   
Sbjct: 362 KEFKLLDFTPDIVCTSKIPTNYNPGASTEKADKIIGSFVRDDPFKKNLICEMLGYGLYED 421

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
            N   +F  I G   +GKS  +      FG+  +++ +  D+          +  +   L
Sbjct: 422 KNLIGKFFIIVGDKENGKSVFLRYTANTFGDFNIMSLDLKDL---------GSRFATTLL 472

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
                 +  + + N       +K++  G+ M          SES  +       NK   V
Sbjct: 473 RDKIFNLGDDISGNYIDETDVLKKVVTGEKMVVEEKGKQGRSES-YNIALIFTANKTPRV 531

Query: 617 RNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLE-TKYTLEAKKWFLKGVKAYISKGL 671
           ++P  A  RR +++ FD         RD    QK++  +      K  ++G+K    +G 
Sbjct: 532 KDPTGAVLRRAMLVIFDNDFSVGSPARDNKILQKIKNEEEREGLLKLAVEGLKRLSERGY 591

Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW---EESHSLAKSYSEYREQELNY 728
             +  E  +K   +     +  + +  +   +  + W   + +  +  SY  +  Q    
Sbjct: 592 -FEENEETIKNLIDFDFDNNPIKEFDYEMRTLKTDGWYIGKTADEVHSSYIFWCSQN--- 647

Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
           D + +  R  T   K        K E   K    +RI  
Sbjct: 648 DIRPLRKRNFTKEFKAL-----HKTELKRKRIDGERIFV 681


>gi|228962689|ref|ZP_04123982.1| hypothetical protein bthur0005_59570 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228796994|gb|EEM44311.1| hypothetical protein bthur0005_59570 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 195

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/204 (22%), Positives = 72/204 (35%), Gaps = 22/204 (10%)

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKY 651
              Y E    F  F   N    +   D+  WRR  +IPF  + P   RD    +KL    
Sbjct: 2   RQEYFEFVPDFKVFFTTNHKPIIGGLDEGIWRRVKLIPFHLNLPAHKRDKRLPEKLSL-E 60

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG----ENL 707
                 W ++G   +  +GL    P    +A    ++  D    ++ + C I     E +
Sbjct: 61  MPGILNWAIEGCMKWKKEGLK--DPRAVAEATGRYQEDMDILGPFLSEVCYIDEPKNEAI 118

Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
             E+  L   Y  +         + +  R+    L+ KGF          K   +K  + 
Sbjct: 119 KMEAKELYNVYETWC---FRSGERALGNRSFYRMLETKGFGKT-------KGTGNKTFLT 168

Query: 768 GLKL---KPAFESVDDNSNIIDFK 788
           G+ L   KPA + V  N     FK
Sbjct: 169 GITLFERKPANKRVIKNEENSHFK 192


>gi|312864227|ref|ZP_07724461.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Streptococcus vestibularis F0396]
 gi|311100228|gb|EFQ58437.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Streptococcus vestibularis F0396]
          Length = 507

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 96/281 (34%), Gaps = 18/281 (6%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY- 476
             S  +  ++GI +L T +      +  IT    T +             +F + + G  
Sbjct: 143 QESYLIPVRNGIFNLHTKELEPFIPKHIITTKIATAYNPEAQKPLLGGWFDFDEWLDGLA 202

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
              +E+     + +  A+      ++ + + G G +GK T   L++   G + + N + +
Sbjct: 203 CGDKEITTLLWQVMNEAINPNRTRKKMVVLTGDGNNGKGTFQALLENLIGKENISNLKPN 262

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
              +            L  L G    I  + ++    + + +  +  GD +     +   
Sbjct: 263 QFQEQ---------HLLSALNGKVCNIGDDISDKYLDSVSDLMSIVTGDTIQVNPKHLQP 313

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           Y E+          N     RN    W+RR  ++PF+            K E   + E  
Sbjct: 314 Y-EASYRLLCIFSGNGIPRSRNKSQGWYRRLCIVPFNADFNGTVERPEIKDEFIKSKELL 372

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
           +W L  +    ++              +E ++  D Y +++
Sbjct: 373 EWVLFKILNM-AEFDRFIEANAVKDMLDEYKEDNDFYYSFV 412


>gi|238027975|ref|YP_002912206.1| phage/plasmid primase P4, C-terminal [Burkholderia glumae BGR1]
 gi|237877169|gb|ACR29502.1| Phage/plasmid primase P4, C-terminal [Burkholderia glumae BGR1]
          Length = 519

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 64/464 (13%), Positives = 136/464 (29%), Gaps = 78/464 (16%)

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
           + W+    +    +     ++++                +       +  + +++ E + 
Sbjct: 47  FRWNGVFWEAQRDVALEQDALRQL---------------QKLEPAKYSASKARSMVETAI 91

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD-LETGQKVKPTKELYITKSTGTPF 460
            +                    S+   +  +DG+L+ L +G         +   +     
Sbjct: 92  TRLAGHKPLPVPQK--------STGVLVPLRDGLLEVLPSGVVKAHKPAPHFGVTHAINA 143

Query: 461 V---------------EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505
                              P   F   +     S  + DY   C G  L   N   + I 
Sbjct: 144 SIDWTRVGAEGTYGLLPMTPDSRFGRFIMQVQPSPAMRDYLAECFGSTLSTMNVQ-KAII 202

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G G +GKS  + ++       +  N  A D+ +           +   L+ + +V +S
Sbjct: 203 LEGTGANGKSLCLQILSA-----FHANPVAFDLSRLDGE------FNTEPLVHATLVTVS 251

Query: 566 E-TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
           E       IN    K     D ++                +  +  N+ +   +    + 
Sbjct: 252 EAPPRKRPINENLFKAWVARDPVSVNRKNRVP-LTVKPRASWVLAMNEAMGFSDMSHGFL 310

Query: 625 RRYIVIPFDKPI--ANRDASFAQKLETK--YTLEAKKWFLKGVKAYISKGLDVDI---PE 677
           RR   +PF + I   ++     + +         A  W L G+ A   +G  +     PE
Sbjct: 311 RRIANVPFTQTIRAEDQIPDLDRLITENPDEMAIALDWLLAGLIALTKRGRFMSEDELPE 370

Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIG-----ENLWEESHSLAKSYSEYREQELNYDRKR 732
                K   R+  DT   W  D  D G      N W +   + ++Y ++        R  
Sbjct: 371 EVRSHKVSLRKSNDTALEW-ADVVDAGQDPAYPNQWADKVVVYRAYRDFCADNG---RHP 426

Query: 733 ISTRTVTLNLKQ---------KGFIGGIKREKIEKEWKSKRIIK 767
           +        L++          G     +R   +      R+++
Sbjct: 427 VEANEFWKRLRRDLQVSKGIDIGAAENNRRAPKDSTGNRARLVR 470


>gi|109644386|ref|YP_659416.1| putative P4-specific DNA primase [Haloquadratum walsbyi DSM 16790]
 gi|109627353|emb|CAJ51112.1| putative P4-specific DNA primase [Haloquadratum walsbyi DSM 16790]
          Length = 649

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 105/322 (32%), Gaps = 32/322 (9%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM 483
                +   +G+L+L TG+    + E Y        +     +  +      + + E   
Sbjct: 228 EDPH-VCVDNGVLNLLTGELKPHSPEYYFVDRIPVRYKSNADTSVYERYFDDWTQRETDK 286

Query: 484 DYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG-----NQYVINAEAS 536
                 VG AL+     + ++F+ + G   +GKS     +K          Q V N + S
Sbjct: 287 RTLIEMVGHALVPDANERYKKFLMLTGDTNNGKSVFFRCVKALLNGPDGTEQNVSNVKLS 346

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
            +   R   +         + G+   +  E +     N A +K +TGGD +        +
Sbjct: 347 KLSTQRFANSS--------VYGNMANVAGEIDGKKIRNTASLKDITGGDSVEVEPKGTRS 398

Query: 597 YSESPASFTPFIVPNKHLFVRNPDD-AWWRRYIVIPFDKPIAN-------------RDAS 642
           + E   + T     N    + + D  A   R + +       +              ++ 
Sbjct: 399 FFE-TINATMMFAANDPPVIGDRDKQAIASRLVPVNLPYSFVDNPTENDPFEKQRRPESE 457

Query: 643 FAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
              +L T        +  ++GV+       DV +PE   +      +  D  + +  +C 
Sbjct: 458 LEDELLTDEALSGLLRLAVEGVQRLEDNSGDVSLPESPRERLRRYERTADPMRQFGAECL 517

Query: 702 DIGENLWEESHSLAKSYSEYRE 723
                 +     + + Y E+ E
Sbjct: 518 RNEAGEYVVKEHITEIYEEWTE 539


>gi|260102307|ref|ZP_05752544.1| hypothetical protein HMPREF0518_1038 [Lactobacillus helveticus DSM
           20075]
 gi|260083885|gb|EEW68005.1| hypothetical protein HMPREF0518_1038 [Lactobacillus helveticus DSM
           20075]
          Length = 508

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 80/525 (15%), Positives = 166/525 (31%), Gaps = 59/525 (11%)

Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
           KK S F +       +I +      +    N    +I          D        K+  
Sbjct: 16  KKDSNFKARPSWAQPIIDQYGNTRGWRAKPNLLAKTILDDNEMFSVVDDNG-----KSTS 70

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
           YI++    +               + ++      +++   +            N+  N  
Sbjct: 71  YIYNGDYWEPVDLAG---------IRNIVASYFYDDEYRHAY-----------NLLSNKV 110

Query: 402 AKSTAQSLEAGSIFSITSDLLDS----SSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
              TA  + A        D  D     +  ++       ++ T Q V+ + E Y T    
Sbjct: 111 VNDTANLVTALMDRRKYEDTFDQSDPLNLNYIPFDYYDYNIMTNQNVEHSPERYFTYKRD 170

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI-RGVGGSGKST 516
               +G+       L+      E++++     +G +     K  +F+    G GG GKS 
Sbjct: 171 YDLEDGDAECTNQWLLESLGGDEKLLELIKILIGASFYRSYKPLQFVIFITGEGGDGKSE 230

Query: 517 LMNLI-KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
            ++       G++   +     I++         N +L  L    +    + N +   ++
Sbjct: 231 FLDYWGSKLIGSRTNSHLSFDQIVK------TGTNFALAELYHKELNTYDDLNASYIDSS 284

Query: 576 --AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
                KQ+TGG+   A +             T     N    ++N   A  RR  +  + 
Sbjct: 285 MMGTAKQLTGGNPFDAEVKNKR-NLRFANYATMVFATNDMPEIQNLGFAEKRRIYIFKW- 342

Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKG---VKAYISKG----LDVDIPEVCLKAKEEE 686
             I N +  +     TK      K  +      K     G      +   E   +  ++ 
Sbjct: 343 HKIPNFEEKYGMLRITKERGAFAKQCIDAFSIAKLRRDTGESQQDVLPKCEAIEENWKQF 402

Query: 687 RQGTDTYQAWIDDCCDIGENLW------EESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
           +  +D    ++   C+             E H L  ++ ++   + N   K ++ R    
Sbjct: 403 QLDSDPVARFVASRCEADPEYTGDHGWIVEKHDLYTNFIDWA-DKHNLKVKGMTERKFNK 461

Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
            +K+ GF   ++    +  +K+ R+ + + L P     D +S I 
Sbjct: 462 KIKKLGFQEVVR----KVSYKATRVWQNMMLLPDGVENDTDSKIG 502


>gi|227544975|ref|ZP_03975024.1| DNA primase [Lactobacillus reuteri CF48-3A]
 gi|300909992|ref|ZP_07127452.1| DNA primase [Lactobacillus reuteri SD2112]
 gi|227185036|gb|EEI65107.1| DNA primase [Lactobacillus reuteri CF48-3A]
 gi|300892640|gb|EFK86000.1| DNA primase [Lactobacillus reuteri SD2112]
          Length = 522

 Score =  153 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 109/347 (31%), Gaps = 24/347 (6%)

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS------QEFLDLVSG 475
           ++ S   +   +GI D E  + +    +   T    T +V+ +          F   +  
Sbjct: 153 INKSINLVPVGNGIFDKENKKLLPFNPKYVFTSKVATKYVDNDIPEPTYNGWTFSKWIEE 212

Query: 476 YF-ESEEVMDYFTRCVGMALLGGNKAQR--FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
                E+      + +   +     +     +   G G +GKST   L+    G      
Sbjct: 213 LSNGGEDKATLLWQMIASVIQNRRTSNVLFCLIDNGEGRTGKSTFEALLMNLVGKNNYTA 272

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARL 591
            +  +            +  L +  G+ ++I  + + +    N + +K +   + +    
Sbjct: 273 LKLEEFD---------HSFLLAQAYGASLIIGDDNDPKGYIDNGSTLKSIVTNELVLINP 323

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651
                +S      T     N     ++  +  +RR+ +I F+    +       K E   
Sbjct: 324 KGQRPFSA-KFYCTIVQSMNGFPRFKDTSNGLYRRFRLIQFNHQYPDTPDGRKVKDEYVK 382

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
                +W LK  KA       +       +A  + +   D   +++++     E+     
Sbjct: 383 DQRLLQWILK--KALQVNIDTIINTRESQEAVNDLQLENDIVLSFVNEVVPNLESTRIPI 440

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
             L   + +Y +      +  ++  T T  +K      G   +K   
Sbjct: 441 ALLFALFRKYVDDN--NSKNGMTRATFTRRIKPLMERNGWNYKKSRP 485


>gi|307149770|ref|YP_003890813.1| Primase 2 [Cyanothece sp. PCC 7822]
 gi|306986570|gb|ADN18448.1| Primase 2 [Cyanothece sp. PCC 7822]
          Length = 302

 Score =  153 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 92/288 (31%), Gaps = 41/288 (14%)

Query: 18  FKLIPLRLGDKRPQRLGKWEEQLLSSEKI-----------------DKLP--ACGFGFVC 58
           + LIP+     +     +W+    + +++                  + P    G G + 
Sbjct: 23  WPLIPVNRN--KQPIGHQWQNHPFTRDQLITNLTGRGYLVVLNKYYQRYPIRPPGIGILL 80

Query: 59  GVGEQP-LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK----EGI 113
           G   +  L A D+D    +  +  ++    L  T     G+  +    F++      +  
Sbjct: 81  GHNSKEFLVALDVDGYSAQ--SFIQELLPRLPPTIAFTSGRPGRCQYLFKLPPGHSIKPF 138

Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
           K+          L+I   GQ  V          +Y W       ++ +  ++ E+ ++  
Sbjct: 139 KRITGPGEA---LEIRATGQQSVLPPSPHPVTGQYFWLGGCRPDEM-EVAIIPEQIIDL- 193

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
                  +    K  + I  +       + + T  E            +   +D WI + 
Sbjct: 194 -----AQSPKRTKKIQPITKAPLIREVRHDRATTIEAAKSALSLIHANFADDYDSWIRIG 248

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
           M++H     S    +   RWS+  + Y      YKW +F    + D  
Sbjct: 249 MSLHFI---SFSLLDDWDRWSQLSAKYQPGECYYKWASFKGSGVSDRT 293


>gi|327198106|ref|YP_004306636.1| DNA primase [Enterococcus phage EFRM31]
 gi|297179201|gb|ADI23902.1| DNA primase [Enterococcus phage EFRM31]
          Length = 528

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/475 (14%), Positives = 146/475 (30%), Gaps = 62/475 (13%)

Query: 324 FLYTADTKAWYKKDKNNVY--IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
            +Y  DTK  Y+  ++N+   +W    ++             +         +       
Sbjct: 96  VVYNHDTKI-YEVSEDNLEARLWQKLYNEFMMVYTPHYAENAKVANQFRNAVQ------- 147

Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441
             R   N      N+  N K                           +  ++G    +  
Sbjct: 148 --RMAKNALASGANLPFNDKM----------------------DPNKIAFKNGTYRFKED 183

Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501
                 KE Y T      +++        + +      EE      + +G         Q
Sbjct: 184 TLKPTVKEDYQTTRIEYDYIDNPKHNIVAEWIEYIL--EEDAKTLFQLIGRIFYRNQDPQ 241

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
             +   G G +GKS +M+ I+   G     +A  + +  N          +  +L G  +
Sbjct: 242 AMVFATGEGSNGKSHVMSFIEDLVGKSNTSHATLASLSGN------NDKFASSQLFGKMV 295

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
            I ++           +K ++G D M+A     N +             N      +   
Sbjct: 296 NIETDMPAQHIKQTGTLKTLSGNDVMSAEYKGINKF-TFTNYALMIFTTNNMPTFSDTSH 354

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLET------KYTLEAKKWFLKGVKAYI-----SKG 670
            + RR I +PF+K +   + + +  LE       +   E   + L+  +  +        
Sbjct: 355 GFLRRIITLPFNKTMGRDNPTDSMWLERSKNFTYEEKSEFISYCLQQYRNVLFGLNGETK 414

Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIGENLW--EESHSLAKSYSEYREQELN 727
                 +   K ++   QG DT   +I+ +  +   N+     +  L ++Y+    +E  
Sbjct: 415 GQFWTSDNANKLRDAFIQGNDTMANFIELNELEFTNNIDDVIPNTELLEAYNTMLREENL 474

Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKE--WKSKRIIKGLKLKPAFESVDD 780
            +   +S +     LK+K     I    I K    + +R    ++ K      D+
Sbjct: 475 ME---VSAKKFIPELKRKAQSENIILSVITKRVDGRVQRCTTNVRWKTNTSETDN 526


>gi|168052394|ref|XP_001778635.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669953|gb|EDQ56530.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 456

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 137/378 (36%), Gaps = 62/378 (16%)

Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
           Y  D  N  + S     +   ++     + +      E  +     +K   F  ++D RR
Sbjct: 124 YFFDTRNWALKSSKASMMKEILVGMYRFIADVCESYIETIKPA---TKIIDFIQSSDNRR 180

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
           + +   +                   +LL+S    +G + G+ D    +  +   + YIT
Sbjct: 181 KIMYTCAGM----------LYKEDFEELLNSRRDMIGMKGGVYDFTEDRFRRMEPDDYIT 230

Query: 454 KSTGTPFVEGEPS----QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
            ST  PFV  + +     E LDL+S  F                                
Sbjct: 231 LSTRIPFVPLDYNSEATNEVLDLLSKIFS--------------------------IWSVF 264

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           G +GK+ +++L++ AFG+  +    +  + +    ++  A P L  L    I ++ E +E
Sbjct: 265 GDNGKTVMVSLVERAFGDYAIKMLTSLLMGKR--VQSSAATPKLAMLKRRLIALVQEPDE 322

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
            D++N   +K++TG D +  R  Y       P +    ++ N+   +   D A W R  V
Sbjct: 323 GDKLNLGVMKELTGNDSLYIRELYEEGAV-IPQTAKFVLIANRIPQMSTFDKAVWSRVRV 381

Query: 630 IPFDKPIAN-------------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
           +PF     +             +D +F+ K+         +  ++  K Y++ GL  + P
Sbjct: 382 MPFISTFVDKIEPSHDPLTTHLKDINFSNKIPL-LAHVFMRLVIEEYKQYLTYGL--EEP 438

Query: 677 EVCLKAKEEERQGTDTYQ 694
                  E  R   D + 
Sbjct: 439 NEGKDCTETIRVSNDIFG 456


>gi|67925585|ref|ZP_00518913.1| hypothetical protein CwatDRAFT_0747 [Crocosphaera watsonii WH 8501]
 gi|67852574|gb|EAM48005.1| hypothetical protein CwatDRAFT_0747 [Crocosphaera watsonii WH 8501]
          Length = 288

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 84/277 (30%), Gaps = 32/277 (11%)

Query: 26  GDKRPQRLGKWEEQLLSSEK-IDKLPAC----------------GFGFVCGVGEQP-LYA 67
             K+      W+    +  + I                      G G +CG   +  L+A
Sbjct: 19  NGKKQPLGKNWQRNPYTPSQAIAIFQQGYVTLGGEKGSYRVKPLGIGILCGHNSKEFLFA 78

Query: 68  FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL- 126
            D D       +        L  T     G+  +    +++      K     +  G + 
Sbjct: 79  IDCDGISA---HRSLQRLGQLPPTVSFTSGRPGRCQYLYKLPSHKQIKSCKVTTAPGEVL 135

Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVK 186
           +I G     V          +Y W   P   +V   P       ++L ++    T    K
Sbjct: 136 EIRGSHHQSVLPPSPHPITGQYRWVNSPADVEVAIAP-------QWLVQWIDLQTYKPSK 188

Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKG 246
            K +  P     +  +   T+ E    L      +Y   +D WI V MA+      S   
Sbjct: 189 PKNNRKPFHQNVSKLDTPSTSEEAAVALLDLIPSYYADDYDSWIKVGMALKSI---SPVL 245

Query: 247 KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
            E   RWS+Q   +      YKW TF+   I +    
Sbjct: 246 LEAWDRWSRQSKKWKPGECAYKWRTFNGVGISERTLY 282


>gi|168187843|ref|ZP_02622478.1| CHC2 zinc finger domain protein [Clostridium botulinum C str.
           Eklund]
 gi|169294309|gb|EDS76442.1| CHC2 zinc finger domain protein [Clostridium botulinum C str.
           Eklund]
          Length = 731

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/504 (14%), Positives = 170/504 (33%), Gaps = 31/504 (6%)

Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA--DTKAWYKKDKNNVYIWSLTLDKITA 353
           K+ P    A              Y           + K  Y    +   I S+ L K+  
Sbjct: 243 KVFPTKDYAKEIGQDITDLFNLKYLDKEQFNNILDEIKPTYTYLTDKGKINSIKLAKLIL 302

Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
           +  + + + KE  F   +      K+                    +    T   + +  
Sbjct: 303 NCEDIIYTNKEGFFHYEDGY-YKLKDDDKNTLMKQVISNYLGDSILNN-NRTKNEVLSQL 360

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFV--EGEPSQEF 469
           +     + ++ ++++L  ++ +L +     + +  T ++         F   + + S  +
Sbjct: 361 MELTVIEEIEPNNQYLNFKNCLLKVTKEGIEVMDHTPDIITIHRFDYDFKRADYKNSNYY 420

Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
             L    +++ +++++  +  G  L+   +  +  + I G  G+GKST +  ++      
Sbjct: 421 KGLKYALYDNTDIVEFLQQFAGACLMPNARLMKAALIISGTKGTGKSTFIEPLQEMMKG- 479

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCM 587
                              +    +  L+  +  I+S  +    +    ++K++  G+ +
Sbjct: 480 --------LFETYDLKTLEEDKYIISYLINKK-CILSTDDGGKPLETCHRLKKLIYGENV 530

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI---ANRDASFA 644
                +  +      +    I  N      +P +A + R   + F + I      D  F 
Sbjct: 531 PTDRKFK-SNVSLNLNLAIVIGLNDIPKFNDPSNAIFDRLQFVEFKRKIRGTEKEDPHFI 589

Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI- 703
           +K++    LE   + L G+   +     +++P+     KE    G    ++W+  C ++ 
Sbjct: 590 EKIKKYEMLEVINFSLDGLAKLLRNDYKLNVPKEVQAFKENIIIGNSPLESWLYSCTEVC 649

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTR----TVTLNLKQKGFIGGIKREKIEKE 759
             + +     L  SY  Y   EL+ D K              L+ KGF    +  +   +
Sbjct: 650 SNDDFTTLKDLYNSYLGYCLNELSLDYKEAKNECGKQEFNKILQGKGFEFKKEIRRAGIK 709

Query: 760 WKSKRIIKGLKLKPAFESVDDNSN 783
           +KS  +  G+KL     +   N  
Sbjct: 710 YKS--VFFGIKLNETGRTYLINYE 731


>gi|227894341|ref|ZP_04012146.1| DNA primase [Lactobacillus ultunensis DSM 16047]
 gi|227863851|gb|EEJ71272.1| DNA primase [Lactobacillus ultunensis DSM 16047]
          Length = 508

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/521 (14%), Positives = 161/521 (30%), Gaps = 51/521 (9%)

Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
           KK S F +       +I +      +    N    +I          D        K+  
Sbjct: 16  KKDSNFKARPSWAQPIIDQYGNTRGWRAKPNLLAKTILDDNEMFSVVDDNG-----KSTS 70

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
           YI++    +        L  ++  V                   + +      +   N  
Sbjct: 71  YIYNGDYWEPVD-----LAGIRNIVASYF-----------YDDEYRHAYNLLSSKVVNDT 114

Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
           A      ++              +  ++       ++ T Q V+ + E Y T        
Sbjct: 115 ANLVTALMDRRKYEDTFDQSDPLNLNYIPFDYYDYNIMTNQNVEHSPERYFTYKRDYDLE 174

Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI-RGVGGSGKSTLMNL 520
           +G+       L+      E++++     +G +     K  +F+    G GG GKS  ++ 
Sbjct: 175 DGDAECTNQWLLESLGGDEKLLELIKILIGASFYRCYKPLQFVIFITGEGGDGKSEFLDY 234

Query: 521 I-KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA--AK 577
                 G++   +     I++         N +L  L    +    + N +   ++    
Sbjct: 235 WGSKLIGSRTNSHLSFDQIVK------TGTNFALAELYHKELNTYDDLNASYIDSSMMGT 288

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
            KQ+TGG+   A +             T     N    ++N   A  RR  +  +   I 
Sbjct: 289 AKQLTGGNPFDAEVKNKR-NLRFANYATMVFATNDMPEIQNLGFAEKRRIYIFKW-HKIP 346

Query: 638 NRDASFAQKLETKYTLEAKKWFLKG---VKAYISKG----LDVDIPEVCLKAKEEERQGT 690
           N +  +     TK      K  +      K     G      +   E   +  ++ +  +
Sbjct: 347 NFEEKYGMLRITKERGAFAKQCIDAFSIAKLRRDTGESQQDVLPKCEAIEENWKQFQLDS 406

Query: 691 DTYQAWIDDCCDIGENLW------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
           D    ++   C+             E H L  ++ ++   + N   K ++ R     +K+
Sbjct: 407 DPVARFVASRCEADPEYTGDHGWIVEKHDLYTNFIDWA-DKHNLKVKGMTERKFNKKIKK 465

Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
            GF   ++    +  +K+ R+ + + L P     D +S I 
Sbjct: 466 LGFQEVVR----KVSYKATRVWQNMMLLPDGVENDTDSKIG 502


>gi|167855067|ref|ZP_02477840.1| phage DNA primase-like protein [Haemophilus parasuis 29755]
 gi|167853805|gb|EDS25046.1| phage DNA primase-like protein [Haemophilus parasuis 29755]
          Length = 609

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 126/379 (33%), Gaps = 46/379 (12%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYF-ESEE 481
            +  +LG Q+G+L+ +TG+ +  ++E ++          +   +  F D +S     +++
Sbjct: 249 ENPDYLGFQNGVLNKKTGEFLPHSEENFLRTIDPFECRTDCTDTPYFDDWLSFVSNGNQQ 308

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
             D     + M L   ++   F+   G GG+GKS L  +     G       +       
Sbjct: 309 KHDAILAGLYMILTNRHEWHLFLEATGEGGAGKSILGEIATVLNGKSNTAILDLKAFESE 368

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
           +             L+G  +   S   +  +  A  +K MTGGD +  +L Y +   E  
Sbjct: 369 KGR---------AVLVGKTLAY-SPDQKPYKGTADDLKAMTGGDPIKVKLLYKDE-LEIK 417

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFL 660
            +    +  N  +   + +    RR ++I FD+ I       +  +             L
Sbjct: 418 VNAIFMMSTNYPITFTDRNGGITRRRVIILFDRKIPKEKKDVYFMEKVRAEVYGIVNKLL 477

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAW-----IDDCCD---- 702
                          PE      E+          ++  +    +     ID        
Sbjct: 478 A----------RFPNPEEARLILEDYQAQGEAVAVKREANHLVDFASAFKIDSNLKPLMM 527

Query: 703 IGENLWEESHS--LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
            G N  ++S    L K+Y  Y E      ++ ++ ++            G   + IE   
Sbjct: 528 WGSNRTQKSEDVALFKAYLFYCECLRL--QQPLNLQSFKQAFPDALRDSGQTEKLIEIGV 585

Query: 761 KSKRIIKGLKLKPAFESVD 779
           K+   +  +  K    ++ 
Sbjct: 586 KNGYTLLNIHWKDRLTTIQ 604


>gi|579075|emb|CAA53906.1| unnamed protein product [Streptomyces phage phiC31]
          Length = 202

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 15/201 (7%)

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
            +K++TG D +TAR      +     +F   +  N     ++ D+  WRR  +IPF +  
Sbjct: 1   MLKRVTGKDKVTARFL-RQEFFTFAPTFLIMLATNHKPKFKSQDEGLWRRVKLIPFVRYF 59

Query: 637 --ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
               RD    +KL    +     W ++G   + + GL    PE    A  E R  +D   
Sbjct: 60  APEERDYDLDRKL-RAESAGIVAWAVRGAVEWYANGLG--DPESISTATREYRATSDALA 116

Query: 695 AWIDDCCD-IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
            +     D   ++          SY ++ E E     +  S +     ++++G       
Sbjct: 117 GFFPGVLDAADDSAIVSGADAYNSYRDWCEAEGLKSTEVWSRKAFYGAMEERGIG----- 171

Query: 754 EKIEKEWKSKRIIKGLKLKPA 774
              +K+  +   + G+K   A
Sbjct: 172 ---KKKTNTGIALVGVKFADA 189


>gi|323183679|gb|EFZ69075.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Escherichia coli 1357]
          Length = 777

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 121/419 (28%), Gaps = 65/419 (15%)

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
           ++   P  W     R +    + K  S   +L+                R +G ++G+LD
Sbjct: 368 RHRTLPGMWPGWFQRLRAPFSSGKVASVVDTLKLIIPQQEAPS-----RRLIGFRNGVLD 422

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRC 489
            + G     +   ++       F            +  F   +        E  D     
Sbjct: 423 TQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGRAEKRDVILAA 482

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           + M L      Q F+ + G GGSGKS +  +     G     +A    +   R       
Sbjct: 483 LFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLESPR------- 535

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ + +  +     A  +K +TGGD ++    Y + YS          V
Sbjct: 536 --ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYSTHIP-AVILAV 591

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
            N  +   +      RR ++I F + IA   RD     K+         +  ++      
Sbjct: 592 NNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVRHLMQ------ 644

Query: 668 SKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL----------- 707
                   P +     + +         ++  D    +I    +                
Sbjct: 645 ----KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTSGMYMGNASII 699

Query: 708 -WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIKREKIEKEWK 761
                  L  +Y  Y E      R  +S +   L     LK+ G     +  K   +  
Sbjct: 700 PRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKRHTKQGIQTN 756


>gi|186684989|ref|YP_001868185.1| helicase superfamily protein [Nostoc punctiforme PCC 73102]
 gi|186467441|gb|ACC83242.1| Helicase superfamily 3 [Nostoc punctiforme PCC 73102]
          Length = 715

 Score =  151 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/493 (16%), Positives = 160/493 (32%), Gaps = 40/493 (8%)

Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357
           +          D         +           + W    K      +    KI     +
Sbjct: 228 MWDESRGKGMDDFIVANGKQEFDIEIAKAQ-RVEQWSNHFKEEEQHGNGN--KIKLPEHS 284

Query: 358 FLVSM-KEDVFDLSEEPEDNNKNSKSPRFWFN------TDYRRQNVEENSKAKSTAQSLE 410
            +  +    + +L  + + N        +W        +    + +++   +K  +    
Sbjct: 285 LMAEIIAPQLNNLKFDCQVNQWIQYQNGYWTTVSKEVISQKIIRKIKDTYPSKGFSSGYP 344

Query: 411 AGSIFSITSDLLDSS-----SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
            G I  + S+LL +      +  L  ++G+LDL+T + +  +   Y              
Sbjct: 345 EGVIKFLLSELLCNDFVEPSNHLLPFKNGVLDLKTNKLILHSPNHYFRNIIDREHDHKAT 404

Query: 466 SQ-EFLDLVSGYFESEEVMDYFTR-CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
              E    +   FE+     +         L G  K  RF  I G+GG+GKST M L   
Sbjct: 405 DWGEIEKWMDFVFENNPSQKHLLICWYAAVLRGMWKLHRFALIIGLGGTGKSTAMKLAIA 464

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G ++  +   + +  N+             +   R+V I++ +     N   +K +TG
Sbjct: 465 LIGKRFSHSLTITALNNNQ--------FQTANIYDKRLVCINDADRYRG-NLEILKNITG 515

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
           GD +     Y   +S            N        D    RR I+  FD+ + N D  F
Sbjct: 516 GDEINIEQKYERAFSAVYKGMVMITANNFV--FSAHDSGLDRRMILFKFDRQLPNIDTIF 573

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ--GTDTYQAWIDDCC 701
            +KL T        + L   +  I   L   + E   + + +      T++   W+++  
Sbjct: 574 LEKL-TAQISGFTNYLLSIPEPEIVHTLLYKVDESGTRKQNDVEALLQTNSLADWLNNSY 632

Query: 702 DIGENLWEESH----SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
               +          ++ + Y +Y         K  S +  +  + + G     K +   
Sbjct: 633 VYDPDNQVPIGVDKYNINQLYGDYCIYCHKTRSKPCSNKEFSPEIIRLGRGKLEKVK--- 689

Query: 758 KEWKSKRIIKGLK 770
              +S  +I+GL+
Sbjct: 690 --IRSGFMIRGLR 700


>gi|300724280|ref|YP_003713598.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
 gi|297630815|emb|CBJ91484.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
          Length = 810

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 86/693 (12%), Positives = 192/693 (27%), Gaps = 73/693 (10%)

Query: 127 DILGCGQYFVAYNIHPKT-----KKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
            I G  QY V   +H               T           +++    + L    Q+  
Sbjct: 140 SIRGESQYLVKKGLHCPNQRLLQDGSLLLVTQTLSDTNTGAQIITPNGEKRLVSGTQKKG 199

Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
             +   + +  P                +T      G           + V   V  +  
Sbjct: 200 SFIPVSEITGTPDTIIITEGYATA----LTVSQLHNGVVLAAIDESNLLNVAELVRKQWS 255

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT-SLFYHHGKLIPK 300
            S         W  QG       F         E++        T   +          +
Sbjct: 256 ESKIILAADNDWHAQGERDKNGKFKKNVGKIAAEKVAKAINGWVTLPPTGHKADWDDYRQ 315

Query: 301 GLLASRFSDAYNKAMFSIYKKG--HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
                     ++  ++ + +K           +   KK  NN+   + +  +  A ++  
Sbjct: 316 HHGIEAAKQVFSNGLYQVGEKKLMEAEAAVIHETKPKKANNNLAQMAAS--QRGALLVEH 373

Query: 359 LVSMK-----EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
              +      E V+  +    +   +++  R       +       +   +   +++   
Sbjct: 374 YQKIAVHAESEAVYHYNGTTWETVSDNELRRTMVAIFDQHDTPYSPNGINNAIYAMKLQI 433

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PS 466
                    +  S  +G  +G+ +L T +      E ++    G  F +          +
Sbjct: 434 PVIG-----EQRSDLIGFCNGVYELSTQKFTPHQPEHWLMNHNGIEFTQPAIGENLSDHA 488

Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
            +F   +S     +E  M+     + M L      Q FI + G GGSGKS    +     
Sbjct: 489 PDFYRWLSHAAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLA 548

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGG 584
           G     +     + + R            + +G  +  I+  ++   +     IK +TGG
Sbjct: 549 GEHNTASGNMRALDEARGR---------YQFVGKSL--ITLPDQVKYVGEGAGIKAITGG 597

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDAS 642
           D +     Y   +S            N+ +     +    RR ++ PF+ P+    +D  
Sbjct: 598 DLIEVDGKYEKQFSTII-KAVVLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQ 656

Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE--RQGTDTYQAW---- 696
             +K+         +  L     +  +     + +    + E    +  +D    +    
Sbjct: 657 LPEKISR-ELPVIIRHLL---TEFADQNKAKKLLQAQRDSNEALTVKSHSDPLYRFCGYL 712

Query: 697 --IDDCC-----DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
             ++D       +   +       L  +Y  + E       + ++      ++ +     
Sbjct: 713 VSVNDVTGMKMGNKNISPRAPRMYLYHAYLSFMEAHGF--ERPLTLTKFGESIPKIMLE- 769

Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782
                   KE++  R  KG           +  
Sbjct: 770 ------YRKEYRKVRTKKGYSYNVELSEEAEEW 796


>gi|188491844|ref|ZP_02999114.1| phage/plasmid primase C-terminal domain, P4 family [Escherichia
           coli 53638]
 gi|188487043|gb|EDU62146.1| phage/plasmid primase C-terminal domain, P4 family [Escherichia
           coli 53638]
          Length = 777

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 110/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            + EF   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPEFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|329115876|ref|ZP_08244593.1| nucleoside triphosphatase, D5 family [Streptococcus parauberis NCFD
           2020]
 gi|326906281|gb|EGE53195.1| nucleoside triphosphatase, D5 family [Streptococcus parauberis NCFD
           2020]
          Length = 426

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 136/402 (33%), Gaps = 36/402 (8%)

Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL----------DSSSRFLGEQDG 434
            +F    +   +++N   K     ++AG + ++  ++L          + +  +    + 
Sbjct: 1   MYFYNPDKGYYMQDNELIKDIMNIIKAGIVENVAKNVLYIIGRKSPIKELNPEYTALGNC 60

Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYFE-SEEVMDYFTR 488
           +   +T Q    + ++ +T+   T +       +         +   F+   E+ D   +
Sbjct: 61  VYSYKTKQFYDFSPDIPVTRKIETNYNPEATEPDIKGWSPTKWLKELFDNDNEMYDLVIQ 120

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
                +      +    + G GG+GK TL   I    G   V + + +++ ++R   +  
Sbjct: 121 MFKACITNEPLERI-FWLYGAGGTGKGTLQQFIINLVGLDNVASLKITELARSRFTTSI- 178

Query: 549 ANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
                  L+G  IVI  +  +N  I + +++  +T GD MT        YS      T  
Sbjct: 179 -------LLGKSIVIGDDIQQNAMIKDTSELFSLTTGDIMTIEEKGLKPYS-LRLQMTVI 230

Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
              N    +    DA  RR ++IPF     N+     +K          ++ LK     I
Sbjct: 231 QSSNGLPIMDGDKDAISRRLMIIPFTSKYKNKPNKAIKKYYINNK-NVLEYILKLA---I 286

Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQEL 726
                   P    +   +     +   A+I+D   D   + +  +  +   +  Y E   
Sbjct: 287 ETPTKEIYPSSSKELVHDYLLEINPVLAFIEDFFTDSLNSEFIPNSFVWHVWKNYLEYNN 346

Query: 727 NYDRKRIST--RTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
               +  +   R +  NL    +I   +R   +         
Sbjct: 347 LRSFRTETALHREIKTNLPD--YIKAGQRTIPKGREHHTNFY 386


>gi|260857931|ref|YP_003231822.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
 gi|257756580|dbj|BAI28082.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
 gi|323155327|gb|EFZ41510.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Escherichia coli EPECa14]
          Length = 777

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 108/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
              +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RHLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|290475667|ref|YP_003468556.1| putative phage primase [Xenorhabdus bovienii SS-2004]
 gi|289174989|emb|CBJ81792.1| putative phage primase [Xenorhabdus bovienii SS-2004]
          Length = 814

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 86/693 (12%), Positives = 192/693 (27%), Gaps = 73/693 (10%)

Query: 127 DILGCGQYFVAYNIHPKT-----KKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
            I G  QY V   +H               T           +++    + L    Q+  
Sbjct: 144 SIRGESQYLVKKGLHCPNQRLLQDGSLLLVTQTLSDTNTGAQIITPNGEKRLVSGTQKKG 203

Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
             +   + +  P                +T      G           + V   V  +  
Sbjct: 204 SFIPVSEITGTPDTIIITEGYATA----LTVSQLHNGVVLAAIDESNLLNVAELVRKQWS 259

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT-SLFYHHGKLIPK 300
            S         W  QG       F         E++        T   +          +
Sbjct: 260 ESKIILAADNDWHAQGERDKNGKFKKNVGKIAAEKVAKAINGWVTLPPTGHKADWDDYRQ 319

Query: 301 GLLASRFSDAYNKAMFSIYKKG--HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
                     ++  ++ + +K           +   KK  NN+   + +  +  A ++  
Sbjct: 320 HHGIEAAKQVFSNGLYQVGEKKLMEAEAAVIHETKPKKANNNLAQMAAS--QRGALLVEH 377

Query: 359 LVSMK-----EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
              +      E V+  +    +   +++  R       +       +   +   +++   
Sbjct: 378 YQKIAVHAESEAVYHYNGPTWETVSDNELRRAMVAIFDQHDTPYSPNGINNAIYAMKLQI 437

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PS 466
                    +  S  +G  +G+ +L T +      E ++    G  F +          +
Sbjct: 438 PVIG-----EQRSDLIGFCNGVYELSTQKFTPHQPEHWLMNHNGIEFTQPAIGENLSDHA 492

Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
            +F   +S     +E  M+     + M L      Q FI + G GGSGKS    +     
Sbjct: 493 PDFYRWLSHAAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLA 552

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGG 584
           G     +     + + R            + +G  +  I+  ++   +     IK +TGG
Sbjct: 553 GEHNTASGNMRALDEARGR---------YQFVGKSL--ITLPDQVKYVGEGAGIKAITGG 601

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDAS 642
           D +     Y   +S            N+ +     +    RR ++ PF+ P+    +D  
Sbjct: 602 DLIEVDGKYEKQFSTII-KAVVLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQ 660

Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE--RQGTDTYQAW---- 696
             +K+         +  L     +  +     + +    + E    +  +D    +    
Sbjct: 661 LPEKISR-ELPVIIRHLL---TEFADQNKAKKLLQAQRDSNEALTVKSHSDPLYRFCGYL 716

Query: 697 --IDDCC-----DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
             ++D       +   +       L  +Y  + E       + ++      ++ +     
Sbjct: 717 VSVNDVTGMKMGNKNISPRAPRLYLYHAYLSFMEAHGF--ERPLTLTKFGESIPKIMLE- 773

Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782
                   KE++  R  KG           +  
Sbjct: 774 ------YRKEYRKVRTKKGYSYNVELSEEAEEW 800


>gi|157325399|ref|YP_001468818.1| gp34 [Listeria phage P35]
 gi|66733404|gb|AAY53219.1| gp34 [Listeria phage P35]
          Length = 634

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 68/518 (13%), Positives = 158/518 (30%), Gaps = 37/518 (7%)

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328
            D F   +  +         + F      + K ++ +       K +           + 
Sbjct: 131 PDVFKTGKFENAVSMGEGGRNNFMFRHLAMAKSVVTADDVAKIAKFINEYLFDEPLPQSE 190

Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388
             K+  +  ++    +S  ++K  A  +     + +   D     EDN            
Sbjct: 191 LEKSVMQSLESETL-FSGLMEKRIAEQVVRDYRIVK-YRDSLYYFEDNQYKQDESGHILQ 248

Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ------ 442
             Y+         +    + +     F  +  +       +   +G++D    +      
Sbjct: 249 IAYKECGDVPTKVSDEVYRHISRMVEFVDSETVFP-----IRVANGVIDTRKAEAYGMDS 303

Query: 443 -KVKPTKELYITKSTGTPFVEGEP-SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNK 499
             +    + +       P+       QE  D ++      E+        +G  LL   +
Sbjct: 304 SFIPIDDKKFSPYYINIPYNAEAEAVQEVDDYLNNLTGGDEDYKKVLLEALGSTLLTDPE 363

Query: 500 AQ----RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
            +    +    RG GG+GK TL+ +I    G + V  +    +              L  
Sbjct: 364 QKRLLAKIFIFRGNGGNGKGTLLTIISEILGRESVGTSSLEQLTNE---------SYLYS 414

Query: 556 LMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
           L G    +  +   +   N     IK ++  D +  R      +S    + T  +  N  
Sbjct: 415 LNGKLANLCDDVENSAIDNKKMKIIKNISTCDRIDLRKMREQAFSA-TLTCTLIMTSNHT 473

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA-KKWFLKGVKAYISKGLD 672
           L       +W RR + +P    +  +D  F  KL T   L+      ++G+   + +   
Sbjct: 474 LKSFEKGKSWKRRVMWMPMFSEVVKKDPRFITKLTTPKALQYWLALMVEGLNRLLDQKCT 533

Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
           +   +V     +      +    +     +  E   +    + + Y  + + E   D+  
Sbjct: 534 LTPSKVLEDYNKAYHADNNNALDFFATITE-NEIFDQPVKDVYEKYCAWFKDEHESDQDP 592

Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
             + T + ++ +      ++++ +    K+      LK
Sbjct: 593 FKSTTFSRSVME---FYPVEKKNVRIGQKTPYCYVALK 627


>gi|307149891|ref|YP_003890934.1| Primase 2 [Cyanothece sp. PCC 7822]
 gi|306986691|gb|ADN18569.1| Primase 2 [Cyanothece sp. PCC 7822]
          Length = 302

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 91/288 (31%), Gaps = 41/288 (14%)

Query: 18  FKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK-----------------LP--ACGFGFVC 58
           + LIP+     +     +W+   ++ + + K                  P    G G + 
Sbjct: 23  WPLIPVNRN--KQPIGHQWQNHPVTRDNLIKNFNQRGYIIVLNKYHQPYPIRPPGVGILL 80

Query: 59  GVGEQP-LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK----EGI 113
           G   +  L A D+D    +     ++    L  T     G+  +    F++      +  
Sbjct: 81  GQNSKEFLIALDVDGYSARAY--LQELIPHLPRTVAFTSGRPGRCQYLFKLPPGHSIKPF 138

Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
           K+          L+I   GQ  V          +Y W       ++ +  ++ E+ ++  
Sbjct: 139 KRITGPGEA---LEIRATGQQSVLPPSPHPVTGQYFWLGGCRPDEI-EVAIIPEQIIDL- 193

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
                  +    K  + I  +       + + T  E            +   +D WI + 
Sbjct: 194 -----AQSPKRTKKIQPITKAPLIREVRHDRATTIEAAKSALSLIHPNFADDYDSWIRIG 248

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
           M++H     S    +   RWS+  + Y      YKW +F    + D  
Sbjct: 249 MSLHFI---SFSLLDDWDRWSQLSAKYQPGECYYKWASFKGSGVSDRT 293


>gi|326792799|ref|YP_004310620.1| Bifunctional DNA primase/polymerase [Clostridium lentocellum DSM
           5427]
 gi|326543563|gb|ADZ85422.1| Bifunctional DNA primase/polymerase [Clostridium lentocellum DSM
           5427]
          Length = 416

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 121/433 (27%), Gaps = 66/433 (15%)

Query: 27  DKRPQRLGKWEEQLLSSEK-----IDKLPACGFGFVCGVGEQPLYAFDIDSK--DEKTAN 79
             +      W+E   +++        K P    G   G     L   D+D+K   +++  
Sbjct: 42  KGKHPIFNGWQELATTNQDTITKWWSKYPDANIGIPTGERSGWLV-LDVDTKYQGDESLE 100

Query: 80  TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
             +  +E L  T     G   +  + F+  K          S +  LD    G   VA  
Sbjct: 101 LLQMLYEDLPPTVTALTGSGGR-HLIFKYPKG--VHIPNKVSFKQGLDTRSNGGLIVATP 157

Query: 140 IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199
               +   Y+W      F   +     E  +E + +  Q     +V        +  +  
Sbjct: 158 SLHVSGNTYSWLEGHSPFD-SEPVEAPEWLLEVMCEGDQIQKREVVYQALETSTATVFEG 216

Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259
           + N   T        S  G     G  +  I V +   +E       +    R       
Sbjct: 217 SRNNHLT--------SLAGTLRRKGMSESGIIVALMAENEANCEPPLEVEEVR------- 261

Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIY 319
                       ++  +                               +D+ N   F   
Sbjct: 262 ----TIARSIGKYEPNKANLKP----------------------YYNRTDSGNAERFRDL 295

Query: 320 KKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379
                 Y      W+        IW+    +  +S         + V  + EE +    +
Sbjct: 296 YGKDIRYCHILDKWF--------IWNGQYWEADSSG-RITELAIKTVRTMLEEAQQIQDD 346

Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439
                   +        E  S+ K+           +IT+D LD     +  Q+GI+DL+
Sbjct: 347 IARRELVKHALK----SEGFSRIKAMISLASDLQELTITTDELDKDIWKINCQNGIIDLK 402

Query: 440 TGQKVKPTKELYI 452
           TG+ +   ++ + 
Sbjct: 403 TGELLSHDRKYFY 415


>gi|240119370|dbj|BAH79233.1| putative P4-specific DNA primase [Escherichia coli O157:H7]
          Length = 777

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%)

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479
            +G ++G+LD + G     +   ++       F            +  F   +       
Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    + 
Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEHNATSATIETLE 532

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
             R             L G  ++ + +  +     A  +K +TGGD ++    Y + YS 
Sbjct: 533 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 582

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
                    V N  +   +      RR ++I F + IA   RD     K+         +
Sbjct: 583 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 640

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707
             ++              P +     + +         ++  D    +I    +      
Sbjct: 641 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 689

Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752
                            L  +Y  Y E      R  +S +   L     LK+ G     +
Sbjct: 690 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 747

Query: 753 REKIEKEWK 761
             K   +  
Sbjct: 748 HTKQGIQTN 756


>gi|251777906|ref|ZP_04820826.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082221|gb|EES48111.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 643

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/506 (15%), Positives = 166/506 (32%), Gaps = 33/506 (6%)

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
           + +          K         + NK  F  +  G+     ++      DKN    W+ 
Sbjct: 95  YAAFINKIKGNKDKLEDIPLIKYSDNKQAFISFINGNLRALINS-----VDKNKFAYWNS 149

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
              ++      ++V     +   + E   N    +   +        +   + +  +   
Sbjct: 150 KAWELLTEEETYMV-YGNFITQCNLELRQNINVLEKQEYSEICKRMNKWDTDRNARECLN 208

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
           +            + +D +   +   DG I++L TG+     +   I  ++    ++   
Sbjct: 209 KVKRDKQHIINMKNYID-NRNLICSHDGKIINLATGEIKAANRNDLILFTSKYNLMDKGK 267

Query: 466 SQEFLDLVSGYFES---EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
           + EF+      +     ++ + +    +   LL     Q  I + G   +GKST  N++K
Sbjct: 268 AVEFMQEKMKIYLDIIGKDRLLFILDLISYKLLDR-SLQSAIFMIGTRATGKSTFKNIMK 326

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
             F N+ V+         ++  +    +  L  L   RI   SE  +   I++A+ K + 
Sbjct: 327 DLFKNENVVIPYNYLTTSHKGNDDKSRDDILASLDNKRIAFCSEGEDEQTISSARFKTLL 386

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP--IANRD 640
                +AR         +          N        D A  RR + + FDKP  I  R+
Sbjct: 387 SNSEESARKTGKELMEVNLKGLDIIFDTNSIPSFSTMDGAISRRLMFVKFDKPISIEKRN 446

Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
           A + ++           +F+   +A    G  ++IP+        +    D+   +  + 
Sbjct: 447 ADYYKEEIAPNFDYVFSYFV--YRAIAMIGKKLEIPQCIKDDTSLKLSEVDSLLNFSREA 504

Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
               +  + +   L   Y  + E E                  QK  I  + ++  +   
Sbjct: 505 IAPFDGGFVKYSELENEYIRFCENEG-----------------QKSVIPEVLQDAKKYSK 547

Query: 761 KSKRIIKGLKLKPAFESVDDNSNIID 786
           +   II  LK K  + ++   + + D
Sbjct: 548 RCNYIINLLKEKDGYYNIYKGNRVSD 573


>gi|324115992|gb|EGC09918.1| poxvirus D5 protein [Escherichia coli E1167]
          Length = 777

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|323182012|gb|EFZ67423.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Escherichia coli 1357]
          Length = 777

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|320193611|gb|EFW68246.1| DNA primase, phage-associated [Escherichia coli WV_060327]
          Length = 777

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 108/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G         ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHRPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|315296958|gb|EFU56238.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 16-3]
          Length = 687

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 321 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 380

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 381 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 440

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 441 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 490

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 491 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 548

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 549 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 597

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 598 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 655

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 656 KRHTKQGIQTN 666


>gi|300905045|ref|ZP_07122855.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 84-1]
 gi|301305722|ref|ZP_07211809.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 124-1]
 gi|300403032|gb|EFJ86570.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 84-1]
 gi|300838976|gb|EFK66736.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 124-1]
 gi|315252798|gb|EFU32766.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 85-1]
          Length = 777

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|218547850|ref|YP_002381641.1| phage DNA primase [Escherichia fergusonii ATCC 35469]
 gi|218355391|emb|CAQ88000.1| phage DNA primase [Escherichia fergusonii ATCC 35469]
          Length = 777

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|170679915|ref|YP_001745974.1| D5 family nucleoside triphosphatase [Escherichia coli SMS-3-5]
 gi|170517633|gb|ACB15811.1| nucleoside triphosphatase, D5 family [Escherichia coli SMS-3-5]
          Length = 777

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|9627512|ref|NP_042036.1| DNA primase [Enterobacteria phage P4]
 gi|130905|sp|P10277|PRIM_BPP4 RecName: Full=Putative P4-specific DNA primase
 gi|75895|pir||RPBPP4 DNA primase - satellite phage P4
 gi|15152|emb|CAA29111.1| unnamed protein product [Enterobacteria phage P4]
 gi|15158|emb|CAA35898.1| unnamed protein product [Enterobacteria phage P4]
          Length = 777

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|168041210|ref|XP_001773085.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675632|gb|EDQ62125.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 378

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 118/270 (43%), Gaps = 18/270 (6%)

Query: 357 NFLVSMKEDVFDLSEE-PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
             L  M + + D+ E   E     +K   F  ++D RR+ +   ++              
Sbjct: 120 EILTGMYKFIADICESYMETIELATKIIDFIQSSDNRRKMMYICARM----------LYK 169

Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLD 471
               +LLDS    +G + G+ +    +  +   + YIT ST  PFV  + +     E LD
Sbjct: 170 EGFEELLDSRRDVIGMKGGVYNFTEDRFRRMELDDYITLSTKIPFVPLDYNSEATNEVLD 229

Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           L++  F ++ +  YF R +   L G N  + F    G G + K+ +++L++ AFG+  + 
Sbjct: 230 LLAKVFLNKNIRRYFMRFISSCLEGRNANKIFSIWSGSGDNRKTVMVSLVERAFGDYAI- 288

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
               S +M  R  ++  A P L  L G  I ++ E +E D++N   +K++TG + +  R 
Sbjct: 289 KMPTSLLMGKR-VQSSTATPQLAMLKGRLITLVQEPDEGDKLNLGVMKELTGNNSLYVRG 347

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
            Y       P      ++ N+ L +   D 
Sbjct: 348 LYEEGTI-IPQKAKFILIANRILQMSIFDK 376


>gi|253689633|ref|YP_003018823.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756211|gb|ACT14287.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 775

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/445 (15%), Positives = 133/445 (29%), Gaps = 70/445 (15%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           E  F           +    R       + Q     +   S   +L+             
Sbjct: 354 ETFFQYQNGAWKVLPHRLLSRDIAALFQKIQAPFTAAGIDSVINTLKLIVPMQEA----- 408

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGY 476
           S  R +G ++G+ D  +G+     +E ++       +          + +  F   ++  
Sbjct: 409 SQRRLIGFRNGVFDTASGEFKPHRREHWLHTVNDVDYTPFKAGENLADNAPHFWRWLTRA 468

Query: 477 FES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
             +  +  +     + M L      Q F+ + G GGSGKS L  +     G+     A  
Sbjct: 469 AGNHPDKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEITTMLAGDDNTTAATI 528

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
           + I  +R   +         ++G  ++++ +  +     A  IK +TGGD +     Y +
Sbjct: 529 NTIESSRERSS---------IIGFSLIVLPDQEKWSGDGAG-IKAITGGDAVMVDPKYRD 578

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653
            YS          V N  +   +      RR ++I F + I    RD    +K+      
Sbjct: 579 AYSTRIP-AVILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKI-RAELA 636

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAWIDDCC--- 701
              +  +K            + P       +         E ++  D    +    C   
Sbjct: 637 VIVRHLMK----------RFEEPNDARTLLQAQQHSAEALEIKRQADPLVDF----CGYL 682

Query: 702 ------------DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
                       +           L  +Y  + E   +  +K IS       L     + 
Sbjct: 683 LAHSDTTGLYMGNANITPRNPRKYLYHAYLSFMESHGH--QKPISLTAFGKVLPN--MMS 738

Query: 750 GIKREKIEKEWKSKRIIKGLKLKPA 774
              +  ++   K   I   L+LK  
Sbjct: 739 EYGQSYLKGRTKQG-IQTNLELKDE 762


>gi|325109860|ref|YP_004270928.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM
           5305]
 gi|324970128|gb|ADY60906.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM
           5305]
          Length = 660

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 79/275 (28%), Gaps = 31/275 (11%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65
           A Q   NGF++ P     K P      ++     E+I++     P    G         L
Sbjct: 20  AVQYAENGFRVFPCVPNGKSPATKNGCKDATDDVEQIEQWWTQTPDANIGIAT----DGL 75

Query: 66  YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125
              DID  D     T  D    L    +    +  + L   + ++E              
Sbjct: 76  VVVDIDGAD-HPWLTDPDRMAELAKNAMAVTPRGGRHLYFAQGDEEIGCSVSKLADK--- 131

Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185
           +DI   G Y VA        KEY W+         +   + E                  
Sbjct: 132 VDIRANGGYVVAPPSTV-NGKEYRWSNSFELGGRSELSAVPESI--------------SG 176

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAF-LSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244
             ++     +     +       +  A  +          + D+W+ V MA+H     S 
Sbjct: 177 PLRRPKNDQQQPVQQDGIFSIAEKAEALTILSRLPLECCDNRDDWLRVGMALHSV---SP 233

Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279
           +       WSK  + +        W  FD E  G 
Sbjct: 234 QLLPDWVIWSKLSAKFQPGVCERSWRGFDRERAGG 268


>gi|323944124|gb|EGB40204.1| poxvirus D5 protein [Escherichia coli H120]
          Length = 780

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLENHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|323181592|gb|EFZ67012.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Escherichia coli 1357]
          Length = 680

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 314 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 373

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 374 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 433

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 434 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 483

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 484 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 541

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 542 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 590

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 591 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 648

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 649 KRHTKQGIQTN 659


>gi|320197261|gb|EFW71877.1| DNA primase, phage-associated [Escherichia coli WV_060327]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|331648374|ref|ZP_08349462.1| putative P4-specific DNA primase [Escherichia coli M605]
 gi|331042121|gb|EGI14263.1| putative P4-specific DNA primase [Escherichia coli M605]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|301047471|ref|ZP_07194548.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 185-1]
 gi|300300586|gb|EFJ56971.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 185-1]
          Length = 680

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 314 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLENHAPAFWRWLDRAAG 373

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 374 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 433

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 434 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 483

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 484 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 541

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 542 VRHLMQ----------KFSDPMLARSLLQSQQNSDEARNIKRDADPTFDFIG-YLETLPQ 590

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 591 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 648

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 649 KRHTKQGIQTN 659


>gi|294492921|gb|ADE91677.1| prophage LambdaSa04, DNA primase, P4 family [Escherichia coli
           IHE3034]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|254038870|ref|ZP_04872922.1| nucleoside triphosphatase [Escherichia sp. 1_1_43]
 gi|226838835|gb|EEH70862.1| nucleoside triphosphatase [Escherichia sp. 1_1_43]
          Length = 780

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|195957614|gb|ACG59723.1| nucleoside triphosphatase [Escherichia coli]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|168785548|ref|ZP_02810555.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
           EC869]
 gi|189374573|gb|EDU92989.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
           EC869]
 gi|195957495|gb|ACG59606.1| D5 family nucleoside triphosphatase [Escherichia coli O157:H7]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|170018102|ref|YP_001723056.1| P4 family phage/plasmid primase [Escherichia coli ATCC 8739]
 gi|169753030|gb|ACA75729.1| phage/plasmid primase, P4 family [Escherichia coli ATCC 8739]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|82546473|ref|YP_410420.1| DNA primase [Shigella boydii Sb227]
 gi|81247884|gb|ABB68592.1| putative DNA primase [Shigella boydii Sb227]
 gi|320184529|gb|EFW59331.1| DNA primase , phage-associated [Shigella flexneri CDC 796-83]
 gi|332086985|gb|EGI92119.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Shigella boydii 3594-74]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|29143025|ref|NP_806367.1| hypothetical protein t2656 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|29138658|gb|AAO70227.1| hypothetical protein t2656 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|191170424|ref|ZP_03031977.1| nucleoside triphosphatase, D5 family [Escherichia coli F11]
 gi|300988773|ref|ZP_07178815.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 200-1]
 gi|190909232|gb|EDV68818.1| nucleoside triphosphatase, D5 family [Escherichia coli F11]
 gi|300305841|gb|EFJ60361.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 200-1]
 gi|324012684|gb|EGB81903.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 60-1]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|256021327|ref|ZP_05435192.1| P4 family phage/plasmid primase [Shigella sp. D9]
 gi|332282561|ref|ZP_08394974.1| DNA primase [Shigella sp. D9]
 gi|332104913|gb|EGJ08259.1| DNA primase [Shigella sp. D9]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%)

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479
            +G ++G+LD + G     +   ++       F            +  F   +       
Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAGGR 472

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    + 
Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
             R             L G  ++ + +  +     A  +K +TGGD ++    Y + YS 
Sbjct: 533 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 582

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
                    V N  +   +      RR ++I F + IA   RD     K+         +
Sbjct: 583 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 640

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707
             ++              P +     + +         ++  D    +I    +      
Sbjct: 641 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 689

Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752
                            L  +Y  Y E      R  +S +   L     LK+ G     +
Sbjct: 690 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 747

Query: 753 REKIEKEWK 761
             K   +  
Sbjct: 748 HTKQGIQTN 756


>gi|193070938|ref|ZP_03051869.1| nucleoside triphosphatase, D5 family [Escherichia coli E110019]
 gi|192955792|gb|EDV86264.1| nucleoside triphosphatase, D5 family [Escherichia coli E110019]
          Length = 783

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%)

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479
            +G ++G+LD + G     +   ++       F            +  F   +       
Sbjct: 419 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAGGR 478

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    + 
Sbjct: 479 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 538

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
             R             L G  ++ + +  +     A  +K +TGGD ++    Y + YS 
Sbjct: 539 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 588

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
                    V N  +   +      RR ++I F + IA   RD     K+         +
Sbjct: 589 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 646

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707
             ++              P +     + +         ++  D    +I    +      
Sbjct: 647 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 695

Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752
                            L  +Y  Y E      R  +S +   L     LK+ G     +
Sbjct: 696 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 753

Query: 753 REKIEKEWK 761
             K   +  
Sbjct: 754 HTKQGIQTN 762


>gi|324020383|gb|EGB89602.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 117-3]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 110/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD ++G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQSGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|323184660|gb|EFZ70032.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Escherichia coli 1357]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 110/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD ++G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQSGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|315615291|gb|EFU95927.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Escherichia coli 3431]
          Length = 777

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 110/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD ++G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQSGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|293415902|ref|ZP_06658542.1| DNA primase [Escherichia coli B185]
 gi|291432091|gb|EFF05073.1| DNA primase [Escherichia coli B185]
          Length = 777

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%)

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479
            +G ++G+LD + G     +   ++       F            +  F   +       
Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    + 
Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
             R             L G  ++ + +  +     A  +K +TGGD ++    Y + YS 
Sbjct: 533 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 582

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
                    V N  +   +      RR ++I F + IA   RD     K+         +
Sbjct: 583 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 640

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707
             ++              P +     + +         ++  D    +I    +      
Sbjct: 641 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 689

Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752
                            L  +Y  Y E      R  +S +   L     LK+ G     +
Sbjct: 690 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 747

Query: 753 REKIEKEWK 761
             K   +  
Sbjct: 748 HTKQGIQTN 756


>gi|168784927|ref|ZP_02809934.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
           EC869]
 gi|189374731|gb|EDU93147.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
           EC869]
          Length = 777

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%)

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479
            +G ++G+LD + G     +   ++       F            +  F   +       
Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    + 
Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
             R             L G  ++ + +  +     A  +K +TGGD ++    Y + YS 
Sbjct: 533 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 582

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
                    V N  +   +      RR ++I F + IA   RD     K+         +
Sbjct: 583 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 640

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707
             ++              P +     + +         ++  D    +I    +      
Sbjct: 641 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 689

Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752
                            L  +Y  Y E      R  +S +   L     LK+ G     +
Sbjct: 690 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 747

Query: 753 REKIEKEWK 761
             K   +  
Sbjct: 748 HTKQGIQTN 756


>gi|170019093|ref|YP_001724047.1| P4 family phage/plasmid primase [Escherichia coli ATCC 8739]
 gi|169754021|gb|ACA76720.1| phage/plasmid primase, P4 family [Escherichia coli ATCC 8739]
          Length = 777

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%)

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479
            +G ++G+LD + G     +   ++       F            +  F   +       
Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
            E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    + 
Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
             R             L G  ++ + +  +     A  +K +TGGD ++    Y + YS 
Sbjct: 533 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 582

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
                    V N  +   +      RR ++I F + IA   RD     K+         +
Sbjct: 583 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 640

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707
             ++              P +     + +         ++  D    +I    +      
Sbjct: 641 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 689

Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752
                            L  +Y  Y E      R  +S +   L     LK+ G     +
Sbjct: 690 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 747

Query: 753 REKIEKEWK 761
             K   +  
Sbjct: 748 HTKQGIQTN 756


>gi|288932397|ref|YP_003436457.1| Bifunctional DNA primase/polymerase [Ferroglobus placidus DSM
           10642]
 gi|288894645|gb|ADC66182.1| Bifunctional DNA primase/polymerase [Ferroglobus placidus DSM
           10642]
          Length = 882

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 91/705 (12%), Positives = 201/705 (28%), Gaps = 95/705 (13%)

Query: 10  AKQAIHNGFKLIPL------RLGDKRPQ--RLGKWEEQLLSSEKIDKLPAC--------- 52
           A++ +  GF +IP+          ++P      K++    + E++               
Sbjct: 8   AEEYLREGFSVIPVALIRLPDGRSRKPALVDWKKYQLSPPTLEEVRSWFENPEQFEAIRK 67

Query: 53  ----GFGFVCGVGEQPLYAFDIDSKD------EKTANTFKDTFEILHGTPIVRIGQKPKI 102
               G   V G     L   D D+++       +   +  + +E    T +V  G+    
Sbjct: 68  GNKIGIAIVTGSVSGNLAVIDFDNREVLSDFLAELYESDSNLYEKFINTWVVETGK--GF 125

Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT 162
               R+     K        +  +DI   G + VA      + K+Y +   P        
Sbjct: 126 HYYLRVKDPDPKLFHNRIGIREGIDIRAEGGFVVAPPSPHPSGKQYRFVNKPE-----KI 180

Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222
             LS E+   L +  +       +     I +K    + + +  +      +    +  Y
Sbjct: 181 AELSWEEYLTLLRILERNETLPEEGLTEEISAKDSLTSKDERELSESEILEIVNLLKPIY 240

Query: 223 NGSHDE--------WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENF-NYKWDTFD 273
                         W+      +   +                   +E +   Y  D   
Sbjct: 241 RPGFRNYIILFLTGWLRKAGISYKSAKKIVDLL---------SEKDEERDLRIYVLDRTY 291

Query: 274 FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM--FSIYKKGHFLYTADTK 331
                  +++     +      + +     +        + +   S ++   F     ++
Sbjct: 292 GLRGNPPSEEELKGKTGLQEIAEKLFGEEKSLELIRRLEEKLGRSSPFRDSIFSLIDFSR 351

Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
             Y        I +   +      + +   + E         ED     +     F+   
Sbjct: 352 KLYYVANPRKGIIARAYEDSKNGGIVYKELIAECCPVRVVVYEDPLGGVRKFEIEFDGLL 411

Query: 392 RRQNVEENSKAKSTAQSLEAGS-IFSITSDLLDSSSRFLGE-QDGILDLETGQKVKP--- 446
           ++     + +  ++    EA      +  D L S    +   ++G  ++    +      
Sbjct: 412 KKTIGPADLETIASRLKAEAVVKHKRLVDDALSS--LIIAFIRNGKAEIRRELEKPGFYY 469

Query: 447 -TKELYITKSTGTPFVEGE----------PSQEFLDLVSGYFESEEVMDY-FTRCVGMA- 493
              E+   K     F + +            +E+   ++  F    V+ +        A 
Sbjct: 470 IDGEIKAVKWNAEKFTKEDLRKALLLLRELREEWYKHLAERF--TTVIKWGIIAPFSYAI 527

Query: 494 --LLGGNKAQR-FIHIRGVGGSGKSTLMNLIKYA--FGNQYVINAEASDIMQNRPPEAGK 548
             + G       ++ + G   +GKSTL  +I+       +    +    + +     +  
Sbjct: 528 KQIRGTYGIHFPWLLLHGSASTGKSTLGKIIRAIWNLPPEEKGGSHIDTVPRFGKVVSES 587

Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
             P L       I  ++E    D I    +K     + + AR  Y         + +P I
Sbjct: 588 TFPVL-------INEVAEVLAKDSIRE-VLKS--SIETLFARGRYVQGVYVEEPALSPMI 637

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
                      DDA  RR+I I F   I++R      +   +  L
Sbjct: 638 FTTN--KAYPADDALLRRFIGILF--TISDRVKEDKAREFEREVL 678


>gi|324111267|gb|EGC05249.1| poxvirus D5 protein [Escherichia fergusonii B253]
          Length = 777

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPLHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|113460678|ref|YP_718744.1| phage DNA primase-like protein [Haemophilus somnus 129PT]
 gi|112822721|gb|ABI24810.1| phage DNA primase-like protein [Haemophilus somnus 129PT]
          Length = 636

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 140/442 (31%), Gaps = 57/442 (12%)

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            + +  ++N    +   F+   +    +VE  +                I + +     +
Sbjct: 215 QIWQVKDENALQREIKTFFSEYNANYGSVETINNMIKCLTVDLPLFDDEIKAAM---DYQ 271

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EVMDY 485
           FL  ++G+L+  T   +   KE Y+T      ++E + P+  F   +        E    
Sbjct: 272 FLAFKNGVLNKRTLAFLPHKKEYYLTAINPCDYLETQTPTPNFDKWLDFISNDSIERKKA 331

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
               + M L   +  Q  +   G  GSGKST +N+ K   G+   +  +   + ++    
Sbjct: 332 LLAALYMILNNRSDWQLTLEFIGEPGSGKSTFLNVAKMLSGDANHVAIDLETLQRDSKTR 391

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASF 604
                     L+    +     ++   I  +  +K ++GGD +        T+S    + 
Sbjct: 392 D--------MLLNKTFLYA--PDQGRYIGESSVLKAISGGDEILVNPKGKKTFSA-RINA 440

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKG 662
              I  N     +N      RR +V PF K I +  RD    +K++              
Sbjct: 441 IIAICSNTLPIYKNDGGGMERRRVVFPFYKAIDDSARDDKLTEKIQ-AELGGII------ 493

Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQ---------GTDTYQAWI----------DDCCDI 703
            +    +      PE   +A ++++            D    +I          +DC  +
Sbjct: 494 -RKLYDE---FKDPEDAKQALKQQKASAEALKMKTENDHILEFIQEFELISQPSNDCLIL 549

Query: 704 GENLWEESHS-------LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
           G +    ++            Y  Y        +  +        + Q  F    ++   
Sbjct: 550 GSSRGIPAYESPLIFERFYWCYLYYCYITGREGKFILKPVEFKKEVIQA-FKTIGEKPFT 608

Query: 757 EKEWKSKRIIKGLKLKPAFESV 778
            ++          K K   E+V
Sbjct: 609 ARQLGGGYNYTNAKFKNKHETV 630


>gi|296101066|ref|YP_003611212.1| nucleoside triphosphatase, D5 family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055525|gb|ADF60263.1| nucleoside triphosphatase, D5 family [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 556

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/373 (16%), Positives = 114/373 (30%), Gaps = 64/373 (17%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD ++G     +K  ++       F            +  F   +     
Sbjct: 190 RRLIGFRNGVLDTQSGLFSPHSKSYWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAG 249

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
            + +  D     + M L      Q F+ + G GGSGKS L  +     G     +A+   
Sbjct: 250 KNPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSADIDT 309

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y N Y
Sbjct: 310 LEDPRKR---------ASLIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPY 359

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + I    RD     K+        
Sbjct: 360 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVI 417

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTY------------- 693
            +  ++              P       + +         ++  D               
Sbjct: 418 VRQLMQ----------KFSDPMAARALLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 467

Query: 694 -QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFI 748
              ++ +   +  N       L  +Y  Y E      R  +S +       + LK+ G  
Sbjct: 468 NGMFMGNASIVPRNYR---KYLYHAYLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLN 522

Query: 749 GGIKREKIEKEWK 761
              +  K   +  
Sbjct: 523 YEKRHTKQGIQTN 535


>gi|331671414|ref|ZP_08372212.1| putative P4-specific DNA primase [Escherichia coli TA280]
 gi|331071259|gb|EGI42616.1| putative P4-specific DNA primase [Escherichia coli TA280]
          Length = 777

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 110/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+ T      
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKI-THELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|284923731|emb|CBG36828.1| putative prophage DNA primase [Escherichia coli 042]
          Length = 777

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + IA   RD     K+        
Sbjct: 581 STHIP-AVIRAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P +     + +         ++  D    +I    +    
Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                              L  +Y  Y E      R  +S +   L     LK+ G    
Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745

Query: 751 IKREKIEKEWK 761
            +  K   +  
Sbjct: 746 KRHTKQGIQTN 756


>gi|269219193|ref|ZP_06163047.1| primase [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269211340|gb|EEZ77680.1| primase [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 617

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 126/351 (35%), Gaps = 35/351 (9%)

Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--- 468
            +I  +  + ++++   +  ++G+ + ET Q    T E      +   +     S     
Sbjct: 202 RTIVPVVDETMEAN--LVPVRNGVYNTETKQLEAFTPERVFLTKSPVRYDPQAVSPTKTL 259

Query: 469 -------FLDLVSGYFE-SEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMN 519
                  F   ++  F+  EE +  F   V  +L +  +  + F      G SGKSTL++
Sbjct: 260 SDGDTWTFDCWLADLFDEDEERVTLFWEIVAASLRVYKSYEKAFFFYSSSGSSGKSTLLH 319

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-I 578
           L++   G +   +       ++   E          ++G   V+  ET+ +  +   K  
Sbjct: 320 LMRNILGQRNCASLSLGAFGKDFGCEP---------VLGVSAVLTDETDTHGFMKECKEF 370

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
           KQ    D +T +        +           N+     +  +A  RR+I +PFD+  A 
Sbjct: 371 KQYVTHDVITIQRKGVKA-VQWKPRGIVIQAGNELPEFSDKTEAMTRRFIFVPFDRCFAG 429

Query: 639 R-DASFAQKL--ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
             D S   +L  + +      +  L+     + + +     E  +  +++ R   D+   
Sbjct: 430 EFDPSIKSELMVDREVQEYVLRRALE-----LPEFVSFTEGEATMALRQQARVQNDSVLE 484

Query: 696 -WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            W+++  +   NL          +S +  +     +  +S +     L+  
Sbjct: 485 WWLEERGEFQTNL-IPWDFAFDVFSRWVARTNPGMKSAMSRKKFVQRLRAA 534


>gi|455528|emb|CAA54618.1| unnamed protein product [Streptococcus phage SFi18]
          Length = 277

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 47/289 (16%), Positives = 98/289 (33%), Gaps = 19/289 (6%)

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
            ++  E  +++           RF+  ++GI D    + +    +     +  T  VE  
Sbjct: 1   MSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDYKFINFSTIETELVENA 60

Query: 465 PSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
           P            +        E+++   + +  +L G +  ++ I + G G  GK T  
Sbjct: 61  PKPTINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQ 120

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AK 577
            LI    G + V   + +   +            L  + G  ++I  +      ++  + 
Sbjct: 121 QLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSN 171

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
              +  G+ ++      N Y       T     N     +N  +  +RR ++IPF K   
Sbjct: 172 FNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFG 230

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
             D ++A K +     E  ++ L   KA          P+   +  +E 
Sbjct: 231 INDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFSEPKATQERMQEF 277


>gi|187935270|ref|YP_001884288.1| hypothetical protein CLL_A0034 [Clostridium botulinum B str. Eklund
           17B]
 gi|187723423|gb|ACD24644.1| hypothetical protein CLL_A0034 [Clostridium botulinum B str. Eklund
           17B]
          Length = 586

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 86/536 (16%), Positives = 185/536 (34%), Gaps = 36/536 (6%)

Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF---SDAYNKAMFS 317
           +  +     + F+  +      K S  T         +       R    +D        
Sbjct: 56  NYSDSEKMIENFNVAKELFEINKYSEITQYSLDSKSEMFFKKFRDRIIENTDKIESIPLI 115

Query: 318 IYKKGHFLYTADTKAWYK-----KDKNNVYIWSLTLDKITA---SIMNFLVSMKEDVFDL 369
            Y+     + +     +K      +++    W+     +       + +   +K+  F+L
Sbjct: 116 SYEDNKKAFMSYIGGNFKALINSFNESKFVKWNGKAWIMLTEEEGKIEYNNFIKQCNFEL 175

Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
            +   +  K+      ++    +  + +  ++       L   + + I     + +   L
Sbjct: 176 EKNINNLEKDD-----FYKLSKKINSWDNKNRVSEALDKLRRDNAYIINLKYHNKNENIL 230

Query: 430 GEQDG-ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMD 484
             ++G I+DL  G+  K  +   I  ++    ++ + S +F    L L      + E ++
Sbjct: 231 CSKNGLIIDLNKGEIKKSCRNDLILNTSKYNLMDKKDSIKFVKDKLKLYKKVLGN-ERLE 289

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
           +    +   +LG N  Q  I + G G +GKST  N++K  F    V         +++  
Sbjct: 290 FILDLISYKMLGKN-LQLAIFMIGAGATGKSTFKNIVKDLFEENAVNIPYTYFTTKHKGN 348

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
           +    +  L+ L      + SE +  D IN AK K +       AR   G          
Sbjct: 349 DDVSRDDLLVSLDNKSFGLSSEGDTTDIINQAKFKNILSNSSEKARATRGKLIDVDLQKL 408

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
              I  N      N DDA  RR + I F   I   +R+ +F ++   +       +F+  
Sbjct: 409 DLLIDTNDIPQFTNYDDAVNRRLLFIKFINKIPIESRNTNFYKEEIKENFDYLFSYFIYR 468

Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
               I+K L   +P +      +  +  D+   + ++     E+ +     + K+Y +  
Sbjct: 469 AMNLINKTL--IVPNIIKDDTMQNIKELDSLLKFSNEVIAPIEDFFVSCEEVEKAYIKMC 526

Query: 723 EQELNYDRKR----ISTRTVTLNLKQKGFIGGIK-----REKIEKEWKSKRIIKGL 769
           E+E   +        + +  +  L +     G +     R+    + +   +I GL
Sbjct: 527 EEENLVNIIPGDLIGTAKGYSYLLNKLREKPGYENIERIRKSDGSKNRKCYVINGL 582


>gi|251793975|ref|YP_003008707.1| D5 N like family [Aggregatibacter aphrophilus NJ8700]
 gi|247535374|gb|ACS98620.1| D5 N like family [Aggregatibacter aphrophilus NJ8700]
          Length = 607

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 153/449 (34%), Gaps = 62/449 (13%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV---EENSKAKSTAQSLEA-GS 413
           FL    + +   S   +    N    +    T  +R+ +   +E    K T +SL+A   
Sbjct: 171 FLQWTDKPIRQDSTIGKTLEYNGLYWQALPETILQRKIMAFYDEQGYNKYTVRSLKAIAD 230

Query: 414 IFSITSDLLD-SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-EGEPSQEFLD 471
           + +I +D +   +  F+G Q+G+L  +TG+ +    + ++            + +  F D
Sbjct: 231 LVAIKADEIPTQNPDFIGFQNGVLSKKTGEFMPHKIDHFLRSIEKFDCDTRSQNTPHFDD 290

Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            +      ++   +     + M L   ++   F+   G  G+GKS    +     G    
Sbjct: 291 WIEFVSNGNQNRKNAILAGLYMVLTNRHEWGLFLEATGTAGAGKSVFSRIASIINGESNT 350

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
                 ++  +R             L+G  + I S   +  + +A ++K +TGGD +T +
Sbjct: 351 GYINLQELEIDRKR---------AMLIGKSLAI-SPDQKPYKGSADELKAITGGDNVTVK 400

Query: 591 LNYGNTY-SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
           L Y + +  +    F   +V N  L   + +    RR I+IPFD+ I    +D  F +K 
Sbjct: 401 LVYVDDFAVKLTPVF--MLVTNYPLLFTDRNGGIARRRIIIPFDRAIPKEKKDVHFTEK- 457

Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQAWI- 697
             K         L               P+      EE R         + ++    ++ 
Sbjct: 458 VQKEVYGIVNKLLA----------LFPEPDTARTILEEYRDLDEGKHIKRESNHLIDFLG 507

Query: 698 ---------DDCCDIG--ENLWEESHS-------LAKSYSEYREQELNYDRKRIS-TRTV 738
                    +    IG     +            L  +Y  Y E        R S    +
Sbjct: 508 HFELREHRNEKALRIGNARGGFIPYGDRLGKPDSLYSAYLFYCECNGLSPINRFSFNNAL 567

Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
           +   K+ G     + + +     +    K
Sbjct: 568 SDAFKEAGEKIPFEIKMLYGNETTNAYWK 596


>gi|324117000|gb|EGC10912.1| phage/plasmid primase [Escherichia coli E1167]
          Length = 590

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 64/412 (15%), Positives = 130/412 (31%), Gaps = 58/412 (14%)

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEA-GSIFSITSDLLDSSSRFLGEQDGILDLETG 441
                      +  + N   ++ + +++A      +  +  D+    +  ++G+ D+ +G
Sbjct: 184 MELSRKMVSIYEKNKTNFSKRAISNAVDALKISVPVMREQSDT---IIPFENGVYDITSG 240

Query: 442 QKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMA 493
           + +  + E +IT   G  +    P       +  F   +S         M      + M 
Sbjct: 241 RFLPHSPEHWITSHNGIYYTPPAPGENIHDHAPHFHRWLSHAAGYDSSKMKRICAALFMV 300

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           L      Q FI   G GGSGKS    + +   G Q    ++   +      E        
Sbjct: 301 LANRYDWQLFIEATGEGGSGKSMFTQIARMLAGEQNTAGSDMKALDDAGGRE-------- 352

Query: 554 IRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
            +L+G  ++I+   ++         IK +TGGD +     Y   Y+    S       NK
Sbjct: 353 -QLVGKSLIIL--PDQPKYFGEGNGIKAITGGDPLQINPKYEKRYTTVLRSVVLI-TNNK 408

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASF-AQKLETKYTLEAKKWFLKGVKAYISKGL 671
            +          RR ++  F+ PIA  +      K          +  L          +
Sbjct: 409 PMVFTERAGGISRRRVIFQFNNPIAEENKDTCLPKKIAAEIPVIVRRLL----------V 458

Query: 672 DVDIPEVCL---------KAKEEERQGTDTYQAWIDDCCDIGENL-----------WEES 711
           +   PE            +   E ++ TD   A+ +   ++GE +               
Sbjct: 459 NFSDPEKARTLLLEQRDGEEAMEVKRHTDPLYAFCNHIVELGEAVGMFMGNLNIYPRAPR 518

Query: 712 HSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIEKEWK 761
             L  +Y  Y +         ++   +     +K+ G      +  +   + 
Sbjct: 519 IYLYHAYLAYMDAYGFDKPLNLTNFGKDFPKVMKEYGAEYKKAKTNVGMRYN 570


>gi|304558208|gb|ADM40872.1| DNA primase [Edwardsiella tarda FL6-60]
          Length = 777

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 122/408 (29%), Gaps = 69/408 (16%)

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
            R +    + K  S  ++L+       T        R +G ++G+LD ++G      K  
Sbjct: 381 QRLRAPFSSGKIASVVETLKLIIPQQDTPA-----RRLIGFRNGVLDTQSGVFSPHHKSH 435

Query: 451 YITKSTGTPFVEGEP-------SQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQR 502
           ++       F            +  F   +        +  D     + M L      Q 
Sbjct: 436 WLCTLCDVDFTPPVEGETLETHAPNFWRWLDRAAGKSPQKRDVILAALFMVLANRYDWQL 495

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
           F+ + G GGSGKS L  +     G     +A+   +   R             L+G  ++
Sbjct: 496 FLEVTGPGGSGKSILAEIATLLAGEDNATSADIDTLEDPRKR---------ASLIGFSLI 546

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
            + +  +     A  +K +TGGD ++    Y N YS          V N  +   +    
Sbjct: 547 RLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPYSTHIP-AVILAVNNNPMRFTDRSGG 604

Query: 623 WWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
             RR ++I F + I    RD     K+         +  ++              P    
Sbjct: 605 VSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVIVRQLMQ----------KFSDPMTAR 653

Query: 681 KAKEEE---------RQGTDTY--------------QAWIDDCCDIGENLWEESHSLAKS 717
              + +         ++  D                  ++ +   I  N       L  +
Sbjct: 654 ALLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQTSGMFMGNASIIPRNYR---KYLYHA 710

Query: 718 YSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGIKREKIEKEWK 761
           Y  Y E      R  +S +       + LK+ G     +  K   +  
Sbjct: 711 YLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLNYEKRHTKQGIQTN 756


>gi|238763412|ref|ZP_04624375.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
 gi|238763493|ref|ZP_04624455.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
 gi|238698275|gb|EEP91030.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
 gi|238698356|gb|EEP91110.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
          Length = 776

 Score =  146 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 74/531 (13%), Positives = 151/531 (28%), Gaps = 103/531 (19%)

Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN---KAMFSIYKK 321
            N  W+           +  +   +            L  + F         A+ + +  
Sbjct: 288 INGDWNDIYQVR--GAVETANLLHAFCQRGETSPFDSLSEADFKAMSASEKAALIAEHYN 345

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
                 A  + +Y+ +     I            + F +  +E                 
Sbjct: 346 DRLAIDAFGETFYQYENGAWKI------------LTFRILSREVAALF------------ 381

Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441
                     + +     +       +L    I  +  +    +   +G ++G+ +  TG
Sbjct: 382 ---------QKIRAPFSAAGISGVLDTL--KLIIPVHKEP---ARHLIGFRNGVFNTVTG 427

Query: 442 QKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYF-ESEEVMDYFTRCVGMA 493
           Q     KE ++       +   +        +  F   +       EE        + M 
Sbjct: 428 QFSPHRKEYWLRTVNNVDYTTYKEGENLPEHAPYFWQWLDRAASGREEKRQRILAALFMV 487

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           L      Q F+ + G GGSGKS +  +     G      A  + I  +R           
Sbjct: 488 LANRYDWQLFLEVTGPGGSGKSVMAEIATLLAGKDNTTAATINTIESSR---------ER 538

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             ++G  ++I+ +  +    + A IK +TGGD +     Y + YS S        V N  
Sbjct: 539 SAIVGYSLIILPDQEKWSG-DEAGIKAITGGDAVMVDPKYKDAYSTSIP-AVILAVNNNP 596

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
           +   +      RR +++ F + I    RD     K+E        ++ ++          
Sbjct: 597 MRFSDRSGGVSRRRVILSFPEVIPVNERDPQMKSKIE-SELSVIVRYLMQ---------- 645

Query: 672 DVDIPEVCLKAKEEERQG---------TDTYQAWIDDCCDIGENLWE------------- 709
               P    K  +E++           +D    +   C  +  +                
Sbjct: 646 RFANPGDARKLLQEQQNSDEALEIKRNSDPLVDF---CGYLLASAEANGLYMGNGNIIPR 702

Query: 710 -ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
                L  +Y  + E   +   K ++     L L Q     G+   K + +
Sbjct: 703 NPRKYLYHAYLSFMEARGHL--KPMTLTAFGLALPQILREYGLALLKRKTK 751


>gi|300718526|ref|YP_003743329.1| Plasmid and phage DNA primase [Erwinia billingiae Eb661]
 gi|299064362|emb|CAX61482.1| Plasmid and phage DNA primase [Erwinia billingiae Eb661]
          Length = 776

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 116/371 (31%), Gaps = 62/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  T       K+ ++   +   F            +  F   +     
Sbjct: 410 RRLIGFRNGVLDTRTATFSPHRKDYWLRTVSDVDFTPPVTGETLESHAPHFWQWLDRAAG 469

Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 470 RCAEKRDIILAALFMVLANRFDWQLFLEVTGPGGSGKSIMAEIATMLAGTDNTTSATIET 529

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +  +R             ++G  ++I+ +  +     A  IK +TGGD ++    Y + Y
Sbjct: 530 LESSR---------ERAAVIGYSLIILPDQEKWSGDGAG-IKAITGGDAVSVDPKYRDAY 579

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR +++ F + +  + RD    +K+        
Sbjct: 580 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEIVAASERDPQLKEKI-RGEMAVI 637

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDC----CD 702
            +  ++              P+      + +         ++  D    +   C      
Sbjct: 638 VRQLMQ----------RFSQPQDARALLQSQQNSGEAMRIKRDADPMVDF---CGYLFTA 684

Query: 703 IGENLW----------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
              N            +    L  +Y  Y E      +  +S +   L L+  G +    
Sbjct: 685 PEPNALYMGNASIRPAQPRRYLYHAYLCYMEANGY--KNPLSMKMFGLALE--GILREYG 740

Query: 753 REKIEKEWKSK 763
              +++  K  
Sbjct: 741 LSYLKRRTKQG 751


>gi|172035639|ref|YP_001802140.1| hypothetical protein cce_0723 [Cyanothece sp. ATCC 51142]
 gi|171697093|gb|ACB50074.1| hypothetical protein cce_0723 [Cyanothece sp. ATCC 51142]
          Length = 732

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 56/406 (13%), Positives = 127/406 (31%), Gaps = 48/406 (11%)

Query: 16  NGFKLIPLRLGDKRPQRLGKWEEQ------LLSSEKIDK----LPACGFGFVCGVGEQPL 65
           N ++ IP+   +K P     ++         L+ ++I +          G   G     +
Sbjct: 27  NNWRFIPVD-KNKAPMTTKTFQATGWTKKEALTKQEIIRELCDYDVNAVGLALGKHSVNV 85

Query: 66  YAFDIDSKDEKTANTFKDTF------EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
            A D D    ++ +   +        E L  T     G+  +    + ++++ + +    
Sbjct: 86  VAIDHDG---ESCDKLIEELTGLSLKEALPSTVAFSSGRTGRYQKLYSVSEDILNQLTNK 142

Query: 120 ESTQGHLDILGCG--------QYFVAYNIHPKTKKE-YTWTTPPHRFKVEDTPLLSEEDV 170
           +   G  D  G           Y +    HPKT+   Y W       +++ TPL      
Sbjct: 143 QIKTGEKDEDGKSEQLEFRVNGYSIIMGFHPKTQSYSYHWLDGCSPQEIDITPLPEWWLN 202

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
            +L               K            N   +       L    + F   ++D+W 
Sbjct: 203 IWLNSEKTNKKEKKKSLSKINDI-------PNDLSSIISKCQNLLSQLKPFRCDNYDDWN 255

Query: 231 PVVMAVHHETRG----SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
            V MA+HHE       S    ++   WS+  + + +     KW +FD  +         T
Sbjct: 256 RVGMALHHEAGDDPILSELLLDLWTNWSQNSNKFKDGECATKWQSFDSNK-----DNTVT 310

Query: 287 FTSLFYHHGKL--IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344
             +L     +   +P+    +   D   +  + +      +Y  +   + +     +   
Sbjct: 311 LGTLVEWAKEDSNLPQQNSKNTLDDE-RQEFYQMLDDIDKIYEEEDYGFQQVLSRKIAKK 369

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390
                 I+  + ++  +    +     + ++  K++    +  +  
Sbjct: 370 YGYNSNISQMLKDYWNANPNLLKSDFIDIKNYVKDTPRIDYLISNL 415


>gi|161615642|ref|YP_001589607.1| hypothetical protein SPAB_03426 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161365006|gb|ABX68774.1| hypothetical protein SPAB_03426 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 777

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 122/408 (29%), Gaps = 69/408 (16%)

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
            R +    + K  S  ++L+       T        R +G ++G+LD  TG      K  
Sbjct: 381 QRLRAPFSSGKIASVVETLKLIIPQQDTPA-----RRLIGFRNGVLDTATGTFSPHHKSH 435

Query: 451 YITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQR 502
           ++       F            +  F   +        E  D     + M L      Q 
Sbjct: 436 WLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAGGRPEKRDVILAALFMVLANRYDWQL 495

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
           F+ + G GGSGKS L  +     G     +A+   +   R             L+G  ++
Sbjct: 496 FLEVTGPGGSGKSILAEIATLLAGEDNATSADIDTLEDPRKR---------ASLIGFSLI 546

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
            + +  +     A  +K +TGGD ++    Y N YS          V N  +   +    
Sbjct: 547 RLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPYSTHIP-AVILAVNNNPMRFTDRSGG 604

Query: 623 WWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
             RR ++I F + IA   RD     K+         +  ++              P    
Sbjct: 605 VSRRRVIIHFPEQIAPDERDPQLKDKIAR-ELAVIVRQLMQ----------KFSDPMAAR 653

Query: 681 KAKEEE---------RQGTDTY--------------QAWIDDCCDIGENLWEESHSLAKS 717
              + +         ++  D                  ++ +   +  N       L  +
Sbjct: 654 TLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQTNGMFMGNASIVPRNYR---KYLYHA 710

Query: 718 YSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGIKREKIEKEWK 761
           Y  Y E      R  +S +       + LK+ G     +  K   +  
Sbjct: 711 YLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLNYEKRHTKQGIQTN 756


>gi|300719024|ref|YP_003743827.1| phage/plasmid primase, P4 family [Erwinia billingiae Eb661]
 gi|299064860|emb|CAX61980.1| Phage/plasmid primase, P4 family [Erwinia billingiae Eb661]
          Length = 776

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/373 (16%), Positives = 121/373 (32%), Gaps = 64/373 (17%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  T       K+ ++   +   F    P       +  F   +     
Sbjct: 410 RRLIGFRNGVLDTRTATFSPHRKDYWLRTVSDVDFTPPVPGETLESHAPHFWQWLDRAAG 469

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
            S E  D     + M L      Q F+ + G GGSGKS + ++     G     +A    
Sbjct: 470 RSAEKRDIILAALFMVLANRFDWQLFLEVTGPGGSGKSIMADIATMLAGTDNTTSATIET 529

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +  +R             ++G  ++I+ +  +     A  IK +TGGD ++    Y + Y
Sbjct: 530 LESSR---------ERAAVIGYSLIILPDQEKWSGDGAG-IKAITGGDAVSVDPKYRDAY 579

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR +++ F + +  + RD    +K+        
Sbjct: 580 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEIVSASERDPQLKEKI-RGELSVI 637

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDC----CD 702
            +  ++              P+      + +         ++  D    +   C      
Sbjct: 638 VRQLMQ----------RFSQPQDARTLLQSQQNSDEAMRIKRDADPMVDF---CGYLFTT 684

Query: 703 IGENL----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLN----LKQKGFI 748
              N            +    L  +Y  Y E      +  +S +   L+    L++ G  
Sbjct: 685 PEPNALYMGNASIRPSQPKRYLYHAYLAYMEANGY--KNPLSMKMFGLSLDGILREYGLN 742

Query: 749 GGIKREKIEKEWK 761
              +R K+  +  
Sbjct: 743 YLKRRTKLGIQTN 755


>gi|323978458|gb|EGB73541.1| poxvirus D5 protein [Escherichia coli TW10509]
          Length = 777

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 123/408 (30%), Gaps = 69/408 (16%)

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
            R +    + K  S  ++L+       T        R +G ++G+LD ++G     +K  
Sbjct: 381 QRLRAPFSSGKIASVVETLKLIIPQQDTPA-----RRLIGFRNGVLDTQSGLFSPHSKSH 435

Query: 451 YITKSTGTPFVEGEP-------SQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQR 502
           ++       F            +  F   +        +  D     + M L      Q 
Sbjct: 436 WLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAGKSPQKRDVILAALFMVLANRYDWQL 495

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
           F+ + G GGSGKS L  +     G     +A+   +   R             L+G  ++
Sbjct: 496 FLEVTGPGGSGKSILAEIATLLAGEDNATSADIDTLEDPRKR---------ASLIGFSLI 546

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
            + +  +     A  +K +TGGD ++    Y N YS          V N  +   +    
Sbjct: 547 RLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPYSTHIP-AVILAVNNNPMRFTDRSGG 604

Query: 623 WWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
             RR ++I F + I    RD     K+         +  ++              P    
Sbjct: 605 VSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVIVRQLMQ----------KFSDPMTAR 653

Query: 681 KAKEEE---------RQGTDTY--------------QAWIDDCCDIGENLWEESHSLAKS 717
              + +         ++  D                  ++ +   I  N       L  +
Sbjct: 654 ALLQSQQNSDEALNIKRDADPTFDFCGYLEMLPQTNGMFMGNASIIPRNYR---KYLYHA 710

Query: 718 YSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGIKREKIEKEWK 761
           Y  Y E      R  +S +       + LK+ G     +  K   +  
Sbjct: 711 YLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLNYEKRHTKQGIQTN 756


>gi|260577360|ref|ZP_05845331.1| ATPase-like protein [Rhodobacter sp. SW2]
 gi|259020433|gb|EEW23758.1| ATPase-like protein [Rhodobacter sp. SW2]
          Length = 814

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/526 (14%), Positives = 151/526 (28%), Gaps = 68/526 (12%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326
             ++     E  D  + R                  L         K +       H   
Sbjct: 329 EDFNDILVREGEDAVRSRIAGAEPLRADQADTRSKDLYIGSDVEIAKRVREDLTARHGRI 388

Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
                A+++                  +I + L+ +    +D ++      + S+     
Sbjct: 389 VHAEGAFWRYTGTEW-----------EAIEDHLIRLPVHAYDGADFMTAAGEPSR----- 432

Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE---TGQK 443
                  ++  ++   +  A   E            ++    +    G +  +   T   
Sbjct: 433 ---VKLSRSRVDSVLNECAALCAEPHF--------FENPPAGINCTSGFIRFDAAGTPHL 481

Query: 444 VKPTKELYITKSTGTPFVEG-----EPSQEFLDLVSGYF-ESEE---VMDYFTRCVGMAL 494
               +      +    +  G             L++G F    E     D      G A 
Sbjct: 482 EPHHRNHRCRHTLPGHWHAGVPGTPPEGSLLHRLLTGSFKGDPEAQAKCDLLAEICGSAA 541

Query: 495 LGGNK---AQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
           LG        R + + G    +GKS  +NL +       + +  AS +  +R        
Sbjct: 542 LGYATHLLQPRAVVLHGMAAENGKSQFLNLARGLLPPSAICSVPASQMGDDRH------- 594

Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
             ++ L+G  +    E +  + I +   K +  GD +  R  Y  +  E  +        
Sbjct: 595 --VLGLVGKLLNASDELSA-EAIASDAFKAVVTGDPVQGRDVYK-SRVEFRSVAQNLFAT 650

Query: 611 NKHLFVRN-PDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
           N     +   D    RR +VIPF +  PI  R A   +++ +        W + G    I
Sbjct: 651 NTLPSFKGGVDRGVQRRLMVIPFTRTIPIPERVADIGKRIASDEADLLLAWAVHGAARLI 710

Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYSEYRE 723
            +  +  IPE C +A  +   G D   AWID C  +           +      +  +  
Sbjct: 711 RQ-RNFAIPESCHRALLDWVLGEDPVLAWIDACVRVQPIVNGGPMLATRDAHLRFQNWAL 769

Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
            E     K  +       ++ +      KR        + R   G+
Sbjct: 770 AEGFKTEKIPAINGFVQRVQAQVAGIQHKR------TSTGRFFLGI 809


>gi|204927104|ref|ZP_03218306.1| nucleoside triphosphatase, D5 family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323769|gb|EDZ08964.1| nucleoside triphosphatase, D5 family [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 777

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 123/408 (30%), Gaps = 69/408 (16%)

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
            R +    + K  S  ++L+       T        R +G ++G+LD ++G     +K  
Sbjct: 381 QRLRAPFSSGKIASVVETLKLIIPQQDTPA-----RRLIGFRNGVLDTQSGLFSPHSKSH 435

Query: 451 YITKSTGTPFVEGEP-------SQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQR 502
           ++       F            +  F   +        +  D     + M L      Q 
Sbjct: 436 WLRTLCDVDFTPPVEGEMLETHAPNFWRWLDRAAGKSPQKRDVILAALFMVLANRYDWQL 495

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
           F+ + G GGSGKS L  +     G     +A+   +   R             L+G  ++
Sbjct: 496 FLEVTGPGGSGKSILAEIATLLAGEDNATSADIDTLEDPRKR---------ASLIGFSLI 546

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
            + +  +     A  +K +TGGD ++    Y N YS          V N  +   +    
Sbjct: 547 RLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPYSTHIP-AVILAVNNNPMRFTDRSGG 604

Query: 623 WWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
             RR ++I F + I    RD     K+         +  ++              P    
Sbjct: 605 VSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVIVRQLMQ----------KFSDPMTAR 653

Query: 681 KAKEEE---------RQGTDTY--------------QAWIDDCCDIGENLWEESHSLAKS 717
              + +         ++  D                  ++ +   I  N       L  +
Sbjct: 654 ALLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQTNGMFMGNASIIPRNYR---KYLYHA 710

Query: 718 YSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGIKREKIEKEWK 761
           Y  Y E      R  +S +       + LK+ G     +  K   +  
Sbjct: 711 YLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLNYEKRHTKQGIQTN 756


>gi|21910493|ref|NP_664761.1| putative DNA primase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876241|ref|NP_795450.1| putative DNA primase [Streptococcus pyogenes phage 315.2]
 gi|21904692|gb|AAM79564.1| putative DNA primase - phage-associated [Streptococcus pyogenes
           MGAS315]
          Length = 290

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 95/266 (35%), Gaps = 16/266 (6%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +  +L G    ++ I   G G  GK T   +I    G + V   + +   +         
Sbjct: 1   MAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKNVAPLKLNQFSE--------- 51

Query: 550 NPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
              L  + G  ++I  +      ++  +    +  G+ ++      N Y       T   
Sbjct: 52  RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYMAI-FKKTVIQ 110

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
             N     +N  +  +RR I+IPF K  ++ + ++A K +     E  ++ L   KA   
Sbjct: 111 STNGMPSFKNKSNGTYRRIIIIPFQKTFSSTEDNWAIKDDYINRKEVLEYVL--WKAINL 168

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
                  P+   +     ++ ++T  A+IDD  +   +    +  L   Y E+ +   + 
Sbjct: 169 DFDRFSEPKATQERMHAFKRDSNTILAFIDDWFERFTSTVLPTRFLWWLYKEWCKDNGHT 228

Query: 729 DRKRISTRTVTLNLKQKGFIGGIKRE 754
               +   T    L      G +K++
Sbjct: 229 ---PLKQSTFENELSTNIPDGWVKKK 251


>gi|253990202|ref|YP_003041558.1| hypothetical protein PAU_02725 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253781652|emb|CAQ84815.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 778

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/443 (13%), Positives = 132/443 (29%), Gaps = 52/443 (11%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            E V+  +    +   +++  R       +       +   +   +++            
Sbjct: 351 SEMVYHYNGTTWETVSDNELRRAMVAIFDQHDTPYSPNGINNAICAMKLQVPIIGEQRQ- 409

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PSQEFLDLVSG 475
                 +G  +G+ +L T + +    E ++    G  F +          + +F   +S 
Sbjct: 410 ----DLIGFSNGVYELSTQKFIPHQPEHWLMNHNGIKFTQPAIGENLPDHAPDFYRWLSH 465

Query: 476 YFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
               +E  M+     + M L      Q FI + G GGSGKS    +     G     +  
Sbjct: 466 AAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSIFTYIATLLAGEHNTASGN 525

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNY 593
              + + R            + +G  +  I+  ++   +     IK +TG D +     Y
Sbjct: 526 MRALDEARGR---------YQFVGKSL--ITLPDQVKYVGEGAGIKAITGSDLIEIDGKY 574

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
              +S            N+ +     +    RR ++ PF+ P+    +D    +K+    
Sbjct: 575 EKQFSTII-KAVVLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKISR-E 632

Query: 652 TLEAKKWFL-KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW------IDDCC--- 701
                +  L +      +K L     +         +  +D    +      ++D     
Sbjct: 633 LPVIIRHLLNEFADQNKAKKLLQTQRDSNEALT--VKSNSDPLYRFCGYLVSVNDTTGMK 690

Query: 702 --DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
             +   +       L  +Y  + E       + ++      +L +             KE
Sbjct: 691 MGNKNISPRAPRMYLYHAYLSFMEAHGF--ERPLTLTKFGESLPKIMLE-------YRKE 741

Query: 760 WKSKRIIKGLKLKPAFESVDDNS 782
           ++  R  KG           +  
Sbjct: 742 YRKVRTKKGYSYNVELSEEAEEW 764


>gi|300723481|ref|YP_003712786.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
 gi|297630003|emb|CBJ90638.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
          Length = 808

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/599 (12%), Positives = 165/599 (27%), Gaps = 60/599 (10%)

Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
           L   G           + V   V  +   S         W K                  
Sbjct: 226 LHNDGAVLAAIDESNLLTVAELVRKQWPESKIILAADNDWHKPEERDKNGKLKKNVGKIA 285

Query: 274 FEEIGDTAKKRSTFT-SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332
            E+         T   + +        +         A++  ++ + +K      A    
Sbjct: 286 AEKTAKAINGWVTLPPTEYKADWDDYRQRHGTEAAKQAFSNGLYQVREKAPVNSEATENY 345

Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMK-----EDVFDLSEEPEDNNKNSKSPRFWF 387
             K  K N  +  +   +  A ++     +      E V+  +    +   +++  R   
Sbjct: 346 ETKPKKANNNLAQMAASQRGALLVEHYKKIAVHAESETVYHYNSATWETVSDNELRRAMV 405

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447
               +       +   +   +++                  +G  +G+  L T Q     
Sbjct: 406 AFFDQHDTPYSPNGINNAICAMKLQIPVIGEQRQ-----DLIGFSNGVYALSTQQFTPHQ 460

Query: 448 KELYITKSTGTPFVEGE-------PSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNK 499
            E ++    G  F            + +F   +S     +E  MD     + M L     
Sbjct: 461 PEHWLMNHNGIVFTLPAVGENLPDHAPDFYRWLSHAAGQNENKMDRIKAALFMILANRYD 520

Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
            Q FI + G GGSGKS    +     G     +     + + R            + +G 
Sbjct: 521 WQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASGNMRALDEARGR---------YQFVGK 571

Query: 560 RIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
            +  I+  ++   +     IK +TGGD +     Y   +S            N+ +    
Sbjct: 572 SL--ITLPDQVKYVGEGAGIKAITGGDLIEVDGKYEKQFSTVI-KAVVLATNNEPMSFTE 628

Query: 619 PDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
            +    RR ++ PF+ P+    +D    +K+         +  L     +  +     + 
Sbjct: 629 RNGGIARRRVIFPFNIPVKESEKDPQLPEKISR-ELPVIIRHLLN---EFADQNKAKKLL 684

Query: 677 EVCLKAKEEE--RQGTDTYQAW------IDDCC-----DIGENLWEESHSLAKSYSEYRE 723
           +    + E    +  +D    +      ++D       +   +       L  +Y  + E
Sbjct: 685 QAQRDSNEALTVKSHSDPLYRFCGYLVSVNDMTGMKMGNKNISPRAPRLYLYHAYLSFME 744

Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782
                  + ++      ++ +             KE++  R  KG           +  
Sbjct: 745 AHGF--ERPLTLTKFGESIPKIMLE-------YRKEYRKVRTKKGYSYNVELSEEAEEW 794


>gi|291335727|gb|ADD95331.1| hypothetical protein cce_0723 [uncultured phage MedDCM-OCT-S05-C22]
          Length = 651

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 82/270 (30%), Gaps = 37/270 (13%)

Query: 54  FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
            G   G+    +   D+D      +   K     L G PI+   +       FR+ +E  
Sbjct: 64  VGVFTGIRGNGIVILDVD---RNLSKYLKAWGSSLDGAPIITSTKANAAKYLFRVPEELW 120

Query: 114 KKKKT---TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170
              K     +   G  +IL  G+  V +  +P   K            + D P   +  +
Sbjct: 121 ADVKGHGLRKEDGGDYEILW-GRQGVVFGAYPG-GKVSKPGQYLLDGDLADIPTAPDWLL 178

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
             + +  + I               T    +  Q    E  + +S  G+    G+ D W+
Sbjct: 179 AEMKQPPRTINKK--------ELDFTDRTQDEVQQIIFECLSVISPQGK----GTRDHWV 226

Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN-----FNYKWDTFDFEEIGDTAKKRS 285
            + MA+H        G  +   WS Q   Y  E          W +F             
Sbjct: 227 KIGMAIHSALPTD-MGLHLWASWSCQDPDYASEWEDSNPCEEVWYSF--------KGNGV 277

Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
              SL +   +   +     RFS+   K +
Sbjct: 278 GLGSLIWLADR---EDPKRKRFSEDTRKIV 304


>gi|16763293|ref|NP_458910.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|213648797|ref|ZP_03378850.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289824541|ref|ZP_06544100.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25301728|pir||AE1063 Bacteriophage P4 DNA primase (EC 2.7.7.-) [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505601|emb|CAD06954.1| Bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 777

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 110/373 (29%), Gaps = 64/373 (17%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  TG      K  ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + I    RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAII 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTY------------- 693
            +  ++              P       + +         ++  D               
Sbjct: 639 VRQLMQ----------KFSDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 688

Query: 694 -QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFI 748
              ++ +   I  N       L  +Y  Y E      R  +S +       + LK+ G  
Sbjct: 689 NGMFMGNASIIPRNYR---KYLYHAYLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLN 743

Query: 749 GGIKREKIEKEWK 761
              +  K   +  
Sbjct: 744 YEKRHTKQGIQTN 756


>gi|213582465|ref|ZP_03364291.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 388

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/373 (16%), Positives = 110/373 (29%), Gaps = 64/373 (17%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  TG      K  ++       F            +  F   +     
Sbjct: 22  RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 81

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 82  GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 141

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 142 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 191

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + I    RD     K+        
Sbjct: 192 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAII 249

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTY------------- 693
            +  ++              P       + +         ++  D               
Sbjct: 250 VRQLMQ----------KFSDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 299

Query: 694 -QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFI 748
              ++ +   I  N       L  +Y  Y E      R  +S +       + LK+ G  
Sbjct: 300 NGMFMGNASIIPRNYR---KYLYHAYLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLN 354

Query: 749 GGIKREKIEKEWK 761
              +  K   +  
Sbjct: 355 YEKRHTKQGIQTN 367


>gi|146312751|ref|YP_001177825.1| plasmid and phage DNA primase [Enterobacter sp. 638]
 gi|145319627|gb|ABP61774.1| plasmid and phage DNA primase [Enterobacter sp. 638]
          Length = 777

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 113/374 (30%), Gaps = 66/374 (17%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYF- 477
            R +G ++G+LD  TG      K  ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTLTGVFSPHNKSHWLRTLCDVDFTPPVDGETLETHAPNFWRWLDRAAS 470

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
            + E  D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 471 GNAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S    +    +  N  +   +      RR ++I F + I    RD     K+        
Sbjct: 581 SAYIPAVILAV-NNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLKDKIAR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P       + +         ++  D    +    C   E 
Sbjct: 639 VRQLMQ----------QFSDPMTARSLLQSQQNSDEALSIKRDADPTFDF----CGYLEA 684

Query: 707 L---------------WEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGF 747
           L                +  + L  +Y  Y E      +  +S +       + LK+ G 
Sbjct: 685 LPQTNGMFMGNANIIPRQPRNYLYHAYLVYMEANGY--KHVLSLKMFGLGLPMMLKEYGL 742

Query: 748 IGGIKREKIEKEWK 761
               +  K   +  
Sbjct: 743 NYDKRHTKQGTQTN 756


>gi|320665356|gb|EFX32443.1| alpha replication protein of prophage CP-933I [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 777

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/531 (13%), Positives = 149/531 (28%), Gaps = 101/531 (19%)

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323
            W+  D          R     +           +  + F+        + +   YK   
Sbjct: 290 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 346

Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
                + +   + +     +              +      DV  L +            
Sbjct: 347 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 381

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443
                   R      ++K  S  ++L+      I     + + + +G ++G+LD  TG  
Sbjct: 382 --------RLDAPFSSAKIASLVETLK-----LIVPQQQNPARQLIGFRNGVLDTRTGLF 428

Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495
               K+ ++       + +          +  F   +      + E  D     + M L 
Sbjct: 429 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 488

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
                Q F+ + G GGSGKS L  +     G     +A    +   R             
Sbjct: 489 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 539

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L+G  ++ + +  +     A  +K +TGGD ++    Y N YS          V N  + 
Sbjct: 540 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 597

Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
             +      RR +++ F   I    RD    +K+         +  ++            
Sbjct: 598 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 646

Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712
             P       + +         ++  D+   +     ++  +              +   
Sbjct: 647 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 705

Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
            L  +Y  Y E     N     +  + + L LK+ G     +R     +  
Sbjct: 706 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 756


>gi|15799978|ref|NP_285990.1| alpha replication protein of prophage CP-933I [Escherichia coli
           O157:H7 EDL933]
 gi|12513053|gb|AAG54598.1|AE005204_8 alpha replication protein of prophage CP-933I [Escherichia coli
           O157:H7 str. EDL933]
          Length = 796

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/531 (13%), Positives = 149/531 (28%), Gaps = 101/531 (19%)

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323
            W+  D          R     +           +  + F+        + +   YK   
Sbjct: 309 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 365

Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
                + +   + +     +              +      DV  L +            
Sbjct: 366 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 400

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443
                   R      ++K  S  ++L+      I     + + + +G ++G+LD  TG  
Sbjct: 401 --------RLDAPFSSAKIASLVETLK-----LIVPQQQNPARQLIGFRNGVLDTRTGLF 447

Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495
               K+ ++       + +          +  F   +      + E  D     + M L 
Sbjct: 448 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 507

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
                Q F+ + G GGSGKS L  +     G     +A    +   R             
Sbjct: 508 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 558

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L+G  ++ + +  +     A  +K +TGGD ++    Y N YS          V N  + 
Sbjct: 559 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 616

Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
             +      RR +++ F   I    RD    +K+         +  ++            
Sbjct: 617 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 665

Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712
             P       + +         ++  D+   +     ++  +              +   
Sbjct: 666 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 724

Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
            L  +Y  Y E     N     +  + + L LK+ G     +R     +  
Sbjct: 725 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 775


>gi|15829557|ref|NP_308330.1| DNA primase [Escherichia coli O157:H7 str. Sakai]
 gi|168749120|ref|ZP_02774142.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4113]
 gi|168755822|ref|ZP_02780829.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
 gi|168761913|ref|ZP_02786920.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
 gi|168769623|ref|ZP_02794630.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
 gi|168775431|ref|ZP_02800438.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4196]
 gi|168782620|ref|ZP_02807627.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4076]
 gi|168788540|ref|ZP_02813547.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC869]
 gi|168799812|ref|ZP_02824819.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
 gi|195937755|ref|ZP_03083137.1| putative DNA primase [Escherichia coli O157:H7 str. EC4024]
 gi|208809690|ref|ZP_03252027.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814873|ref|ZP_03256052.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822948|ref|ZP_03263266.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396448|ref|YP_002268896.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217324819|ref|ZP_03440903.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791433|ref|YP_003076270.1| alpha replication protein of prophage CP-933I [Escherichia coli
           O157:H7 str. TW14359]
 gi|261223633|ref|ZP_05937914.1| alpha replication protein of prophage CP-933I [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255948|ref|ZP_05948481.1| alpha replication protein of prophage CP-933I [Escherichia coli
           O157:H7 str. FRIK966]
 gi|13359760|dbj|BAB33726.1| putative DNA primase [Escherichia coli O157:H7 str. Sakai]
 gi|187769062|gb|EDU32906.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4196]
 gi|188016499|gb|EDU54621.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4113]
 gi|188999907|gb|EDU68893.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4076]
 gi|189356863|gb|EDU75282.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
 gi|189361353|gb|EDU79772.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
 gi|189367685|gb|EDU86101.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
 gi|189371667|gb|EDU90083.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC869]
 gi|189377822|gb|EDU96238.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
 gi|208729491|gb|EDZ79092.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
           O157:H7 str. EC4206]
 gi|208731521|gb|EDZ80209.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737141|gb|EDZ84825.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157848|gb|ACI35281.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
           O157:H7 str. EC4115]
 gi|217321040|gb|EEC29464.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590833|gb|ACT70194.1| alpha replication protein of prophage CP-933I [Escherichia coli
           O157:H7 str. TW14359]
 gi|320192406|gb|EFW67050.1| DNA primase , phage-associated [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638547|gb|EFX08255.1| alpha replication protein of prophage CP-933I [Escherichia coli
           O157:H7 str. G5101]
 gi|320644008|gb|EFX13088.1| alpha replication protein of prophage CP-933I [Escherichia coli
           O157:H- str. 493-89]
 gi|320649290|gb|EFX17841.1| alpha replication protein of prophage CP-933I [Escherichia coli
           O157:H- str. H 2687]
 gi|326338838|gb|EGD62656.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125]
 gi|326343458|gb|EGD67222.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1044]
          Length = 777

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 72/531 (13%), Positives = 149/531 (28%), Gaps = 101/531 (19%)

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323
            W+  D          R     +           +  + F+        + +   YK   
Sbjct: 290 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 346

Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
                + +   + +     +              +      DV  L +            
Sbjct: 347 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 381

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443
                   R      ++K  S  ++L+      I     + + + +G ++G+LD  TG  
Sbjct: 382 --------RLDAPFSSAKIASLVETLK-----LIVPQQQNPARQLIGFRNGVLDTRTGLF 428

Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495
               K+ ++       + +          +  F   +      + E  D     + M L 
Sbjct: 429 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 488

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
                Q F+ + G GGSGKS L  +     G     +A    +   R             
Sbjct: 489 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 539

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L+G  ++ + +  +     A  +K +TGGD ++    Y N YS          V N  + 
Sbjct: 540 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 597

Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
             +      RR +++ F   I    RD    +K+         +  ++            
Sbjct: 598 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 646

Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712
             P       + +         ++  D+   +     ++  +              +   
Sbjct: 647 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 705

Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
            L  +Y  Y E     N     +  + + L LK+ G     +R     +  
Sbjct: 706 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 756


>gi|268589891|ref|ZP_06124112.1| bacteriophage P4 DNA primase [Providencia rettgeri DSM 1131]
 gi|291314769|gb|EFE55222.1| bacteriophage P4 DNA primase [Providencia rettgeri DSM 1131]
          Length = 800

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 151/453 (33%), Gaps = 82/453 (18%)

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-D 423
            V+  S    +  K+S+  R   +         EN    S  +      +  + ++ + +
Sbjct: 381 TVYTYSGVMWEPIKDSELSREMADF------FIENETHFSMRRITGVIDVLKVIAEPMGE 434

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PSQEFLDLVSGY 476
           S    +G  +G+L+ +T +        ++    G  + E          +  F   +S  
Sbjct: 435 SDIDLIGFTNGVLNTKTHEFRPHNANDWLLHQNGITYTEPAAGENLKDNAPNFTAWLSHV 494

Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
               E         + M     +  Q FI   GVGGSGKS   ++ +   G     + + 
Sbjct: 495 SGGDEAKARRIKAGLYMVFANRHDWQLFIEATGVGGSGKSVFAHIAELLAGKHNTSSGDL 554

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +   R            + +G +++++ +  +     A  +K +TGGD +     Y  
Sbjct: 555 KALDDARGR---------AQFVGKKLILLPDQPKYVGDGAG-LKAITGGDPVGIDPKYEK 604

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTL 653
            +S        F+  N+ +      +   RR ++  F++ ++   +D +  +K++     
Sbjct: 605 QFS-MVMKSVVFMTGNRPMQFTERSNGVGRRRVIFHFNETVSEDKKDKNLPEKIQ-AEIP 662

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQAWIDDC---- 700
              +  L+          +   P+   K   E+R         + TD+   +   C    
Sbjct: 663 VIIRDLLR----------EFPNPDTANKLLIEQRGSGEAVDVKRETDSLIDF---CAYLV 709

Query: 701 -CDIGENLW---------EESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKG 746
             +  E ++              L  +Y  Y +   N  R  ++  T        LK+ G
Sbjct: 710 ALERVEGMFMGNANISPPAPRKYLYHAYMAYMQGNGN--RNPLTLTTFGRSIDGALKELG 767

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
                      K++   R  +G++       ++
Sbjct: 768 -----------KKYIKDRFTQGVRTNLELNELE 789


>gi|320662430|gb|EFX29819.1| Alpha replication protein of prophage CP-933I [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 777

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 72/531 (13%), Positives = 149/531 (28%), Gaps = 101/531 (19%)

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323
            W+  D          R     +           +  + F+        + +   YK   
Sbjct: 290 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 346

Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
                + +   + +     +              +      DV  L +            
Sbjct: 347 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 381

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443
                   R      ++K  S  ++L+      I     + + + +G ++G+LD  TG  
Sbjct: 382 --------RLDAPFSSAKIASLVENLK-----LIVPQQQNPARQLIGFRNGVLDTRTGLF 428

Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495
               K+ ++       + +          +  F   +      + E  D     + M L 
Sbjct: 429 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 488

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
                Q F+ + G GGSGKS L  +     G     +A    +   R             
Sbjct: 489 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 539

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L+G  ++ + +  +     A  +K +TGGD ++    Y N YS          V N  + 
Sbjct: 540 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 597

Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
             +      RR +++ F   I    RD    +K+         +  ++            
Sbjct: 598 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 646

Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712
             P       + +         ++  D+   +     ++  +              +   
Sbjct: 647 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 705

Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
            L  +Y  Y E     N     +  + + L LK+ G     +R     +  
Sbjct: 706 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 756


>gi|291281168|ref|YP_003497986.1| Alpha replication protein of prophage CP-933I [Escherichia coli
           O55:H7 str. CB9615]
 gi|290761041|gb|ADD55002.1| Alpha replication protein of prophage CP-933I [Escherichia coli
           O55:H7 str. CB9615]
          Length = 796

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 72/531 (13%), Positives = 149/531 (28%), Gaps = 101/531 (19%)

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323
            W+  D          R     +           +  + F+        + +   YK   
Sbjct: 309 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 365

Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
                + +   + +     +              +      DV  L +            
Sbjct: 366 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 400

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443
                   R      ++K  S  ++L+      I     + + + +G ++G+LD  TG  
Sbjct: 401 --------RLDAPFSSAKIASLVENLK-----LIVPQQQNPARQLIGFRNGVLDTRTGLF 447

Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495
               K+ ++       + +          +  F   +      + E  D     + M L 
Sbjct: 448 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 507

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
                Q F+ + G GGSGKS L  +     G     +A    +   R             
Sbjct: 508 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 558

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L+G  ++ + +  +     A  +K +TGGD ++    Y N YS          V N  + 
Sbjct: 559 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 616

Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
             +      RR +++ F   I    RD    +K+         +  ++            
Sbjct: 617 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 665

Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712
             P       + +         ++  D+   +     ++  +              +   
Sbjct: 666 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 724

Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
            L  +Y  Y E     N     +  + + L LK+ G     +R     +  
Sbjct: 725 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 775


>gi|161505697|ref|YP_001572809.1| hypothetical protein SARI_03873 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867044|gb|ABX23667.1| hypothetical protein SARI_03873 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 777

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 111/370 (30%), Gaps = 58/370 (15%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  TG      K  ++       F            + +F   +     
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKAHWLRTLCDVDFTPPVEGETLETHAPDFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
             +E  D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 471 GRQEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + I    RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLKNKIAR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704
            +  ++              P       + +         ++  D    +    +     
Sbjct: 639 VRQLMQ----------KFSDPMAARTLLQSQQNSDEALSIKRDADPTFDFCGYLEALPEP 688

Query: 705 ENLWE---------ESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGI 751
           E ++              L  +Y  Y E      R  +S           LK+ G     
Sbjct: 689 EGMYIGNANIIPRQPRLYLYHAYLAYMEAHGY--RNTLSLTMFGKGLPAMLKEYGLSYEK 746

Query: 752 KREKIEKEWK 761
           +R+    +  
Sbjct: 747 RRKNQGIQTN 756


>gi|320656999|gb|EFX24834.1| alpha replication protein of prophage CP-933I [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 777

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/531 (13%), Positives = 148/531 (27%), Gaps = 101/531 (19%)

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323
            W+  D          R     +           +  + F+        + +   YK   
Sbjct: 290 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 346

Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
                + +   + +     +              +      DV  L +            
Sbjct: 347 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 381

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443
                   R      ++K  S  ++L+      I     + + + +G ++G+ D  TG  
Sbjct: 382 --------RLDAPFSSAKIASLVETLK-----LIVPQQQNPARQLIGFRNGVFDTRTGLF 428

Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495
               K+ ++       + +          +  F   +      + E  D     + M L 
Sbjct: 429 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 488

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
                Q F+ + G GGSGKS L  +     G     +A    +   R             
Sbjct: 489 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 539

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L+G  ++ + +  +     A  +K +TGGD ++    Y N YS          V N  + 
Sbjct: 540 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 597

Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
             +      RR +++ F   I    RD    +K+         +  ++            
Sbjct: 598 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 646

Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712
             P       + +         ++  D+   +     ++  +              +   
Sbjct: 647 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 705

Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
            L  +Y  Y E     N     +  + + L LK+ G     +R     +  
Sbjct: 706 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 756


>gi|325959878|ref|YP_004291344.1| phage/plasmid primase, P4 family [Methanobacterium sp. AL-21]
 gi|325331310|gb|ADZ10372.1| phage/plasmid primase, P4 family [Methanobacterium sp. AL-21]
          Length = 584

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/433 (15%), Positives = 142/433 (32%), Gaps = 27/433 (6%)

Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE-EPEDNNKNSKSPRFWFNTDYRR 393
           K      +   +   +   +++     +      + + E  D     +S   +   D ++
Sbjct: 156 KYSSIFKFEKDIKRSEKEQALLELYKHINTKYNIIIDKESYDLCIYDESEGIYKAYDEKK 215

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
            +              E   +  + +++ +     +   + ++++ET +  K    ++  
Sbjct: 216 FSRFLKKVVGKEFFVDEVKKLMGLFNEIKEEDPNHVAFNNCLMNIETLETRKFDPNIFTR 275

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
                 +     S  F + +   F+       F + VG     GN   +   + G G +G
Sbjct: 276 FKVPYNWNPSADSPFFKEKICEIFDDPGKFQTFLQIVGYLFAKGNPHNKLFLLMGKGANG 335

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KS LM +I   F N                 +  + +  L  L+G R+ ++S+       
Sbjct: 336 KSLLMQIISAIFINSSAAVP----------LQDFQKDFGLQPLIGKRVNLLSDLPIATIE 385

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
              +IK +TGGD +T    + +  +            N+   + +   A WRR ++I  +
Sbjct: 386 ETGQIKAITGGDDITINRKFKDPLTT-KLKCKIVGAGNRLPKIMDDSYALWRRIVIIKLE 444

Query: 634 KPIAN--RDASFAQKLETK-YTLE--AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           K      RD    +KL      +E       ++  K     G   D         EE  +
Sbjct: 445 KTFDGDSRDTKLTEKLLNDTEGMEWFIFN-AIQAYKKIRETGWTEDTYREIR---EEAIK 500

Query: 689 GTDTYQAWIDD---CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            +D    +  +         + +     +  S +++  +     R   +       +K+ 
Sbjct: 501 NSDP-ALYASEQLFEVTDSPDNFLTRKEIVDSINDFLIEHDL--RIPANKSEYYDAVKKC 557

Query: 746 GFIGGIKREKIEK 758
           G   G KR   EK
Sbjct: 558 GAKEGQKRILEEK 570


>gi|194442419|ref|YP_002042010.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194401082|gb|ACF61304.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 777

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/405 (16%), Positives = 122/405 (30%), Gaps = 63/405 (15%)

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
            R +    + K  S  ++L+       T        R +G ++G+LD  TG      K  
Sbjct: 381 QRLRAPFSSGKIASVVETLKLIIPQQDTPA-----RRLIGFRNGVLDTATGTFSPHHKSH 435

Query: 451 YITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQR 502
           ++       F            + +F   +       +E  D     + M L      Q 
Sbjct: 436 WLRTLCDVDFTPPVEGETLETHAPDFWRWLDRAAGGRQEKRDVILAALFMVLANRYDWQL 495

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
           F+ + G GGSGKS L  +     G     +A    +   R             L+G  ++
Sbjct: 496 FLEVTGPGGSGKSILAEIATMLAGEDNATSATIETLESPR---------ERAALIGFSLI 546

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
            + +  +     A  +K +TGGD ++    Y + YS          V N  +   +    
Sbjct: 547 RLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAYSTHIP-AVILAVNNNPMRFTDRSGG 604

Query: 623 WWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
             RR +++ F + IA   RD     K+         +  ++              P    
Sbjct: 605 VSRRRVILHFPEQIAPDERDPQLKNKIAR-ELAVIVRQLMQ----------KFSDPMTAR 653

Query: 681 KAKEEE---------RQGTDTYQAWID--DCCDIGENLWE---------ESHSLAKSYSE 720
              + +         ++  D    +    +     E ++              L  +Y  
Sbjct: 654 ALLQSQQNSDEALSIKREADPTFDFCGYLEALPEPEGMYIGNASIIPRQPRLYLYHAYLA 713

Query: 721 YREQELNYDRKRISTRTVTL----NLKQKGFIGGIKREKIEKEWK 761
           Y E      R  +S           LK+ G     +R+    +  
Sbjct: 714 YMEAHGY--RNTLSLTMFGKGLPAMLKEYGLSYEKRRKNQGIQTN 756


>gi|253687111|ref|YP_003016301.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753689|gb|ACT11765.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 775

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/441 (15%), Positives = 127/441 (28%), Gaps = 62/441 (14%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           E  F                R       +       S   S   +L+             
Sbjct: 354 ETFFQYQNGAWKVLSYRLLSRDIAALFQKIHAPFTASGIGSVLDTLKLIIPMQEKP---- 409

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGY 476
              R +G ++G+ D  +GQ     +E ++       +          + +  F   ++  
Sbjct: 410 -QRRLIGFRNGVFDTASGQFKPHRREHWLNTVNDVDYTPFKAGENLADNAPHFWRWLTRA 468

Query: 477 FES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
             +  +  +     + M L      Q F+ + G GGSGKS L  +     G      A  
Sbjct: 469 AGNSADKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATI 528

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
           + I  +R   +         ++G  ++++ +  +     A  IK +TGGD +     Y +
Sbjct: 529 NTIESSRERSS---------IIGFSLIVLPDQEKWSGDGAG-IKAITGGDAVMVDPKYRD 578

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653
            YS          V N  +   +      RR ++I F + I    RD    +K+      
Sbjct: 579 AYSTRIP-AVILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKI-RAELA 636

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAWIDDCCDIG 704
              +  +K              P       +         E ++  D    +       G
Sbjct: 637 VIVRHLMK----------RFADPNDARTLLQAQQHSAEALEIKRQADPLVDFCGYLLAHG 686

Query: 705 ENL-----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
           +                   L  +Y  + E   +  +K IS       L     +    +
Sbjct: 687 DTTGLYMGNANITPRNPRKYLYHAYLSFMESHGH--QKPISLTAFGKVLPN--MMSEYGQ 742

Query: 754 EKIEKEWKSKRIIKGLKLKPA 774
             ++       I   L+LK  
Sbjct: 743 TYLKGRTNQG-IQTNLELKDE 762


>gi|300172883|ref|YP_003772048.1| poxvirus D5 protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887261|emb|CBL91229.1| poxvirus D5 protein, putative [Leuconostoc gasicomitatum LMG 18811]
          Length = 467

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/431 (14%), Positives = 132/431 (30%), Gaps = 46/431 (10%)

Query: 326 YTADTKAWYKKDKN-NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384
           + A    +Y  + N   Y+++    K   ++     ++   V  L               
Sbjct: 43  FVAKETHFYTDNNNLAGYLFNGQYWKRYKNVKQADNALSSRVATL--------------- 87

Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD-LLDSSSRFLGEQDGILDLETGQK 443
                  + + +    + K+    +   ++  +            +   +G LD+ T + 
Sbjct: 88  -----LKQNKKLTSAKQVKNIVDLIRVITVKDVADYIDFTDKPYMVSFTNGTLDMRTLEI 142

Query: 444 VKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN-KAQ 501
                + +       P  + + P+ +  +  +      E  +   + +G          Q
Sbjct: 143 KPNAPQYHALGGLDYPVSDKDLPTPKTDEFFTRLLGD-ENAELLYKFIGYGFKRNYLPFQ 201

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
            F+ + G GG+GK T +  I     +  V                         L+G   
Sbjct: 202 NFVILYGKGGNGKGTALTYIGQKLYSGNVSELSLQAFGDKFKTVG---------LVGKYA 252

Query: 562 VIISETNENDEINAAKIK-QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
            I S+   N   N   +K  ++G +           +S      T F   N    +R  D
Sbjct: 253 NIGSDIPANYMPNTENLKLAVSGKEKFEVESKGVQAFS-IVNYATLFFSANDLPNIR-RD 310

Query: 621 DAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
               RR +V+      F       D  F +           +  +K           ++I
Sbjct: 311 SGLDRRPLVLTTQGKGFTNADGKSDL-FDESELLDERPAFTRKVIKMFMDAERAR-TLNI 368

Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
           PE   KA  +  +  D    W+D+  +  ++    +  + + +S  R+ E    ++ I+ 
Sbjct: 369 PENVQKATADWLKSADIVSQWLDEHTEEEKDRRPTAKYMYQQFS--RDIEDMGMQETINR 426

Query: 736 RTVTLNLKQKG 746
            T    ++  G
Sbjct: 427 NTFYSRMENLG 437


>gi|170022873|ref|YP_001719378.1| P4 family phage/plasmid primase [Yersinia pseudotuberculosis YPIII]
 gi|169749407|gb|ACA66925.1| phage/plasmid primase, P4 family [Yersinia pseudotuberculosis
           YPIII]
          Length = 477

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 72/482 (14%), Positives = 149/482 (30%), Gaps = 74/482 (15%)

Query: 320 KKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379
           +    L   D       D + V+ ++  + +  +               LS E       
Sbjct: 36  RGEVLLARYDGDLAVHGDSDAVHHYNGIIWQPVSD------------KALSREMAAIFIE 83

Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439
           S+ P                   K+   +++       T     ++   +G  +G+ D  
Sbjct: 84  SRIPYSM-------------PAMKNAVDTMKLSLPIMGT-----TARNLIGFSNGVFDTR 125

Query: 440 TGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVG 491
            G   +  +E ++  ++   F++ E        S  F   ++     +    D     + 
Sbjct: 126 EGLFREHRQEDWLLIASDVEFIQAEEGESLDTHSPAFWKWLNWSTAGNARKTDRVLAALY 185

Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
           M +      Q F+ I G GGSGKS L  +     G    ++A    + + R         
Sbjct: 186 MVMANRYDWQLFLEITGAGGSGKSVLAEICTMLAGKANTVSASMKALEEPR--------- 236

Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
               ++G  ++I+ + +      A  IK +TGGD +     +   YS          V N
Sbjct: 237 ERALIVGYSLIIMPDMSRYAGDGAG-IKAITGGDKVAIDPKHKPPYSTRIP-AVILAVNN 294

Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
             +   +      RR ++  F + +    RD   ++K+E        +  L         
Sbjct: 295 NAMSFSDRSGGISRRRVIFNFSQVVPENERDPMLSEKIE-AELPVIIRHLLTRFADQGEA 353

Query: 670 GLDVDIPEVCLKAKEEERQGTDTY--------------QAWIDDCCDIGENLWEESHSLA 715
              +   +   +A    ++  D+                 +I +   I    +     L 
Sbjct: 354 KRLLFEQQKSEEALAI-KREGDSLVDFCGYLMASVQCDGLFIGNASII---PFSPRKYLY 409

Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
            +Y  Y +       K IS      ++   G +    +E I K+     +   ++L    
Sbjct: 410 HAYLAYMQSNGLS--KPISLNRFATDMP--GSMAEYGKEYIRKKSTKGNMRSNIRLADDA 465

Query: 776 ES 777
           + 
Sbjct: 466 DE 467


>gi|218442562|ref|YP_002380883.1| primase [Cyanothece sp. PCC 7424]
 gi|218175333|gb|ACK74064.1| Primase 2 [Cyanothece sp. PCC 7424]
          Length = 305

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 88/289 (30%), Gaps = 43/289 (14%)

Query: 18  FKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK-----------------LP--ACGFGFVC 58
           + LIP+ L  K+P     W+   L+ +++                    P    G G + 
Sbjct: 23  WPLIPVSLN-KQPIGSQ-WQNHPLTRDQLITNLTQRGYIVVLNKKSQFYPIRPPGIGILL 80

Query: 59  GVGEQP-LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK----EGI 113
           G  ++  L A D+D                L  T     G+  +    F++      +  
Sbjct: 81  GHNKREFLIALDVDGDSAIAYLH--RLIPSLPRTVAFTSGRLGRCQYLFKLPSNQSIKPF 138

Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
           K           L+I   GQ  V     HP T + Y W    +  +V       E     
Sbjct: 139 KVITGPGEA---LEIRSTGQQSVLPPSPHPLTGQYY-WVGGCNPNEVNVALAPPE----- 189

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
           L    Q  +           P  +         +     + L+C    + +  +D WI +
Sbjct: 190 LITLSQSHSSKKKIQATDNNPFVSPVRGK-LTTSIEAALSALACIHPSYADE-YDSWIRI 247

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
            M++H     S         WS+  + Y     +YKW +F    I    
Sbjct: 248 GMSLHSI---SYSLLHDWDSWSQSSAKYKPGECHYKWASFKGSGISART 293


>gi|23097625|ref|NP_691091.1| primase [Oceanobacillus iheyensis HTE831]
 gi|22775848|dbj|BAC12126.1| primase [Oceanobacillus iheyensis HTE831]
          Length = 619

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 101/332 (30%), Gaps = 26/332 (7%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF----------VEGEPSQEFLDLV 473
                    +GI D +T Q +    +          +                 +    +
Sbjct: 221 KERHLFAVNNGIYDQKTRQLMPFNPKYVYLTKIPVEYKAHPINPVKTSPDGYQWDVESWL 280

Query: 474 SGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVI 531
               +          + +   L       + I      G +GK T+  LIK   G     
Sbjct: 281 REIMDNDAGSTTLMWQVIADCLQPNYSRHKSIWFYSEKGNNGKGTVGQLIKNLLGKGNYA 340

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTAR 590
           +   +D        +         L+     I  E + +  I++ K  K    GD +   
Sbjct: 341 SLSVADFNHEFLKSS---------LVNVAANIADENDVDIYIDSVKDYKASVTGDDININ 391

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
           + YG        + +   + N     ++  ++++RR I++PF K   N       K +  
Sbjct: 392 IKYGQP-LRIQFNGSNIQMMNGLPKTKDKSESFYRRIILVPFLKSFTNNGERTYIKDDYI 450

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
              E  ++ L   KA      +  +P    +  +  R+  ++   + ++  +        
Sbjct: 451 NQQEVLEYVL--HKALNMDFDEFIVPARSAELLDCYREKNNSVMEFWNELKEEFVWDLLP 508

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
           +  L   Y ++ E   N   K +  RT    L
Sbjct: 509 TDFLYAIYEKWSEMN-NPSGKLMGKRTFKDTL 539


>gi|313884355|ref|ZP_07818117.1| nucleoside triphosphatase, D5 family [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312620433|gb|EFR31860.1| nucleoside triphosphatase, D5 family [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 619

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 112/332 (33%), Gaps = 20/332 (6%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----------LDL 472
                +   + + + ET Q++  + +        T   E  PS  +           LD 
Sbjct: 203 DDPNIIALNNTLFNYETKQRIPFSPDYVFLSKLSTNLAESPPSIPYHIKPDGTRINPLDW 262

Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           ++    +++++           +      ++   +   G +GKST + +I    G   V+
Sbjct: 263 INELAADNQKLSQALLVIACACVRPKWIWRQMALLYNSGKNGKSTFLEMINALVGEGNVM 322

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTAR 590
            +   D+        G    +L  ++G  +V+  +++ N  I N  K+K +     +   
Sbjct: 323 PSSLEDLSN----TDGAGRFALAGIVGKSLVLCDDSDTNTYIRNTRKLKTLIAHGTIAVE 378

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
               N +S            N     R+   AW  R +++PF       +     +   K
Sbjct: 379 RKGENMFS-YRPLIFLLAAANDLPKSRDKSQAWLDRLVLVPFPARFDGEEDDKLIQPWVK 437

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
              E  ++ L  +   + K  ++  P      KEE     D    +  +        +  
Sbjct: 438 SR-EFSEYMLYHLLVEMDKVYELLEPSDSKALKEEYVMENDPVVEFYHEYIANSHEDFLA 496

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
           +  L + ++ + +Q    +   +S RT    L
Sbjct: 497 NCYLWELFNWWLKQN-RPNTSVMSNRTFIKRL 527


>gi|22127140|ref|NP_670563.1| phage DNA primase [Yersinia pestis KIM 10]
 gi|21960200|gb|AAM86814.1|AE013927_12 putative phage DNA primase [Yersinia pestis KIM 10]
          Length = 697

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 63/445 (14%), Positives = 129/445 (28%), Gaps = 52/445 (11%)

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           +  E V+   +E  D   +    R               +  ++  ++++          
Sbjct: 266 AESETVYHYDDERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPP 325

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLV 473
                   +G Q+G+ DL+  Q        ++       F E +P          F   +
Sbjct: 326 -----RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWL 380

Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           +     E   M      + M L      Q F+ + G GGSGKS    +     G Q   +
Sbjct: 381 AHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTAS 440

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARL 591
              + + Q R            + +G  +  I+  ++   +     IK +TGGD +    
Sbjct: 441 GNMAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDG 489

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETK 650
            Y   +S    +       N+ +          RR ++  F+ P+   D      +    
Sbjct: 490 KYEKQFSTLL-TAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAA 548

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----- 705
                 +  L            +       +A    ++  D    +     ++GE     
Sbjct: 549 ELPVVIRCLLAEFADQDKARKLLLEQRDSREAMG-VKRDADPLYGFCAHIVELGEAVGMY 607

Query: 706 ------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIE 757
                 +       L  +Y  Y E   +     ++   +     +++ G           
Sbjct: 608 MGTLAISPHAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMEEFG----------- 656

Query: 758 KEWKSKRIIKGLKLKPAFESVDDNS 782
            E+K  R  KG +         ++ 
Sbjct: 657 AEYKKARTDKGFRYNMDLSDTANDW 681


>gi|45443313|ref|NP_994852.1| putative primase [Yersinia pestis biovar Microtus str. 91001]
 gi|108806389|ref|YP_650305.1| putative primase [Yersinia pestis Antiqua]
 gi|108813239|ref|YP_649006.1| primase [Yersinia pestis Nepal516]
 gi|145597941|ref|YP_001162017.1| primase [Yersinia pestis Pestoides F]
 gi|150260107|ref|ZP_01916835.1| putative primase [Yersinia pestis CA88-4125]
 gi|162420203|ref|YP_001608164.1| D5 family nucleoside triphosphatase [Yersinia pestis Angola]
 gi|165925009|ref|ZP_02220841.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937310|ref|ZP_02225874.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010215|ref|ZP_02231113.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212650|ref|ZP_02238685.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399750|ref|ZP_02305268.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418869|ref|ZP_02310622.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425328|ref|ZP_02317081.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467327|ref|ZP_02332031.1| nucleoside triphosphatase, D5 family protein [Yersinia pestis FV-1]
 gi|218928055|ref|YP_002345930.1| putative primase [Yersinia pestis CO92]
 gi|229837566|ref|ZP_04457728.1| putative primase [Yersinia pestis Pestoides A]
 gi|229840789|ref|ZP_04460948.1| putative primase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842652|ref|ZP_04462807.1| putative primase [Yersinia pestis biovar Orientalis str. India 195]
 gi|229903695|ref|ZP_04518808.1| putative primase [Yersinia pestis Nepal516]
 gi|270487473|ref|ZP_06204547.1| nucleoside triphosphatase, D5 family [Yersinia pestis KIM D27]
 gi|294502949|ref|YP_003567011.1| putative primase [Yersinia pestis Z176003]
 gi|45438181|gb|AAS63729.1| putative primase [Yersinia pestis biovar Microtus str. 91001]
 gi|108776887|gb|ABG19406.1| plasmid and phage DNA primase [Yersinia pestis Nepal516]
 gi|108778302|gb|ABG12360.1| plasmid and phage DNA primase [Yersinia pestis Antiqua]
 gi|115346666|emb|CAL19549.1| putative primase [Yersinia pestis CO92]
 gi|145209637|gb|ABP39044.1| plasmid and phage DNA primase [Yersinia pestis Pestoides F]
 gi|149289515|gb|EDM39592.1| putative primase [Yersinia pestis CA88-4125]
 gi|162353018|gb|ABX86966.1| nucleoside triphosphatase, D5 family [Yersinia pestis Angola]
 gi|165914784|gb|EDR33397.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923209|gb|EDR40360.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990701|gb|EDR43002.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205942|gb|EDR50422.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962863|gb|EDR58884.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050458|gb|EDR61866.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055728|gb|EDR65512.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229679465|gb|EEO75568.1| putative primase [Yersinia pestis Nepal516]
 gi|229690962|gb|EEO83016.1| putative primase [Yersinia pestis biovar Orientalis str. India 195]
 gi|229697155|gb|EEO87202.1| putative primase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229704254|gb|EEO91265.1| putative primase [Yersinia pestis Pestoides A]
 gi|262360984|gb|ACY57705.1| putative primase [Yersinia pestis D106004]
 gi|262364924|gb|ACY61481.1| putative primase [Yersinia pestis D182038]
 gi|270335977|gb|EFA46754.1| nucleoside triphosphatase, D5 family [Yersinia pestis KIM D27]
 gi|294353408|gb|ADE63749.1| putative primase [Yersinia pestis Z176003]
 gi|320014044|gb|ADV97615.1| putative primase [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 763

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 63/445 (14%), Positives = 129/445 (28%), Gaps = 52/445 (11%)

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           +  E V+   +E  D   +    R               +  ++  ++++          
Sbjct: 332 AESETVYHYDDERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPP 391

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLV 473
                   +G Q+G+ DL+  Q        ++       F E +P          F   +
Sbjct: 392 -----RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWL 446

Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           +     E   M      + M L      Q F+ + G GGSGKS    +     G Q   +
Sbjct: 447 AHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTAS 506

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARL 591
              + + Q R            + +G  +  I+  ++   +     IK +TGGD +    
Sbjct: 507 GNMAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDG 555

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETK 650
            Y   +S    +       N+ +          RR ++  F+ P+   D      +    
Sbjct: 556 KYEKQFSTLL-TAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAA 614

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----- 705
                 +  L            +       +A    ++  D    +     ++GE     
Sbjct: 615 ELPVVIRCLLAEFADQDKARKLLLEQRDSREAMG-VKRDADPLYGFCAHIVELGEAVGMY 673

Query: 706 ------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIE 757
                 +       L  +Y  Y E   +     ++   +     +++ G           
Sbjct: 674 MGTLAISPHAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMEEFG----------- 722

Query: 758 KEWKSKRIIKGLKLKPAFESVDDNS 782
            E+K  R  KG +         ++ 
Sbjct: 723 AEYKKARTDKGFRYNMDLSDTANDW 747


>gi|300724899|ref|YP_003714224.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
 gi|297631441|emb|CBJ92138.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
          Length = 804

 Score =  143 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 80/612 (13%), Positives = 173/612 (28%), Gaps = 64/612 (10%)

Query: 203 RQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
             Y      + L   G           + V   V  +   S         W KQG     
Sbjct: 215 EGYATALTVSQLHHDGTVLAAIDESNLLNVAELVRTQWPESKIILAADNDWHKQGEKDKS 274

Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFT-SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
                       ++         T   +          +         A++  ++ + +K
Sbjct: 275 GKLKKNVGKIAADKAAKAINGWVTLPPTEHKADWDDYRQHHGIEAAKQAFSNGLYQVGEK 334

Query: 322 G--HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK-----EDVFDLSEEPE 374
                      +   KK  NN+   + +  +  A ++     +      E V+  +    
Sbjct: 335 KLMEAEAVVIHETKPKKATNNLAQMAAS--QRGALLVEHYKKIAVHAESEAVYHYNGTTW 392

Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
           +   +++  R       +       +   +   +++            +  S  +G  +G
Sbjct: 393 ETVSDNELRRAMVAIFDQHDTPYSPNGINNAISAMKLQIPVIG-----EQRSDLIGFSNG 447

Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGE-------PSQEFLDLVSGYFE-SEEVMDYF 486
           +  L T Q      E ++    G  F +          + +F   +S     +E  M+  
Sbjct: 448 VYALSTQQFTPHQPEHWLMNHNGIEFTQPAIGENLSDHAPDFYRWLSHAAGQNENKMNRI 507

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
              + M L      Q FI + G GGSGKS    +     G     +     + + R    
Sbjct: 508 KAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASGNMRALDEARGR-- 565

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFT 605
                   + +G  +  I+  ++   +     IK +TGGD +     Y   +S       
Sbjct: 566 -------YQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLIEVDGKYEKQFSTII-KAV 615

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL-KG 662
                N+ +     +    RR ++ PF+ P+    +D    +K+         +  L + 
Sbjct: 616 VLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKISR-ELPVIIRHLLTEF 674

Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL------------WEE 710
                +K L     +         + G+D    +       GE+                
Sbjct: 675 ADQNKAKKLLQAQRDSSEALT--VKCGSDPLYRFCG-YLVSGEDTAGMKMGNKNISPRAP 731

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
              L  +Y  + E       + ++      ++ +         ++  K+++  R  KG  
Sbjct: 732 RMYLYHAYLSFMEAYGF--ERPLTLTKFGESMPKIM-------QEHRKDYQKVRTKKGYS 782

Query: 771 LKPAFESVDDNS 782
                    +  
Sbjct: 783 YHVELSEDAEEW 794


>gi|186896546|ref|YP_001873658.1| P4 alpha zinc-binding domain-containing protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|186699572|gb|ACC90201.1| P4 alpha zinc-binding domain protein [Yersinia pseudotuberculosis
           PB1/+]
          Length = 763

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/445 (14%), Positives = 128/445 (28%), Gaps = 52/445 (11%)

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           +  E V+    E  D   +    R               +  ++  ++++          
Sbjct: 332 AESETVYHYDGERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPP 391

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLV 473
                   +G Q+G+ DL+  Q        ++       F E +P          F   +
Sbjct: 392 -----RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWL 446

Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           +     E   M      + M L      Q F+ + G GGSGKS    +     G Q   +
Sbjct: 447 AHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTAS 506

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARL 591
              + + Q R            + +G  +  I+  ++   +     IK +TGGD +    
Sbjct: 507 GNMAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDG 555

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETK 650
            Y   +S    +       N+ +          RR ++  F+ P+   D      +    
Sbjct: 556 KYEKQFSTLL-TAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAA 614

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----- 705
                 +  L            +       +A    ++  D    +     ++GE     
Sbjct: 615 ELPVVIRCLLAEFADQDKARKLLLEQRDSREAMG-VKRDADPLYGFCAHIVELGEAVGMY 673

Query: 706 ------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIE 757
                 +       L  +Y  Y E   +     ++   +     +K+ G           
Sbjct: 674 MGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKEFG----------- 722

Query: 758 KEWKSKRIIKGLKLKPAFESVDDNS 782
            E+K  R  KG +         ++ 
Sbjct: 723 AEYKKARTDKGFRYNMDLSDTANDW 747


>gi|153949355|ref|YP_001399874.1| D5 family nucleoside triphosphatase [Yersinia pseudotuberculosis IP
           31758]
 gi|152960850|gb|ABS48311.1| nucleoside triphosphatase, D5 family [Yersinia pseudotuberculosis
           IP 31758]
          Length = 763

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/445 (14%), Positives = 128/445 (28%), Gaps = 52/445 (11%)

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           +  E V+    E  D   +    R               +  ++  ++++          
Sbjct: 332 AESETVYHYDGERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPP 391

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLV 473
                   +G Q+G+ DL+  Q        ++       F E +P          F   +
Sbjct: 392 -----RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWL 446

Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           +     E   M      + M L      Q F+ + G GGSGKS    +     G Q   +
Sbjct: 447 AHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTAS 506

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARL 591
              + + Q R            + +G  +  I+  ++   +     IK +TGGD +    
Sbjct: 507 GNMAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDG 555

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETK 650
            Y   +S    +       N+ +          RR ++  F+ P+   D      +    
Sbjct: 556 KYEKQFSTLL-TAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAA 614

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----- 705
                 +  L            +       +A    ++  D    +     ++GE     
Sbjct: 615 ELPVVIRCLLAEFADQDKARKLLLEQRDSREAMG-VKRDADPLYGFCAHIVELGEAVGMY 673

Query: 706 ------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIE 757
                 +       L  +Y  Y E   +     ++   +     +K+ G           
Sbjct: 674 MGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKEFG----------- 722

Query: 758 KEWKSKRIIKGLKLKPAFESVDDNS 782
            E+K  R  KG +         ++ 
Sbjct: 723 AEYKKARTDKGFRYNMDLSDTANDW 747


>gi|227113527|ref|ZP_03827183.1| hypothetical protein PcarbP_11212 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 775

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/441 (15%), Positives = 129/441 (29%), Gaps = 62/441 (14%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           E  F                R       +       S   S   +L    I  +    L 
Sbjct: 354 ETFFQYQNGAWKVLPYRLLSRDIAALFQKIHAPFTASGIGSVLDTL--KLIIPMQEKPL- 410

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGY 476
              R +G ++G+ D  +G+     +E ++       +          + +  F   ++  
Sbjct: 411 --RRLIGFRNGVFDTASGEFKPHRREHWLNTVNDVDYTPFKAGENLADNAPHFWRWLTRA 468

Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
              + +  +     + M L      Q F+ + G GGSGKS L  +     G      A  
Sbjct: 469 AGSNTDKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATI 528

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
           + I  +R   +         ++G  ++++ +  +     A  IK +TGGD +     Y +
Sbjct: 529 NTIESSRERSS---------IIGFSLIVLPDQEKWSGDGAG-IKAITGGDAVMVDPKYRD 578

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653
            YS          V N  +   +      RR ++I F + I    RD    +K+      
Sbjct: 579 AYSTRIP-AVILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKI-RAELA 636

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAWIDDCCDIG 704
              +  +K              P       +         E ++  D    +       G
Sbjct: 637 VIVRHLMK----------RFADPNDARTLLQAQQHSAEALEIKRQADPLVDFCGYLLAHG 686

Query: 705 ENL-----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
           +                   L  +Y  + E   +  +K IS       L     +    +
Sbjct: 687 DTTGLYMGNANITPRNPRKYLYHAYLSFMESHGH--QKPISLTAFGKVLPN--MMSEYGQ 742

Query: 754 EKIEKEWKSKRIIKGLKLKPA 774
             ++       I   L+LK  
Sbjct: 743 TYLKGRTNQG-IQTNLELKDE 762


>gi|323131092|gb|ADX18522.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 777

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 108/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  TG      K  ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR +++ F + I    RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLRDKIAR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P       + +         ++  D    +     +   +
Sbjct: 639 VRQLMQ----------KFSDPMTARTLLQSQQNSDEALSIKRDADPAFDFCG-YLEALPD 687

Query: 707 ------------LWEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                         +    L  +Y  Y E      R  +S           LK+ G    
Sbjct: 688 PDGMYIGNANIIPRQPRLYLYHAYLAYMEAHGY--RNTLSLTMFGKGLPAMLKEYGLSYE 745

Query: 751 IKREKIEKEWK 761
            +R+    +  
Sbjct: 746 KRRKNQGIQTN 756


>gi|301159308|emb|CBW18823.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
          Length = 794

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 108/371 (29%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  TG      K  ++       F            +  F   +     
Sbjct: 428 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAAG 487

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 488 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 547

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 548 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 597

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR +++ F + I    RD     K+        
Sbjct: 598 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLRDKIAR-ELAVI 655

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P       + +         ++  D    +     +   +
Sbjct: 656 VRQLMQ----------KFSDPMTARTLLQSQQNSDEALSIKRDADPAFDFCG-YLEALPD 704

Query: 707 ------------LWEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                         +    L  +Y  Y E      R  +S           LK+ G    
Sbjct: 705 PDGMYIGNANIIPRQPRLYLYHAYLAYMEAHGY--RNTLSLTMFGKGLPAMLKEYGLSYE 762

Query: 751 IKREKIEKEWK 761
            +R+    +  
Sbjct: 763 KRRKNQGIQTN 773


>gi|301022218|ref|ZP_07186133.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 69-1]
 gi|300397631|gb|EFJ81169.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 69-1]
          Length = 605

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/541 (13%), Positives = 162/541 (29%), Gaps = 86/541 (15%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E G+ A+K+           ++      +   +        + + + Y   
Sbjct: 112 ENWREYLERERGELAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 172 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 201

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 252

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
             +  K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 253 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 312

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS    +    +  N  +
Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 421

Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              +      RR ++  F + +    RD   A+K+E        +  L            
Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFANQDEARRL 480

Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721
           +   +   +A    ++  D+   +        + D   +G      +     L  +Y  Y
Sbjct: 481 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 539

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                    K ++      ++   G +    RE ++++ K      GL+         ++
Sbjct: 540 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 590

Query: 782 S 782
            
Sbjct: 591 W 591


>gi|21910875|ref|NP_665143.1| putative DNA primase - phage associated [Streptococcus pyogenes
           MGAS315]
 gi|28876421|ref|NP_795620.1| putative DNA primase [Streptococcus pyogenes phage 315.5]
 gi|21905081|gb|AAM79946.1| putative DNA primase - phage-associated [Streptococcus pyogenes
           MGAS315]
          Length = 292

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 89/266 (33%), Gaps = 16/266 (6%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +  +L G    ++ I   G G  GK T   +I    G + V   + +   +         
Sbjct: 1   MAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKNVAPLKLNQFSE--------- 51

Query: 550 NPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
              L  + G  ++I  +      ++  +    +  G+ ++      N Y       T   
Sbjct: 52  RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYMAI-FKKTVIQ 110

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
             N     +N  +  +RR I+IPF K  ++ + ++A K +     E  ++ L   K+   
Sbjct: 111 STNGMPVFKNKSNGTYRRIIIIPFKKTFSSAEDNWAIKDDYINRKEVLEYVL--WKSINL 168

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
                  P+V      E ++  +T   ++++  +  E+       L   Y  +  +    
Sbjct: 169 DFDKFYEPKVTQDRMREFKEENNTILKFLNEYLEDVESTRLPVRFLWDVYQSWCTENGVT 228

Query: 729 DRKRISTRTVTLNLKQKGFIGGIKRE 754
             K          L      G  K +
Sbjct: 229 KPK---KSNFEKELAINLPDGWEKTK 251


>gi|323935654|gb|EGB31971.1| phage/plasmid primase [Escherichia coli E1520]
          Length = 591

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/541 (13%), Positives = 161/541 (29%), Gaps = 86/541 (15%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E  + A+K+           ++      +   +        + + + Y   
Sbjct: 98  ENWREYLERERAELAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 157

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 158 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 187

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 188 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 238

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
             +  K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 239 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 298

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 299 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 349

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS    +    +  N  +
Sbjct: 350 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 407

Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              +      RR ++  F + +    RD   A+K+E        +  L            
Sbjct: 408 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFADQDEARRL 466

Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721
           +   +   +A    ++  D+   +        + D   +G      +     L  +Y  Y
Sbjct: 467 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 525

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                    K ++      ++   G +    RE ++++ K      GL+         ++
Sbjct: 526 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 576

Query: 782 S 782
            
Sbjct: 577 W 577


>gi|51597435|ref|YP_071626.1| phage primase [Yersinia pseudotuberculosis IP 32953]
 gi|51590717|emb|CAH22360.1| putative phage primase [Yersinia pseudotuberculosis IP 32953]
          Length = 763

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/446 (14%), Positives = 134/446 (30%), Gaps = 54/446 (12%)

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           +  E V+    E  D   +    R               +  ++  ++++          
Sbjct: 332 AESETVYHYDGERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPP 391

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLV 473
                   +G Q+G+ DL+  Q        ++       F E +P          F   +
Sbjct: 392 -----RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWL 446

Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           +     E   M      + M L      Q F+ + G GGSGKS    +     G Q   +
Sbjct: 447 AHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTAS 506

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARL 591
              + + Q R            + +G  +  I+  ++   +     IK +TGGD +    
Sbjct: 507 GNMAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDG 555

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETK 650
            Y   +S    +       N+ +          RR ++  F+ P+   D      +    
Sbjct: 556 KYEKQFSTLL-TAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAA 614

Query: 651 YTLEAKK-WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE---- 705
                 +   ++      ++ L ++  +   +A    ++  D    +     ++GE    
Sbjct: 615 ELPVVIRCLLVEFADQDKARKLLLEQRDS-REAMG-VKRDADPLYGFCAHIVELGEAVGM 672

Query: 706 -------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKI 756
                  +       L  +Y  Y E   +     ++   +     +K+ G          
Sbjct: 673 YMGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKEFG---------- 722

Query: 757 EKEWKSKRIIKGLKLKPAFESVDDNS 782
             E+K  R  KG +         ++ 
Sbjct: 723 -AEYKKARTDKGFRYNMDLSDTANDW 747


>gi|320177604|gb|EFW52594.1| DNA primase , phage-associated [Shigella boydii ATCC 9905]
          Length = 777

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/433 (15%), Positives = 122/433 (28%), Gaps = 65/433 (15%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           + +             S   R       R      + K  S  ++L+      I     +
Sbjct: 354 QLLSRYESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLK-----LIVPQQQN 408

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476
            S   +G ++G+LD  TG      KE ++       F            +  F   +   
Sbjct: 409 PSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRA 468

Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
                   D     + M L      Q F+ + G GGSGKS L  +     G+    +A  
Sbjct: 469 AGHKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGDDNATSATI 528

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y N
Sbjct: 529 ETLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 578

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653
            YS          V N  +   +      RR +++ F + I    RD     K+      
Sbjct: 579 AYSTHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELA 636

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIG 704
              +  ++              P       + +         ++  D    +     +  
Sbjct: 637 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEAL 685

Query: 705 ENL------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFI 748
            +              +    L  +Y  Y E      +  +S           LK+ G  
Sbjct: 686 PDTNGMFMGNANIVPRQPRTYLYHAYLVYMEANGF--KNTLSLTMFGKGLPVMLKEYGLN 743

Query: 749 GGIKREKIEKEWK 761
              +R     +  
Sbjct: 744 YEKRRTNQGMQTN 756


>gi|170016448|ref|YP_001727367.1| DNA primase [Leuconostoc citreum KM20]
 gi|169803305|gb|ACA81923.1| DNA primase [Leuconostoc citreum KM20]
          Length = 467

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/475 (12%), Positives = 139/475 (29%), Gaps = 60/475 (12%)

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
            S     +   G++    +   R ++     M + +   +             +    Y+
Sbjct: 17  PSWLDVQYNEAGEINKTTVNVERLAEYVA--METHFYTDN-------------NNLAGYL 61

Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
           ++    K   ++     ++   V  L                      + + +    + K
Sbjct: 62  FNGQYWKRYKNVKQADNALSSRVATL--------------------LKQHKKLTSAKQVK 101

Query: 404 STAQSLEAGSIFSITSD-LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
           +    +   ++  +            +   +G LD+ T +      + +       P  +
Sbjct: 102 NIVDLIRVITVKDVADYIDFTDKPYMVSFTNGTLDMRTLEIKPNAPQYHALGGLDYPVSD 161

Query: 463 GE-PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNL 520
            + P+ +  +  +      E  +   + +G          Q F+ + G GG+GK + +  
Sbjct: 162 KDLPTPKTDEFFTRLLGD-ENAELLYKFIGYGFKRNYLPFQNFVILYGKGGNGKGSALTY 220

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK- 579
           I     +  V                         L+G    I S+       N   +K 
Sbjct: 221 IGQQIYSGNVSELSLQAFGDKFKTVG---------LVGKYANIGSDIPSYYMPNTENLKL 271

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP-----FDK 634
            ++G +           +S      T F   N    ++  D    RR +V+      F  
Sbjct: 272 AVSGKERFELESKGVQAFS-IVNYATLFFSANDLPNIK-RDSGLDRRPLVVTTQGKGFTT 329

Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
                D  F +           +  +K           ++IPE   KA  E  +  D   
Sbjct: 330 KDGKSDF-FDEAELLDERPAFTRKVIKLFMDAERAK-TLNIPENVQKATAEWLKSADIVS 387

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
            W+D+  +  ++    +  + + +S  R+ E    ++ I+  T    ++  G   
Sbjct: 388 QWLDEHTEEAKDRRPTAKYMYQQFS--RDVEDMGMKETINRNTFYSRMEHLGIKS 440


>gi|168464122|ref|ZP_02698039.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195633563|gb|EDX51977.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 777

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 109/367 (29%), Gaps = 58/367 (15%)

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SE 480
           +G ++G+LD  TG      K  ++       F            +  F   +      + 
Sbjct: 414 IGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGEMLETHAPNFWRWLDRAAGKNP 473

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           +  D     + M L      Q F+ + G GGSGKS L  +     G     +A    +  
Sbjct: 474 QKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIETLES 533

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
            R             L+G  ++ + +  +     A  +K +TGGD ++    Y + YS  
Sbjct: 534 PR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAYSTH 583

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKW 658
                   V N  +   +      RR +++ F + I    RD     K+         + 
Sbjct: 584 IP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKNKIAR-ELAVIVRQ 641

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIGENL 707
            ++              P       + +         ++  D    +    +     E +
Sbjct: 642 LMQ----------KFSDPMTARALLQSQQNSDEALSIKRDADPTFDFCGYLEALPEPEGM 691

Query: 708 WE---------ESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIKRE 754
           +              L  +Y  Y E      R  +S           LK+ G     +R+
Sbjct: 692 YIGNANIIPRQPRLYLYHAYLAYMEAHGY--RNTLSLTMFGKGLPAMLKEYGLSYEKRRK 749

Query: 755 KIEKEWK 761
               +  
Sbjct: 750 NQGIQTN 756


>gi|313576893|gb|ADR67065.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp.
           pneumoniae]
          Length = 777

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 113/372 (30%), Gaps = 62/372 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  +G     +K  ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTSSGIFSPHSKSHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAS 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
            +    D     + M L      Q F+ + G GGSGKS L  +     G     +A+   
Sbjct: 471 RNPTKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSADIDT 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y N Y
Sbjct: 531 LEDPRKR---------ASLIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR ++I F + I    RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P       + +         ++  D    +    C   E 
Sbjct: 639 VRQLMQ----------QFSDPMSARALLQSQQNSDEALSIKRDADPTFDF----CGYLEA 684

Query: 707 LWEESH---------------SLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIG 749
           L E                   L  +Y  Y E     +   ++   + ++  LK+ G   
Sbjct: 685 LPEPDGMYMGNANIIPRQPRLYLYHAYLVYMEAHGYRNALSLTMFGKGLSAMLKEYGLNY 744

Query: 750 GIKREKIEKEWK 761
             +R     +  
Sbjct: 745 DKRRTNQGMQTN 756


>gi|301169147|emb|CBW28744.1| phage phi-r73 primase-like protein [Haemophilus influenzae 10810]
          Length = 589

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/422 (13%), Positives = 135/422 (31%), Gaps = 48/422 (11%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
            +++    +  +  +N              +    +S  +   ++L+A            
Sbjct: 177 REIYAYDGKTWNKQENDDLEEKAVKFLDENEFNYSDSTIERLIKTLKAQLPRMGEMSN-- 234

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF-ESEE 481
                +  ++G+L+  T +     ++ ++T      + +       F   +S     +++
Sbjct: 235 ---DLIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKQATDTPLFDKWLSFVSDGNKD 291

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
                   +   L      Q F  I G GGSGKS   ++     G +   ++        
Sbjct: 292 KARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDE 351

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
           R          L  L    +++  E ++     +  +K +TGGD +  R NY + + +  
Sbjct: 352 RG---------LSGLENKTLILCPEQSKYAGDGSG-LKSITGGDTVRVRYNYQDPF-DVK 400

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659
            +    ++ N+            RR ++  F K +    RD  F  K+         +  
Sbjct: 401 ITALVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITL-EVGGIIRKV 459

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQG------TDTYQAWI-----DDCCD------ 702
                       D +  +  LKA+ E ++       +D    +       +  D      
Sbjct: 460 FDSFH-------DPNDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLFIGV 512

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
               L +    L  +Y  Y +     +   +      + ++Q     G K + +++  K+
Sbjct: 513 TNMGLDKIRTHLYPAYLAYTKA---MNIGELGLNNFVIGVEQALKQNGNKHDFMKRHTKT 569

Query: 763 KR 764
            R
Sbjct: 570 GR 571


>gi|309796709|ref|ZP_07691114.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 145-7]
 gi|308119721|gb|EFO56983.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 145-7]
          Length = 774

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/431 (15%), Positives = 123/431 (28%), Gaps = 61/431 (14%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           + +             S   R       R      + K  S  ++L+      I     +
Sbjct: 351 QLLSRYESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLK-----LIVPQQQN 405

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476
            +   +G ++G+LD  TG      KE ++       F            +  F   +   
Sbjct: 406 PARHLIGFRNGVLDTRTGLFSPHCKENWLRTVCEVDFTPPVKGETLETHAPAFWRWLDRA 465

Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
                   D     + M L      Q F+ + G GGSGKS L  +     G     +A  
Sbjct: 466 AGHKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATI 525

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y N
Sbjct: 526 ETLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 575

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653
            YS          V N  +   +      RR +++ F + I    RD     K+      
Sbjct: 576 AYSTHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELA 633

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIG 704
              +  ++              P       + +         ++  D    +     +  
Sbjct: 634 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEAL 682

Query: 705 ENL------------WEESHSLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGG 750
            +              +    L  +Y  Y E     N     +  + + L LK+ G    
Sbjct: 683 PDTNGMFMGNANIVPRQPRTYLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYE 742

Query: 751 IKREKIEKEWK 761
            +R     +  
Sbjct: 743 KRRTNQGMQTN 753


>gi|227358324|ref|ZP_03842665.1| primase [Proteus mirabilis ATCC 29906]
 gi|227161660|gb|EEI46697.1| primase [Proteus mirabilis ATCC 29906]
          Length = 775

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/425 (15%), Positives = 130/425 (30%), Gaps = 43/425 (10%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            E V+   +   +   +S   R         +     +  K+   +L+            
Sbjct: 352 SEMVYHYVDGVWNKVSDSDLQRAMVAIFDEYETPYSPTGVKNAIGALKLQIPVLG----- 406

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLVSG 475
           +     +G  +G+ DL T Q      E ++    G  F   E +         F   +S 
Sbjct: 407 EQKRELIGFSNGVYDLSTQQFKPHAPENWLLNHNGIVFTAPESNENLKQHAPSFYKWLSH 466

Query: 476 YFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
                EE M+     + M L      Q FI + G GGSGKS   ++     G     +  
Sbjct: 467 SAGNDEEKMNRINAGLFMILANRYDWQLFIEVTGEGGSGKSVFTSIATLLAGAHNTASGN 526

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNY 593
              + + R            + +G  +  I+  ++   +     IK +TGGD +     Y
Sbjct: 527 MKALDEARGR---------YQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLIEVDGKY 575

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETKYT 652
              +S            N+ +     +    RR ++  F+ P+   D      +  +K  
Sbjct: 576 EKQFSTII-KAVVLATNNEPMSFTERNGGIARRRVIFSFNTPVKENDKDPLLPEKISKEL 634

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL----- 707
               +  LK         L +       +A    +  +D   ++      +GE L     
Sbjct: 635 PVIIRHLLKLFTCQDKAKLLLQEQRDSGEAL-AVKSNSDPLYSFCAYLVSLGEELGMKMG 693

Query: 708 ------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
                       L  +Y  + E       + ++      +L +   +   K++  + + K
Sbjct: 694 NKNIYPRAPRIYLYHAYLSFMEAYGF--DRPLTLTKFGDSLPK--VMQEYKKDYRKFKTK 749

Query: 762 SKRII 766
                
Sbjct: 750 RGYYY 754


>gi|145632692|ref|ZP_01788426.1| phage DNA primase-like protein [Haemophilus influenzae 3655]
 gi|144986887|gb|EDJ93439.1| phage DNA primase-like protein [Haemophilus influenzae 3655]
          Length = 589

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/425 (13%), Positives = 134/425 (31%), Gaps = 54/425 (12%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
            +++    +  +  +N              +    +S  +   ++L+A            
Sbjct: 177 REIYAYDGKTWNKQENDDLEEKAVKFLDENEFNYSDSTIERLIKTLKAQLPRMGEMSK-- 234

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF-ESEE 481
                +  ++G+L+  T +     ++ ++T      + +       F   +S     ++E
Sbjct: 235 ---DLIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKHVTDTPHFDKWLSFVSDGNKE 291

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
                   +   L      Q F  I G GGSGKS   ++     G +   ++        
Sbjct: 292 KARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDE 351

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
           R          L  L    +++  E ++    +++ +K +TGGD +  R NY + + +  
Sbjct: 352 RG---------LSGLENKTLILCPEQSKYAG-DSSGLKSITGGDTVRVRYNYQDPF-DVK 400

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659
            +    ++ N+            RR ++  F K +    RD  F  K+         +  
Sbjct: 401 ITALVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITL-EVGGIIRKV 459

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAWI-----DDCCD--- 702
                           P    KA +         E ++ +D    +       +  D   
Sbjct: 460 FD----------SFPDPNDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLF 509

Query: 703 ---IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
                  L +    L  +Y  Y +     +   +      + ++Q     G K + +++ 
Sbjct: 510 IGVTNMGLDKIRTHLYPAYLAYTKA---MNIGELGLNNFVIGVEQALKQNGNKHDFMKRH 566

Query: 760 WKSKR 764
            K+ R
Sbjct: 567 TKTGR 571


>gi|328543326|ref|YP_004303435.1| Gp33 [polymorphum gilvum SL003B-26A1]
 gi|326413072|gb|ADZ70135.1| Gp33 [Polymorphum gilvum SL003B-26A1]
          Length = 779

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 120/788 (15%), Positives = 222/788 (28%), Gaps = 110/788 (13%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK--LPACGFGFVCGVGEQPL 65
           E     +  G +LI +    K+P   G      L+ E+ ++  L     G      +   
Sbjct: 50  EALDAHVEAGHELIAVD--GKKPVASGWRTALPLAREQAERRLLAGRNVGVRLRDVD--- 104

Query: 66  YAFDIDSKD-EKTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
              D+D ++  +  +          L   P V  G   K  + FR   E     +     
Sbjct: 105 LVLDVDPRNFAENDDPLTRLVRDFDLRDAPFVVTGGGGK-HLYFRKPAEVAVVNE--LDA 161

Query: 123 QGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
              ++    G+  VA    HP+T + Y       R ++ + P  SE+ +  + K      
Sbjct: 162 YRGVEFKSLGRQVVAAGSVHPETGRLYALDDDVLRMELSEAPEASEKLLRAIEK------ 215

Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
                       S   + N + + T  ++   LS      YNG HDEW+ V+MA HH T 
Sbjct: 216 -----------LSVGASENRSGEITAEQLARLLSKLDVMAYNGRHDEWLKVMMASHHGTA 264

Query: 242 GSSKGKEIARRWSKQGSTY--DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP 299
           G  +G +    WS     Y  DE     +W++ D    G     ++   +L         
Sbjct: 265 G--EGVDEFVAWSTSDPDYAGDEARIRERWNSLDTRRGG--VTLKTLLRALVDAGNGAWI 320

Query: 300 KGLLASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
           + +L S   D ++             L   +   +         +   +    T   +  
Sbjct: 321 EEVLRSAPEDDFDDVPEMPRSMGDLALARMNRNHFTVLHGGKYLVGRESK-HPTLGHVAV 379

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
                  +    +      ++ K                                     
Sbjct: 380 DWFSAGAISAHFDSRTVEVEDGKQKALG-------------------------------- 407

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF- 477
                   R    +  + D         T    + +        G        L+     
Sbjct: 408 -SWWVKHPRRRQYEGVVFDPSPK--RTHTSLYNLWRGWAVEPKAG-DWSLLKRLLKDVLC 463

Query: 478 -ESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
               E  DY  R     +      A+  +  +G  G+GK T    +K   G      A+A
Sbjct: 464 RGDAESFDYVLRWAAFMVQKPDMPAEVALVFKGSKGAGKGTFARALKSLAGMHGKQVAQA 523

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYG 594
              +                LM   ++ + E     D   A  +K +     ++     G
Sbjct: 524 EHFVGRFNE----------HLMDCVLLFVDEGYWAGDPKAAGALKNLITEPVLSFEPK-G 572

Query: 595 NTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYT 652
                 P      I  N+   V  + D+   RR+ V   D     R  + F   L  +  
Sbjct: 573 RPIVSGPNMLHVVIASNEDWIVPASADE---RRFAVFEADTEARKRLPSGFFDTLNAQMA 629

Query: 653 LEAKKWFLKGVKAYISKGLDV--DIP---EVCLKAKEEERQGTDTYQAWI-------DDC 700
                  L  ++            IP    +  +  +  R+       W         D 
Sbjct: 630 NGGLAAMLHDLQNLDLGDWHPRMAIPNTQALIEQKVQAFRRE--PLSFWWFRTLEAGGDG 687

Query: 701 CDIGENLW-EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
             + E++W      +  +  E    E+    K ++            F+  +  +   K+
Sbjct: 688 LTLDEDVWAVRQVDVGPNGKEELVAEVCAVAKGMNRTAQFSKKAVAQFLKSVGVDVNAKD 747

Query: 760 WKSKRIIK 767
            +  R+ +
Sbjct: 748 SRGVRVWR 755


>gi|331673076|ref|ZP_08373850.1| bacteriophage P4 DNA primase [Escherichia coli TA280]
 gi|331069763|gb|EGI41144.1| bacteriophage P4 DNA primase [Escherichia coli TA280]
          Length = 610

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/541 (13%), Positives = 161/541 (29%), Gaps = 86/541 (15%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E  + A+K+           ++      +   +        + + + Y   
Sbjct: 117 ENWREYLERERAELAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 176

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 177 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 206

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 207 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 257

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
             +  K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 258 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 317

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 318 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 368

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS    +    +  N  +
Sbjct: 369 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 426

Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              +      RR ++  F + +    RD   A+K+E        +  L            
Sbjct: 427 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFADQDEARRL 485

Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721
           +   +   +A    ++  D+   +        + D   +G      +     L  +Y  Y
Sbjct: 486 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 544

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                    K ++      ++   G +    RE ++++ K      GL+         ++
Sbjct: 545 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 595

Query: 782 S 782
            
Sbjct: 596 W 596


>gi|323977714|gb|EGB72800.1| phage/plasmid primase [Escherichia coli TW10509]
          Length = 605

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/541 (13%), Positives = 163/541 (30%), Gaps = 86/541 (15%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E G+ A+K+           ++      +   +        + + + Y   
Sbjct: 112 ENWREYLERERGELAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 172 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 201

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 252

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
             +  K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 253 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLHRSVAENDRKADRVLAALFMVL 312

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS    +    +  N  +
Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 421

Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              +      RR ++  F + +    RD+  A+K+E        +  L            
Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIE-GELAVVIRHLLTRFANQDEARRL 480

Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721
           +   +   +A    ++  D+   +        + D   +G      +     L  +Y  Y
Sbjct: 481 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 539

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                    K ++      ++   G +    RE ++++ K      GL+         ++
Sbjct: 540 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 590

Query: 782 S 782
            
Sbjct: 591 W 591


>gi|300954445|ref|ZP_07166897.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
 gi|300318595|gb|EFJ68379.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
          Length = 605

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/541 (13%), Positives = 163/541 (30%), Gaps = 86/541 (15%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E G+  +K+           ++      +   +        + + + Y   
Sbjct: 112 ENWREYLERERGELTEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 172 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 201

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 252

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
             +  K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 253 FRQHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 312

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS    +    +  N  +
Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 421

Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              +      RR ++  F + +    RD+  A+K+E        +  L            
Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIE-GELAVVIRHLLTRFADQDEARRL 480

Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721
           +   +   +A    ++  D+   +        + D   +G      +     L  +Y  Y
Sbjct: 481 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 539

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
            +       K ++      ++   G +    RE ++++ K      GL+         ++
Sbjct: 540 MKAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 590

Query: 782 S 782
            
Sbjct: 591 W 591


>gi|323946009|gb|EGB42047.1| poxvirus D5 protein [Escherichia coli H120]
          Length = 774

 Score =  141 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/433 (15%), Positives = 121/433 (27%), Gaps = 65/433 (15%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           + +             S   R       R      + K  S  ++L+      I     +
Sbjct: 351 QLLSRYESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLK-----LIVPQQQN 405

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476
            S   +G ++G+LD  TG      KE ++       F            +  F   +   
Sbjct: 406 PSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRA 465

Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
                   D     + M L      Q F+ + G GGSGKS L  +     G     +A  
Sbjct: 466 AGHKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATI 525

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y N
Sbjct: 526 ETLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 575

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653
            YS          V N  +   +      RR +++ F + I    RD     K+      
Sbjct: 576 AYSTHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELA 633

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIG 704
              +  ++              P       + +         ++  D    +     +  
Sbjct: 634 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEAL 682

Query: 705 ENL------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFI 748
            +              +    L  +Y  Y E      +  +S           LK+ G  
Sbjct: 683 PDTNGMFMGNANIVPRQPRTYLYHAYLVYMEANGF--KNTLSLTMFGKGLPVMLKEYGLN 740

Query: 749 GGIKREKIEKEWK 761
              +R     +  
Sbjct: 741 YEKRRTNQGMQTN 753


>gi|6739647|gb|AAF27348.1|AF198256_2 phage phi-R73 primase-like protein [Haemophilus influenzae]
          Length = 589

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/422 (13%), Positives = 134/422 (31%), Gaps = 48/422 (11%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
            +++    +  +  +N              +    +S  +   ++L+A            
Sbjct: 177 REIYAYDGKTWNKQENDDLEEKAVKFLDENEFNYSDSTIERLIKTLKAQLPRMGEMSN-- 234

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF-ESEE 481
                +  ++G+L+  T +     ++ ++T      + +       F   +S     +++
Sbjct: 235 ---DLIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKQATDTPLFDKWLSFVSDGNKD 291

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
                   +   L      Q F  I G GGSGKS   ++     G +   ++        
Sbjct: 292 KARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDE 351

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
           R          L  L    +++  E ++     +  +K +TGGD +  R NY + + +  
Sbjct: 352 RG---------LSGLENKTLILCPEQSKYAGDGSG-LKSITGGDTVRVRYNYQDPF-DVK 400

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659
            +    ++ N+            RR ++  F K +    RD  F  K+         +  
Sbjct: 401 ITALVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITL-EVGGIIRKV 459

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQG------TDTYQAWI-----DDCCD------ 702
                       D +  +  LKA+ E ++       +D    +       +  D      
Sbjct: 460 FDSFH-------DPNDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLFIGV 512

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
               L +    L  +Y  Y +     +   +      + ++Q     G K   +++  K+
Sbjct: 513 TNMGLDKIRTHLYPAYLAYTKA---MNIGELGLNNFVIGVEQALKQNGNKHNFMKRHTKT 569

Query: 763 KR 764
            R
Sbjct: 570 GR 571


>gi|432620|emb|CAA53920.1| unnamed protein product [Streptomyces phage phiC31]
          Length = 519

 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 87/263 (33%), Gaps = 30/263 (11%)

Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
           SDA N      +  G   Y +             ++W       +A+ +   +       
Sbjct: 278 SDAMNAHALVAWTDGRIKYAS---------GLGYFVWDGVTWVKSATRVRQEIHAMGAAL 328

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
            L+                       +     ++  +    L +     + ++  D+++ 
Sbjct: 329 VLAG-----------------CLPESRGFTMTTRIDALMTELRSVPSVHVEAEEFDANAH 371

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
            L   +G++DL TG+     K   +T S    +     +  +   +   F  + +++ Y 
Sbjct: 372 LLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEIFPNNADLVGYM 431

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
            R VG  + G    Q F  + G G +GKS     +   FG        A+   +      
Sbjct: 432 RRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGRITKTTPFATFEDKGNG--- 488

Query: 547 GKANPSLIRLMGSRIVIISETNE 569
           G     L  L GSR+V+ SE + 
Sbjct: 489 GGIPNDLAALRGSRLVMASEASR 511


>gi|56416267|ref|YP_153342.1| hypothetical protein SPA4299 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197365190|ref|YP_002144827.1| hypothetical protein SSPA3993 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56130524|gb|AAV80030.1| hypothetical protein SPA4299 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197096667|emb|CAR62284.1| hypothetical protein SSPA3993 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 777

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 111/368 (30%), Gaps = 54/368 (14%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  TG      K  ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S    +    +  N  +   +      RR +++ F + I    RD     K+        
Sbjct: 581 STHIPAVILAV-NNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKNKIAR-ELAVI 638

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704
            +  ++              P       + +         ++  D    +    +     
Sbjct: 639 VRQLMQ----------RFSDPMTAHALLQSQQNSDEALSIKRDADPTFDFCGYLEALPEP 688

Query: 705 ENLWE---------ESHSLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKR 753
           E ++              L  +Y  Y E     N     +  + +   LK+ G     +R
Sbjct: 689 EGMYIGNANIIPRQPRLYLYHAYLAYMEAHGYKNTLSLTMFGKGLPAMLKEYGLSYEKRR 748

Query: 754 EKIEKEWK 761
           +    +  
Sbjct: 749 KNQGIQTN 756


>gi|300957418|ref|ZP_07169632.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
 gi|300315853|gb|EFJ65637.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
          Length = 774

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 66/433 (15%), Positives = 121/433 (27%), Gaps = 65/433 (15%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           + +             S   R       R      + K  S  ++L+      I     +
Sbjct: 351 QLLSRYESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLK-----LIVPQQQN 405

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476
            S   +G ++G+LD  TG      KE ++       F            +  F   +   
Sbjct: 406 PSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRA 465

Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
                   D     + M L      Q F+ + G GGSGKS L  +     G     +A  
Sbjct: 466 AGHKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATI 525

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y N
Sbjct: 526 ETLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 575

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653
            YS          V N  +   +      RR +++ F + I    RD     K+      
Sbjct: 576 AYSTHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELA 633

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIG 704
              +  ++              P       + +         ++  D    +     +  
Sbjct: 634 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEAL 682

Query: 705 ENL------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFI 748
            +              +    L  +Y  Y E      +  +S           LK+ G  
Sbjct: 683 PDTNGMFMGNANIVPRQPRTYLYHAYLVYMEANGY--KNTLSLTMFGKGLPVMLKEYGLH 740

Query: 749 GGIKREKIEKEWK 761
              +R     +  
Sbjct: 741 YEKRRTNQGMQTN 753


>gi|260858430|ref|YP_003232321.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
 gi|257757079|dbj|BAI28581.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
          Length = 777

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 66/433 (15%), Positives = 121/433 (27%), Gaps = 65/433 (15%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           + +             S   R       R      + K  S  ++L+      I     +
Sbjct: 354 QLLSRYESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLK-----LIVPQQQN 408

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476
            S   +G ++G+LD  TG      KE ++       F            +  F   +   
Sbjct: 409 PSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRA 468

Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
                   D     + M L      Q F+ + G GGSGKS L  +     G     +A  
Sbjct: 469 AGHKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATI 528

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y N
Sbjct: 529 ETLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 578

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653
            YS          V N  +   +      RR +++ F + I    RD     K+      
Sbjct: 579 AYSTHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELA 636

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIG 704
              +  ++              P       + +         ++  D    +     +  
Sbjct: 637 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEAL 685

Query: 705 ENL------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFI 748
            +              +    L  +Y  Y E      +  +S           LK+ G  
Sbjct: 686 PDTNGMFMGNANIVPRQPRTYLYHAYLVYMEANGY--KNTLSLTMFGKGLPVMLKEYGLH 743

Query: 749 GGIKREKIEKEWK 761
              +R     +  
Sbjct: 744 YEKRRTNQGMQTN 756


>gi|318604725|emb|CBY26223.1| zinc binding domain; DNA primase,Phage P4-associated; Replicative
           helicase RepA, Phage P4-associated [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 764

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 66/445 (14%), Positives = 130/445 (29%), Gaps = 56/445 (12%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            E V+    E  D   +    R               +  ++  ++++            
Sbjct: 334 SETVYHYDGERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMAEPS-- 391

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLVSG 475
                 +G Q+G+ DL+  Q        ++       F E  P          F   ++ 
Sbjct: 392 ---RHLIGFQNGVYDLKARQFRPHCANDWVQHHNDIIFTEPRPDENLARHAPHFAKWLAH 448

Query: 476 YFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
               E   M      + M L      Q F+ + G GGSGKS   ++     G Q   +  
Sbjct: 449 AANDELPKMASIRAALFMILSNRFDWQLFLEVTGEGGSGKSVFTHIATLLAGRQNTASGN 508

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNY 593
            + + Q R            + +G  +  I+  ++   +     IK +TGGD +     Y
Sbjct: 509 MAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDGKY 557

Query: 594 GNTYSESPASFTPFIVPNKHLF-VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
              +S      T  +  N              RR ++  F+ P+   ++D    +K+   
Sbjct: 558 EKQFSTLI--TTVVLATNNEPISFTERQGGIARRRVIFAFNHPVKEADKDPQIGEKI-AA 614

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----- 705
                 +  L            +       +A    ++  D    +     ++GE     
Sbjct: 615 ELPVVIRCLLAEFVDQDKARKLLLEQRDSREAMGI-KRDADPLYGFCAHIVELGEAVGMY 673

Query: 706 ------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIE 757
                 +       L  +Y  Y E   +     ++   +     +K+ G           
Sbjct: 674 MGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKEFG----------- 722

Query: 758 KEWKSKRIIKGLKLKPAFESVDDNS 782
            E+K  R  KG +         ++ 
Sbjct: 723 AEYKKARTDKGFRYNMDLSDTANDW 747


>gi|298674303|ref|YP_003726053.1| phage/plasmid primase [Methanohalobium evestigatum Z-7303]
 gi|298287291|gb|ADI73257.1| phage/plasmid primase, P4 family [Methanohalobium evestigatum
           Z-7303]
          Length = 479

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/438 (14%), Positives = 134/438 (30%), Gaps = 28/438 (6%)

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST--AQS 408
           I  +  N L  +  D      E      NS    F  N    +     N   +     + 
Sbjct: 46  IYKNNPNLLDRIIYDEGARLSELRGKGNNSPFTDFDNNNSPFKDFDNSNLIKEEVERVKH 105

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ- 467
           +    +  I    +++   +L   +G+L+L+TG+    + E+Y TK     + +      
Sbjct: 106 VIQSKLRCIDKSQINTDKFYLPVNNGLLELKTGKLKNFSPEIYFTKKIPIDYKKDTNVPC 165

Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
           EF + +   F   E  +      +G  L  G    +F+ +RG+  +G + ++ L+K   G
Sbjct: 166 EFFNFLKDIFEGDEWQIYVLQEYLGYTLYCGYPFDKFLFLRGLPENGINVILELMKSLVG 225

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
           +        SD+++ +           +        I  E  +N   N  ++ ++ G + 
Sbjct: 226 DVNYHTLTFSDLLKEKSAVQ-------LEYYDKLFNICGEMGKNVSPNPEQLGKLVGDNA 278

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI---PFDKPI-ANRDAS 642
           +     Y   +             +K   V        ++ I++   P +K I  +   +
Sbjct: 279 IKVDEKYEYGF-TFKNRTKLLFTGDKLPDVNRLSADLIKKLIILDVFPKEKRIQNDEIPN 337

Query: 643 FAQKLETKYTL----EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ-GTDTYQAWI 697
             Q                W L+G++  +         E       E      +    ++
Sbjct: 338 VHQIQIMCENPTFLKGILSWALEGLQRLLYNN-GFSYSEKIDNKINEMLTLKENHIDLYV 396

Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
                     +  S  +   Y  +  +                         G K  K +
Sbjct: 397 GQRIAHNTGSFCPSDMVYSDYISFASE---LGITPYGKSKFYSEFIDACIKFGYKLYKTQ 453

Query: 758 KEWKSK---RIIKGLKLK 772
           K + +    +    + LK
Sbjct: 454 KTYNNGKRHQSFVNISLK 471


>gi|194444462|ref|YP_002043737.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194403125|gb|ACF63347.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 776

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/371 (15%), Positives = 106/371 (28%), Gaps = 60/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
              +G ++G+LD  TG      KE ++       F            +  F   +     
Sbjct: 410 RHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRAAG 469

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
                 D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 470 HKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 529

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y N Y
Sbjct: 530 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAY 579

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR +++ F + I    RD     K+        
Sbjct: 580 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELAVI 637

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P       + +         ++  D    +     +   +
Sbjct: 638 VRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEALPD 686

Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750
                         +    L  +Y  Y E      +  +S           LK+ G    
Sbjct: 687 TNGMFMGNANIVPRQPRTYLYHAYLVYMEANGY--KNTLSLTMFGKGLPVMLKEYGLHYE 744

Query: 751 IKREKIEKEWK 761
            +R     +  
Sbjct: 745 KRRTNQGMQTN 755


>gi|170680147|ref|YP_001743025.1| D5 family nucleoside triphosphatase [Escherichia coli SMS-3-5]
 gi|170517865|gb|ACB16043.1| nucleoside triphosphatase, D5 family [Escherichia coli SMS-3-5]
          Length = 605

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 71/541 (13%), Positives = 160/541 (29%), Gaps = 86/541 (15%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E  + A+K+           ++      +   +        + + + Y   
Sbjct: 112 ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 172 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 201

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 252

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
             +  K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 253 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 312

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS    +    +  N  +
Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 421

Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              +      RR ++  F + +    RD   A+K+E        +  L            
Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFADQDEARRL 480

Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721
           +   +   +A    ++  D+   +        + D   +G      +     L  +Y  Y
Sbjct: 481 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 539

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                    K ++      ++   G +    RE ++++ K      G +         ++
Sbjct: 540 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GFRSNVTLTEESED 590

Query: 782 S 782
            
Sbjct: 591 W 591


>gi|227329980|ref|ZP_03834004.1| hypothetical protein PcarcW_22653 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 451

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 107/352 (30%), Gaps = 46/352 (13%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           E  F                R       + Q     S   S   +L+             
Sbjct: 99  ETFFQYQNGAWKVLPYRLLSRDIAALFQKIQAPFTASGIGSVLDTLKLIIPMQEKP---- 154

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGY 476
              R +G ++G+ D  +G+     +E ++       +          + +  F   ++  
Sbjct: 155 -QRRLIGFRNGVFDTVSGEFKPHRREHWLHTVNDVDYTPFKAGENLADNAPHFWRWLTRA 213

Query: 477 FES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
             +  +  +     + M L      Q F+ + G GGSGKS L  +     G      A  
Sbjct: 214 AGNNADKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATI 273

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
           + I  +R   +         ++G  ++++ +  +     A  IK +TGGD +     Y +
Sbjct: 274 NTIESSRERSS---------IIGFSLIVLPDQEKWSGDGAG-IKAITGGDAVMVDPKYRD 323

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653
            YS          V N  +   +      RR ++I F + I    RD    +K+      
Sbjct: 324 AYSTRIP-AVILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKI-RAELA 381

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAW 696
              +  +K            + P       +         E ++  D    +
Sbjct: 382 VIVRHLMK----------RFEEPNDARMLLQAQQHSAEALEIKRQADPLVDF 423


>gi|331664205|ref|ZP_08365111.1| bacteriophage P4 DNA primase [Escherichia coli TA143]
 gi|331058136|gb|EGI30117.1| bacteriophage P4 DNA primase [Escherichia coli TA143]
          Length = 591

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/541 (13%), Positives = 160/541 (29%), Gaps = 86/541 (15%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E  + A+K+           ++      +   +        + + + Y   
Sbjct: 98  ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 157

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 158 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 187

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 188 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 238

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
                K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 239 FRGHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 298

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 299 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 349

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS    +    +  N  +
Sbjct: 350 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 407

Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              +      RR ++  F + +    RD   A+K+E        +  L            
Sbjct: 408 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFADQDEARRL 466

Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721
           +   +   +A    ++  D+   +        + D   +G      +     L  +Y  Y
Sbjct: 467 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 525

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                    K ++      ++   G +    RE ++++ K      GL+         ++
Sbjct: 526 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 576

Query: 782 S 782
            
Sbjct: 577 W 577


>gi|307129027|ref|YP_003881043.1| DNA primase [Dickeya dadantii 3937]
 gi|306526556|gb|ADM96486.1| DNA primase [Dickeya dadantii 3937]
          Length = 589

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 138/430 (32%), Gaps = 52/430 (12%)

Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
            D     +  + + + D         S  ++   SL    +  +T+         +G  +
Sbjct: 174 ADKELQREMAQIFIDADIAYSQNAIKSAVETMKLSL---PVMGVTAR------NLIGFSN 224

Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFES-EEVMDY 485
           G+ D  +GQ     KE ++  ++  PF            +  F   +S    + +   D 
Sbjct: 225 GVFDTRSGQFRCHIKEDWLLIASELPFSAPAEGETLATHAPSFWKWLSRSVGNNKRKADR 284

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
               + M L      Q F+ + G GGSGKS    +     G    ++A    +   R   
Sbjct: 285 VLAALFMVLANRYDWQLFLEVTGPGGSGKSVFAEICTMLAGKANTVSASMKALEDPR--- 341

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                     ++G  ++I+ +        A  IK +TGGD ++    +   YS    +  
Sbjct: 342 ------DRALVVGYSLIIMPDMTRYAGDGAG-IKAITGGDKVSIDPKHKAPYSTRIPAVV 394

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGV 663
             +  N  +   +      RR ++  F + +    RD   A+K+E        +  L   
Sbjct: 395 LAV-NNNAMTFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVIIRHLLTRF 452

Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESH 712
                    +   +   +A    ++  D+   +        + D   IG      +    
Sbjct: 453 AKQDEAKRLLHEQQKSEEAMAI-KREGDSLVDFCGYLMASVLCDGMFIGNAEIVPFSPRR 511

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
            L  +Y  Y         K +S      ++   G +    +E  +++ K      GL+  
Sbjct: 512 YLYHAYLAYMRANGLN--KPVSLTRFGTDMP--GAMAEYGKEYQKRKTK-----LGLRSN 562

Query: 773 PAFESVDDNS 782
                  ++ 
Sbjct: 563 VTLNEDSEDW 572


>gi|269140399|ref|YP_003297100.1| bacteriophage P4 DNA primase [Edwardsiella tarda EIB202]
 gi|267986061|gb|ACY85890.1| bacteriophage P4 DNA primase [Edwardsiella tarda EIB202]
          Length = 611

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 114/372 (30%), Gaps = 62/372 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  TG     +K  ++       F            +  F   +     
Sbjct: 245 RRLIGFRNGVLDTSTGIFSPHSKTHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAG 304

Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
           S  +  D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 305 SRADKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 364

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 365 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 414

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S    +    +  N  +   +      RR +++ F + I    RD     K+        
Sbjct: 415 STHIPAVILAV-NNNPMRFTDRSGGVSRRRVIMHFPEQIAPEERDPKLKDKIAR-ELAVI 472

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
            +  ++              P       + +         ++  D    +    C   E 
Sbjct: 473 VRQLMQ----------TFSDPMTARTLLQSQQNSDEALSIKRDADPTFDF----CGYLEA 518

Query: 707 LWEESH---------------SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIG 749
           L E                   L  +Y  Y E     N     +  + ++  LK+ G   
Sbjct: 519 LPEPDGMYMGNANIIPRQPRLYLYHAYLVYMEAHGYKNTLSLTMFGKGLSSMLKEYGLNY 578

Query: 750 GIKREKIEKEWK 761
           G +R     +  
Sbjct: 579 GKRRTNQGMQTN 590


>gi|218698910|ref|YP_002406539.1| putative DNA primase from prophage [Escherichia coli IAI39]
 gi|218368896|emb|CAR16647.1| putative DNA primase from prophage (possibly fragment) [Escherichia
           coli IAI39]
          Length = 545

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 142/441 (32%), Gaps = 48/441 (10%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            + V   +    +  ++ +  R         +     +  KS   +++            
Sbjct: 118 SDTVHHYNGVVWEPVQDKELQRAMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMG----- 172

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474
           +++   +G  +G+ D  TG   +  K  ++  ++  PF            +  F   +  
Sbjct: 173 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 232

Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
              E++   D     + M L      Q FI + G GGSGKS +  +     G    ++A 
Sbjct: 233 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 292

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
              +   R             ++G  ++I+ +        A  IK +TGGD +     + 
Sbjct: 293 MKALEDAR---------ERALVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 342

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652
             YS    +    +  N  +   +      RR ++  F + +    RD+  A+K+E    
Sbjct: 343 APYSTRIPAVVLAV-NNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIE-GEL 400

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704
               +  L            +   +   +A    ++  D+   +        + D   +G
Sbjct: 401 AVVIRHLLTRFADQDEARRLLYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVG 459

Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
                 +     L  +Y  Y         K ++      ++   G +    RE ++++ K
Sbjct: 460 NAEIVPFSPRRYLYHAYLAYMRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTK 515

Query: 762 SKRIIKGLKLKPAFESVDDNS 782
                 GL+         ++ 
Sbjct: 516 H-----GLRSNVTLTEESEDW 531


>gi|85703019|ref|ZP_01034123.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217]
 gi|85671947|gb|EAQ26804.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217]
          Length = 1012

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 103/294 (35%), Gaps = 23/294 (7%)

Query: 4   MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCG 59
           + ++  A++ + NG++ IP++ G K P  L +W   ++    +D    +  +CG G   G
Sbjct: 30  ITFENAAERLLDNGYEPIPIKPGQKAPA-LNRWTSVVIDDAALDDWRGRYASCGIGLRTG 88

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
           +    L   DID  D   A+  +       G  +VR+G  PK L+ +R            
Sbjct: 89  L----LVGIDIDVLDPDRAHDVQALAVRRFGETLVRVGCWPKRLLIYRTEIPF------A 138

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK--VEDTPLLSEEDVEYLFKFF 177
           +   G ++ILG GQ FVA+ IHP T + Y W          + D P++   ++       
Sbjct: 139 KMKSGQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVIDHTEIAAFLAEI 198

Query: 178 QEITVPLVKDK--KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH---DEWIPV 232
           +      + D   +    +       + Q    +                    ++ + V
Sbjct: 199 EPTDHRSITDAGGRRRKAAGFGHPVRDAQGVVTDGRDAWLSLIAFHAVHDLLEAEDALDV 258

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRS 285
                   +   +  ++ R       TY   +   K  D       G    +  
Sbjct: 259 DQLAAQVWQRFGESTDLTRPRQDGARTYTYSDAVRKVHDKMRLHATGALPSRDR 312


>gi|85703049|ref|ZP_01034153.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217]
 gi|85671977|gb|EAQ26834.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217]
          Length = 791

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 103/294 (35%), Gaps = 23/294 (7%)

Query: 4   MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCG 59
           + ++  A++ + NG++ IP++ G K P  L +W   ++    +D    +  +CG G   G
Sbjct: 30  ITFENAAERLLDNGYEPIPIKPGQKAPA-LNRWTSVVIDDAALDDWRGRYASCGIGLRTG 88

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
           +    L   DID  D   A+  +       G  +VR+G  PK L+ +R            
Sbjct: 89  L----LVGIDIDVLDPDRAHDVQALAVRRFGETLVRVGCWPKRLLIYRTEIPF------A 138

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK--VEDTPLLSEEDVEYLFKFF 177
           +   G ++ILG GQ FVA+ IHP T + Y W          + D P++   ++       
Sbjct: 139 KMKSGQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVIDHTEIAAFLAEI 198

Query: 178 QEITVPLVKDK--KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH---DEWIPV 232
           +      + D   +    +       + Q    +                    ++ + V
Sbjct: 199 EPTDHRSITDAGGRRRKAAGFGHPVRDAQGVVTDGRDAWLSLIAFHAVHDLLEAEDALDV 258

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRS 285
                   +   +  ++ R       TY   +   K  D       G    +  
Sbjct: 259 DQLAAQVWQRFGESTDLTRPRQDGARTYTYSDAVRKVHDKMRLHATGALPSRDR 312


>gi|168061752|ref|XP_001782850.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665628|gb|EDQ52305.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 88/238 (36%), Gaps = 17/238 (7%)

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
            R +   L G N  + F    G G +GK+ +++L++ AFG+  V     S +M  R  ++
Sbjct: 1   MRFISSCLEGRNANKIFSIWSGSGDNGKTVMVSLVERAFGDYAV-KMPTSLLMGKR-VQS 58

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
             A P +  L G  I ++ E +E D++N   +K++ G D +  R  Y       P +   
Sbjct: 59  LAATPEVAMLKGRLIALVEEPDEGDKLNLGVMKELKGNDSLYVRGLYKEGAV-IPQTAKF 117

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            ++ N+   ++   D        + F   I                    +  ++  K Y
Sbjct: 118 VLIANRISQMKPSHDPLTTHLRDVNFSNKIP------------LLAPVFMRLVIEEYKQY 165

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
           ++ GL  + P       E      D +  ++    +           L  +Y  + + 
Sbjct: 166 LTYGL--EEPNDVKDCTETIHVSNDIFGQFLSANVEKSNKSIVAIKELYDTYKYWSKD 221


>gi|86158263|ref|YP_465048.1| hypothetical protein Adeh_1839 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774774|gb|ABC81611.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 751

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 89/621 (14%), Positives = 175/621 (28%), Gaps = 111/621 (17%)

Query: 29  RPQRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTF---K 82
           +      W     +   + +    P  G GFV    +  +   D D   + +        
Sbjct: 43  KTNDPKTWRPFRDALAFLKRTYDDPQAGVGFVF-QRKLGVVFIDFDHCLDTSGALLPWAA 101

Query: 83  DTFEILHGTPIVRIGQKPKILIPF--RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI 140
              E   GT + R      + +     +     K      +   H+++    +Y      
Sbjct: 102 PLLEPFRGTYVERSLSGRGLHVLALGSVPHAFSKLVPPAAAGDEHIEVYSEKRYAAI--- 158

Query: 141 HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200
              T   Y         ++ D     +++++ L +                +P       
Sbjct: 159 ---TGDTY----DGAPAELLD----KQKELDALLRALAPKATVAATRSDEHVPLSA---- 203

Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260
                  +E+    S       +  HDEW+ V MA+H    GS++G  +   WS  G  Y
Sbjct: 204 -------QEVDKIRSALDAIDPDVGHDEWLRVGMALHFGFEGSAEGLALWNEWSAGGGKY 256

Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
                  +W +F         +   T  SLF+   K   +    +        A      
Sbjct: 257 KNGEPADRWRSF--------KRNGVTLGSLFHFAKKHGWRPEPTAEQDFGPALAR----- 303

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
              F+   D  + +                I  S  +F+     D          + +  
Sbjct: 304 DEAFVSLDDLNSQFFV--------------IEESGRHFVACESYD----------HARRR 339

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG---------E 431
           +  + +   +++ + +      +   Q   A S             ++LG          
Sbjct: 340 RMLKRFSFAEFKARYLGRTVLNEKGRQIPMAKSWL-----EWPGRRQYLGGVVFVPGRSL 394

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
              +L+L  G  V P    +         V    + E    V G+     +     R   
Sbjct: 395 PSDVLNLWGGWAVAPKPGDWSLLREHIHDVICSKNDELDAYVMGW-----LRRLVQR--- 446

Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
                    +  + +RGV G+GKS +   ++   G   +  A    +             
Sbjct: 447 ----PDEPGEVVLVLRGVQGAGKSVVGYALQRMCGQHGMAVASQRAVTGQF----NAHLR 498

Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
            L+ L+ +  V        D    + +K +     +       +   E P      +  N
Sbjct: 499 DLLLLVANEAVF-----PGDRSGTSALKALATDPTIFLEQKGIDA-VEVPNYLHILMTTN 552

Query: 612 KHLFVRNP-DDAWWRRYIVIP 631
           ++  V    DD   RR+ V+ 
Sbjct: 553 ENWAVPVALDD---RRFAVLD 570


>gi|296532655|ref|ZP_06895354.1| phage/plasmid primase [Roseomonas cervicalis ATCC 49957]
 gi|296267026|gb|EFH12952.1| phage/plasmid primase [Roseomonas cervicalis ATCC 49957]
          Length = 489

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/511 (11%), Positives = 142/511 (27%), Gaps = 61/511 (11%)

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
                     G       +  +    +         + D           +        +
Sbjct: 17  LEWSPDDKDGGDTCRERLEIGSDVEIARRVSEDLCNSFD----------RIVHADGQFWR 66

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
                  +    + ++  +    +     + + +       + +     ++  +   +  
Sbjct: 67  Y--EGTCWRPIPEPELRRVVHCYDGAEYTTPTGKPSAVALSKARINSSLNEMAAMLAAP- 123

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGTPFVEG-EPS 466
                    +    +   +    G ++ E          + E     +    +     P 
Sbjct: 124 ---------NFFVDAPAGINCASGFIEFERDGTPTIKPHSPEQRARHTLPGRYPAKIAPD 174

Query: 467 QE----FLDLVSGYF-ESEE---VMDYFTRCVGMALLGGNK---AQRFIHIRGVGG-SGK 514
           Q        L+ G F   E+    +++     G A  G +      + I ++G    +GK
Sbjct: 175 QRAASLMTKLLQGCFKGDEDAEAKINFLGEIAGAAATGWSTRLTKPKAIILKGETAENGK 234

Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
           S +++L++    +  + +     +   R          L+ L G  +    E      I 
Sbjct: 235 SQILDLLRGLLPDTAICSIPPQKLADERF---------LVTLAGKLLNASDELTSATAIG 285

Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFD 633
           +   K    G+ M+ R  Y +               N     R   D    RR   + F 
Sbjct: 286 SDSFKSAITGEPMSGRDVYRSA-VGFRPFALHVYATNDLPTFRGGMDRGVMRRLAALTFQ 344

Query: 634 KPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
           + I    R     Q++          + ++G    I++      P    +A  E   G D
Sbjct: 345 RTIPTNERIEHIGQRIGQDEPDLLLDFAVQGASRLIARK-SYAEPTSSNQAIREWALGAD 403

Query: 692 TYQAWIDDCCDIG-ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
             QAW+      G  +   ++    + +  +  +E        +    T  +  +     
Sbjct: 404 AVQAWLHTVNVTGNAHDKCKTREAYQYFRNWALEEGYQSTALPAVTQFTQRVVAQRPQIT 463

Query: 751 IKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
           I         +    ++GL+L P   S+DD+
Sbjct: 464 I------IRPQRVSHLRGLRLGP--PSIDDS 486


>gi|260846581|ref|YP_003224359.1| putative DNA primase [Escherichia coli O103:H2 str. 12009]
 gi|257761728|dbj|BAI33225.1| putative DNA primase [Escherichia coli O103:H2 str. 12009]
 gi|326339871|gb|EGD63678.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125]
          Length = 608

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/541 (13%), Positives = 160/541 (29%), Gaps = 86/541 (15%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E  + A+K+           ++      +   +        + + + Y   
Sbjct: 115 ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 174

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 175 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 204

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 205 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 255

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
             +  K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 256 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 315

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 316 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 366

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS    +    +  N  +
Sbjct: 367 LVVGFSLIILPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNSAM 424

Query: 615 FVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              +      RR ++  F + +    RD    +K+E        +  L            
Sbjct: 425 SFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIE-GELAVVIRHLLTRFADQDEARRL 483

Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721
           +   +   +A    ++  D+   +        + D   +G      +     L  +Y  Y
Sbjct: 484 LYEQQKSEEALAI-KREGDSLVDFCGYLMSSVMCDGLLVGNAEIIPFSPRRYLYHAYLSY 542

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                    K ++      ++   G +    RE ++K  K     +G++         ++
Sbjct: 543 MRAHGFS--KPVTLTRFGADMP--GAMAEYGREYMKKRTK-----EGVRSNVILTDESED 593

Query: 782 S 782
            
Sbjct: 594 W 594


>gi|218961148|ref|YP_001740923.1| hypothetical protein CLOAM0836 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729805|emb|CAO80717.1| hypothetical protein CLOAM0836 [Candidatus Cloacamonas
           acidaminovorans]
          Length = 343

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 80/256 (31%), Gaps = 13/256 (5%)

Query: 24  RLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKD 83
           + G K    + +W+   LS E I +        + G   Q L   DID +D        +
Sbjct: 61  KKGKKVVSNMPQWKNSSLSVESIKQE-HNAIAIITGEASQ-LMVIDIDKRDADIYALLAE 118

Query: 84  TFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG-----HLDILGCGQYFVAY 138
               +              +     + E  KK+   ++         +DI   G    A 
Sbjct: 119 YGLEIDNYCYALTPSGGMHIYLNLSHSELWKKRYGRKTLTTTNKNIGIDIRAEGGLIFAP 178

Query: 139 NIHPKTKKEYTWTTPPHRFKVEDT-PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTW 197
                    Y W   P   +  D  P      ++ +F +    T      K        +
Sbjct: 179 PSIVTNGGFYEWVNMPVNKEDTDYDPNKLIPIMDAIFGYNNNPTPLAPIQKTITKSYFPF 238

Query: 198 TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG 257
           T   N Q    +    +        N  +++WI + +A+ +E     +G  +   ++   
Sbjct: 239 TYYPNIQDNYDQAAQLIRKLNGTIIN--YNDWIRMGIALKNEF--GKRGLSLWLLFADNS 294

Query: 258 S-TYDEENFNYKWDTF 272
           +    EE    KW++F
Sbjct: 295 AYQDTEEYLIKKWNSF 310


>gi|300724194|ref|YP_003713512.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC
           19061]
 gi|297630729|emb|CBJ91394.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC
           19061]
          Length = 812

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/426 (14%), Positives = 128/426 (30%), Gaps = 43/426 (10%)

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
           L    E V            N    R         +         +   +L+        
Sbjct: 382 LDGASETVHHYDGIVWCPVSNRDLQREMVAAFMEEKMPYSPHGISAAVDALKLQLPMMNA 441

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-------GEPSQEFLD 471
            +        +G ++G+ DL+ GQ     K  ++  +    F            + +F  
Sbjct: 442 PE-----RHLIGFRNGVFDLKIGQFRPHHKHDWLLLANDVEFNSPVSGETLHSHAPQFWH 496

Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            ++      E   +     + M L      Q F+ + G GGSGKS    +     G    
Sbjct: 497 WLNRATAHCENKAERVLAALFMVLANRYDWQLFLEVTGAGGSGKSIFAEICMMLAGKGNT 556

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTA 589
           ++A  + +   R             ++G  ++I+   ++   +     IK +TGGD +  
Sbjct: 557 VSASMAALENPR---------ERALIVGYSLIIL--PDQTRYVGDGSGIKAITGGDEVAI 605

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLE 648
              +   YS    +    +  N  +   +      RR ++  F + +   +     +   
Sbjct: 606 DPKHKQPYSTRIPAVVLAV-NNNAMSFSDRSGGVSRRRVIFNFSEVVPENERDPLLRDKI 664

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI--------DDC 700
                   +  L       +    +   +   +A +  ++GTD    +          D 
Sbjct: 665 AAELPVIIRQLLHRFADPQTARRLLAEQQKSEEALDI-KRGTDPLVDFCGYLVASHETDG 723

Query: 701 CDIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
             IG      +     L  +Y  Y +   N   K +S     +++   G +    +  + 
Sbjct: 724 LLIGNAEIVPFNPRKYLYHAYLAYMK--GNNLNKPVSVTRFGMDMP--GALAEYNQHYLR 779

Query: 758 KEWKSK 763
           K+ K  
Sbjct: 780 KKSKQG 785


>gi|260855418|ref|YP_003229309.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
 gi|257754067|dbj|BAI25569.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
          Length = 605

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/541 (13%), Positives = 162/541 (29%), Gaps = 86/541 (15%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E G+  +K++          ++      +   +        + + + Y   
Sbjct: 112 ENWREYLERERGELTEKKNVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 172 LAI---------HADSDTVHYYNGVVWEP---------------------VQDKELQRAM 201

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGD 252

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
             +  K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 253 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 312

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS          V N  +
Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYST-RIQAVVLAVNNNAM 421

Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              +      RR ++  F + +    RD   A+K+E        +  L       +    
Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFSDQDAAKRL 480

Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721
           +   +   +A    ++  D+   +        + D   +G      +     L  +Y  Y
Sbjct: 481 LYEQQKSEEALVI-KREGDSLVDFCGYLMSSVMCDGLLVGNAEIIPFSPRRYLYHAYLAY 539

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                    K ++      ++   G +    RE ++++ K      GL+         ++
Sbjct: 540 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 590

Query: 782 S 782
            
Sbjct: 591 W 591


>gi|227329979|ref|ZP_03834003.1| hypothetical protein PcarcW_22648 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 452

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 109/352 (30%), Gaps = 46/352 (13%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           E  F           +    R       + Q     S   S   +L+             
Sbjct: 99  ETFFQYQNGAWKVLPHRLLSRDIAALFQKIQAPFTASGIDSVINTLKLIVPMQAEP---- 154

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGY 476
              R +G ++G+ D  +G+     +E ++       +          + +  F   ++  
Sbjct: 155 -QRRLIGFRNGVFDTVSGEFKPHRREHWLHTVNDVDYTPFKAGENLADNAPHFWRWLTRA 213

Query: 477 FES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
             +  +  +     + M L      Q F+ + G GGSGKS L  +     G+     A  
Sbjct: 214 AGNHPDKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIAIMLAGDDNATAATI 273

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
           + I  +R   +         ++G  ++++ +  +     A  IK +TGGD +     Y +
Sbjct: 274 NTIESSRERSS---------IIGFSLIVLPDQEKWSGDGAG-IKAITGGDAVMVDPKYRD 323

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653
            YS    +    +  N  +   +      RR ++I F + I    RD    +K+      
Sbjct: 324 AYSTRIPAVILAV-NNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKI-RTELA 381

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAW 696
              +  +K              P       +         E ++  D    +
Sbjct: 382 VIVRHLMK----------RFADPNDARTLLQAQQHSAEALEIKRQADPLVDF 423


>gi|325578236|ref|ZP_08148371.1| bacteriophage P4 DNA primase [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159972|gb|EGC72101.1| bacteriophage P4 DNA primase [Haemophilus parainfluenzae ATCC
           33392]
          Length = 589

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 136/430 (31%), Gaps = 56/430 (13%)

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS- 426
           DL+  P+D          W   D         +       +  A SI SI   +   S  
Sbjct: 169 DLALNPKDRELYRYDGISWQLVDKFEFLDNAVTFFDEQDFNYSARSIESIIDTIKIQSPK 228

Query: 427 ------RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYFES 479
                   +   +G L+  T + +   +E ++       ++    +   F   +      
Sbjct: 229 MGTQVQELIAFNNGTLNRTTLEFLPHYRENWLMSYIPHEYLNSAQNTPYFDKWLEFVSGG 288

Query: 480 EE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
           +E   +     +   L   N  Q F  + G GGSGKS   N+     G Q   +    D+
Sbjct: 289 KENKKNAILAALYAVLTNRNDWQLFFEVTGDGGSGKSVFANIATLLAGAQNTESGRLVDL 348

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
            + R  E+          +G  ++I  E +     +   +K +TGGD +     +   + 
Sbjct: 349 DEPRGRES---------FVGKTLLICPEQSRYGG-DGGGLKSITGGDPVNIDPKHRTKFK 398

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
               S    IV N+            RR ++  FDK +    RD +F  K+E        
Sbjct: 399 AVI-SAVVLIVNNEATRFTERSGGIERRRVIFHFDKVVPENERDPNFMDKIER-EVGGII 456

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------DD 699
              +             + PE    A +E+         +  +D    +         +D
Sbjct: 457 YKLIH----------TFEQPETAKAALKEQQTSDEALEIKSESDHITEFCGYFYTTPQND 506

Query: 700 CCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
              IG      +    L  +Y  +           ++ R  + +LKQ GF    K +   
Sbjct: 507 GLYIGNANQGNKSRTHLYPAYLAFAVASG--ITNTLTLRNFSNSLKQ-GF-AQHKNKFEF 562

Query: 758 KEWKSKRIIK 767
            + K K   +
Sbjct: 563 SKIKGKYGYR 572


>gi|81428210|ref|YP_395210.1| putative prophage lsa1 DNA primase [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78609852|emb|CAI54899.1| Putative prophage lsa1 DNA primase [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 497

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/371 (13%), Positives = 109/371 (29%), Gaps = 24/371 (6%)

Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441
             +     +    +VE N   +            S  S+L D     +   +G+ +  T 
Sbjct: 88  YMKDKQLINRLILSVERNLNMRQCRDVYFYLETDSKRSNLSDR-KELIIVNNGVFNKNTK 146

Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGYF-ESEEVMDYFTRCVGMALL 495
           +    T +        T +             F   V+       +      + +  A+ 
Sbjct: 147 ELEPFTPDHVFISKISTNYNPNAKEPTMQGWRFSKWVTELSDGQRDKETLIWQMIASAVN 206

Query: 496 GGNKAQRFIHIR--GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
                +    +   G G +GK TL  ++    G Q   + +  +  +            L
Sbjct: 207 ANYSPETAFFLIDDGRGHTGKGTLQQILINLVGEQNCASLKLKEFDE---------RFKL 257

Query: 554 IRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
             + G  +VI  + + N  +++ A  K +T GD ++      +       + T     N 
Sbjct: 258 ATIFGKALVIGDDNDPNSYVDSVANFKSVTTGDVVSVESKGVDA-LSIRMTPTIIQSMNG 316

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
               ++    + RR   I         + +   K +  Y  +  ++ L   KA       
Sbjct: 317 APKFKDITGGFKRRLRAIKMLHQYDTSNVNRDIKDKYIYDNQVLEYIL--FKALQIDLDT 374

Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
           +       +   E     D+   + +       +       L   +  + +  +N    +
Sbjct: 375 IIETTESNQTIYEIALDNDSILDFFESEIVELSSTRLPITYLFNLFRCWCD--INNSPTK 432

Query: 733 ISTRTVTLNLK 743
           I  RT T  L 
Sbjct: 433 IKQRTFTTRLI 443


>gi|213423871|ref|ZP_03356851.1| hypothetical protein Salmonentericaenterica_41108 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 401

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 80/235 (34%), Gaps = 21/235 (8%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 137 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 196

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 197 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 256

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 257 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 306

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
           S          V N  +   +      RR ++I F + IA   RD     K+  +
Sbjct: 307 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 360


>gi|315640374|ref|ZP_07895489.1| DNA primase [Enterococcus italicus DSM 15952]
 gi|315483879|gb|EFU74360.1| DNA primase [Enterococcus italicus DSM 15952]
          Length = 512

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 101/333 (30%), Gaps = 22/333 (6%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-VSGYF----- 477
           +    +   +GI +  T +    + E        T +VE      F D   S +      
Sbjct: 137 NDKNLVVVNNGIFNRSTKRLEPFSSEYVFVNKVATNYVENAKEPHFKDWNFSEWVKELSD 196

Query: 478 ESEEVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
            +        +   +A+            +   G +GKST   L+    G     + +  
Sbjct: 197 GNPSKETLLWQMFSVAVNANYISEVAVFFLSEQGRTGKSTFQQLMVNLVGRHNTASLKIK 256

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGN 595
           +   +           L    G  +VI  + N  D    ++  K +  GD +        
Sbjct: 257 EFESD---------FKLASAYGRSLVIGDDNNPKDFNETSENFKSVVTGDSVLLNPKGKE 307

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
            +S     F      N     ++  D   RR  V+ F+        +   K +  Y  + 
Sbjct: 308 PFSTKLTPF-VIQSMNGLPRFKDITDGLQRRLRVVLFNHSYKGDKNNRLIKEKYIYDSQL 366

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
            ++ L  V     + ++        +A  E         ++ +D     E+       L 
Sbjct: 367 LEYILSKVINMEFEEVEDTE--ESRQAIHELVLENSAVLSFFEDKFLELESERLPVKFLF 424

Query: 716 KSYSEYREQELNYD--RKRISTRTVTLNLKQKG 746
           K +  + E E      R+R  T+     +++ G
Sbjct: 425 KYFQAWCEHENQPTNMRQRTFTKEFRSIVERNG 457


>gi|168798600|ref|ZP_02823607.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
 gi|189378766|gb|EDU97182.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
          Length = 608

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/541 (13%), Positives = 160/541 (29%), Gaps = 86/541 (15%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E  + A+K+           ++      +   +        + + + Y   
Sbjct: 115 ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 174

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 175 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 204

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 205 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 255

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
             +  K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 256 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 315

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 316 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASIKALEDAR---------ERA 366

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS    +    +  N  +
Sbjct: 367 LVVGFSLIILPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNSAM 424

Query: 615 FVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              +      RR ++  F + +    RD    +K+E        +  L            
Sbjct: 425 SFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIE-GELAVVIRHLLTRFADQDEARRL 483

Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721
           +   +   +A    ++  D+   +        + D   +G      +     L  +Y  Y
Sbjct: 484 LYEQQKSEEALAI-KREGDSLVDFCGYLMSSVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 542

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                    K ++      ++   G +    RE ++K  K     +G++         ++
Sbjct: 543 MRAHGFG--KPVTLTRFGADMP--GAMAEYGREYMKKRTK-----EGVRSNVILTDESED 593

Query: 782 S 782
            
Sbjct: 594 W 594


>gi|294637020|ref|ZP_06715338.1| putative P4-specific DNA primase [Edwardsiella tarda ATCC 23685]
 gi|291089789|gb|EFE22350.1| putative P4-specific DNA primase [Edwardsiella tarda ATCC 23685]
          Length = 774

 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/433 (14%), Positives = 129/433 (29%), Gaps = 65/433 (15%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           + +             +   R       R      ++K  S  ++L+      I     +
Sbjct: 351 QLLSRYEAGAWKVIYYADFARDVAALFQRLDAPFSSAKIASLVETLK-----LIVPQQQN 405

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476
            + + +G ++G+LD  TG      K+ ++       + +          +  F   +   
Sbjct: 406 PARQLIGFRNGVLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRA 465

Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
              + E  D     + M        Q F+ + G GGSGKS L  +     G     +A  
Sbjct: 466 AGFNPEKRDIILAALFMVQANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATI 525

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
             +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y N
Sbjct: 526 EMLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 575

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653
            YS    +    +  N  +   +      RR +++ F   I    RD    +K+      
Sbjct: 576 AYSTHIPAVILAV-NNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELA 633

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT----------------------- 690
              +  ++              P       + ++                          
Sbjct: 634 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADSAFDFCGYLKVLP 683

Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFI 748
           DT   ++ +   +     +    L  +Y  Y E     N     +  + + L LK+ G  
Sbjct: 684 DTSGMFMGNANIV---PRQPRTYLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQ 740

Query: 749 GGIKREKIEKEWK 761
              +R     +  
Sbjct: 741 YEKRRTNQGMQTN 753


>gi|323968126|gb|EGB63536.1| phage/plasmid primase [Escherichia coli M863]
          Length = 584

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 119/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHVAGK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR I+  FD  ++   +D    +K+         
Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVSRRRIIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 456 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G K   
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHKYIT 563

Query: 756 IEKEW 760
            + + 
Sbjct: 564 RKVKG 568


>gi|300722921|ref|YP_003712217.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC
           19061]
 gi|297629434|emb|CBJ90035.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC
           19061]
          Length = 777

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 61/426 (14%), Positives = 133/426 (31%), Gaps = 43/426 (10%)

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
           L    E V            +    R         +         S   +L+        
Sbjct: 347 LDGASETVHHYDGIIWRPVSDRDLRREMVAAFMEGKLPYSPHGINSAVDALKLQLPMMQP 406

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-------GEPSQEFLD 471
            +        +G  +G+ DL+T Q     K  ++  +    F          + +++F  
Sbjct: 407 PE-----RHLIGFNNGVFDLKTCQFRSHCKNNWLLLANDVEFNSPVSGETLKDHARQFWR 461

Query: 472 LVSGYFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            ++    + E   Y     + M L      Q F+ + GVGGSGKS    +     G    
Sbjct: 462 WLNQATANCENKAYRVLAALFMVLANRYDWQLFLEVTGVGGSGKSIFAEICSMLAGKGNT 521

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTA 589
           ++A  + +   R           + ++G  ++I+   ++   +     IK +TGGD +  
Sbjct: 522 VSASMATLENPR---------ERVLIVGYSLIIL--PDQTRYVGDGSGIKAITGGDEVAI 570

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLE 648
              +   YS    +    +  N  +   +      RR ++  F + +   +     +   
Sbjct: 571 DPKHKQPYSTRIPAVVLAV-NNNAMSFSDRSGGVSRRRVIFNFSEVVPENERDPLLRDKI 629

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW---------IDD 699
                   +  L       +    +   +   +A +  ++GTD    +         +D 
Sbjct: 630 AAELPVIIRHLLHRFVDPQTARRLLAEQQKSAEALDI-KRGTDPLVDFCGYLIASHEVDG 688

Query: 700 CCDIGENL--WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
                  +  +     L  +Y  Y +   N   K +S     +++   G +    ++ + 
Sbjct: 689 LLIGNAEIMPFNPRKYLYHAYLAYMK--GNNLNKPVSVTRFGMDMP--GALAEYSQQYLR 744

Query: 758 KEWKSK 763
           K+ K  
Sbjct: 745 KKSKQG 750


>gi|218690979|ref|YP_002399191.1| putative DNA primase from prophage [Escherichia coli ED1a]
 gi|218428543|emb|CAR09471.2| putative DNA primase from prophage (possibly fragment) [Escherichia
           coli ED1a]
          Length = 606

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 63/422 (14%), Positives = 133/422 (31%), Gaps = 43/422 (10%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            + V   +       ++ +  R               +  KS   +++            
Sbjct: 179 SDTVHYYNGVIWSPVQDKELQRTMAQIFIDEDICYSQNAIKSAVDTMKLSLPVMG----- 233

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474
           +++   +G  +G+ D  TG   +  K+ ++  ++  PF            +  F   +  
Sbjct: 234 NTARHLIGFSNGVFDTRTGDFREHDKDDWLLIASELPFTPPAEGETLATHAPNFWKWLRR 293

Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
              E++   D     + M L      Q FI + G GGSGKS +  +     G    ++A 
Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
              +   R             ++G  ++I+ +        A  IK +TGGD +     + 
Sbjct: 354 MKALEDAR---------ERALVVGFSLIILPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 403

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYT 652
             YS    +    +  N  +   +      RR ++  F + +    RD    +K+E    
Sbjct: 404 APYSTRIPAVVLAV-NNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIE-GEL 461

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704
               +  L            +   +   +A    ++  D+   +        + D   +G
Sbjct: 462 AVVIRHLLTRFSDQDEARRLLHEQQKSEEALAI-KREGDSLVDFCGYLMSSVMCDGLLVG 520

Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
                 +     L  +Y  Y         K ++      ++   G +    RE ++K  K
Sbjct: 521 NAEIIPFSPRRYLYHAYLSYMRAHGFS--KPVTLTRFGADMP--GAMAEYGREYMKKRTK 576

Query: 762 SK 763
             
Sbjct: 577 EG 578


>gi|330910991|gb|EGH39501.1| DNA primase , phage-associated / Replicative helicase RepA
           [Escherichia coli AA86]
          Length = 606

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 142/441 (32%), Gaps = 48/441 (10%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            + V   +    +  ++ +  R         +     +  KS   +++            
Sbjct: 179 SDTVHHYNGVVWEPVQDKELQRAMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMG----- 233

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474
           +++   +G  +G+ D  TG   +  K  ++  ++  PF            +  F   +  
Sbjct: 234 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 293

Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
              E++   D     + M L      Q FI + G GGSGKS +  +     G    ++A 
Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
              +   R             ++G  ++I+ +        A  IK +TGGD +     + 
Sbjct: 354 MKALEDAR---------ERALVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 403

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652
             YS    +    +  N  +   +      RR ++  F + +    RD+  A+K+E    
Sbjct: 404 APYSTRIPAVVLAV-NNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIE-GEL 461

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704
               +  L            +   +   +A    ++  D+   +        + D   +G
Sbjct: 462 AVVIRHLLTRFADQDEARRLLYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVG 520

Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
                 +     L  +Y  Y         K ++      ++   G +    RE ++++ K
Sbjct: 521 NAEIVPFSPRRYLYHAYLAYMRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTK 576

Query: 762 SKRIIKGLKLKPAFESVDDNS 782
                 GL+         ++ 
Sbjct: 577 H-----GLRSNVTLTEESEDW 592


>gi|291335467|gb|ADD95079.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C348]
          Length = 391

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 107/356 (30%), Gaps = 45/356 (12%)

Query: 444 VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502
           +   ++ Y+ +     +      +  +  +      +   +      +   L+G +  Q+
Sbjct: 1   MPFQRDFYLIQLLPYDYNPNAECETIIKWLKFTQDGNWGRVQVLRAWLRAVLMGASDIQK 60

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
           F+ I G G SGKST  NL     G++    +    + +NR             L   +++
Sbjct: 61  FVEIVGPGKSGKSTYANLCNALVGDENTTISTLEHLEKNR--------FETANLYKKKLL 112

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDD 621
           + ++       + + +K +TG D +     Y               I  N+ +   +P  
Sbjct: 113 LFNDVERYGG-SVSILKALTGRDLLRNEHKYQAGKQKPFKFDGLCMITANEPIQTTDPTS 171

Query: 622 AWWRRYIVIPFDKPI---ANRDASFAQK--------LETKYTLEAKKWFLKGVKAYISKG 670
              RR + IPF+ P    A    +                       W L      + + 
Sbjct: 172 GLARRRLTIPFNNPFRGSAKEQKTLIDMDDQGNAFGEFAPLLPGLVNWLLDMSHDQMREY 231

Query: 671 LDVDIPEVCL---KAKEEERQGTDTYQAWIDDCCDIGEN-----------------LWEE 710
           L     +          +++  ++  + W+  C     N                  + +
Sbjct: 232 LMETT-KHVKFFADYTIDQQLKSNPVKDWMHHCLVFELNTSSQIGFKKFAPQGSSTHYAK 290

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
           ++     Y+ Y E  +N +   +S       L              ++  K  RI 
Sbjct: 291 TNEW--LYASYCEFCMNSNNNIMSRSRFESLLMDIFNHQLHLNIYAKRNTKGLRIF 344


>gi|323179375|gb|EFZ64942.1| poxvirus D5 protein-like family protein [Escherichia coli 1180]
          Length = 608

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 71/541 (13%), Positives = 160/541 (29%), Gaps = 86/541 (15%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E  + A+K+           ++      +   +        + + + Y   
Sbjct: 115 ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 174

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 175 LAI---------HADSDTVHHYNSVVWEP---------------------VQDKELQRAM 204

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 205 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 255

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
             +  K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 256 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 315

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 316 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 366

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS    +    +  N  +
Sbjct: 367 LVVGFSLIILPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNSAM 424

Query: 615 FVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              +      RR ++  F + +    RD    +K+E        +  L            
Sbjct: 425 SFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIE-GELAVVIRHLLTRFADQDEARRL 483

Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721
           +   +   +A    ++  D+   +        + D   +G      +     L  +Y  Y
Sbjct: 484 LYEQQKSEEALAI-KREGDSLVDFCGYLMSSVMCDGLLVGNAEIIPFSPRRYLYHAYLSY 542

Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
                    K ++      ++   G +    RE ++K  K     +G++         ++
Sbjct: 543 MRAHGFS--KPVTLTRFGADMP--GAMAEYGREYMKKRTK-----EGVRSNVILTDESED 593

Query: 782 S 782
            
Sbjct: 594 W 594


>gi|312945751|gb|ADR26578.1| putative DNA primase from prophage [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 606

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 142/441 (32%), Gaps = 48/441 (10%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            + V   +    +  ++ +  R         +     +  KS   +++            
Sbjct: 179 SDTVHHYNGVVWEPVQDKELQRAMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMG----- 233

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474
           +++   +G  +G+ D  TG   +  K  ++  ++  PF            +  F   +  
Sbjct: 234 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 293

Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
              E++   D     + M L      Q FI + G GGSGKS +  +     G    ++A 
Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
              +   R             ++G  ++I+ +        A  IK +TGGD +     + 
Sbjct: 354 MKALEDAR---------ERALVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 403

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652
             YS    +    +  N  +   +      RR ++  F + +    RD+  A+K+E    
Sbjct: 404 APYSTRIPAVVLAV-NNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIE-GEL 461

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704
               +  L            +   +   +A    ++  D+   +        + D   +G
Sbjct: 462 AVVIRHLLTRFADQDEARRLLYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVG 520

Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
                 +     L  +Y  Y         K ++      ++   G +    RE ++++ K
Sbjct: 521 NAEIVPFSPRRYLYHAYLAYMRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTK 576

Query: 762 SKRIIKGLKLKPAFESVDDNS 782
                 GL+         ++ 
Sbjct: 577 H-----GLRSNVTLTEESEDW 592


>gi|238753953|ref|ZP_04615313.1| P4-specific DNA primase [Yersinia ruckeri ATCC 29473]
 gi|238707941|gb|EEQ00299.1| P4-specific DNA primase [Yersinia ruckeri ATCC 29473]
          Length = 777

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 127/431 (29%), Gaps = 68/431 (15%)

Query: 350 KITASIMNFLV---SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
           ++ A     L+    + ED+    +            R       + +     S   S  
Sbjct: 340 ELLAEHYQHLLAVPQVGEDLCRYEKGAWQVLPYRVLSREIAALFQKIRAPFSASGINSVL 399

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG--- 463
            +L+       T          +G ++G+ D  TGQ     K  ++       +      
Sbjct: 400 DTLKLMVPQMGTPA-----RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAG 454

Query: 464 ----EPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
               + +  F   ++     + E  +     + M L      Q F+ + G GGSGKS + 
Sbjct: 455 ENLSDHAPHFWRWLTRAAGQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMA 514

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
           ++     G     +A    +  +R             ++G  ++I+ +        A  I
Sbjct: 515 SIASLLAGKDNTTSATIDTLESSR---------ERASVVGFSLIILPDQERWSGDGAG-I 564

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
           K +TGGD +     Y + YS          V N  +   +      RR +++PF + I  
Sbjct: 565 KAITGGDAVAIDPKYRDAYSTHIP-AVILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPA 623

Query: 638 -NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG------- 689
             RD     K+            ++ +            P       E ++         
Sbjct: 624 NERDPQLLAKIT-----GELAVMVRHLMQ------RFIAPNDARALLEAQQNSDEALEIK 672

Query: 690 --TDTYQAWIDDC-----CDIGENLW---------EESHSLAKSYSEYREQELNYDRKRI 733
              D    +   C      +    L+              L  +Y  + E   +  ++ +
Sbjct: 673 RGADPLVDF---CGYLLAVNTPNGLYMGNANIIPANPRKYLYHAYLSFMEARGH--QRPM 727

Query: 734 STRTVTLNLKQ 744
           S       + Q
Sbjct: 728 SLTAFGRAVPQ 738


>gi|213613130|ref|ZP_03370956.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 649

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 21/235 (8%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  TG      K  ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETK 650
           S    +    +  N  +   +      RR ++I F + I    RD     K+  +
Sbjct: 581 STHIPAVILAV-NNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARE 634


>gi|304398649|ref|ZP_07380521.1| P4 alpha zinc-binding domain protein [Pantoea sp. aB]
 gi|304353860|gb|EFM18235.1| P4 alpha zinc-binding domain protein [Pantoea sp. aB]
          Length = 771

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 118/371 (31%), Gaps = 62/371 (16%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+ D  TG      +E ++       +    P       +  F   ++    
Sbjct: 409 RRLIGFRNGVYDTTTGTFGPHRRENWLRTVNSVDYSAPRPGENLADHAPYFYRWLTRAAG 468

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
            + +  +     + M L      Q F+ + G GGSGKS + ++     G     +A    
Sbjct: 469 HNHDKQERILAALFMVLANRYDWQMFLEVTGPGGSGKSVMASIATLLAGKDNTTSATIDT 528

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +  +R             ++G  ++I+ +  +     A  IK +TGGD +     Y + Y
Sbjct: 529 LESSR---------ERASVVGFSLIILPDQEKWSGDGAG-IKAITGGDAVAIDPKYRDAY 578

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR +++ F + I    RD     K+ T      
Sbjct: 579 STHIP-AVILAVNNNPMRFSDRSGGVSRRRVILTFPEVIPAKERDPQLLDKVST-ELAVI 636

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAWIDDC-----C 701
            +  ++              P+   +  +         E ++  D    +   C      
Sbjct: 637 VRHLMQ----------RFASPDEARELLQAQQSSGEALEIKRQADPLVDF---CGYLMPL 683

Query: 702 DIGENLWE---------ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
                L+              L  +Y  + E   +  +  +S       + Q   +   +
Sbjct: 684 STPNGLFIGNANIRPINPKRYLYHAYLSFMESRGH--QHPLSLTAFGQAVPQT--LKEYE 739

Query: 753 REKIEKEWKSK 763
           R  +++   + 
Sbjct: 740 RVLLKRRTNNG 750


>gi|168759751|ref|ZP_02784758.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
 gi|217324190|ref|ZP_03440274.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
           TW14588]
 gi|189369456|gb|EDU87872.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
 gi|217320411|gb|EEC28835.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
           TW14588]
          Length = 607

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 125/381 (32%), Gaps = 43/381 (11%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474
           +++   +G  +G+ D  TG   +  K  ++  ++  PF            +  F   +  
Sbjct: 235 NTARNLIGFSNGVFDTRTGDFREHDKNDWLLIASELPFTPPAEGETLATHAPNFWKWLRR 294

Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
              E++   D     + M L      Q FI + G GGSGKS +  +     G    ++A 
Sbjct: 295 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 354

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
              +   R             ++G  ++I+ +        A  IK +TGGD +     + 
Sbjct: 355 MKALEDAR---------ERALVVGFSLIILPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 404

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYT 652
             YS    +    +  N  +   +      RR ++  F + +    RD    +K+E    
Sbjct: 405 APYSTRIPAVVLAV-NNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIE-GEL 462

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704
               +  L            +   +   +A    ++  D+   +        + D   +G
Sbjct: 463 AVVIRHLLTRFADQDEARRLLYEQQKSEEALAI-KREGDSLVDFCGYLMSSVMCDGLLVG 521

Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
                 +     L  +Y  Y         K ++      ++   G +    RE ++K  K
Sbjct: 522 NAEIIPFSPRRYLYHAYLSYMRAHGFS--KPVTLTRFGADMP--GAMAEYGREYMKKRTK 577

Query: 762 SKRIIKGLKLKPAFESVDDNS 782
                +G++         ++ 
Sbjct: 578 -----EGVRSNVILTDESEDW 593


>gi|88807242|ref|ZP_01122754.1| hypothetical protein WH7805_11863 [Synechococcus sp. WH 7805]
 gi|88788456|gb|EAR19611.1| hypothetical protein WH7805_11863 [Synechococcus sp. WH 7805]
          Length = 831

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/489 (13%), Positives = 140/489 (28%), Gaps = 70/489 (14%)

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
               G       +  + S       ++++K              K+    +Y W+    +
Sbjct: 233 IDKDGDHQFIWTVEPKESHDKALIAWTVFKDNFA----------KRKGVGLYRWNGRHWQ 282

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
                               +  + +   +    +  +  + ++     S   S    L 
Sbjct: 283 RC-----------------PDRSDSSALLTPLHLWMDHCGWVKR---STSAINSITSELL 322

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK-PTKELYITKSTGTPFVEGEPSQEF 469
           A      T    DS    +G  +G L+  TGQ      +E ++T      +        F
Sbjct: 323 ARLS---TDAPWDSV-DLIGFANGTLNWRTGQFTPGHRREDFLTFCLDYNYEPEAKCPNF 378

Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIH-----IRGVGGSGKSTLMNLIKY 523
              +       + +++        A+   + +Q F       + G  G GK TL   +  
Sbjct: 379 HRFLREACANDDGLINLVRGGFRWAIAPKDTSQAFPIERSFDVTGRKGRGKGTLSEALTA 438

Query: 524 AFG-NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
             G +      ++S               SL  L+G R+  +   ++    +A     + 
Sbjct: 439 LVGGDHGRGLIKSSTFTN---------PNSLAGLIGKRVA-MDPDSDGRISSAGTFNAVV 488

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
             + +  +L Y +T+ +           +         +   RR I IPFD   + RD  
Sbjct: 489 SNEPVEVKLLYKDTHPQRLGVVVWRFFNDSPGASGGGVEGMGRRIITIPFDVEPSKRDPL 548

Query: 643 FAQKLETKYTLEAKKWFL-----KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
             +K+  +       W       +   A  + G      +    A  E     D    ++
Sbjct: 549 LKRKIV-EEAAGIFAWVFAMTTDEMTAALANSGTV----QSSADASIEHALERDPVVRFL 603

Query: 698 DDCCDIGEN--LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
               +         +   L K + ++  Q  +   +  S       +K+     G+  + 
Sbjct: 604 ---LETYPEGIDRIQGRDLFKQWCDWCAQVRH---ESGSETRFGGLIKKVRVGVGVDAKG 657

Query: 756 IEKEWKSKR 764
           +       R
Sbjct: 658 VAVRVSKGR 666


>gi|303251447|ref|ZP_07337623.1| putative primase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307252318|ref|ZP_07534215.1| hypothetical protein appser6_8360 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649679|gb|EFL79859.1| putative primase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306860240|gb|EFM92256.1| hypothetical protein appser6_8360 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 600

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/421 (13%), Positives = 134/421 (31%), Gaps = 36/421 (8%)

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
           L     +++    +     +N              +    +S       +L+A     + 
Sbjct: 183 LRRGSREIYAYDGKTWKQQENDDLEERAVQFFDECELGYSDSTIDRLINTLKAQLP-RMG 241

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF 477
               D     +   +G+L+  T +     +  ++T      + E   +   F   ++   
Sbjct: 242 EMPCD----LIAFDNGVLNRNTLEFKPHNRLNWLTACIPHNYDEQATNTPYFDKWLNFVS 297

Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
             +++        +   L      Q F  + G GGSGKS   N+     G +  I+A+  
Sbjct: 298 DGNQDKARNILAALYAILTNRYNWQIFFEVTGKGGSGKSVFANIATLLAGERNTISAKLE 357

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
           D    +          L       +++  E ++    N   +K ++GGD +     +   
Sbjct: 358 DFDNAK---------DLEGFEDKTLILCPEQSKYGG-NGGGLKTISGGDLLRVNPKHKKP 407

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654
           +     +    ++ N+            RR ++  F K +    RD +F +K+       
Sbjct: 408 FFT-KITALIMLINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFTEKITL-EVGG 465

Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG-E 705
             +  L      +     ++      +A  E ++ +D    +          D   +G  
Sbjct: 466 IIRKVLDAFPDSLEAKKALNTQMNSQEAL-EVKKLSDPLTDFFSYFYTTEQIDGLFVGVA 524

Query: 706 NLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
           N+  +     +  +Y  Y       +   +      + ++Q     G + + ++K  K+ 
Sbjct: 525 NMGVDKIRTHIYPAYLAY---TRAMNISELGLGNFVIGIEQALKQHGNQHDFMKKHTKTG 581

Query: 764 R 764
           R
Sbjct: 582 R 582


>gi|168756423|ref|ZP_02781430.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
 gi|168770139|ref|ZP_02795146.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
 gi|227883824|ref|ZP_04001629.1| bacteriophage P4 DNA primase [Escherichia coli 83972]
 gi|189356437|gb|EDU74856.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
 gi|189360975|gb|EDU79394.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
 gi|227839102|gb|EEJ49568.1| bacteriophage P4 DNA primase [Escherichia coli 83972]
 gi|307555753|gb|ADN48528.1| nucleoside triphosphatase [Escherichia coli ABU 83972]
          Length = 604

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 140/441 (31%), Gaps = 48/441 (10%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            + V   +    +  ++ +  R         +     +  KS   +++            
Sbjct: 177 SDTVHHYNGVVWEPVQDKELQRTMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMG----- 231

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474
           +++   +G  +G+ D  TG   +  K  ++  ++  PF            +  F   +  
Sbjct: 232 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 291

Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
              E++   D     + M L      Q F+ + G GGSGKS +  +     G    ++A 
Sbjct: 292 SVAENDRKADRVLAALFMVLANRYDWQLFLEVTGPGGSGKSVMAEICTMLAGKANTVSAS 351

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
              +   R             ++G  ++I+ +        A  IK +TGGD +     + 
Sbjct: 352 MKALEDAR---------ERALVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 401

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652
             YS          V N  +   +      RR ++  F + +    RD   A+K+E    
Sbjct: 402 APYST-RIQAVVLAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GEL 459

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704
               +  L            +   +   +A    ++  D+   +        + D   +G
Sbjct: 460 AVVIRHLLTRFSDQDEAKRLLYEQQKSEEALVI-KREGDSLVDFCGYLMSSVMCDGLLVG 518

Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
                 +     L  +Y  Y         K ++      ++   G +    RE ++++ K
Sbjct: 519 NAEIIPFSPRRYLYHAYLAYMRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTK 574

Query: 762 SKRIIKGLKLKPAFESVDDNS 782
                 GL+         ++ 
Sbjct: 575 H-----GLRSNVILTEDSEDW 590


>gi|269140755|ref|YP_003297456.1| hypothetical protein ETAE_3414 [Edwardsiella tarda EIB202]
 gi|267986416|gb|ACY86245.1| hypothetical protein ETAE_3414 [Edwardsiella tarda EIB202]
          Length = 775

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 116/389 (29%), Gaps = 69/389 (17%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-------GEPSQEFLDLVSGYFE 478
            R +G ++G+LD  TG      K  ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTSTGIFSPHCKSHWLRTLCDVDFTPPVAGETLETHAPNFWRWLDRAAG 470

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              +  D     + M L      Q F+ + G GGSGKS L  +     G     +A+   
Sbjct: 471 GRADKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGADNATSADIDT 530

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y N Y
Sbjct: 531 LEDPRKR---------ASLIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPY 580

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR +++ F + I    RD     K+        
Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKI-------- 631

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
                +              P       + +         ++  D    +    C   E 
Sbjct: 632 ---ACELAVIVRQLMQQFSDPMTARTLLQAQQNSDEALCIKRDADPAFDF----CGYLEA 684

Query: 707 LWEESH---------------SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
           L E                   L  +Y  Y E             T++L +  KG    +
Sbjct: 685 LPEPDGMYIGNANIIPRQPRLYLYHAYLAYMEAHG-------YKNTLSLTMFGKGLPAML 737

Query: 752 KREKIEKEWKSKRIIKGLKLKPAFESVDD 780
           K   +  E + K   +G++   A     +
Sbjct: 738 KEYGVNYEKRRKN--QGIQTNLALREESN 764


>gi|326338726|gb|EGD62546.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125]
          Length = 604

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 140/441 (31%), Gaps = 48/441 (10%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            + V   +    +  ++ +  R         +     +  KS   +++            
Sbjct: 177 SDTVHHYNGVVWEPVQDKELQRTMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMG----- 231

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474
           +++   +G  +G+ D  TG   +  K  ++  ++  PF            +  F   +  
Sbjct: 232 NAARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 291

Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
              E++   D     + M L      Q F+ + G GGSGKS +  +     G    ++A 
Sbjct: 292 SVAENDRKADRVLAALFMVLANRYDWQLFLEVTGPGGSGKSVMAEICTMLAGKANTVSAS 351

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
              +   R             ++G  ++I+ +        A  IK +TGGD +     + 
Sbjct: 352 MKALEDAR---------ERALVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 401

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652
             YS          V N  +   +      RR ++  F + +    RD   A+K+E    
Sbjct: 402 APYST-RIQAVVLAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GEL 459

Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704
               +  L            +   +   +A    ++  D+   +        + D   +G
Sbjct: 460 AVVIRHLLTRFSDQDEAKRLLYEQQKSEEALVI-KREGDSLVDFCGYLMSSVMCDGLLVG 518

Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
                 +     L  +Y  Y         K ++      ++   G +    RE ++++ K
Sbjct: 519 NAEIIPFSPRRYLYHAYLAYMRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTK 574

Query: 762 SKRIIKGLKLKPAFESVDDNS 782
                 GL+         ++ 
Sbjct: 575 H-----GLRSNVILTEDSEDW 590


>gi|90962177|ref|YP_536093.1| DNA primase [Lactobacillus phage Sal4]
 gi|90821371|gb|ABE00010.1| DNA primase [Lactobacillus phage Sal4]
 gi|300214851|gb|ADJ79267.1| DNA primase [Lactobacillus salivarius CECT 5713]
          Length = 516

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 107/330 (32%), Gaps = 25/330 (7%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-VSGYF----- 477
            S   +   +G+ +  T +          T    T +        F    +S +F     
Sbjct: 140 ESRNLIIVGNGVFNKNTKKLEPYNPRYIFTSKISTNYNPQAQEPNFKGWSLSKWFKDIAE 199

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKSTLMNLIKYAFGNQYVINAEA 535
              E      + +  A+         I +   G G +GKST   L++   G       + 
Sbjct: 200 NDNEKEILLWQSLACAINPNLTPDVAIFLVDNGQGRTGKSTFERLLENLVGIDNHAPLKL 259

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYG 594
            +  ++           L    G +++I  + N ND    ++  K++  G+ +       
Sbjct: 260 KEFEED---------FKLANAQGVKLIIGDDNNPNDYNKTSENFKRVATGETILVNPKRL 310

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
             +S    +       N     ++  DA  RR  +I F+    ++ A+   K +      
Sbjct: 311 PPFST-QFNCFIVQSMNGLPRFKDDSDALLRRIKIIKFNHQYNDKTANKDIKEKYIKDKR 369

Query: 655 AKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
             +W L      I    D     E   +  +E +   D    ++++  +  ++       
Sbjct: 370 LLEWIL---SKVIVMDFDFMIDTEESRQEIKELKIANDPVAYYVNEHINDLKSQRLPIVF 426

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLK 743
           L K +    + E N   +++   T T  L+
Sbjct: 427 LFKHFQATSDYENNP--QKMKQSTFTRRLR 454


>gi|317506243|ref|ZP_07964062.1| phage/plasmid primase [Segniliparus rugosus ATCC BAA-974]
 gi|316255489|gb|EFV14740.1| phage/plasmid primase [Segniliparus rugosus ATCC BAA-974]
          Length = 775

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 82/282 (29%), Gaps = 21/282 (7%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG--YFESEE 481
           S    +  ++G+L+  TG+K+    +          +        +   +        E+
Sbjct: 353 SDEPLINLKNGMLNWVTGEKLDHDPKYLSAYQFPVDYDPEATCPVYEAWLRESTLVGGED 412

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
                   +   +       + + + G   SGKSTLM L++   G       E   +   
Sbjct: 413 QTLILESVLSQLIDFTAPPTKALFLTGPTKSGKSTLMELMEALVGGDLTSAIEFHKMED- 471

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
                     S+  L G R+ I ++   N     A  K++TG D + A   +G  + +  
Sbjct: 472 --------PFSVAELYGMRLNIDADMPANYVPEVATFKKLTGRDKINANRKFGRMF-KFK 522

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ--KLETKYTLEAKKWF 659
                    NK   V     A+  R +   F   +   +    +   L            
Sbjct: 523 NFAVLIFSANKMPAVGERSRAFLSRAVPASFPHSLEGSEKMNGKLPALLKAELPGVLNRL 582

Query: 660 LKGVKAYISK-----GLDVDIPEVCLKAKEEERQGTDTYQAW 696
           +  ++   ++     G     P        E          +
Sbjct: 583 IMALRERKARAETQGGDGFLPPN--KTVMREFEASISIAHEF 622


>gi|190150075|ref|YP_001968600.1| primase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|307263408|ref|ZP_07545024.1| hypothetical protein appser13_8250 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915206|gb|ACE61458.1| putative primase [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|306871286|gb|EFN03014.1| hypothetical protein appser13_8250 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 600

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/421 (13%), Positives = 134/421 (31%), Gaps = 36/421 (8%)

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
           L     +++    +     +N              +    +S       +L+A     + 
Sbjct: 183 LRRGSREIYAYDGKTWKQQENDDLEERAVQFFDECELGYSDSTIDRLINTLKAQLP-RMG 241

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF 477
               D     +   +G+L+  T +     +  ++T      + E   +   F   ++   
Sbjct: 242 EMPCD----LIAFDNGVLNRNTLEFKPHNRLNWLTACIPHNYDEQATNTPHFDKWLNFVS 297

Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
             +++        +   L      Q F  + G GGSGKS   N+     G +  I+A+  
Sbjct: 298 DGNQDKARNILAALYAILTNRYNWQIFFEVTGKGGSGKSVFANIATLLAGERNTISAKLE 357

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
           D    +          L       +++  E ++    N   +K ++GGD +     +   
Sbjct: 358 DFDNAK---------DLEGFEDKTLILCPEQSKYGG-NGGGLKTISGGDLLRVNPKHKKP 407

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654
           +     +    ++ N+            RR ++  F K +    RD +F +K+       
Sbjct: 408 FFT-KITALIMLINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFTEKITL-EVGG 465

Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG-E 705
             +  L      +     ++      +A  E ++ +D    +          D   +G  
Sbjct: 466 IIRKVLDTFPDSLEAKKALNTQMNSQEAL-EVKKLSDPLTDFFSYFYTTEQIDGLFVGVA 524

Query: 706 NLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
           N+  +     +  +Y  Y       +   +      + ++Q     G + + ++K  K+ 
Sbjct: 525 NMGVDKIRTHIYPAYLAY---TRAMNISELGLGNFVIGIEQALKQHGNQHDFMKKHTKTG 581

Query: 764 R 764
           R
Sbjct: 582 R 582


>gi|238784156|ref|ZP_04628169.1| P4-specific DNA primase [Yersinia bercovieri ATCC 43970]
 gi|238714865|gb|EEQ06864.1| P4-specific DNA primase [Yersinia bercovieri ATCC 43970]
          Length = 777

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/431 (14%), Positives = 126/431 (29%), Gaps = 68/431 (15%)

Query: 350 KITASIMNFLV---SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
           ++ A     L+    + ED+                 R       + +     S   S  
Sbjct: 340 ELLAEHYQHLLAVPQVGEDLCRYEHGAWQVLPYRVLSREIAALFQKIRAPFSASGINSVL 399

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG--- 463
            +L+       T          +G ++G+ D  TGQ     K  ++       +      
Sbjct: 400 DTLKLMVPQMGTPA-----RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAG 454

Query: 464 ----EPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
               + +  F   ++     + E  +     + M L      Q F+ + G GGSGKS + 
Sbjct: 455 ENLSDHAPHFWRWLTRAAGQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMA 514

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
           ++     G     +A    +  +R             ++G  ++I+ +        A  I
Sbjct: 515 SIASLLAGKDNTTSATIDTLESSR---------ERASVVGFSLIILPDQERWSGDGAG-I 564

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
           K +TGGD +     Y + YS          V N  +   +      RR +++PF + I  
Sbjct: 565 KAITGGDAVAIDPKYRDAYSTHIP-AVILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPA 623

Query: 638 -NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG------- 689
             RD     K+            ++ +            P       E ++         
Sbjct: 624 NERDPQLLAKIT-----GELAVMVRHLMQ------RFTAPNDARVLLEAQQNSDEALEIK 672

Query: 690 --TDTYQAWIDDC-----CDIGENLW---------EESHSLAKSYSEYREQELNYDRKRI 733
              D    +   C      +    L+              L  +Y  + E   +  ++ +
Sbjct: 673 RGADPLVDF---CGYLLAVNTPNGLYMGNANIIPANPRKYLYHAYLSFMEARGH--QRPM 727

Query: 734 STRTVTLNLKQ 744
           S       + Q
Sbjct: 728 SLTAFGRAVPQ 738


>gi|168009191|ref|XP_001757289.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162691412|gb|EDQ77774.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 384

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 113/365 (30%), Gaps = 79/365 (21%)

Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
            E     +K   F  ++D RR+ +   +                   +LLDS    +G +
Sbjct: 21  METIEPATKIMDFIQSSDNRRKMMYTCAGM----------LYKEGFEELLDSRRDVIGMK 70

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGM 492
            G+ D    +  +   + YIT ST  PF+  + + E  +         EV+D   +    
Sbjct: 71  GGVYDFTKDKFRRMEPDDYITLSTRIPFIPLDYNSEVTN---------EVLDLLAKVF-- 119

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
                                                       DI +        + P 
Sbjct: 120 -----------------------------------------PNEDIRRYFIRFISSSTPE 138

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           L  L G  I  + E +E D++N   +K++TG D +  R  Y         +    ++ N+
Sbjct: 139 LAMLKGRLIAFVQEPDEGDKLNLGVMKELTGNDSLYIRGLYEEGTI-ILQTTKFVLIANR 197

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIAN-------------RDASFAQKLETKYTLEAKKWF 659
              +   D A W R  V+PF     +             +D +F+ K+         +  
Sbjct: 198 IPQMSMFDKAVWSRVRVMPFVSMFVDKIESSHDSLTTHLKDINFSNKIPL-LAPVFMRLV 256

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
           ++  K Y++ GL  +         E      D +  ++    +           L  +Y 
Sbjct: 257 IEEYKQYLTYGL--EESNEVKDCTETICVSNDIFGQFLSANVEKNSKSIVAIKELYDTYK 314

Query: 720 EYREQ 724
            + + 
Sbjct: 315 YWSKD 319


>gi|238787759|ref|ZP_04631556.1| P4-specific DNA primase [Yersinia frederiksenii ATCC 33641]
 gi|238724102|gb|EEQ15745.1| P4-specific DNA primase [Yersinia frederiksenii ATCC 33641]
          Length = 777

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 123/417 (29%), Gaps = 65/417 (15%)

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
            + ED+                 R      ++ +     S   S   +L+       T  
Sbjct: 354 QVGEDLCRYENGAWQVLPYRVLSREIAALFHKIRAPFSASGINSVLDTLKLMVPQMGTPA 413

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLV 473
                   +G ++G+ D  TGQ     K  ++       +          + +  F   +
Sbjct: 414 -----RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAGENLSDHAPHFWRWL 468

Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           +     + E  +     + M L      Q F+ + G GGSGKS + ++     G     +
Sbjct: 469 TRAAGQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMASIASLLAGKDNTTS 528

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
           A    +  +R             ++G  ++I+ +        A  IK +TGGD +     
Sbjct: 529 ATIDTLESSR---------ERASVVGFSLIILPDQERWSGDGAG-IKAITGGDAVAIDPK 578

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
           Y + YS          V N  +   +      RR +++PF + I    RD     K+ T 
Sbjct: 579 YRDAYSTHIP-AVILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPANERDPLLLAKI-TG 636

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---------TDTYQAWIDDC- 700
                 +  ++              P       E ++            D    +   C 
Sbjct: 637 ELAVIVRHLMQ----------RFTAPNDARALLEAQQNSDEALEIKRGADPLVDF---CG 683

Query: 701 ----CDIGENLW---------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
                +    L+              L  +Y  + E   +  ++ +S       + Q
Sbjct: 684 YLLAVNTPNGLYMGNANIIPANPRKYLYHAYLSFMEARGH--QRPMSLTAFGRAVPQ 738


>gi|315291925|gb|EFU51277.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
           153-1]
          Length = 584

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 456 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 563

Query: 756 IEKEW 760
            + + 
Sbjct: 564 RKVKG 568


>gi|331682252|ref|ZP_08382871.1| bacteriophage P4 DNA primase [Escherichia coli H299]
 gi|331079883|gb|EGI51062.1| bacteriophage P4 DNA primase [Escherichia coli H299]
          Length = 583

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 118/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 227 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 286

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 287 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIATLLAGKQNTVSAEMTSL 346

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 347 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 396

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  +    +D    +K+         
Sbjct: 397 TII-RAVVLATNNDPMIFTERAGGVSRRRVIFRFDNIVREDEKDKELPEKI-AAEIPVII 454

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTY------QAWIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 455 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVVELCAALEFLEEAR 504

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K +S       ++    + G +   
Sbjct: 505 GLMMGGGGDTVKYTTRNSLYRVYMAFMAYTGKG--KCLSVNEFGKAMRSAAKVYGYEYIT 562

Query: 756 IEKEW 760
            + + 
Sbjct: 563 RKVKG 567


>gi|156932824|ref|YP_001436740.1| hypothetical protein ESA_00620 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531078|gb|ABU75904.1| hypothetical protein ESA_00620 [Cronobacter sakazakii ATCC BAA-894]
          Length = 771

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 118/372 (31%), Gaps = 64/372 (17%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+ D  TG      +E ++       +    P       +  F   ++    
Sbjct: 409 RRLIGFRNGVFDTVTGTFGPHRRENWLRTVNSVDYTAPRPEENLKEHAPSFWQWLTRAAG 468

Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              +  +     + M L      Q F+ + G GGSGKS + ++     G     +A    
Sbjct: 469 RSHDKQERILAALFMVLANRYDWQMFLEVTGPGGSGKSVMASIATLLAGKDNTTSATIDT 528

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +  +R             ++G  ++I+ +  +     A  IK +TGGD +     Y + Y
Sbjct: 529 LESSR---------ERASVVGYSLIILPDQEKWSGDGAG-IKAITGGDAVAIDPKYRDAY 578

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
           S          V N  +   +      RR +++ F + I    RD     K+        
Sbjct: 579 STHIP-AVILAVNNNPMRFSDRSGGVSRRRVILTFPEVIPAKERDPKLLDKIS-AELAVI 636

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDI--- 703
            +  ++             +P+   +  + +         ++ +D    +    C     
Sbjct: 637 VRHLMQ----------RFALPDEARELLQAQQSSGEALDIKRQSDPLVDF----CGYLMP 682

Query: 704 ----------GENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
                       N+        L  +Y  + E   +  +  +S       + Q   +   
Sbjct: 683 LSTPNGLFMGNANIRPINPKRYLYHAYLSFMESRGH--QHPLSLTAFGQAVPQT--LKEY 738

Query: 752 KREKIEKEWKSK 763
           +R  +++   + 
Sbjct: 739 ERVLLKRRTSNG 750


>gi|320197682|gb|EFW72293.1| DNA primase, phage-associated / Replicative helicase RepA
           [Escherichia coli WV_060327]
          Length = 583

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 118/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGYFE- 478
             L   +G+L+L+TG+    + E + T   G  +          + +  F   +      
Sbjct: 227 DLLPFTNGVLNLKTGEFSPHSPEHWSTTHNGIEYTPPVAGENIRDNAPNFHKWLEHAAGK 286

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 287 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIATLLAGKQNTVSAEMTSL 346

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 347 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 396

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  +    +D    +K+         
Sbjct: 397 TII-RAVVLATNNDPMIFTERAGGVSRRRVIFRFDNIVREDEKDKELPEKI-AAEIPVII 454

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTY------QAWIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 455 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVVELCAALEFLEEAR 504

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K +S       ++    + G +   
Sbjct: 505 GLMMGGGGDSVKYTTRNSLYRVYMAFMAYTGKG--KCLSVNEFGKAMRSAAKVYGYEYIT 562

Query: 756 IEKEW 760
            + + 
Sbjct: 563 RKVKG 567


>gi|67922846|ref|ZP_00516345.1| Poxvirus D5 protein [Crocosphaera watsonii WH 8501]
 gi|67855339|gb|EAM50599.1| Poxvirus D5 protein [Crocosphaera watsonii WH 8501]
          Length = 478

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 110/320 (34%), Gaps = 39/320 (12%)

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           + G    Q+++ + G GG+GKSTL+ L     G + V N     + +        +N   
Sbjct: 1   MTGRCDWQKYLELIGPGGTGKSTLIRLAIALVGFENVHNTTFKKLEK--------SNFET 52

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             +   R+V+I++       + + +K +TG D +               +    +  N++
Sbjct: 53  ASIKDKRLVVITDAERYTG-DVSTLKALTGQDTLPYEKKRQQATGGFKPTCMVILAANEN 111

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN---------RDASFAQKLETKYTLEAKKWFLKGVK 664
           +   +      RR + +     I+           D          Y      W L G+ 
Sbjct: 112 IKTSDYTSGLERRRVTVKMKNKISGIKQKDLINISDEGLITGEFASYLPGLLNWVL-GLD 170

Query: 665 AYISKGLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCCDIGENLW------EESHSLA 715
              ++ L  ++    +K   E  +     +   AW++       +         +S  + 
Sbjct: 171 GDKARHLINNVNNRSIKMTLERVETLIENNPIAAWLNANIVYDPSAQTHVGLAVKSADIE 230

Query: 716 KSY--------SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
           + Y        + Y       + K ++ +  +  L           +  + E ++ R I+
Sbjct: 231 EGYLRANELLYTNYCAYCDASNLKPVNMQRFSALLLDFCQNQLNLSDVFKDENRNGRYIQ 290

Query: 768 GLKLKPAFESVDDNSNIIDF 787
           GL+++   E  D +   I+F
Sbjct: 291 GLRIR---EVNDLDPRFIEF 307


>gi|240119330|dbj|BAH79195.1| putative DNA primase [Escherichia coli O157:H7]
          Length = 584

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 456 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 563

Query: 756 IEKEW 760
            + + 
Sbjct: 564 RKVKG 568


>gi|307627703|gb|ADN72007.1| nucleic acid independent nucleoside triphosphatase; phage DNA
           primase [Escherichia coli UM146]
          Length = 535

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 179 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 238

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 239 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 298

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 299 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 348

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 349 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 406

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 407 RRLLA----------NFADPEKARALLIEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 456

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 457 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 514

Query: 756 IEKEW 760
            + + 
Sbjct: 515 RKVKG 519


>gi|300902120|ref|ZP_07120125.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 84-1]
 gi|301306883|ref|ZP_07212930.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
           124-1]
 gi|300405785|gb|EFJ89323.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 84-1]
 gi|300837892|gb|EFK65652.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
           124-1]
 gi|315252746|gb|EFU32714.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 85-1]
 gi|320180578|gb|EFW55508.1| DNA primase , phage-associated / Replicative helicase RepA
           [Shigella boydii ATCC 9905]
          Length = 584

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 120/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 456 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++    +  +K    + G +   
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMKPAAKVYGHEYIT 563

Query: 756 IEKEW 760
            + + 
Sbjct: 564 RKVKG 568


>gi|194434203|ref|ZP_03066470.1| bacteriophage P4 DNA primase [Shigella dysenteriae 1012]
 gi|194417532|gb|EDX33634.1| bacteriophage P4 DNA primase [Shigella dysenteriae 1012]
 gi|332096153|gb|EGJ01156.1| putative bacteriophage P4 DNA primase [Shigella dysenteriae 155-74]
          Length = 582

 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 79/566 (13%), Positives = 165/566 (29%), Gaps = 71/566 (12%)

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300
             S     A++W +Q      +N    W   +   E+            +  +    +  
Sbjct: 25  AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
                         +         ++    + W +         +  L            
Sbjct: 85  VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144

Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416
               +   L  E  D    +  S+    W    +     +E + +  +      A     
Sbjct: 145 MADSERAQLLAERFDGVCVHPESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204

Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
           + ++ +++           S   L   +G LDL+TG+    T E +IT   G  +    P
Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264

Query: 466 -------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
                  +  F   +          M      + M +      Q FI   G GGSGKST 
Sbjct: 265 GENIRDNAPNFHKWLKHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            ++     G Q  ++AE + +                +++GSR++++++  +        
Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGTG- 374

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           IK++TGGD +     Y   ++            N  +          RR ++  FD  ++
Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433

Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687
              +D    +K+         +  L           +   PE       E+R        
Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDPEKARALLLEQRDGDEALAI 482

Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            Q TD          ++++   +          +   +SL + Y  +         K ++
Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540

Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760
                  +K    + G +    + + 
Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566


>gi|307261229|ref|ZP_07542904.1| hypothetical protein appser12_7930 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868960|gb|EFN00762.1| hypothetical protein appser12_7930 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 600

 Score =  133 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/421 (13%), Positives = 134/421 (31%), Gaps = 36/421 (8%)

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
           L     +++    +     +N              +    +S       +L+A     + 
Sbjct: 183 LRRGSREIYAYDGKTWKQQENDDLEERAVQFFDECELGYSDSTIDRLINTLKAQLP-RMG 241

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF 477
               D     +   +G+L+  T +     +  ++T      + E   +   F   ++   
Sbjct: 242 EMPCD----LIAFDNGVLNRNTLEFKPHNQLNWLTACIPHNYDEQATNTPYFDKWLNFVS 297

Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
             +++        +   L      Q F  + G GGSGKS   N+     G +  I+A+  
Sbjct: 298 DGNQDKARNILAALYAILTNRYNWQIFFEVTGKGGSGKSVFANIATLLAGERNTISAKLE 357

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
           D    +          L       +++  E ++    N   +K ++GGD +     +   
Sbjct: 358 DFDNAK---------DLEGFEDKTLILCPEQSKYGG-NGGGLKTISGGDLLRVNPKHKKP 407

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654
           +     +    ++ N+            RR ++  F K +    RD +F +K+       
Sbjct: 408 FFT-KITALIMLINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFTEKITL-EVGG 465

Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG-E 705
             +  L      +     ++      +A  E ++ +D    +          D   +G  
Sbjct: 466 IIRKVLDTFPDSLEAKKALNTQMNSQEAL-EVKKLSDPLTDFFSYFYTTEQIDGLFVGVA 524

Query: 706 NLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
           N+  +     +  +Y  Y       +   +      + ++Q     G + + ++K  K+ 
Sbjct: 525 NMGVDKIRTHIYPAYLAY---TRAMNISELGLGNFVIGIEQALKQHGNQHDFMKKHTKTG 581

Query: 764 R 764
           R
Sbjct: 582 R 582


>gi|315615444|gb|EFU96076.1| putative DNA primase [Escherichia coli 3431]
          Length = 584

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 120/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 456 RRLLA----------NFTDPEKARALLIEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++    +  +K    + G +   
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMKPAAKVYGHEYIT 563

Query: 756 IEKEW 760
            + + 
Sbjct: 564 RKVKG 568


>gi|327252446|gb|EGE64105.1| phage/plasmid primase, P4 family, C-terminal domain protein
           [Escherichia coli STEC_7v]
          Length = 582

 Score =  133 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 79/566 (13%), Positives = 165/566 (29%), Gaps = 71/566 (12%)

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300
             S     A++W +Q      +N    W   +   E+            +  +    +  
Sbjct: 25  AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
                         +         ++    + W +         +  L            
Sbjct: 85  VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144

Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416
               +   L  E  D    +  S+    W    +     +E + +  +      A     
Sbjct: 145 MADSERAQLLAERFDGVCVHPESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204

Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
           + ++ +++           S   L   +G LDL+TG+    T E +IT   G  +    P
Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264

Query: 466 -------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
                  +  F   +          M      + M +      Q FI   G GGSGKST 
Sbjct: 265 GENIRDNAPNFHKWLEHAAGKDPSKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            ++     G Q  ++AE + +                +++GSR++++++  +        
Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQQKYTGEGTG- 374

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           IK++TGGD +     Y   ++            N  +          RR ++  FD  ++
Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433

Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687
              +D    +K+         +  L           +   PE       E+R        
Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFADPEKARALLIEQRDGDEALAI 482

Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            Q TD          ++++   +          +   +SL + Y  +         K ++
Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540

Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760
                  +K    + G +    + + 
Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566


>gi|26247364|ref|NP_753404.1| hypothetical protein c1495 [Escherichia coli CFT073]
 gi|26107765|gb|AAN79964.1|AE016759_238 Hypothetical protein c1495 [Escherichia coli CFT073]
          Length = 584

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 456 RRLLA----------NFADPEKARALLIEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 563

Query: 756 IEKEW 760
            + + 
Sbjct: 564 RKVKG 568


>gi|238797084|ref|ZP_04640587.1| P4-specific DNA primase [Yersinia mollaretii ATCC 43969]
 gi|238719129|gb|EEQ10942.1| P4-specific DNA primase [Yersinia mollaretii ATCC 43969]
          Length = 777

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/431 (15%), Positives = 128/431 (29%), Gaps = 68/431 (15%)

Query: 350 KITASIMNFLV---SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
           ++ A     L+    + ED+    +            R       + +     S   S  
Sbjct: 340 ELLAEHYQHLLAVPQVGEDLCRYEKGAWQVLPYRVLSREIAALFQKIRAPFSASGINSVL 399

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG--- 463
            +L+       T          +G ++G+ D  TGQ     K  ++       +      
Sbjct: 400 DTLKLMVPQMGTPA-----RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAG 454

Query: 464 ----EPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
               + +  F   ++     + E  +     + M L      Q F+ + G GGSGKS + 
Sbjct: 455 ENLSDHAPHFWRWLTRAAGQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMA 514

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
           ++     G     +A    +  +R             ++G  ++I+ +        A  I
Sbjct: 515 SIASLLAGKDNTTSATIDTLESSR---------ERASVVGFSLIILPDQERWSGDGAG-I 564

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
           K +TGGD +     Y + YS          V N  +   +      RR +++PF + I  
Sbjct: 565 KAITGGDAVAIDPKYRDAYSTHIP-AVILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPA 623

Query: 638 -NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG------- 689
             RD     K+ T       +  ++              P       E ++         
Sbjct: 624 NERDPLLLAKI-TGELAVIVRHLMQ----------CFTAPNDARALLEAQQNSDEALEIK 672

Query: 690 --TDTYQAWIDDC-----CDIGENLW---------EESHSLAKSYSEYREQELNYDRKRI 733
              D    +   C      +    L+              L  +Y  + E   +  ++ +
Sbjct: 673 RGADPLVDF---CGYLLAVNTPNGLYMGNANIIPANPRKYLYHAYLSFMEARGH--QRPM 727

Query: 734 STRTVTLNLKQ 744
           S       + Q
Sbjct: 728 SLTAFGRAVPQ 738


>gi|218689534|ref|YP_002397746.1| nucleic acid independent nucleoside triphosphatase; phage DNA
           primase [Escherichia coli ED1a]
 gi|218427098|emb|CAR07979.2| nucleic acid independent nucleoside triphosphatase; phage DNA
           primase [Escherichia coli ED1a]
          Length = 582

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 120/374 (32%), Gaps = 63/374 (16%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G+LDL+ G+    T E +IT   G  +    P       +  F   +      
Sbjct: 226 DLLPFANGVLDLKAGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 285

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 286 DPRKMMRICAALYMIMANRYDWQMFIEATGEGGSGKSTFTHIASLLAGKQNTVSAEMTSL 345

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 346 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 395

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  +    +D    +K          
Sbjct: 396 AVI-RAVVLATNNNPMIFTERAGGVSRRRVIFRFDNIVREDEKDKDLPEK-VAAEIPVII 453

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 454 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 503

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++    +  +K           K
Sbjct: 504 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMK--------PAAK 553

Query: 756 IEKEWKSKRIIKGL 769
           +       R +KG+
Sbjct: 554 VYGHEYITRRVKGV 567


>gi|218700360|ref|YP_002407989.1| nucleic acid independent nucleoside triphosphatase; phage DNA
           primase [Escherichia coli IAI39]
 gi|218370346|emb|CAR18149.1| nucleic acid independent nucleoside triphosphatase; phage DNA
           primase [Escherichia coli IAI39]
          Length = 582

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 120/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT + G  +    P       +  F   +      
Sbjct: 226 DLLPFANGALDLKTGEFSPHTPENWITTNNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 285

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 286 DSRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 345

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 346 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 395

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 396 TVI-RAVVLATNNNPMIFTERAGGVSRRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 453

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 454 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 503

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 504 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 561

Query: 756 IEKEW 760
            + + 
Sbjct: 562 RKVKG 566


>gi|320178845|gb|EFW53808.1| DNA primase , phage-associated / Replicative helicase RepA
           [Shigella boydii ATCC 9905]
          Length = 584

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 120/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G+L+L+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFTNGVLNLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLDHAAGK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 398 AVI-RAVVLATDNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQA------WIDDCC 701
           +  L           +   PE       E+         +Q TD          ++++  
Sbjct: 456 RRLLA----------NFTDPEKARALLLEQHDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 563

Query: 756 IEKEW 760
            + + 
Sbjct: 564 RKVKG 568


>gi|217324275|ref|ZP_03440359.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str.
           TW14588]
 gi|217320496|gb|EEC28920.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str.
           TW14588]
          Length = 584

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 121/374 (32%), Gaps = 63/374 (16%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLDHAAGK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  +    +D    +K+         
Sbjct: 398 TVI-RAVVLATNNNPMIFTERAGGVSRRRVIFRFDNIVREDEKDKELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 456 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++    +  +K           K
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMK--------PAAK 555

Query: 756 IEKEWKSKRIIKGL 769
           +       R +KG+
Sbjct: 556 VYGHEYITRRVKGV 569


>gi|237707148|ref|ZP_04537629.1| bacteriophage P4 DNA primase [Escherichia sp. 3_2_53FAA]
 gi|226898358|gb|EEH84617.1| bacteriophage P4 DNA primase [Escherichia sp. 3_2_53FAA]
 gi|294493409|gb|ADE92165.1| conserved hypothetical protein [Escherichia coli IHE3034]
 gi|323958175|gb|EGB53884.1| phage/plasmid primase [Escherichia coli H263]
          Length = 582

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/566 (13%), Positives = 165/566 (29%), Gaps = 71/566 (12%)

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300
             S     A++W +Q      +N    W   +   E+            +  +    +  
Sbjct: 25  AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
                         +         ++    + W +         +  L            
Sbjct: 85  VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144

Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416
               +   L  E  D    +  S+    W    +     +E + +  +      A     
Sbjct: 145 MADSERAQLLAERFDGVCVHPESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204

Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
           + ++ +++           S   L   +G LDL+TG+    T E +IT   G  +    P
Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264

Query: 466 -------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
                  +  F   +          M      + M +      Q FI   G GGSGKST 
Sbjct: 265 GENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            ++     G Q  ++AE + +                +++GSR++++++  +        
Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGTG- 374

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           IK++TGGD +     Y   ++            N  +          RR ++  FD  ++
Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433

Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687
              +D    +K+         +  L           +   PE       E+R        
Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFADPEKARALLIEQRDGDEALAI 482

Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            Q TD          ++++   +          +   +SL + Y  +         K ++
Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540

Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760
                  +K    + G +    + + 
Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566


>gi|323969627|gb|EGB64914.1| phage/plasmid primase [Escherichia coli TA007]
          Length = 582

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 122/374 (32%), Gaps = 63/374 (16%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 226 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 285

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 286 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 345

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 346 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 395

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +++         
Sbjct: 396 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPERI-AAEIPVII 453

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 454 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 503

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++    +  +K           K
Sbjct: 504 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMK--------PAAK 553

Query: 756 IEKEWKSKRIIKGL 769
           +       R IKG+
Sbjct: 554 VYGHEYITRRIKGV 567


>gi|188494151|ref|ZP_03001421.1| phage/plasmid P4 DNA primase domain protein [Escherichia coli
           53638]
 gi|188489350|gb|EDU64453.1| phage/plasmid P4 DNA primase domain protein [Escherichia coli
           53638]
          Length = 584

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 118/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTAPAPGENIRDNAPNFHKWLDHAAGK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPGKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  +  A +D    +K+         
Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVNEAEKDRELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 456 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRT--KPLNVNDFGKAMKPAAKVYGHEYIT 563

Query: 756 IEKEW 760
            +   
Sbjct: 564 RKING 568


>gi|284008872|emb|CBA75685.1| phage primase [Arsenophonus nasoniae]
          Length = 477

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 113/343 (32%), Gaps = 50/343 (14%)

Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
            +D+  + +   F+   +        N          E      I    LD     +G  
Sbjct: 150 IKDSELSREMANFFTENNTHFSMRRINGVIDVLKVIAEP-----IRERDLD----VIGFA 200

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVE-------GEPSQEFLDLVSGYFE-SEEVMD 484
           +G+L+ +  +      + ++    G  + E          +  +   ++     + +   
Sbjct: 201 NGVLNTKNHKFSPHNPDDWLLHENGITYTEAVEGETLEANAPNYTKWLNHVSGGNADKAR 260

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                + M L      Q FI + GVGGSGKS  M++ ++  G     + E   +   R  
Sbjct: 261 RIKAGLYMVLANRYDWQLFIEVTGVGGSGKSVFMHIAEFLTGKHNTSSGELKSLDDARGR 320

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                     + +G +++++ +  +        +K +TGGD +     Y   +S      
Sbjct: 321 ---------AQFVGKKLILLPDQRKYSGDGEG-LKAITGGDDVGIDPKYEKQFS-MVMKS 369

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWFLKG 662
              I  N+ +      +   RR ++  F++ + ++D      +K+E        +  L  
Sbjct: 370 VVIITGNRPMQFTERHNGIARRRVIFHFNESVPDKDKDKKLTEKIE-AEIPVIIRDLL-- 426

Query: 663 VKAYISKGLDVDIPEVCLKAK---------EEERQGTDTYQAW 696
                   L+   PE   +            E ++ +D    +
Sbjct: 427 --------LEFTQPEKAYQLLLEQRDSGEATEVKRESDPLIDF 461


>gi|228961912|ref|ZP_04123454.1| hypothetical protein bthur0005_53160 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228797771|gb|EEM44842.1| hypothetical protein bthur0005_53160 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 168

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 22/178 (12%)

Query: 620 DDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
           D+  WRR  +IPF+  +    RD   ++KL          W ++G   +  +GL    P+
Sbjct: 2   DEGIWRRVKLIPFNLNLPAHKRDKRLSEKLSL-EMSGILNWAIEGCMKWQKEGLK--EPK 58

Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIG----ENLWEESHSLAKSYSEYREQELNYDRKRI 733
           V  +A    ++  D    ++ + C I     E +  E+  L   Y  +         + +
Sbjct: 59  VVAEATGRYKEDMDILGPFLSEVCYIDEPKNEAIKMEAKELYNVYETWC---FRSGERAL 115

Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KPAFESVDDNSNIIDFK 788
             R+    L+ KGF          K   +K    G+ L   KP  + V +N+    FK
Sbjct: 116 GNRSFYRMLETKGFGKT-------KGTGNKTFFTGITLLERKPVTKGVTENAENNHFK 166


>gi|15675884|ref|NP_270058.1| putative DNA primase [Streptococcus phage 370.4]
 gi|13623119|gb|AAK34779.1| putative DNA primase - phage associated [Streptococcus phage 370.4]
          Length = 562

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 128/345 (37%), Gaps = 27/345 (7%)

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDY 485
            + + + +TGQ  + T ++ +T+   T + +               +   F    E+ + 
Sbjct: 189 GNQLYNYKTGQFEELTPDITVTRKIKTGYNKKAKEPTIKGWKPTAWLLELFDGDAELYNL 248

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
             + +  ++ G    Q+   + G GG+GK T   L+    G   V + + +++ ++R   
Sbjct: 249 AIQIIKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTT 307

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
           +         L+G  IVI  +  ++  I + + I  +  GD MT        YS    + 
Sbjct: 308 SI--------LLGKSIVIGDDIQKDAVIKDTSDIFSLATGDIMTIEDKGKRPYS-IRLNM 358

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
           T     N    +     A  RR+ ++PF K    +  + A + +     E  ++ LK   
Sbjct: 359 TVVQSSNGLPRMNGDKSAIDRRFRILPFTKVFKGK-PNKAIRNDYINRKEVLEYLLKLA- 416

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYRE 723
             I   +    P+  ++  EE  +  +    ++     D   + +  +  +   +  + E
Sbjct: 417 --IETPITDINPKASIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLE 474

Query: 724 QELNYDRKRISTRTVTLNLKQK---GFIGGIKREKIEKEWKSKRI 765
                 ++  S R +   +K     GF  G K   + ++  +   
Sbjct: 475 YYD--IKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQLHTGFY 517


>gi|50915163|ref|YP_061135.1| virulence-associated protein E [Streptococcus pyogenes MGAS10394]
 gi|50904237|gb|AAT87952.1| Virulence-associated protein E [Streptococcus pyogenes MGAS10394]
          Length = 562

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 128/345 (37%), Gaps = 27/345 (7%)

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDY 485
            + + + +TGQ  + T ++ +T+   T + +               +   F    E+ + 
Sbjct: 189 GNQLYNYKTGQFEELTPDITVTRKIKTGYNKKAKEPTIKGWKPTAWLLELFDGDAELYNL 248

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
             + +  ++ G    Q+   + G GG+GK T   L+    G   V + + +++ ++R   
Sbjct: 249 AIQIIKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTT 307

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
           +         L+G  IVI  +  ++  I + + I  +  GD MT        YS    + 
Sbjct: 308 SI--------LLGKSIVIGDDIQKDAVIKDTSDIFSLATGDIMTIEDKGKRPYS-IRLNM 358

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
           T     N    +     A  RR+ ++PF K    +  + A + +     E  ++ LK   
Sbjct: 359 TVVQSSNGLPRMNGDKSAIDRRFRILPFTKVFKGK-PNKAIRNDYINRKEVLEYLLKLA- 416

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYRE 723
             I   +    P+  ++  EE  +  +    ++     D   + +  +  +   +  + E
Sbjct: 417 --IETPITDINPKASIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLE 474

Query: 724 QELNYDRKRISTRTVTLNLKQK---GFIGGIKREKIEKEWKSKRI 765
                 ++  S R +   +K     GF  G K   + ++  +   
Sbjct: 475 YYD--IKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQLHTGFY 517


>gi|191172101|ref|ZP_03033645.1| bacteriophage P4 DNA primase [Escherichia coli F11]
 gi|300991771|ref|ZP_07179634.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
           200-1]
 gi|190907628|gb|EDV67223.1| bacteriophage P4 DNA primase [Escherichia coli F11]
 gi|300305525|gb|EFJ60045.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
           200-1]
          Length = 584

 Score =  131 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    + E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFANGALDLKTGEFSPHSPENWITTHNGIEYTPPVPGENIRDNAPNFHKWLDHAAGK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPGKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 456 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRT--KPLNVNDFGKAMKPAAKVYGHEYIT 563

Query: 756 IEKEW 760
            + + 
Sbjct: 564 RKVKG 568


>gi|324012997|gb|EGB82216.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 60-1]
          Length = 584

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    + E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFANGALDLKTGEFSPHSPENWITTHNGIEYTPPVPGENIRDNAPNFHKWLDHAAGK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPGKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 456 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRT--KPLNVNDFGKAMKPAAKVYGHEYIT 563

Query: 756 IEKEW 760
            + + 
Sbjct: 564 RKVKG 568


>gi|254480931|ref|ZP_05094177.1| Primase C terminal 2 family protein [marine gamma proteobacterium
           HTCC2148]
 gi|214038726|gb|EEB79387.1| Primase C terminal 2 family protein [marine gamma proteobacterium
           HTCC2148]
          Length = 657

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 105/307 (34%), Gaps = 37/307 (12%)

Query: 17  GFKLIPLRLGDKRPQRLGKWEE----QLLSSEKIDKL----PACGFGFVCGVGEQPLYAF 68
           GF ++P+  G KRP    KW      +LLS   + +     P      V G     +   
Sbjct: 32  GFVVVPIIPGTKRPAI--KWRSDQGGRLLSRRSVARYWRKHPKYDVAIVVGPR---IIML 86

Query: 69  DIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG--HL 126
           D D+ + +      +    L    IVR  +   +   F +    I K    +S      +
Sbjct: 87  DADTPEAEARLHEIEAAHDLTPKIIVRTSR--GLHHYFGLADGVIAKADGLDSKSNPTGI 144

Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF--QEITVPL 184
           DI       +       T K +          +ED  ++ +  V+ + +    +  + P 
Sbjct: 145 DIRAGESLAIVPPS---TSKSFEL---CEANSLEDLGVVGQNFVDAIVRNNGRKPASPPA 198

Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244
                + +P+   T  N  +   + + + L        +  + +W  V MAVHH T G  
Sbjct: 199 TSTPPASLPAPITTLTNAEEARIQNLLSHLEP------DLCYQDWSHVGMAVHHATGGGQ 252

Query: 245 KGKEIARRWSKQGSTY-DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
            G ++  +WS  G  Y    +    W  F  E      +   T  +L     +   + LL
Sbjct: 253 IGLDLFDQWSSGGKKYIGRHDIQNAWKYFSTER-----EDPITLGTLIMMANQAKQQLLL 307

Query: 304 ASRFSDA 310
            +  +  
Sbjct: 308 PAPATMT 314


>gi|326692265|ref|ZP_08229270.1| poxvirus D5 protein [Leuconostoc argentinum KCTC 3773]
          Length = 475

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 123/417 (29%), Gaps = 24/417 (5%)

Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
             K++++       +  ++    N K              S  +   D  +  +  ++G 
Sbjct: 68  TEKSARAYIEREALENLKRYNAYNVKRMQGVSKTTLIQTISEHNPFEDQRTDIIAFKNGA 127

Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
            ++ETG      +  Y+         +   +       S  F +     +    +G A +
Sbjct: 128 YEIETGNITPNQQLHYLVNGHDIEINKDGQAPNIEAWGSYLFGNSW--QFIKELLGYAFI 185

Query: 496 GGNK--AQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYVINAEASDIMQNRPPEAGKANPS 552
              K      I +  +GG+GKS   + I +   G + ++  +   I  +       A   
Sbjct: 186 PEYKTFNTIAIIVDEMGGTGKSYFFDSIVFPLLGTKNIVAKDMDTIAGSNGKS---ARFG 242

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           LI L      I  +  +        ++ ++GGD +       +               N+
Sbjct: 243 LIGLFEKLSNIHLDLPDTRIEVPDTLRSLSGGDRIDVEAKNADA-LSLKFYALLLFGANQ 301

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK--LETKYT-----LEAKKWFLKGVKA 665
              +   + A  +R  ++P   P A        K  L          L A  + +     
Sbjct: 302 TPNI-AVNVALSQRIKIVPVTAPRARERPQEQAKRALLWDEKQAIKELGAFAYSVLTAYQ 360

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW---EESHSLAKSYSEYR 722
              +       +    A  E  +  D    ++ D     +NL+            +  + 
Sbjct: 361 QAEQRGKFSTSDEIETATREWLERQDLVTMFLKDVTREDDNLYSGGVSISQTWDLFQLWL 420

Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK--GLKLKPAFES 777
           +    + +  +  +     ++Q G+     R     +     +    GL L P F  
Sbjct: 421 QDNGIHSK--LQRKQFNGRMEQLGYKKIKTRSHQTGKTTEYPVWSWDGLDLDPYFNE 475


>gi|56808601|ref|ZP_00366330.1| COG3378: Predicted ATPase [Streptococcus pyogenes M49 591]
 gi|209558920|ref|YP_002285392.1| Putative DNA primase-phage associated [Streptococcus pyogenes
           NZ131]
 gi|209540121|gb|ACI60697.1| Putative DNA primase-phage associated [Streptococcus pyogenes
           NZ131]
          Length = 562

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 128/345 (37%), Gaps = 27/345 (7%)

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDY 485
            + + + +TG+  + T ++ +T+   T + +               +   F    E+ + 
Sbjct: 189 GNRLYNYKTGRFEELTPDITVTRKIKTSYNKKAKEPTIKGWKPTTWLLELFDGDTELYNL 248

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
             + +  ++ G    Q+   + G GG+GK T   L+    G   V + + +++ ++R   
Sbjct: 249 AIQIIKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTT 307

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
           +         L+G  IVI  +  ++  I + + I  +  GD MT        YS    + 
Sbjct: 308 SI--------LLGKSIVIGDDIQKDAVIKDTSDIFSLATGDIMTIEDKGKRPYS-IRLNM 358

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
           T     N    +     A  RR+ ++PF K    +  + A + +     E  ++ LK   
Sbjct: 359 TVVQSSNGLPRMNGDKSAIDRRFRILPFTKVFKGK-PNKAIRNDYINRKEVLEYLLKLA- 416

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYRE 723
             I   +    P+  ++  EE  +  +    ++     D   + +  +  +   +  + E
Sbjct: 417 --IETPITDINPKTSIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLE 474

Query: 724 QELNYDRKRISTRTVTLNLKQK---GFIGGIKREKIEKEWKSKRI 765
                 ++  S R +   +K     GF  G K   + ++  +   
Sbjct: 475 YYD--IKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQLHTGFY 517


>gi|322410912|gb|EFY01820.1| Putative DNA primase-phage associated protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
 gi|322411248|gb|EFY02156.1| Putative DNA primase-phage associated protein [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 562

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 128/345 (37%), Gaps = 27/345 (7%)

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDY 485
            + + + +TG+  + T ++ +T+   T + +               +   F    E+ + 
Sbjct: 189 GNRLYNYKTGRFEELTPDITVTRKIKTNYNKKAKEPTIKGWKPTTWLLELFDGDTELYNL 248

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
             + +  ++ G    Q+   + G GG+GK T   L+    G   V + + +++ ++R   
Sbjct: 249 AIQIIKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTT 307

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
           +         L+G  IVI  +  ++  I + + +  +  GD MT        YS    + 
Sbjct: 308 SI--------LLGKSIVIGDDIQKDAVIKDTSDMFSLATGDIMTIEDKGKRPYS-IRLNM 358

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
           T     N    +     A  RR+ ++PF K    +  + A + +     E  ++ LK   
Sbjct: 359 TVVQSSNGLPRMNGDKSAIDRRFRILPFTKVFKGK-PNKAIRNDYINRKEVLEYLLKLA- 416

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYRE 723
             I   +    P+  ++  EE  +  +    ++     D   + +  +  +   +  + E
Sbjct: 417 --IETPITDINPKTSIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLE 474

Query: 724 QELNYDRKRISTRTVTLNLKQK---GFIGGIKREKIEKEWKSKRI 765
                 ++  S R +   +K     GF  G K   + ++  +   
Sbjct: 475 YYD--IKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQLHTGFY 517


>gi|168758806|ref|ZP_02783813.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
 gi|168769867|ref|ZP_02794874.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
 gi|195937923|ref|ZP_03083305.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4024]
 gi|189354443|gb|EDU72862.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
 gi|189361144|gb|EDU79563.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
          Length = 584

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 120/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P       +  F   +      
Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAARK 287

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
               M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEASGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +   PE       E+R         Q TD          ++++  
Sbjct: 456 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++    +  +K    + G +   
Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMKPAAKVYGHEYIT 563

Query: 756 IEKEW 760
            + + 
Sbjct: 564 RKVKG 568


>gi|333008342|gb|EGK27816.1| phage/plasmid primase [Shigella flexneri K-272]
 gi|333019830|gb|EGK39102.1| phage/plasmid primase [Shigella flexneri K-227]
          Length = 583

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 78/568 (13%), Positives = 167/568 (29%), Gaps = 74/568 (13%)

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300
             S     A++W +Q      +N    W   +   E+            +  +    +  
Sbjct: 25  AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
                         +         ++    + W +         +  L            
Sbjct: 85  VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144

Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416
               +   L  E  D    ++ S+    W    +     +E + +  +      A     
Sbjct: 145 MADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204

Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
           + ++ +++           S   L   +G LDL+TG+    T E +IT   G  +    P
Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264

Query: 466 SQ-------EFLDLVSGYFESEEVMDYFTRCVG---MALLGGNKAQRFIHIRGVGGSGKS 515
            +        F   +      ++  +   R      M +      Q FI   G GGSGKS
Sbjct: 265 GENIRDNALNFHKWLEHAAG-KDQRNKMMRICAALYMIMANRYDWQMFIEATGDGGSGKS 323

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
           T  ++     G Q  ++AE + +                +++GSR++++++  +      
Sbjct: 324 TFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGT 374

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
             IK++TGGD +     Y   ++            N  +          RR ++  FD  
Sbjct: 375 G-IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNI 432

Query: 636 IA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER------ 687
           ++   +D    +K+         +  L           +    E       E+R      
Sbjct: 433 VSEAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDSEKARALLLEQRDGDEAL 481

Query: 688 ---QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKR 732
              Q TD          ++++   +          +   +SL + Y  +         K 
Sbjct: 482 AIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KP 539

Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEW 760
           ++       +K    + G +    + + 
Sbjct: 540 LNVNDFGKAMKPAAKVYGHEYITRKVKG 567


>gi|281600549|gb|ADA73533.1| Bacteriophage P4 DNA primase [Shigella flexneri 2002017]
          Length = 499

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------EFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P +        F   +      
Sbjct: 143 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGK 202

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +  M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 203 DQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 262

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 263 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 312

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 313 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 370

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +    E       E+R         Q TD          ++++  
Sbjct: 371 RRLLA----------NFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 420

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 421 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 478

Query: 756 IEKEW 760
            + + 
Sbjct: 479 RKVKG 483


>gi|182419856|ref|ZP_02951096.1| hypothetical protein CBY_4020 [Clostridium butyricum 5521]
 gi|237666893|ref|ZP_04526878.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182376404|gb|EDT73986.1| hypothetical protein CBY_4020 [Clostridium butyricum 5521]
 gi|237658092|gb|EEP55647.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 831

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 95/518 (18%), Positives = 167/518 (32%), Gaps = 21/518 (4%)

Query: 281 AKKRSTFTSLFYHHGKLIPKGLLA--SRFSDAYNKAMFSIYKKGHFLYTADT-KAWYKKD 337
             K +          + + K L    SR   A    +    K   F +  D  K     D
Sbjct: 319 PTKYNDLNEWLIADKEELEKELNTVVSRLKYANKINISGDVKDAFFSWIGDNLKYILNCD 378

Query: 338 KNNVYI-WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396
               +I W+           + L+  K       +   +  +   SP        + ++ 
Sbjct: 379 DERRFIYWNEKAWIRKTEEESRLLYGKFIKKCEEQFKRNRARGKYSPEEASKVLNKVKSW 438

Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVKPTKELYITKS 455
              SKAK     +      +I           L   +G I+DL+ G      KE  +  +
Sbjct: 439 RNTSKAKECLNLIGLDEDLTINIAEYKKKYHILISANGKIIDLKDGVIRDSVKEDMVLDT 498

Query: 456 TGTPFVEGEPS-----QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
                V  E +     ++ L   S     EE +++    + M L G N  Q  +   G  
Sbjct: 499 VPYNLVGKEEALDFMEKKILKTYSYVLG-EERLNFLLDFLAMKLSGKN-YQLALINIGPS 556

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
            SGKS + NL    + N             ++     + +  ++ L    I + SE  +N
Sbjct: 557 KSGKSMMKNLTTNLYPNLVAQIPYTYLTTSHKGNMGAERDDIIVNLDKKLIALSSEVEKN 616

Query: 571 DE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFT-PFIVPNKHLFVRNPDDAWWRRYI 628
           +  I   + K +       AR   G   +    +     I  N+       DDA   R +
Sbjct: 617 NSPIAIGRFKNLLSNSITDARAAGGKMQNGIDLTHLDMIIDTNEMPSFSGYDDAIENRLV 676

Query: 629 VIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
            I +   I   +R  +F  ++      +   +F+   +A   K   + +PEV  K   E 
Sbjct: 677 FINWQNSIPVEDRIDNFNGEVIVPNMDKIWSYFI--YRAIELKDKKIVVPEVIKKDSAER 734

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           +   D +     +     E +  E   L    +E    EL  + K+      ++  + KG
Sbjct: 735 KGELDKFTM---NVVTKLEYIEGEFIELVTLINELEIFELCPELKQSDKLHKSITDRIKG 791

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
             G  K  +  K       IKG+ LK        ++  
Sbjct: 792 VPGFEKVIQYRKGKYKVNGIKGIALKQKNSISQGDTIY 829


>gi|332761077|gb|EGJ91364.1| phage/plasmid primase [Shigella flexneri K-671]
          Length = 532

 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------EFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P +        F   +      
Sbjct: 176 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGK 235

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +  M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 236 DQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 295

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 296 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 345

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 346 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 403

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +    E       E+R         Q TD          ++++  
Sbjct: 404 RRLLA----------NFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 453

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 454 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 511

Query: 756 IEKEW 760
            + + 
Sbjct: 512 RKVKG 516


>gi|110805144|ref|YP_688664.1| bacteriophage P4 DNA primase [Shigella flexneri 5 str. 8401]
 gi|110614692|gb|ABF03359.1| Bacteriophage P4 DNA primase [Shigella flexneri 5 str. 8401]
          Length = 582

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 78/566 (13%), Positives = 167/566 (29%), Gaps = 71/566 (12%)

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300
             S     A++W +Q      +N    W   +   E+            +  +    +  
Sbjct: 25  AGSDAWSHAKQWQEQDGPASGDNVPPVWFGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
                         +         ++    + W +         +  L            
Sbjct: 85  VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144

Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416
               +   L  E  D    ++ S+    W    +     +E + +  +      A     
Sbjct: 145 MADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204

Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
           + ++ +++           S   L   +G LDL+TG+    T E +IT   G  +    P
Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264

Query: 466 SQ-------EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
            +        F   +       +  M      + M ++     Q FI   G GGSGKST 
Sbjct: 265 GENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMVNRYDWQMFIEATGDGGSGKSTF 324

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            ++     G Q  ++AE + +                +++GSR++++++  +        
Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGTG- 374

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           IK++TGGD +     Y   ++            N  +          RR ++  FD  ++
Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433

Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687
              +D    +K+         +  L           +    E       E+R        
Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDSEKARALLLEQRDGDEALAI 482

Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            Q TD          ++++   +          +   +SL + Y  +         K ++
Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540

Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760
                  +K    + G +    + + 
Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566


>gi|306834495|ref|ZP_07467608.1| virulence-associated protein E [Streptococcus bovis ATCC 700338]
 gi|304423297|gb|EFM26450.1| virulence-associated protein E [Streptococcus bovis ATCC 700338]
          Length = 545

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/521 (12%), Positives = 156/521 (29%), Gaps = 60/521 (11%)

Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD---KNNVYIWSLTLDKIT 352
           + + + +  + F+D+  K+          L T         D   K     +     +  
Sbjct: 6   EQLDEIVPDNNFNDSSEKSQDKDEVMDTHLTTFKNIRQVLFDEVEKIKRDAYDRAYQEYM 65

Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
               N          + + +    N             +  +   E    K+     +  
Sbjct: 66  LEHENAEDKTARAYAEKARKKATPNTPLAVAIILKKYIHFVRIKPEAQNQKAPLYFYKPD 125

Query: 413 SIFSITSDLLDSSSRFLGEQDGI-------------------------------LDLETG 441
           +   +  +        L   +                                     TG
Sbjct: 126 NGVYVEDNEFLQDLIMLIFPNATEKQAFDTLYKIAHQSPIKKIQGEYTAIGTQLYHNITG 185

Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDYFTRCVGMALL 495
           +      ++ +T+   T +               D +   F   +E+     + +  ++ 
Sbjct: 186 KFEPFNPKIIVTRKIKTAYNPYAKEPTINGWKVTDWLKELFDGDKELYQLAIQIIKASIT 245

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
           G    ++   + G GG+GK T   L+    G + V + + + + ++R   +         
Sbjct: 246 GQ-SLEKIFWLYGEGGTGKGTFQQLLINLVGLENVASLKITALNKSRFTTSI-------- 296

Query: 556 LMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
           L+G  +VI  +  ++  I + + +  +  GD MT        YS    + T     N   
Sbjct: 297 LLGKSLVIGDDVQKDAIIKDTSDMFSLASGDIMTIEDKGKKPYS-LRLNMTVVQSSNGLP 355

Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
            +     A  RR+ ++ F     ++  + A K +     +  ++ +K     I   L+  
Sbjct: 356 RMNGDVSAIDRRFRILVFSSKFKDK-PNPAIKKDYINRKKVLEYLVKLA---IETPLEDI 411

Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR-EQELNYDRKRI 733
            P+       E ++  +    ++    +        S  +   +  Y  +Q  +Y R+  
Sbjct: 412 NPKQSQTLLGEHQKDINPVLDFV----EKTFREDLASEFIPNDFIWYCWKQYQDYFRQPS 467

Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
           S  +  L+ + K ++    +  +      +++  G   K  
Sbjct: 468 SKSSNGLHREIKQYLPTFFKAGVRTIPAGRQLHLGFYPKED 508


>gi|332767356|gb|EGJ97550.1| phage/plasmid primase [Shigella flexneri 2930-71]
          Length = 582

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 78/566 (13%), Positives = 166/566 (29%), Gaps = 71/566 (12%)

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300
             S     A++W +Q      +N    W   +   E+            +  +    +  
Sbjct: 25  AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
                         +         ++    + W +         +  L            
Sbjct: 85  VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144

Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416
               +   L  E  D    ++ S+    W    +     +E + +  +      A     
Sbjct: 145 MADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204

Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
           + ++ +++           S   L   +G LDL+TG+    T E +IT   G  +    P
Sbjct: 205 VINNAVEALKVIAAPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264

Query: 466 SQ-------EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
            +        F   +       +  M      + M +      Q FI   G GGSGKST 
Sbjct: 265 GENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            ++     G Q  ++AE + +                +++GSR++++++  +        
Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGTG- 374

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           IK++TGGD +     Y   ++            N  +          RR ++  FD  ++
Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433

Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687
              +D    +K+         +  L           +    E       E+R        
Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDSEKARALLLEQRDGDEALAI 482

Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            Q TD          ++++   +          +   +SL + Y  +         K ++
Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540

Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760
                  +K    + G +    + + 
Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566


>gi|332759427|gb|EGJ89735.1| phage/plasmid primase [Shigella flexneri 2747-71]
          Length = 582

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 78/566 (13%), Positives = 166/566 (29%), Gaps = 71/566 (12%)

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300
             S     A++W +Q      +N    W   +   E+            +  +    +  
Sbjct: 25  AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
                         +         ++    + W +         +  L            
Sbjct: 85  VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144

Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416
               +   L  E  D    ++ S+    W    +     +E + +  +      A     
Sbjct: 145 MADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204

Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
           + ++ +++           S   L   +G LDL+TG+    T E +IT   G  +    P
Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264

Query: 466 SQ-------EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
            +        F   +       +  M      + M +      Q FI   G GGSGKST 
Sbjct: 265 GENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            ++     G Q  ++AE + +                +++GSR++++++  +        
Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGTG- 374

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           IK++TGGD +     Y   ++            N  +          RR ++  FD  ++
Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433

Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687
              +D    +K+         +  L           +    E       E+R        
Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDSEKARALLLEQRDGDEALAI 482

Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            Q TD          ++++   +          +   +SL + Y  +         K ++
Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540

Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760
                  +K    + G +    + + 
Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566


>gi|88807526|ref|ZP_01123038.1| ATPase-like protein [Synechococcus sp. WH 7805]
 gi|88788740|gb|EAR19895.1| ATPase-like protein [Synechococcus sp. WH 7805]
          Length = 854

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/438 (15%), Positives = 137/438 (31%), Gaps = 42/438 (9%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
           +L   + T  + ++      DV       +D  +  + P+   +    R +  +N K  S
Sbjct: 345 NLQFWRWTEELHHWERRSGHDVKHWLS--KDLERYYEPPQSERDIPRFRFSTLDNVKRIS 402

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
                       +    LD S   +   +G+LD+ TG+ +    E   T      +    
Sbjct: 403 GYLQ------IRLDDPRLDGSPHLIPFTNGVLDVTTGELLDHAPEHGCTYCIQGNYCAPG 456

Query: 465 P---SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN-L 520
                  F  L+   +  +         + M +     + + + + G  GSGK  L+N +
Sbjct: 457 TGQLGPAFHHLLQTSY-DKAHHQMLRAGMRMIVDPTMPSGKALVLEGASGSGKGALVNGV 515

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           I+  F    +      D +  +             ++G R++   +     +   +   +
Sbjct: 516 IRRLFPTHAISALSRLDQLDGKEAIYQS-------VLGKRLITFGDLI-GKQSKYSAFYE 567

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD--AWWRRYIVIPFDKPIAN 638
           +     +TAR  + +       +    +   K     + D    W RR  V+P    I  
Sbjct: 568 LVDQSMITARRLFESEEVTVDFAGRFVLAMTKMPMFVDDDGNTGWMRRAFVVP---TIPG 624

Query: 639 R------DASFAQKLETKYTLEAKKWFLKGVKAY---ISKGLDVDIPEVCLKAKEEERQG 689
                  D      L T        W L   +     I +G   D  E   + + +    
Sbjct: 625 ERDRSLYDGDLEADLAT-EVGAIASWALAMDRKEAIDILQGRSDD--EEVQRVQAKAAAS 681

Query: 690 TDTYQAWIDDCCDIGENLWEESH-SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
           TD+   +ID C    +   E     L  +Y  +        +K ++       L++    
Sbjct: 682 TDSLSEFIDHCLVPTDGTVEADQVDLIDAYRLFCHATG---KKALADARFIGQLRKALPH 738

Query: 749 GGIKREKIEKEWKSKRII 766
               R ++ +     R +
Sbjct: 739 LHQPRRQLSRSVARDRGV 756


>gi|229583958|ref|YP_002842459.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.16.27]
 gi|228019007|gb|ACP54414.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.16.27]
          Length = 865

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 97/691 (14%), Positives = 211/691 (30%), Gaps = 77/691 (11%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKLPACG---FGFVCGVGEQ 63
           + A      G  +IPL+  +K P  +  K++++L + ++I K           +CG    
Sbjct: 7   DYALFYHTYGLSVIPLKPKEKVPLIKWEKYQKELATIDEIKKWFENNENNIAIICGKVSG 66

Query: 64  PLYAFDIDSKDEKTANTFKDTFEI-------LHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
            L   D D  D +    F    E        ++ T +V+ G+     I  R++ +   K 
Sbjct: 67  NLVVIDFD--DAEIYEKFLKEVEKDSELAEIINNTWLVKTGK--GYHIYLRIDIDKPVKI 122

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
              +     +D+ G G Y VA      + K Y +     +    +  +++EE  + +   
Sbjct: 123 GKLQK----IDVKGEGGYVVAPPSIHPSGKTYEFVR-FSKTTGHEIRVITEEQYKKILTI 177

Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVM 234
            + +T   + D             ++++ +   I   +      +  G   + +      
Sbjct: 178 LENVTESTITDTAIEK----GEIRHDKKLSENTILRIIDILSPVYKEGVRHDIVMYLSGW 233

Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE---EIGDTAKKRSTFTSLF 291
                 +   + +   +        + +E  N +  T +     +     K R   +S  
Sbjct: 234 ----LYKAGIELESAKKLILLLCDKFKDEECNDRIYTLERTYGLKGNQPPKDRLKTSSGL 289

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY---TADTKAWYKKDKNNVYIWSLTL 348
           Y     +     A        + + S   +   L      + + +         I + T 
Sbjct: 290 YEIFSNVLTEADALGRIRQLEEILESAEPQPKVLIELLNYEKEIFAIAHLERCEILTATR 349

Query: 349 --DKITASIMNFLVSMKEDVFDLSEEPEDNNKN----SKSPRFWFNTDYRRQNVEENSKA 402
             ++     +  LV     +                  K    W+     R+   EN   
Sbjct: 350 KVEENGQDKIERLVYKDRVIIGCPRSVTAIESPFSQVIKYDFAWYIPSQNREIKLENVTV 409

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLG------EQDGILDLETGQKVKPTKELYITKST 456
                 L+A  +    +   D  +  L         +     +         ++   K  
Sbjct: 410 DEILAYLKANGLVLRKNLAEDVLNAILNAMLRKKIANVKTGFDAPGFYWHDNKILANKI- 468

Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDY----------FTRCVGMALLGGNKAQR---- 502
                  +  +E L+L++    +                       A+    K ++    
Sbjct: 469 EVRKHTSDEVREALELLNELINTWFARAKEQFVTAVKLGLLLPFSFAVKQKFKNEKGFLP 528

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
           ++++ G   +GK+T   +I Y      ++N +    +     EA   +          I 
Sbjct: 529 WLYLYGKKNTGKTTTAEIILYI---YNIMNRQHELGVGEVNTEAKLGSVLASDTFPHVIN 585

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS--ESPASFTPFIVPNKHLFVRNPD 620
             +   +   +N    + + G   + AR  + N     E PA  +  I  N+    R  D
Sbjct: 586 EGASLFDKPGLNEVIKQAIEG---VIARQRFENKTIIKEYPAFASLIITTNEM---RITD 639

Query: 621 DAWW-RRYIVIPFDKPIANRDASFAQKLETK 650
           DA   +R ++I +  PI  +      K   +
Sbjct: 640 DALTQKRLVLIRY--PIEAQADQVKIKEFRE 668


>gi|30062663|ref|NP_836834.1| bacteriophage P4 DNA primase [Shigella flexneri 2a str. 2457T]
 gi|56479831|ref|NP_707046.2| bacteriophage P4 DNA primase [Shigella flexneri 2a str. 301]
 gi|30040911|gb|AAP16641.1| Bacteriophage P4 DNA primase [Shigella flexneri 2a str. 2457T]
 gi|56383382|gb|AAN42753.2| Bacteriophage P4 DNA primase [Shigella flexneri 2a str. 301]
 gi|313650411|gb|EFS14818.1| putative DNA primase [Shigella flexneri 2a str. 2457T]
 gi|333019317|gb|EGK38600.1| phage/plasmid primase [Shigella flexneri K-304]
          Length = 582

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------EFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P +        F   +      
Sbjct: 226 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGK 285

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +  M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 286 DQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 345

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD +     Y   ++
Sbjct: 346 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 395

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 396 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 453

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +    E       E+R         Q TD          ++++  
Sbjct: 454 RRLLA----------NFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 503

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 504 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 561

Query: 756 IEKEW 760
            + + 
Sbjct: 562 RKVKG 566


>gi|217979240|ref|YP_002363387.1| hypothetical protein Msil_3116 [Methylocella silvestris BL2]
 gi|217504616|gb|ACK52025.1| conserved hypothetical protein [Methylocella silvestris BL2]
          Length = 841

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 94/298 (31%), Gaps = 39/298 (13%)

Query: 11  KQAIHNGF----KLIP----------LRLG--DKRPQRL---------GKWEEQLLSSEK 45
           K+    G+     LIP          +R     K P +            W+    +   
Sbjct: 38  KELWDRGYRALRPLIPHDATMSESSNIRPELIGKIPGKRLANGTWVGFHDWQTHSTTDAD 97

Query: 46  IDKLP--ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL 103
           + +      G G + G+    + A DID+ D   +    +    + G    R+G+ PK L
Sbjct: 98  LVEWASWGAGVGLMTGLVSS-VLAVDIDTLDHGLSARAAELMREMLGPARPRVGRAPKAL 156

Query: 104 IPFRMNKE---GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
             +R  +       K    E  +  +++    +  V    HPKT K Y+W      FK  
Sbjct: 157 FLYRCAQPVPFLKVKFDGPEGKRELVELSTDRRQIVMRGTHPKTGKPYSWPEGLPPFK-- 214

Query: 161 DTPLLSEEDVEYLFKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218
           +   ++ E VE  F     +         K S                     A  S   
Sbjct: 215 ELTEVTPEQVEAFFLELSHVMPNAEFRGRKLSAGSGSGGDQTKFTGSAEAVARAVRSLPN 274

Query: 219 EEFYNGSHDEWIPVVMAVHHET-RGSSKGKEIARRWSKQ---GSTYDEENFNYKWDTF 272
            E    + D W+ ++ A+           + +A+ WS++       D +    +W   
Sbjct: 275 TEALYPTRDSWLDMLYAIKAALPDDPGAAEALAQEWSEKYDGPDGNDPDYVAQEWRKM 332


>gi|284162709|ref|YP_003401332.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM
           5631]
 gi|284012706|gb|ADB58659.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM
           5631]
          Length = 1107

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 116/830 (13%), Positives = 223/830 (26%), Gaps = 139/830 (16%)

Query: 8   EQAKQAIHNGFKLIPL---------RLGDKRPQ-RLGKWEEQLLSSEKIDKLPAC----- 52
           E AK  +  GF +IP+           G+K       +++++  + E+++K         
Sbjct: 6   EWAKHYLEQGFSVIPVIIVPPSENNPKGNKISAVEWKEFQQRRPTLEELEKWFKHPDFPA 65

Query: 53  -------GFGFVCGVGEQPLYAFDIDSKD------EKTANTFKDTFEILHGTPIVRIGQK 99
                  G   V G     L   D DS++       + A+   D +  +  T IV  G+ 
Sbjct: 66  LRKGNKLGLAIVTGEISGNLTVVDFDSREVMSEVLAELADKHPDLYGKILDTWIVETGK- 124

Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
                  ++      K       +  +DI   G Y VA      + K Y +   P     
Sbjct: 125 -GFHYYLKVKNPDPNKFTNRIGIRPGVDIRANGGYVVAPPSPHPSGKVYRFVHKPE---- 179

Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
            +   L+ E+ + L  F +     + + +      K        +    EI   L    +
Sbjct: 180 -EIAELTWEEYQTLLSFLEGKKRTIPRVEV-----KDGEGRELEESKIVEIVNILRPIYK 233

Query: 220 EFYNG----SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN-YKWDTFDF 274
             Y      S   W+      ++  R   +               +E N   Y  D    
Sbjct: 234 VGYRDLVVFSLTGWLKKAGVSYNSARKIVELL---------AEKDEELNLRLYVLDRTYG 284

Query: 275 EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM--FSIYKKGHFLYTADTKA 332
                  ++     +      + +     A        + +   S +K   F      K 
Sbjct: 285 LRGNPPTEEELKGKAGLQEIAETLLGEERALDLIRNLEEILGKSSPFKDSIFSLIDFRKK 344

Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
            Y        I +   +  +  I+ +   + E         ED           F+    
Sbjct: 345 AYYVANPKRGIIARAFEDKSGGIV-YEKIVAEICPVKVVVYEDPLGGLTKFEIEFHGFRN 403

Query: 393 RQN-VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
                 E     S  QS        +  D L S       + G  ++    +        
Sbjct: 404 LTIGPAELDVVISRLQSEGVVKHSRLLRDALSSIISAF-IRKGKAEIRRELEKPGFY-YI 461

Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF-------- 503
             +     +   E S+E L         +E+   +    G       K            
Sbjct: 462 NGQIKAVKWQPEEFSKEDLAKALKLL--DELRTKWYSKAGKRFTTMIKWGLIAPFAYAIK 519

Query: 504 ------------IHIRGVGGSGKSTLMNLIKYAF------GNQYVINAEASDIMQNRPPE 545
                       +   G   +GK+T+   I  +       G     + +A    ++    
Sbjct: 520 QIRGTIAVHFPDLVAYGARNTGKTTIGAQIILSIWNPPEEGRIVRGSGDADTKAKHGRLR 579

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT-YSESPASF 604
           +    P ++  +           E       +            R  + +  Y E P+  
Sbjct: 580 SLTTFPVVVNEVEGIFNNKELLEEYKSAVENRF----------VRGKHSHGVYIEFPSLA 629

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
             F+  N  L + +   A  +R+  I F   +++       +  T+  L        G  
Sbjct: 630 PFFMTMNGQLPL-DGTGAVRKRFFGIHF--SLSDEIPQHEIEKFTEEVLPRL-----GDL 681

Query: 665 AYISKGLDVDIPEVCLKAKEEER-------------QGTDTYQAW--------------- 696
            ++   +   I E   + KE  +                D    W               
Sbjct: 682 RFLGSFIFKKISENPERLKEAWQVLATELLREAFEFAELD-VPEWVNEFYEGETEEEVNE 740

Query: 697 -IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            I++  +I   L E  ++L   Y    E          ++ T+   LK  
Sbjct: 741 TINE--EIRARLLESINNLYARYISRIEIVGENQNDLYTSTTLERRLKAL 788


>gi|332758300|gb|EGJ88623.1| phage/plasmid primase [Shigella flexneri 4343-70]
          Length = 498

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 118/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------EFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P +        F   +      
Sbjct: 142 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGK 201

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +  M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 202 DQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 261

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD       Y   ++
Sbjct: 262 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPAEINPKYEKRFT 311

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 312 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 369

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +    E       E+R         Q TD          ++++  
Sbjct: 370 RRLLA----------NFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 419

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 420 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 477

Query: 756 IEKEW 760
            + + 
Sbjct: 478 RKVKG 482


>gi|333005686|gb|EGK25204.1| phage/plasmid primase, P4 family [Shigella flexneri K-218]
          Length = 535

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 118/365 (32%), Gaps = 55/365 (15%)

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------EFLDLVSGYFE- 478
             L   +G LDL+TG+    T E +IT   G  +    P +        F   +      
Sbjct: 179 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGK 238

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            +  M      + M +      Q FI   G GGSGKST  ++     G Q  ++AE + +
Sbjct: 239 DQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 298

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                           +++GSR++++++  +        IK++TGGD       Y   ++
Sbjct: 299 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPAEINPKYEKRFT 348

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
                       N  +          RR ++  FD  ++   +D    +K+         
Sbjct: 349 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 406

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701
           +  L           +    E       E+R         Q TD          ++++  
Sbjct: 407 RRLLA----------NFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 456

Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
            +          +   +SL + Y  +         K ++       +K    + G +   
Sbjct: 457 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 514

Query: 756 IEKEW 760
            + + 
Sbjct: 515 RKVKG 519


>gi|333004948|gb|EGK24468.1| phage/plasmid primase, P4 family [Shigella flexneri VA-6]
          Length = 582

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 78/566 (13%), Positives = 166/566 (29%), Gaps = 71/566 (12%)

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300
             S     A++W +Q      +N    W   +   E+            +  +    +  
Sbjct: 25  AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
                         +         ++    + W +         +  L            
Sbjct: 85  VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144

Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416
               +   L  E  D    ++ S+    W    +     +E + +  +      A     
Sbjct: 145 MADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204

Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
           + ++ +++           S   L   +G LDL+TG+    T E +IT   G  +    P
Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264

Query: 466 SQ-------EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
            +        F   +       +  M      + M +      Q FI   G GGSGKST 
Sbjct: 265 GENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            ++     G Q  ++AE + +                +++GSR++++++  +        
Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGRP---------QVVGSRLIVLADQPKYTGEGTG- 374

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           IK++TGGD +     Y   ++            N  +          RR ++  FD  ++
Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433

Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687
              +D    +K+         +  L           +    E       E+R        
Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDSEKARALLLEQRDGDEALAI 482

Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            Q TD          ++++   +          +   +SL + Y  +         K ++
Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540

Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760
                  +K    + G +    + + 
Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566


>gi|74311430|ref|YP_309849.1| bacteriophage P4 DNA primase [Shigella sonnei Ss046]
 gi|73854907|gb|AAZ87614.1| bacteriophage P4 DNA primase [Shigella sonnei Ss046]
          Length = 495

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 57/396 (14%), Positives = 122/396 (30%), Gaps = 64/396 (16%)

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322
             W  +   E  + A+K+           ++      +   +        + + + Y   
Sbjct: 112 ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             +           D + V+ ++  + +                       +D       
Sbjct: 172 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 201

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
            + + + +         S   +   SL             +++   +G  +G+ D  TG 
Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 252

Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494
             +  K  ++  ++  PF            +  F   +     E++   D     + M L
Sbjct: 253 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAVLFMVL 312

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
                 Q FI + G GGSGKS +  +     G    ++A    +   R            
Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            ++G  ++I+ +        A  IK +TGGD +     +   YS    +    +  N  +
Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 421

Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLE 648
              +      RR ++  F + +    RD   A+K+E
Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE 457


>gi|10956537|ref|NP_043130.1| DNA primase [Lactobacillus delbrueckii]
 gi|971480|emb|CAA90741.1| DNA primase [Lactobacillus delbrueckii]
          Length = 598

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/404 (12%), Positives = 120/404 (29%), Gaps = 44/404 (10%)

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD--SSSRFLGEQDGILDL 438
           K+  +  +     + +       +     +      + SD L   ++ RF+  ++G+ D+
Sbjct: 165 KTKLYDKSRKSIEKLMLCVENTLTERARNDVYEWIRVESDTLAYVTNPRFIPFRNGVYDM 224

Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQ-----------EFLDLVSGYFE--SEEVMDY 485
           +  +    + +          +      +           ++++ +S       E     
Sbjct: 225 QQHKLTPFSPKHPFLYKLPFDYNPKATQEPEFGSKHWKLSKWINALSMSDGYFDENKNKL 284

Query: 486 FTRCVGMAL---LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
             + +  AL           ++   G G SGK T   LI    G   V + + ++     
Sbjct: 285 IWQILACALHLHSPAGDLAFWLIDNGHGRSGKGTFQALITNLAGVNNVGSLKIAEF---- 340

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                        L+   +VI  +       + +  +     D +         Y +   
Sbjct: 341 -----GHRFRTAALL-KPVVIGDDNPPTYISDNSNFRSAVTHDQVFVETKGKQGY-DIYP 393

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW-FLK 661
                   N     ++   A  RR  VI F+      +     K +     +  +W  LK
Sbjct: 394 RSLIIQSMNNFPKFKDTTFANLRRQRVIKFNHEFKEGEFDPNIKGKYMQDPKLLEWLALK 453

Query: 662 GVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL-AKS 717
            +    +  LD+D         +  E  ++  D    +  +           S  L    
Sbjct: 454 IITEEEAGNLDIDNIVNTSESDELLEGMQRDNDPVFNFASELLTGDIKSTVFSTDLMYNI 513

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
           +  + E           +  V++N++ + F   +K+   +  WK
Sbjct: 514 FLAWNED----------SEHVSINMRPRRFKNELKQSVEKLGWK 547


>gi|331028101|ref|YP_004421815.1| integrase [Roseobacter phage RDJL Phi 1]
 gi|301341564|gb|ADK73448.1| integrase [Roseobacter phage RDJL Phi 1]
          Length = 802

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 90/656 (13%), Positives = 182/656 (27%), Gaps = 98/656 (14%)

Query: 9   QAKQAIHNGFKLIPL------------RLGDKRPQRLGKWEEQLLSSEKIDKL--PACGF 54
           Q K  +  G +LIPL            +    +      W ++   S+            
Sbjct: 9   QLKPYLAAGMQLIPLHHHTDEDEYKGKKRNRGKSPVDKNWMKRTYKSDLQVDYMEEGYNV 68

Query: 55  GFVCGVGEQPLYAFDIDSK----------DEKTANTFKDTFEILHGTPIVRIGQKPKILI 104
           G   G G+      DID +          D       KD    +   P V  G     L 
Sbjct: 69  GVRLGAGD---LVLDIDPRGFPEGETLATDNPFKRLCKDVGLNVDEFPRVETGSGG--LH 123

Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTP 163
            +    E +  + +       ++    G+  V+    HP TK  Y+W           TP
Sbjct: 124 IYMSKPEDVSTRDSLNDQYPGVEFKSFGRQVVSAGSIHPDTKLPYSWDFLYPELDELGTP 183

Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
              +  ++ +                      T +        ++E  A +    +    
Sbjct: 184 SAPKLLIDLI-------------------RRPTGSAATGGGEHDQEELAEMLDQLDPEDF 224

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEE--NFNYKWDTFDFEEIGDTA 281
             HD W+ ++ A HH T G   G++    W  +   Y +       +WD+   +  G   
Sbjct: 225 SDHDSWLTLMQACHHATAGD--GRQEFIEWCTRDPEYSDHGTIIGLRWDSLHADADGARV 282

Query: 282 KKRSTFTSLFYH-HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
             R+    +     G+LIP+   A  F D     +                         
Sbjct: 283 TYRTLHKFMRDKGAGELIPRTPAADDFDDLDPDDVPDEAFDEET---------------P 327

Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400
            +     L+K+       +   K  V     +P+  +                +   ++ 
Sbjct: 328 EHEKKGPLEKMNDRYCAVMDGGKFRVMWEVLDPDSGDAKEGIAPR-KCWVSATKFDFQSF 386

Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
            A    Q  +     +          ++    +G++        +   + ++   TG   
Sbjct: 387 LANRRVQQGDRAVPIAEAWQEWGGRRQY----NGVIFDP-----ERDHKGFLNLWTGWAV 437

Query: 461 VEGEPSQEF---LDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGK 514
              +    +    +L+S       E V +Y        +   G+ A+  I  +G  G GK
Sbjct: 438 TPAKKDDGWSYLNELLSDVLCDGDEAVYEYVMNWAAYMIQHPGSPAEVAICFQGGKGVGK 497

Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEI 573
            T    +    G   +    +  +                 L     +   E     D+ 
Sbjct: 498 GTWFRTLAQLAGRHGMQITSSEHLTGRFND----------HLRDCIFLFADEAIKAYDKD 547

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
             +++K +     +       +            +  N+  F+    +   RR+++
Sbjct: 548 GESRLKGLITEPTLVYEGKGKDAKRG-KNRLHVGMASNEDWFIPMGLEG-ERRFLL 601


>gi|289168832|ref|YP_003447101.1| phage-related DNA primase [Streptococcus mitis B6]
 gi|307711139|ref|ZP_07647561.1| poxvirus D5 protein-like family protein [Streptococcus mitis SK321]
 gi|288908399|emb|CBJ23241.1| phage-related DNA primase [Streptococcus mitis B6]
 gi|307617101|gb|EFN96279.1| poxvirus D5 protein-like family protein [Streptococcus mitis SK321]
          Length = 498

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 121/340 (35%), Gaps = 25/340 (7%)

Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDYFTRC 489
            + +TG   + T E+  T+   T +  G              +   F   +E+ +   + 
Sbjct: 128 YNAKTGIFEETTPEITATRKIKTGYSPGAEEPIINGWKPTAWLLELFDGDKELYNLAIQI 187

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +  ++ G    Q+   + G GG+GK T   L+    G + V + + + + +++   +   
Sbjct: 188 IKASVTGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMENVASLKITGLTKSQFSTSI-- 244

Query: 550 NPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
                 L+G  +VI  +  ++  I + + +  +  GD MT        YS    + T   
Sbjct: 245 ------LLGKSLVIGDDVQKDAVIRDTSDMFSLATGDIMTIEDKGKRPYS-IRLNMTVVQ 297

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
             N    +     A  RR+ ++PF K     + + A K +     E  ++ +K     I 
Sbjct: 298 SSNGLPRMNGDKSAIDRRFRILPFTKIFKG-NPNKAIKDDYINRKEVLEYLVKLA---IE 353

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQEL- 726
             +    P   ++  EE  +  +    ++     D   + +  +  +   +  + E    
Sbjct: 354 TPIADINPTKSIEILEEHHKDMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLEYYGI 413

Query: 727 -NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
                +    R +  NL + GF  G K     ++      
Sbjct: 414 KENRSEMGLHREIKSNLPE-GFAVGQKVIPAGQQIHKGFY 452


>gi|291618473|ref|YP_003521215.1| Alpha [Pantoea ananatis LMG 20103]
 gi|291153503|gb|ADD78087.1| Alpha [Pantoea ananatis LMG 20103]
          Length = 774

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 116/373 (31%), Gaps = 64/373 (17%)

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-------GEPSQEFLDLVSGYF 477
             + +G ++G LD  +G      +E ++   +   +            +  F   +    
Sbjct: 407 QRQLIGFRNGALDTRSGTFSPHRRENWLRTLSDVDYTHPVHGETLERHAPHFWQWLDRTA 466

Query: 478 E-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
             S E  D     + M L      Q F+ + G GGSGKS +  +     G    ++A   
Sbjct: 467 GRSAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATMLAGTDNAVSAIIE 526

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
            +  +R             ++G  ++ + +  +     A  IK +TGG       +    
Sbjct: 527 TLEYSR---------ERASVIGYSLIRLPDQEKWSGDGAG-IKAITGGMRCPLTPSTATP 576

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654
                +      V N  +   +      RR +++ F + I    RD    QK++      
Sbjct: 577 TRP-TSRRVILAVNNNPMRFTDRSGGVSRRRVILHFAEIIPANERDPQLKQKIQ-AELAV 634

Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCC---- 701
             +  ++              P+      +++         ++ TD    +    C    
Sbjct: 635 IVRQLMQ----------RFSSPQDARALLQQQQNSGEAMRIKRDTDPMVDF----CGYLF 680

Query: 702 -DIGENL----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
                N            +    L  +Y  Y E      R  +S +T +  L+    +  
Sbjct: 681 ATAEPNGLHMGNASIQPLQPRRYLYHAYLAYMEANGY--RNPLSMKTFSQALES--ILRE 736

Query: 751 IKREKIEKEWKSK 763
             R  +++  K+ 
Sbjct: 737 YGRSYLKRRTKTG 749


>gi|289569622|ref|ZP_06449849.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
 gi|289543376|gb|EFD47024.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
          Length = 240

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 69/239 (28%), Gaps = 22/239 (9%)

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK-----------KDKNNVYIWSLTL 348
                + + D     +     K   ++    +  Y+                 + W    
Sbjct: 8   TDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRR 67

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
                        + E    LS+   D    +   +            E  S        
Sbjct: 68  WAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESASGVAGVLDL 116

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
             A   F+ T   LDS    L   +G LDL T +         ITK     +     S  
Sbjct: 117 AAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPL 176

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           +   ++     E V  +  R  G+ LLG  +      + GVG +GKS     I+YA G+
Sbjct: 177 WQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGD 235


>gi|323139650|ref|ZP_08074692.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
 gi|322395082|gb|EFX97641.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
          Length = 265

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 65/230 (28%), Gaps = 17/230 (7%)

Query: 10  AKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKI----DKLPACGFGFVCGVGEQP 64
           A+  +  G+ ++PLR  +KRP     K + +  + + +    ++ P    G V G     
Sbjct: 14  ARSYLARGWSVLPLRPREKRPLAAWRKLQRERPTEDDLVDWFERWPDANIGIVTGEVSN- 72

Query: 65  LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124
           L   D+D K        +         P V           +  +   +   +       
Sbjct: 73  LIVLDVDPKHGGDIALKQLERRYRPLPPTVEAVTGGGGRHFYFTHPGFLT--RNRAGLAQ 130

Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
            +D+ G G Y VA      + + Y W +     ++   PL     +  +           
Sbjct: 131 GVDLRGDGGYIVAPPSVHPSGRPYQWASGHGPDEIALAPL-PRWLLTTIHGARAG----- 184

Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
              +      +           N  I +          N      + +  
Sbjct: 185 ---RSLNDWRQLVQEGVAEGQRNSSIASLTGHLLWHNVNPGVALELLLAW 231


>gi|291335967|gb|ADD95559.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C37]
          Length = 288

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 73/224 (32%), Gaps = 23/224 (10%)

Query: 54  FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
            G   G+    +   D+D          K   E L G P+V   ++      FR+ ++  
Sbjct: 69  VGIFTGIRGNGIVFLDVD---RNLKRCMKQWGESLAGAPMVTSTKQNAAKFLFRVPEKLW 125

Query: 114 KKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
           K+ K     +   +IL    +  V +  +P                +   P+  +  +  
Sbjct: 126 KEVKGRGLGKQDYEILWNSKKQGVIFGAYPGGDNSEPGEYKFEG-DLNSIPVAPDWLLAE 184

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
           + +  + I               +  +++      ++    +   G+    GS D W+ +
Sbjct: 185 MREPPKTIIK--------RDLDFSDRSDDEIFQIVKDCLDVIPNKGK----GSRDHWVKI 232

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEEN-----FNYKWDT 271
            MA+ +    +  G  +   WS     ++EE        + W +
Sbjct: 233 GMAI-NSALPTEAGMMLWSSWSSDDPDFEEEWKEDNPCEHIWHS 275


>gi|227828130|ref|YP_002829910.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.14.25]
 gi|227459926|gb|ACP38612.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.14.25]
          Length = 855

 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 105/695 (15%), Positives = 222/695 (31%), Gaps = 83/695 (11%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKLPAC---GFGFVCGVGEQ 63
           E A      G  +IPL+  +K P    G+++++  S  +I+K           VCG    
Sbjct: 7   EHALFYHTYGLSVIPLKPKEKIPIVEWGEYQKERPSISEIEKWFKDTDNNIAIVCGKVSG 66

Query: 64  PLYAFDIDSKDEKTANTFKDTFEI-------LHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
            L   D D  D +    F    E        ++ T +V  G+     I  R++      K
Sbjct: 67  NLVVIDFD--DTEIYEKFLKEVEKDNELSESVNNTWLVETGK--GYHIYLRVD----NDK 118

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
               +    +DI G G Y VA      + K Y +     +    +  ++SEE  + L   
Sbjct: 119 PVRTAKLPKIDIKGEGGYVVAPPSIHPSGKRYEFVR-FSKTTGHEIRVISEEQYQKLLAL 177

Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
            + IT   V+++ S    K     + +     +I A +   G+      H+  + +   +
Sbjct: 178 LERITGVKVEEEVSGENRKFRELTSEKVLKIADIIAPIYKEGQR-----HNVIMYLSGWL 232

Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE---EIGDTAKKRSTFTSLFYH 293
           +         K++          + +   N +  T D     +     ++R   +S  + 
Sbjct: 233 YKANVSYESAKKLVEF---ICDKFGDNECNDRLYTLDRTYGLKGNQPPEERLKTSSGLFE 289

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
             K       A        + + +             +  Y+K+   V  +         
Sbjct: 290 LFKGSMSEEEAIERVRELEEILEASEPNPKV---IIERLNYEKEIYAVLNFDRCEVLTAI 346

Query: 354 SIMNFLVSMKEDV----FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
            + N L      +     +++      ++       W     +R    +          L
Sbjct: 347 RVDNKLNYKDRVIIGCPENVTAIISPFSQIITYDITWKIPTQKRSIKLDRVTIDEILAYL 406

Query: 410 EAGSIFSITSDLLDSSSRFLG--EQDGILDLETGQKVKPTKELYITKSTG---TPFVEGE 464
           +A  +        D  +  L    + G+ + +TG                       + +
Sbjct: 407 KANGLVLRKYQAEDVLNAILNAMLRKGLANTKTGFDAPGFYWHGGKIIANKVEIRKPDKQ 466

Query: 465 PSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNKAQR--------FIHIRGVG 510
             +E L+L++ +         E+ +      + +      K +         ++++ GV 
Sbjct: 467 ELKEALELLNEFVNVWFSKAKEQFVTTIKIGLLLPFSFTVKQKFANEKGFLPWLYLYGVR 526

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET--- 567
            SGK+T   +I + F             ++++  E GK +      +G+ +   +     
Sbjct: 527 DSGKTTTAEMILHIFN------------IKDKYHERGKGDVDTEAKLGAILASDTFPHVI 574

Query: 568 -NENDEINAAKIKQMTGG--DCMTARLNYGNTYS--ESPASFTPFIVPNKHLFVRNPDDA 622
              +   +   + +M     +  TAR  + N     E PA     I  N+    R  D+A
Sbjct: 575 NEGSTLFDKPNLNEMIKQSVEGFTARQRFENKTIIKEYPAYAPLIITANQM---RITDEA 631

Query: 623 WW-RRYIVI--PFDKPIANRDASFAQKLETKYTLE 654
              +R ++I  P +   +  D    ++       +
Sbjct: 632 LTQKRLLIIRYPIEAKRSKDDIKEFREKVVPKLPK 666


>gi|330719217|ref|ZP_08313817.1| DNA primase [Leuconostoc fallax KCTC 3537]
          Length = 475

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/417 (13%), Positives = 121/417 (29%), Gaps = 24/417 (5%)

Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
             K++++       +  +Q    N K              S  +   D  +  +  ++G 
Sbjct: 68  TEKSARAYIEREALEKLKQYHAYNVKRMQDVSKTTLIQTISEHNPFEDQRTDIIAFKNGT 127

Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
            ++ETG      +  Y+         +   +    +  S  F +     +    +G A +
Sbjct: 128 YEIETGNITPNQQSHYLVNGHDIDINKDGQANNIEEWGSYLFGNSW--QFIKELLGYAFI 185

Query: 496 GGNK--AQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYVINAEASDIMQNRPPEAGKANPS 552
              K      I +  +GG+GKS   + I +   G + ++  +   I  +       A   
Sbjct: 186 PEYKTFNTIAIIVDEMGGTGKSYFFDSIVFPLLGTKNIVAKDMDTIAGSNGKS---ARFG 242

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           LI L      I  +  +        ++ ++GGD +       +               N+
Sbjct: 243 LIGLFEKLSNIHLDLPDTRIEVPDTLRSLSGGDKIDVEAKNADA-LSLKFYALLLFGANQ 301

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK--LETKYTL-----EAKKWFLKGVKA 665
              +   + A  +R  ++P   P A        K  L            A  + +     
Sbjct: 302 TPNI-AVNVALSQRIKIVPVTAPRARERPQEQAKRALLWDEKQAVKEVGAFAYSVLTAYQ 360

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC---DIGENLWEESHSLAKSYSEYR 722
              +       +    A  E  +  D    ++ D     +I            + +  + 
Sbjct: 361 QAKQRGKFSTSDEIETATREWLERQDLVTMFLKDAVQDTEIDFGGGATVVQTWELFELWL 420

Query: 723 EQELNYDRKRISTRTVTLNLKQKGFI--GGIKREKIEKEWKSKRIIKGLKLKPAFES 777
            +     +  I  +   + ++Q G+      K +   +         GL L   F  
Sbjct: 421 SENGINSK--IQRKQFNVKMEQLGYTKVKTRKHQSATETDNPVWSWDGLNLNKYFSD 475


>gi|288906322|ref|YP_003431544.1| phage associated protein [Streptococcus gallolyticus UCN34]
 gi|325979336|ref|YP_004289052.1| virulence-associated protein E [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288733048|emb|CBI14629.1| putative phage associated protein [Streptococcus gallolyticus
           UCN34]
 gi|325179264|emb|CBZ49308.1| virulence-associated protein E [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 542

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 120/363 (33%), Gaps = 32/363 (8%)

Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR--------- 427
              ++    +F    +    E+N   +     +   +      D L   +          
Sbjct: 108 EAQNQKAPLYFYHPDKGIYTEDNEFLQDLIMLIFPNATEKQAFDTLYKIAHQSPIKKIQG 167

Query: 428 -FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESE 480
            +      + +  TG+      ++ +T+   T +               D +   F   E
Sbjct: 168 EYTAIGKQLYNNATGKFEPFNPQIIVTRKIKTAYNPYAKEPTINGWKVTDWLKELFDGDE 227

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           E+     +    ++ G    ++   + G GG+GK T   L+    G + V + + +D+ +
Sbjct: 228 ELYKLAIQIFKASVTGQ-SLEKIFWLYGEGGTGKGTFQQLLINLVGLENVASLKITDLNK 286

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSE 599
           +R   +         L+G  +VI  +  ++  I + + +  +  GD MT        YS 
Sbjct: 287 SRFTTSI--------LLGKSLVIGDDVQKDAIIKDTSDMFSLATGDIMTIEDKGKKPYS- 337

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
              + T     N    +     A  RR+ ++ F      +  +   K +     E  ++ 
Sbjct: 338 LRLNMTVVQSSNGLPRMNGDVSAIDRRFRILTFSSKFKTK-PNPIIKKDYINRKEVLEYL 396

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSLAKSY 718
           +K     I   L+   P+       E ++  +    +++        + +  +  +   +
Sbjct: 397 VKLA---IETPLEDINPKKSQILLGEHQKDINPVLDFVEKTFKEDLASEFIPNDFIWYCW 453

Query: 719 SEY 721
            +Y
Sbjct: 454 KQY 456


>gi|269203634|ref|YP_003282903.1| putative phage primase [Staphylococcus aureus subsp. aureus ED98]
 gi|262075924|gb|ACY11897.1| putative phage primase [Staphylococcus aureus subsp. aureus ED98]
          Length = 618

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 57/429 (13%), Positives = 144/429 (33%), Gaps = 38/429 (8%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
           ++      +F   +E +  N  +   R       ++ +       K          I ++
Sbjct: 219 YVRFYNNVLFFRDDEGKFINDENMLKRKIHQFLDQKDSRNVEEVYKQLLLMS---PIITL 275

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-LDLVSGY 476
             D     S  +   +G L    G+  +   + +        +     + E   + ++  
Sbjct: 276 GEDE----SFEIHFNNGYLH--EGRFYEMDSKTFTPYHIDVNYNPDAEAVEVVDNYLNHL 329

Query: 477 FES-EEVMDYFTRCVGMALL----GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
             + E+        +   L+          +F    G GG+GK TL+ +I+     +   
Sbjct: 330 SNNNEDYKKLILEVLAHTLIINKEFKRMLAKFFIFVGDGGNGKGTLLTIIRAILNRKNCS 389

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK--IKQMTGGDCMTA 589
                D+   R           + + G  + +  +  +    N     +K ++  D ++ 
Sbjct: 390 GLSIGDMADER---------YFVTMQGKLVNLGDDIEDEPINNKQMKALKNISTCDFVST 440

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET 649
           R  +     E   + +     N  L      +++ RR + +P     A ++ +F QKL  
Sbjct: 441 RQLFQQAT-EVEMTLSLIFTSNHILKSWEKGESYKRRVMWLPIYTKPAKKEKNFIQKLTQ 499

Query: 650 KYTLEAK-KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
           +  LE   K  ++  +   +      + EV  K  ++  +  + +  ++ D  +  + + 
Sbjct: 500 QDALEYWIKLIVEAYERLYANE-KFTVSEVVEKFNDQYHEENNNFLLYLQD-FERKDFIN 557

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
            +   +   Y  + E+    D    S + V   +++K    G+  +       ++R+   
Sbjct: 558 MKPKQIYDEYEAWAEEN---DLHPQSKKQVKDTIEKKY---GLVVKGRRINGSTQRVY-- 609

Query: 769 LKLKPAFES 777
           ++L    + 
Sbjct: 610 IELNEEVKE 618


>gi|254559012|ref|YP_003066107.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4]
 gi|254266290|emb|CAX22051.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4]
          Length = 1433

 Score =  123 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 30/217 (13%)

Query: 10  AKQAIHNGFKLIPLRLGDKR-PQ-------RLGKWEEQLLSSEKIDKL----PACGFGFV 57
             + +  G+ + P     +R P        + G+++++L +  +ID      P+     +
Sbjct: 131 GPELVTRGWSVFPQTRDHRRGPGLVDNAALKWGEYKDRLPTLGEIDWWSRFCPSHNVACI 190

Query: 58  CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPF---------- 106
            G      +A DID  D + +N      +   G TP  R+G+ P+I++ +          
Sbjct: 191 LGAASGGTWALDIDVSDAELSNAIVKLADDHLGYTPFSRVGRVPRIVLVYRQAPVSEVGA 250

Query: 107 ----RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT-PPHRFKVED 161
               R++      +   E + G +++LG G+    + +H  T K + W    PH    E 
Sbjct: 251 DQVIRVSPHRFAARPG-EDSPGQIEVLGHGKPVTFFGLHHGTGKYFIWVDRSPHVLGPEH 309

Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198
            PL++ +  +        +  P  K      P   WT
Sbjct: 310 APLVTRQQYDAFLDAVHAL-HPFAKPAVHEAPDAAWT 345


>gi|319647186|ref|ZP_08001409.1| hypothetical protein HMPREF1012_02448 [Bacillus sp. BT1B_CT2]
 gi|317390745|gb|EFV71549.1| hypothetical protein HMPREF1012_02448 [Bacillus sp. BT1B_CT2]
          Length = 167

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 15/145 (10%)

Query: 629 VIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
           +IPF   I     D    QKL         +W ++G   +  +GL    PE   KA E  
Sbjct: 1   MIPFTVTIPKEKVDKKLPQKL-AAEMPGILRWAVEGCLKWQKEGLG--EPEAIKKATEGY 57

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R+  D    ++++ C        E+  L K Y ++  +    +   +  R     L+ +G
Sbjct: 58  REDMDILGPFMEERCIQHPKAKVEAKELYKDYKDWCFENDEIE---LKNRAFYRQLEIRG 114

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKL 771
           F       K  +   +K    G+ L
Sbjct: 115 F-------KKYRGNYNKNYFDGIGL 132


>gi|254504141|ref|ZP_05116292.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11]
 gi|222440212|gb|EEE46891.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11]
          Length = 1293

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 126/352 (35%), Gaps = 46/352 (13%)

Query: 2   PVMQWKEQAKQAI----HNGFKLIPLRLGDKRPQRLGK-------WEEQ---------LL 41
           PV +    A + I     N   ++P    DKRP + G        W +           L
Sbjct: 70  PVRRSSYHAARLIARFGQNNVHVLPAMPKDKRPGKYGGSGWFGGTWGQFTNPGGETIYPL 129

Query: 42  SSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKP 100
               +D L   G   +   G   + A D+D  D   A  F+   E+L   +P  RIG+ P
Sbjct: 130 KERALDVLQHHGGAGITLGGHHNIAAIDMDVMDPVLAAEFESVLELLCDKSPFERIGKSP 189

Query: 101 KILIPFRMNKEGIKKKKTTE---STQGHLDILGCG-QYFVAYNIHPKTKKEYTWTT-PPH 155
           K L  +R  K             S +  +++     Q+ V Y +H  TK+ YTW     +
Sbjct: 190 KKLWLYRTEKPIKSYASGEWFTDSGKNQVELRAQSNQFIVCYGVHKDTKRPYTWPNASLY 249

Query: 156 RFKVEDTPLLSEEDVEYLFKFF---------QEITVPLVKDKKSIIPSKTWTNNNNRQYT 206
              V D PL+S + +  + + F         + I     +    +  ++   N++  + T
Sbjct: 250 DCDVSDIPLISADALIDMLEVFDGMAARHGAKGIAKKQNRGAVPVGLAEANRNSHRLEDT 309

Query: 207 N--REITAFL-SCFGEEFYNG-----SHDEWIPVVMAVHHETRGSSKGKE-IARRWSKQG 257
               +  AF+  C   +F++       +  W   + ++ +         E +A   S   
Sbjct: 310 TPLEDAVAFIVECAEGDFFDPPEELLGYHGWTNSIASIVNSVPHDRALAESLAHDISAAL 369

Query: 258 STYD-EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
             Y+  ++    +D++  +++      +   + ++     L   G      +
Sbjct: 370 PGYEGPDDVQKTFDSY-HDDLDHRTGTKLGASYIYRAAKSLGWNGYERFDLT 420


>gi|207270806|ref|YP_002261448.1| gp32 [Listeria phage P40]
 gi|204308021|gb|ACI00392.1| gp32 [Listeria phage P40]
          Length = 635

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 85/512 (16%), Positives = 175/512 (34%), Gaps = 61/512 (11%)

Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFL 325
             K  TF  E + D A        +         + L +        + + S Y+   F 
Sbjct: 172 IPKVATFINEFLFDEALGDKELNKIIDQALDS--ETLGSGNLQKNMAQQIVSDYRIVRFR 229

Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385
            +     WY +D  N +    +L K ++ I+ F   +  D    + E ++  ++ +    
Sbjct: 230 GS----LWYYED--NRFKMDDSLKKESSQILRFCYILAGD--APTHESDEIFRHVERLVE 281

Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445
              T+       +N               F    DLL+ +  ++                
Sbjct: 282 VIPTEKVFHIRFKNGILDPARGEASGIGSFIEGGDLLEFTPYYIDVN------------- 328

Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQ--- 501
                         + + EP     D ++      E+       C+G  L+   + +   
Sbjct: 329 -------------YYPDAEPVAMVDDYITNLTEGDEDYRKLLLECLGSTLITNPETKRAL 375

Query: 502 -RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
            +     G GG GK T++ +++   G++ V  +   D+ + +          L  L G  
Sbjct: 376 AKLFIFIGKGGEGKGTMLTILRRILGDESVSASSIEDLTREQ---------YLYSLTGKL 426

Query: 561 IVIISETNENDEINAAK---IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
             +  +   N  IN  K   +K ++  D +  R     ++  +  + +  +  N  L   
Sbjct: 427 ANLCDDVE-NKPINDKKMKILKNISTCDRIELRKMREQSF-PATLTCSLILTSNHLLKSF 484

Query: 618 NPDDAWWRRYIVIP-FDKPIANRDASFAQKLETKYTLEAK-KWFLKGVKAYISKGLDVDI 675
              ++W RR + +P F++    +D  F  K+ T   LE   +  ++G    I  G  +  
Sbjct: 485 EKGESWKRRVVWLPMFNRGF-KKDPRFITKVTTPKALEYWVRLMMEGYNRIIENG-QLTS 542

Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
            E   K  EE  +  +    +  D   I + +  +  ++   Y+ + EQE+    K +S 
Sbjct: 543 SEKINKYNEEYERENNNVIEY-CDSITIDDIVGLKPKAVYDKYTTWYEQEIGEKDKALSA 601

Query: 736 RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
           + V   +    F   +K ++I         I+
Sbjct: 602 KIVKETVSSV-FDVEVKPQRIHGTTVKAYSIR 632


>gi|291569389|dbj|BAI91661.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 908

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 91/770 (11%), Positives = 201/770 (26%), Gaps = 132/770 (17%)

Query: 18  FKLIPLRLGDKRPQRLGKWE-----EQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS 72
           + L P+  G+K P R   W+      + +  ++I K  A G+G   G     + A D D 
Sbjct: 24  WVLTPVN-GEKAPYRT-GWQKESAISRDVLVDEISKGRAKGYGLRTGKVSGGIVAIDADG 81

Query: 73  KDEKTANTFKDTFEILHGTPIV---RIGQKPKILIPFRMNKEGIKKKKTTESTQGH---- 125
                 +   +  E L G P       G++ +    + +      K  T +   GH    
Sbjct: 82  ------HKAHELAESLGGLPPTVSFTSGKEGRAQYLYLIPDTYWDKITTKKLPTGHKSSD 135

Query: 126 -----LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
                L++   G   V          EY W   P+   +   PL     +  + K   + 
Sbjct: 136 GKEELLELRWDGCQSVLPPSKHPETGEYKWLKSPNEIDIAQAPL---WVINKMLKETPQP 192

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG-SHDEWIPVVMAVHHE 239
              +V  +   + +    ++     T     +      +   N      W+       + 
Sbjct: 193 MPLVVLPESIPLEACLTKDDRQLLKTGASQGSRNDSAAKLARNLIGTHNWLHS-----NG 247

Query: 240 TRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
            R       +   +  +             W + +      T  +    T+    + +  
Sbjct: 248 ERCQDDPHILFNNYCDRCNPPLPPRERGAIWKSAEKSNPTPTLSEDY-LTNCVKSYRRQP 306

Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
                     DA N  +    +               KD   +        +        
Sbjct: 307 THTPTHWTEKDAINTVVKCDLQ-------------ILKDIEKIKRAFGERIRYNTRFKVI 353

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
            +  +    D  E         +        +    +V +++        LE        
Sbjct: 354 EIDGEPINPDAPEIDLAKKGGVEIKGSLRIKNQIILDVAQSNSFDPFEDYLEDCHKKWDG 413

Query: 419 SDLLD-SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
            + ++ ++ R+ G  +              +        GT     +P  +F  L+    
Sbjct: 414 QNRINGAAKRYFGTDN-----------PLHQRYLECLLVGTVARTKKPGCKFDTLL---- 458

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
                                       + G  G GKST     +   G+ +  +     
Sbjct: 459 ---------------------------ILHGQQGIGKST---WFRTMVGDDFFCDDMGDF 488

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
             ++   +  ++                  N      + KIK          R  Y    
Sbjct: 489 KEKDERLKMHQS---------VWTEWAEVENNISRSTSGKIKAFITTQTDNIRPPYAQRS 539

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
           +  P +       N+  F  +   A  RR++VIP  + I     +  +        +   
Sbjct: 540 TAYPRANVLVGSTNRTDFNHDETGA--RRFMVIPVSQVIP---TNLVED----ERDQLWG 590

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY------QAWIDDCCD--IGENLWE 709
             ++       +G    +         EE+Q  +         +++ +  +  + +    
Sbjct: 591 EVVE----LYRQGRCFYL-------TREEQQQANLLNKEFTEHSYLHELIEQFVTDKDTV 639

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
            +  +     +   +++  +      R +   +   GF          K 
Sbjct: 640 TTEEIKDYLGKLDGEKIKTNEFNRIEREIRKVMTNLGFSQKRFNRNGTKR 689


>gi|254431281|ref|ZP_05044984.1| Primase C terminal 2 family [Cyanobium sp. PCC 7001]
 gi|197625734|gb|EDY38293.1| Primase C terminal 2 family [Cyanobium sp. PCC 7001]
          Length = 901

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 82/282 (29%), Gaps = 32/282 (11%)

Query: 40  LLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD--EKTANTFKDTFEILHGTPIVRIG 97
              + ++D +P   +G   G     +   D+D++   E        T E L  T     G
Sbjct: 58  PQEAAELDLMPPA-WGLKSGPAS-GVVVLDLDAEGWRESFQAVTGHTVEDLPATLSWTSG 115

Query: 98  QKPKILIPFRMNKEGIKKKKTTE-----STQGHLDILGCGQYFVAYNIHPKTKKEYTWTT 152
           +  +    F +  E     +          +   ++       V    HP+T + Y W  
Sbjct: 116 KPGRSGRAFTVPPEWWPALRNRRPWSNDDGETLWELRWDRHQAVIIGTHPETGR-YRWRP 174

Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
                 V    +  +  +E L       T P+                            
Sbjct: 175 GGDPKDVG-LAVAPDWLLEPLAVQELPDTEPITPTA----------------EDTERAVQ 217

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
            L+       + S+ +W+   MA+H           +   WS+Q   +DE     KW + 
Sbjct: 218 MLAHIDP-AAHTSYGDWLRAGMALH---DTDPDLLSVWVEWSRQMPNFDEAECLEKWSSL 273

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKA 314
                G +A  R T   L    G   P+   AS       K 
Sbjct: 274 GKGHRGRSATIR-TLHYLAKAGGYREPRRCKASSPRAGAAKT 314


>gi|186687026|ref|YP_001870415.1| hypothetical protein Npun_DF027 [Nostoc punctiforme PCC 73102]
 gi|186469650|gb|ACC85447.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
          Length = 1002

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 72/571 (12%), Positives = 155/571 (27%), Gaps = 85/571 (14%)

Query: 260 YDEENFNYKWDTFDFEEIGDTAKK--RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317
           Y   +        +  E     ++   +            +           A+ +  F 
Sbjct: 298 YKSSDIKEILGQMETPEFIRRLEQEIHAAVAKREQLAEVNVIDSDDDQNPVVAFTQQAFQ 357

Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377
                     A  K +Y          +    K +          ++ ++D        N
Sbjct: 358 ALYGDKNWICAADKLYYH---------TGNHYKHSPDSTE-----RKRIYDFCNSFVVEN 403

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
           +  K    + +    ++ +E           ++   I          +   +   +GI+ 
Sbjct: 404 EQGKKTCPYASPSSVKKVLE----WAKMGTEIDPELI----------NPPGVNCTNGIVK 449

Query: 438 LE------TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
           +E      T +    T E Y        +           L++     +   + F R + 
Sbjct: 450 VEWEGRNFTVRLAPHTPEDYYIYEPLIEYNPNADDTYCEQLLA--CLDKPQQEIFLRNIA 507

Query: 492 MALLGGN------KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
            +L          +  + +   G+G +GK  L   +   +G   + +        +    
Sbjct: 508 ASLDLQTVRKFRGREVKAMFAIGLGSNGKDALRECVSTIYGKNGLTSVSL----GDFQSY 563

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASF 604
                  L  L+ SR+   SE  +   I+    +K    GD +      G  + E  ++ 
Sbjct: 564 DEGRKFGLAPLIYSRVNWASENPQTSRIDRLQSLKLFVTGDTLHCEHK-GKDHIEFSSNA 622

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-----------DASFAQK---LETK 650
                 N+    +    A   R  ++ F K   +            D  F      + TK
Sbjct: 623 IGIFNLNETPAFQGVIQAIKDRIAILEFKKTFVDNPSPNNLNEIKGDPRFRYDQDFIRTK 682

Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD----CCDIGE- 705
                    LK +   I  G+D    E    A    ++  +    +I+D      + GE 
Sbjct: 683 LAPAFLNRILKALNNLIESGIDY---ECTTDAFRNLQRENNHLFDFIEDEKLGYVEGGEM 739

Query: 706 ---NLWEESHSLA----------KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
               LW    +             +   + +Q    D+       +   + Q        
Sbjct: 740 SASALWMLLENWYIQNGTLTIDENNRRTWIDQVRPSDKNVKGINQIIARIAQLFPKAVRA 799

Query: 753 REKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
               +   K   I+KG+ +      + +N+ 
Sbjct: 800 TRYCDIRKKQIPILKGIGIIENTRPIIENTR 830


>gi|150396564|ref|YP_001327031.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419]
 gi|150028079|gb|ABR60196.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419]
          Length = 793

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 19/217 (8%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL-----PACGFGFVCGVG 61
            +  +  I NG++ +P +   K P     W       ++ID            G + G  
Sbjct: 13  ADVRRALIENGYRYVPAK--GKGPIIKD-WPNFSQRPDQIDGYLRKHADHRNTGVLTG-- 67

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGT--PIVRIGQKPKILIPFRMNKEGIKKKKT- 118
              + A D+D+ D   A+        + G      R+G+ PK L  F+  +   K     
Sbjct: 68  --DIVAVDVDAPDAAIADQLIARLMAIPGAKRAPYRVGKAPKCLFIFKATEPRRKASTGE 125

Query: 119 --TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP-PHRFKVEDTPLLSEEDVEYLFK 175
                ++  ++ILG GQ FVAY  H +T   Y W+   P    + D P ++ + V+    
Sbjct: 126 YLIGGSKCQVEILGQGQQFVAYGNHAETGLPYVWSNGEPLSIPLHDLPEITPDAVDAFLA 185

Query: 176 FFQEITVPLVKD-KKSIIPSKTWTNNNNRQYTNREIT 211
               I        KK   P +     +          
Sbjct: 186 DADAILAKAGTPMKKKSEPRQQGRGADTFWQRVNSAA 222


>gi|284050056|ref|ZP_06380266.1| hypothetical protein AplaP_01145 [Arthrospira platensis str.
           Paraca]
          Length = 706

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 91/770 (11%), Positives = 201/770 (26%), Gaps = 132/770 (17%)

Query: 18  FKLIPLRLGDKRPQRLGKWE-----EQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS 72
           + L P+  G+K P R   W+      + +  ++I K  A G+G   G     + A D D 
Sbjct: 24  WVLTPVN-GEKAPYRT-GWQKESAISRDVLVDEISKGRAKGYGLRTGKVSGGIVAIDADG 81

Query: 73  KDEKTANTFKDTFEILHGTPIV---RIGQKPKILIPFRMNKEGIKKKKTTESTQGH---- 125
                 +   +  E L G P       G++ +    + +      K  T +   GH    
Sbjct: 82  ------HKAHELAESLGGLPPTVSFTSGKEGRAQYLYLIPDTYWDKITTKKLPTGHKSSD 135

Query: 126 -----LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
                L++   G   V          EY W   P+   +   PL     +  + K   + 
Sbjct: 136 GKEELLELRWDGCQSVLPPSKHPETGEYKWLKSPNEIDIAQAPL---WVINKMLKETPQP 192

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG-SHDEWIPVVMAVHHE 239
              +V  +   + +    ++     T     +      +   N      W+       + 
Sbjct: 193 MPLVVLPESIPLEACLTKDDRQLLKTGASQGSRNDSAAKLARNLIGTHNWLHS-----NG 247

Query: 240 TRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
            R       +   +  +             W + +      T  +    T+    + +  
Sbjct: 248 ERCQDDPHILFNNYCDRCNPPLPPRERGAIWKSAEKSNPTPTLSEDY-LTNCVKSYRRQP 306

Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
                     DA N  +    +               KD   +        +        
Sbjct: 307 THTPTHWTEKDAINTVVKCDLQ-------------ILKDIEKIKRAFGERIRYNTRFKVI 353

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
            +  +    D  E         +        +    +V +++        LE        
Sbjct: 354 EIDGEPINPDAPEIDLAKKGGVEIKGSLRIKNQIILDVAQSNSFDPFEDYLEDCHKKWDG 413

Query: 419 SDLLD-SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
            + ++ ++ R+ G  +              +        GT     +P  +F  L+    
Sbjct: 414 QNRINGAAKRYFGTDN-----------PLHQRYLECLLVGTVARTKKPGCKFDTLL---- 458

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
                                       + G  G GKST     +   G+ +  +     
Sbjct: 459 ---------------------------ILHGQQGIGKST---WFRTMVGDDFFCDDMGDF 488

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
             ++   +  ++                  N      + KIK          R  Y    
Sbjct: 489 KEKDERLKMHQS---------VWTEWAEVENNISRSTSGKIKAFITTQTDNIRPPYAQRS 539

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
           +  P +       N+  F  +   A  RR++VIP  + I     +  +        +   
Sbjct: 540 TAYPRANVLVGSTNRTDFNHDETGA--RRFMVIPVSQVIP---TNLVED----ERDQLWG 590

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY------QAWIDDCCD--IGENLWE 709
             ++       +G    +         EE+Q  +         +++ +  +  + +    
Sbjct: 591 EVVE----LYRQGRCFYL-------TREEQQQANLLNKEFTEHSYLHELIEQFVTDKDTV 639

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
            +  +     +   +++  +      R +   +   GF          K 
Sbjct: 640 TTEEIKDYLGKLDGEKIKTNEFNRIEREIRKVMTNLGFSQKRFNRNGTKR 689


>gi|254517351|ref|ZP_05129408.1| Primase C terminal 2 family protein [gamma proteobacterium NOR5-3]
 gi|219674189|gb|EED30558.1| Primase C terminal 2 family protein [gamma proteobacterium NOR5-3]
          Length = 703

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/273 (18%), Positives = 91/273 (33%), Gaps = 23/273 (8%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKID----KLPACGFGFVCGVGEQP 64
           A      GF  IPLR G K    +   W E  LS EKI     K P      +       
Sbjct: 10  ALDLFRRGFTPIPLRRGTKATAVKWDPWVE-DLSEEKIRHHFNKYPNHELAVLL---NDE 65

Query: 65  LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124
           L   D D+ D  +A       +    TP + +       +  R       K         
Sbjct: 66  LLVLDADTPDAVSALH--QLLKSYEITPTLSVNSARGCHVYLRRASGTYAKSDAPNKDAN 123

Query: 125 H--LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
              +DI   G+   A+   P T K           +V D P + +  ++ +++       
Sbjct: 124 PAAIDIK-TGRAITAFP--PSTGKSIDVD---EIERVSDLPEVDQVFIDAVYRHNGRDAP 177

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242
             +  +          +++  ++    I   L+       +  + +W+ + +A++ E  G
Sbjct: 178 RPLSKQTPPATVLVPLSSSELEHKRTRIAELLAHIDP---DTGYHDWLRIGIAIYVELEG 234

Query: 243 SSKGKEIARRWSKQGSTY-DEENFNYKWDTFDF 274
           +  G ++   WS +G+ Y        KW  F  
Sbjct: 235 APVGFQLFDEWSAKGTKYPGTAALQDKWGKFGR 267


>gi|186686657|ref|YP_001869852.1| helicase superfamily 3 [Nostoc punctiforme PCC 73102]
 gi|186469691|gb|ACC85487.1| Helicase superfamily 3 [Nostoc punctiforme PCC 73102]
          Length = 1019

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/488 (13%), Positives = 147/488 (30%), Gaps = 67/488 (13%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF------WFNTDYRRQNVEENSKAK 403
           K      +++ +     +      + +  +++  R       +   + + +     +   
Sbjct: 366 KTLYGDKSWICAADRLYWHTGNHYKHSPDDTERRRITNFCNSFAVENEQGKKSYPYASPS 425

Query: 404 STAQSLE-AGSIFSITSDLLDSSSRFLGEQDGIL------DLETGQKVKPTKELYITKST 456
           S  + LE A     I ++LL  +   +   +GI+      +    +    T E Y     
Sbjct: 426 SVKKVLEWAKMRTGIEAELL--NPPGINCTNGIVRPVLIGNKVIPRLDPHTPEDYFIYEP 483

Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN------KAQRFIHIRGVG 510
              +     + +   L+          +   R +  ++          +  + I   G+G
Sbjct: 484 LIEYNPNADTTDCDRLLE--CLDRPQQEILLRNLAASIDLKTVRKLRGREVKAILAVGLG 541

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
            +GK  L   +   +G   + +   +D              +L  LM SR+   SE  + 
Sbjct: 542 SNGKDALRECVSIIYGENGLTSVSLADF----QLYDEGRKFNLAPLMHSRVNWASENPQT 597

Query: 571 DEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
             I+    +K    G+ +      G  + E           N+   ++    A   R  V
Sbjct: 598 SRIDKIQSLKLFVTGNKLHCERK-GKDHIEFTPEAIGIFNLNETPSLQGVMKAIQDRIAV 656

Query: 630 IPFDKPIANR-----------DASFAQKLE---TKYTLEAKKWFLKGVKAYISKGLDVDI 675
           + F K                D  FA   E   TK         L+ +   I +G+D   
Sbjct: 657 LEFKKTFEKNPDPNNPNELLADPRFAYDKEFIRTKVAPAFLNKMLQALNDLIEEGIDY-- 714

Query: 676 PEVCLKAKEEERQGTDTYQAWID--DCCDI------GENLWEESHSLAKS---------- 717
            E    A    ++  +    +I+  + C +       + LW                   
Sbjct: 715 -ECTTDAFYNLQKENNHLFDFIEAANLCYVPGKELTAKELWVRLEHYYTQTGTLTIDSDN 773

Query: 718 -YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI-EKEWKSKRIIKGLKLKPAF 775
               + EQ    D+       V   + Q  F   +K  +  +   ++  ++KG+ +    
Sbjct: 774 NRRTWSEQVRPSDKNVKGINQVIARIAQL-FPKAVKGTRYCDIAKRNIPVLKGIGILEVT 832

Query: 776 ESVDDNSN 783
            +  D + 
Sbjct: 833 RTTLDETR 840


>gi|5420103|emb|CAB46558.1| putative DNA primase [Streptococcus thermophilus]
          Length = 556

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 109/349 (31%), Gaps = 27/349 (7%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-----VSGYF 477
           D    ++     + + ETG+  +    + +T+     +                 + G F
Sbjct: 184 DKQENYVVVGGELYNNETGEFTQFDPRIIVTRKVRMGYNPDATEPIIDGWKPTVWLKGLF 243

Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
               +  D   + +   + G         + G GG+GK T   L++   G++ V +    
Sbjct: 244 NGDRDSYDLAIQIIRATITGKTLENI-FWLYGEGGTGKGTFQTLLENLVGSENVAS---- 298

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGN 595
                   +          L+G  +VI  +  ++  I + + +  +  GD +        
Sbjct: 299 -----FKIDGASGKFDTSILIGKTVVIGDDIQKDVVIKDTSVVFSLATGDPIRIEDKGKR 353

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE-TKYTLE 654
            Y+      T     N    +     A  RR+ V+ F +     D          K  LE
Sbjct: 354 PYTTRK-RMTVVQSSNGFPRMNADQKAINRRFRVLTFSELKGKADKRIKNDYVGRKEVLE 412

Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC--DIGENLWEESH 712
                   VK  I        P+  ++  +E  +  +    ++D     ++ +  +  + 
Sbjct: 413 YF------VKLAIETPFRDVNPQKSIEFLDEAYKEMNPVADFVDRFFNDEVIKCNYVPNG 466

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
            + + +  Y E+  N +    S        K        K   I+K  K
Sbjct: 467 YVFECFKAYCEKNQNRNYFLNSRTLHKQIKKILPKTFRPKEVTIKKGQK 515


>gi|300941010|ref|ZP_07155532.1| toprim domain protein [Escherichia coli MS 21-1]
 gi|300454249|gb|EFK17742.1| toprim domain protein [Escherichia coli MS 21-1]
          Length = 500

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 68/209 (32%), Gaps = 19/209 (9%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD + G     +   ++       F            +  F   +     
Sbjct: 299 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 358

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS +  +     G     +A    
Sbjct: 359 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 418

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 419 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 468

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRR 626
           S          V N  +   +      RR
Sbjct: 469 STHIP-AVILAVNNNPMRFTDRSGGVSRR 496


>gi|158522714|ref|YP_001530584.1| bifunctional DNA primase/polymerase [Desulfococcus oleovorans Hxd3]
 gi|158511540|gb|ABW68507.1| Bifunctional DNA primase/polymerase [Desulfococcus oleovorans Hxd3]
          Length = 746

 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 89/707 (12%), Positives = 194/707 (27%), Gaps = 125/707 (17%)

Query: 5   QWKEQAKQAIHNGFKLIPL----------------RLGDKRPQR-----LGKWEEQLLSS 43
           +W+   KQ    G+ + PL                  G K P          ++    S 
Sbjct: 6   KWQ-AVKQYYKKGWPIFPLHTIKDGKCSCDKPTCTTPG-KHPMYDAEDLTEGFKNASSSQ 63

Query: 44  EKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK 99
           +++ K     P    G   G       A DID  D        +         + +    
Sbjct: 64  QQLKKWWSRWPDANIGIRTGKES--FIAIDIDLPDGPDNMKKLEKTYGNLPKTVNQKTGG 121

Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
               + F+       +        G++DI G G Y VA        K+Y W   P   ++
Sbjct: 122 GGYQLFFKPPHT---RIPCKTGLLGNIDIRGEGGYVVAPPSDHIKNKKYKWRHSPDSIEI 178

Query: 160 EDTPLLSEEDVEYLFKF--FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217
              P    + +E   K+         + + K++   ++   +         EI   L   
Sbjct: 179 AGMPEWLTDLIEKGEKYCDLVHSLKKIPEGKRNDTLAEIAGSLRGEGRELDEIHGVLRKA 238

Query: 218 GEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
            +     + ++                + K+IA   S                T D +  
Sbjct: 239 NKNRCTPALED---------------DEVKKIAESISSYPPNAS---------TSDNKNK 274

Query: 278 GDTAKKRSTFTSLFYHHGK---LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334
                + + F   F+   +       G   +  +    + +          +        
Sbjct: 275 NAKTAQFNKFIETFFEKNEILQDTNSGFFYAIINGEGGEQVLDTRSDNFKRHC------- 327

Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
                       ++ K + ++++     ++D+  + +  E N  +               
Sbjct: 328 ----------RSSIRKSSDALIS-----RQDIDLIIDHLEANAVDQNKKGEVSI------ 366

Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
            +           + E   +  ITS+             G    +         +  +  
Sbjct: 367 RIARVDNTIYLDLADEKKQVVKITSE-------------GWTICQETPVHFYRPQGMLPL 413

Query: 455 STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
                       + FL     +   +         +  AL         + + G  GS K
Sbjct: 414 PVPVEGKGFAKLKHFLPAGKQH---KHTCRLILAWLVGALNPQG-PYVALILTGPKGSSK 469

Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
           STL   +K+   +                  +G     +I    + +V     +   +  
Sbjct: 470 STLTEFLKFLI-DPAKATT---------RALSGNEETLMIYCKNNWLVSFDNLSVLSQPM 519

Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
           +  + +++ G  ++ R  Y +       +  P I+   + F++  D     R ++I  + 
Sbjct: 520 SDALCRVSTGGGLSKRKQYTDDEEYVFQANRPIIMNGINNFIKADD--LVDRSLII--EL 575

Query: 635 PIANRDASFAQK----LETKYTLEAKKWFLKGV-KAYISKGLDVDIP 676
           P  +      +K       +         LK V  A  ++ + +D+P
Sbjct: 576 PFIDDAKRLTKKRLNQEFQEAQPLILGSLLKAVSSALKNENIKIDVP 622


>gi|315122493|ref|YP_004062982.1| P4 family phage/plasmid primase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495895|gb|ADR52494.1| P4 family phage/plasmid primase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 120

 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 98/118 (83%), Positives = 108/118 (91%), Gaps = 2/118 (1%)

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
           MTAR NYGNTYSE+ ASFTPFIV NKHLFVRN DDAWWRRYIVIPFDKPIANRDA+FAQK
Sbjct: 1   MTARFNYGNTYSEARASFTPFIVSNKHLFVRNLDDAWWRRYIVIPFDKPIANRDATFAQK 60

Query: 647 LETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
           LET+Y LEAKKWFL+G+KAYI  G  LD+D+PEVC+ AKEEER+GTDTYQAWIDDCC+
Sbjct: 61  LETEYALEAKKWFLEGIKAYIRNGRNLDIDVPEVCINAKEEERRGTDTYQAWIDDCCE 118


>gi|62362410|ref|YP_224275.1| hypothetical protein LPPPVgp44 [Listonella phage phiHSIC]
 gi|58220032|gb|AAW67544.1| putative phage protein [Listonella phage phiHSIC]
          Length = 815

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 91/686 (13%), Positives = 183/686 (26%), Gaps = 92/686 (13%)

Query: 12  QAIHNGFKLIPLRLGDK----------------RPQRLGKWEEQLLSSEKI----DKLPA 51
             I  GF ++ L    K                +  +L  W+ +  + +++    D  P 
Sbjct: 5   DYIDAGFSIVELHPMTKEKHCTCFKGKECAMAGKHPKLQNWQSKQYTEDELVAIEDSSPD 64

Query: 52  CGFGFVCGVGEQPLYAFDIDSKDEKTA---NTFKDTFEILHGTPIVRIGQKPKILIPFRM 108
                  G         DID +++         KDT           +         +  
Sbjct: 65  S-----FGALVGGYLVIDIDPRNDGDNSYEQLCKDTNTDYEKESSFVVFTGGGGKHIYFK 119

Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
             EG++ K         +D    G + V      K+   Y          + + P    E
Sbjct: 120 APEGVQLKSKLGQY-NGVDFKSSG-FVVGAGSLHKSGLLYESIKG-APSDISEPPKKLVE 176

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228
            +E                 K + P  +  +    +   ++I   L C      +  +++
Sbjct: 177 LLE-----------------KKVNPKNSAFSLPEDKVDQQKIQDMLDCIDP---DCDYED 216

Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
           W+ + MA+H ET G  +G ++   WS  GS Y+++  ++KW +F        +    T  
Sbjct: 217 WLHIGMAIHDETCG--EGFDLWDAWSSNGSKYNQKEMDFKWHSFG------KSPNPVTIG 268

Query: 289 SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348
           +L            +    +   NK     +           +     +      +   +
Sbjct: 269 TLIRIAEDNGYSEPV----TFESNKPTVVDWDDNDPRIEKAIELAMINEAAERAQYHDAM 324

Query: 349 D------KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
           +      + +  I+  + + KED     ++    +            D+  +      K 
Sbjct: 325 NDLDFGIEESKEIVAQIKADKEDDDTTLDDKPKFDLTKPPGLVGEIADWINRRGHAPRKM 384

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
            + A +L+A S        + S+       +  +    G      KE             
Sbjct: 385 LAIAAALQAVSNSCGIYWRMSSNGFNDLCPNLYMVCIAGSGT--GKESIQNNQMAIQREL 442

Query: 463 GEPSQEFLDLVSGYFESEEVMDYFTR--CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
           G     F          +E+     R       +     A     + G G +  +    +
Sbjct: 443 GLGGSMF----GKIKSDKEMYTNLLRSQVNSYVI--DEFASIMQKVFGGGKNTAAYNAGI 496

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
                                      +    L  L         + NE  E +  K KQ
Sbjct: 497 ESVLLQLFSKSGGRIEFGGDEADAIKSQLRGELAALEKK-----KDENEFTEYDEKKEKQ 551

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
           +             + +       TP                + R  +VI         +
Sbjct: 552 ILRLYENAYDGFLDDPFVSLTGYSTPTEFFKYINRSMVDSGFFARMTVVIE-----PENN 606

Query: 641 ASFA---QKLETKYTLEAKKWFLKGV 663
                  +K+  K   E+ K+ L   
Sbjct: 607 PGPMPASEKILDKEIPESIKYKLLAA 632


>gi|315634869|ref|ZP_07890151.1| bacteriophage P4 DNA primase [Aggregatibacter segnis ATCC 33393]
 gi|315476421|gb|EFU67171.1| bacteriophage P4 DNA primase [Aggregatibacter segnis ATCC 33393]
          Length = 348

 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 111/363 (30%), Gaps = 33/363 (9%)

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGN 498
            +     +E ++T      +   E +   F + ++      E+        +   L   +
Sbjct: 1   MEFSPHCRENWLTSFIPYDYTNQEENTPHFDNWLNFVADGKEDKKQAILGALYAILTNRH 60

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
             Q F  + G GGSGKS    +     G Q        D+ + R  E           + 
Sbjct: 61  NWQLFFEVTGDGGSGKSVFAQIATMLAGEQNTERGRLVDLDEPRGRE---------NFVN 111

Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
             +++  E +     +   +K ++ GD +     + + +          IV N+      
Sbjct: 112 KTLILCLEQSRYGG-DGGGLKSISAGDLVNIDPKHKSKFKADIP-AIVLIVNNEPTRFTE 169

Query: 619 PDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
            +    RR ++  FDK +    RD     K+E           ++  K  +     +   
Sbjct: 170 RNGGIERRRVIFHFDKVVPESKRDPHLMDKIE-AEAGGIIYKLIQAFKNPLDAKKALTKQ 228

Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGE-------NLWE--ESHSLAKSYSEYREQELN 727
           +   +A E  +  +D    +        E       N         L  +Y  + E    
Sbjct: 229 KESAEALEI-KMNSDHLTVFCSYFLTSQESNGLGIGNAKTGLPRTHLYPAYLVFIEAN-- 285

Query: 728 YDRKRISTRTVTLNLK----QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
             +  ++    T +L+    Q        R +I    +  R I  +  K  F+   +   
Sbjct: 286 NIQNALTLNNFTESLRQGLAQHKNKYPYTRRRITSGAEKGRYITNVHFK-NFDEFYNEYI 344

Query: 784 IID 786
             +
Sbjct: 345 KSN 347


>gi|254361629|ref|ZP_04977767.1| bacteriophage protein [Mannheimia haemolytica PHL213]
 gi|153093147|gb|EDN74163.1| bacteriophage protein [Mannheimia haemolytica PHL213]
          Length = 622

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 108/344 (31%), Gaps = 34/344 (9%)

Query: 438 LETGQKVKPTKELYITKSTGTPFVEG-EPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALL 495
                +    ++ ++T      + E    +  F   ++      ++        +   L 
Sbjct: 278 YSVNVQRTVNRQNWLTAYIPHSYDENVAETPHFDQWLNFVSDGKQDKAKNILAALYAILT 337

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
                Q F  + G GGSGKS    +     G +   +A   +    R          +  
Sbjct: 338 NRYNWQVFFQVTGKGGSGKSVFAGIATLLAGEKNTASARLENFDDERK---------IAG 388

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L   +++I SE  +    +   +K +TGGD +       + +  +  +    IV N    
Sbjct: 389 LEDKKLIICSEQTKYAG-DGGGLKAITGGDMVRVDPKNKHPF-NARIAAMIMIVNNDPCK 446

Query: 616 VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
               +    RR +   F+K      RD  F  K+         +  L      +     +
Sbjct: 447 WTERNGGIDRRIVNFRFNKRPPENERDPYFMDKITL-EIGGIIRKVLDTFPDPLEAKRAL 505

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES-------------HSLAKSYSE 720
           +  +  L+A E  ++ +D    +  +     EN                    L  +Y  
Sbjct: 506 EEQKESLEALEI-KKQSDPLTDFF-EYLYTTENTDGLYIGTGNTLGHDKIRTHLYPAYLA 563

Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
           + + +   +   +   T  + ++Q     G K +  +++    +
Sbjct: 564 FVKAKNVLE---LGLNTFVVGIEQAVKQHGNKHDFTKRKTNKGQ 604


>gi|211956363|ref|YP_002302432.1| NTPase [Deerpox virus W-1170-84]
 gi|115503158|gb|ABI99076.1| NTPase [Deerpox virus W-1170-84]
          Length = 786

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 53/372 (14%)

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKST 405
           I  S +  L    + +  ++   + N++ S   +   N   +       +V    K K  
Sbjct: 333 IMDSNVIHLTDRGDHIVWINNSWKFNSEESLITKLILNMKDQLPMEYGHDVLCPRKRKVI 392

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEG 463
             +L    + +I +   D+    L  ++GILD+ TG+      +K+   T STG      
Sbjct: 393 ESNLRDMLVDNIET---DTYPCMLPFKNGILDISTGKFYTGPESKKFVCTVSTGFNLDVN 449

Query: 464 -------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                  +  +E   +++        +++  + + R +   L G  K        G   +
Sbjct: 450 IFSDENSKEMKELEKILNDIQPLTEENKKNRELYERTLASCLCGSTKQ-CLTFFFGETAT 508

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L++ A G+ ++   +               NP +  +   R V  SE  +   
Sbjct: 509 GKSTTKRLLQSAIGDLFIETGQTILTD----VMDKGPNPFIANMHLKRSVFCSELPDFAC 564

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I A  IK++T   C+  R  + N  +      +  I  N        D+A  RR 
Sbjct: 565 SGSKKIRADNIKKLT-EPCIVGRPCFSNRINN-KNHASIIIDTNYKPIFDKVDNALMRRI 622

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY-I 667
            +I F      +                  D +   K++   Y  +     +K  + Y I
Sbjct: 623 SLIRFRTHFTQKNGFETARNNSAYSDIKQLDENLDIKIQKNYYRYQFLNLLVKWYQKYHI 682

Query: 668 SKGLDVDIPEVC 679
                   P+  
Sbjct: 683 PTMRLFPTPDAV 694


>gi|62637469|ref|YP_227467.1| NTPase (DNA replication) [Deerpox virus W-848-83]
 gi|115503329|gb|ABI99247.1| NTPase [Deerpox virus W-848-83]
          Length = 786

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 53/372 (14%)

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKST 405
           I  S +  L    + +  ++   + N++ S   +   N   +       +V    K K  
Sbjct: 333 IMDSNVIHLTDRGDHIVWINNSWKFNSEESLITKLILNMKDQLPMEYGHDVLCPRKRKVI 392

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEG 463
             +L    + +I +   D+    L  ++GILD+ TG+      +K+   T STG      
Sbjct: 393 ESNLRDMLVDNIET---DTYPCMLPFKNGILDISTGKFYTGPESKKFVCTVSTGFNLDVN 449

Query: 464 -------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                  +  +E   +++        +++  + + R +   L G  K        G   +
Sbjct: 450 IFSDENSKEMKELEKILNDIQPLTEENKKNRELYERTLASCLCGSTKQ-CLTFFFGETAT 508

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L++ A G+ ++   +               NP +  +   R V  SE  +   
Sbjct: 509 GKSTTKRLLQSAIGDLFIETGQTILTD----VMDKGPNPFIANMHLKRSVFCSELPDFAC 564

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I A  IK++T   C+  R  + N  +      +  I  N        D+A  RR 
Sbjct: 565 SGSKKIRADNIKKLT-EPCIVGRPCFSNRINN-KNHASIIIDTNYKPIFDKVDNALMRRI 622

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY-I 667
            +I F      +                  D +   K++   Y  +     +K  + Y I
Sbjct: 623 SLIRFRTHFTQKNGFETARNNSAYSDIKQLDENLDIKIQKNYYRYQFLNLLVKWYQKYHI 682

Query: 668 SKGLDVDIPEVC 679
                   P+  
Sbjct: 683 PTMRLFPTPDAV 694


>gi|147678840|ref|YP_001213055.1| hypothetical protein PTH_2505 [Pelotomaculum thermopropionicum SI]
 gi|146274937|dbj|BAF60686.1| hypothetical membrane protein [Pelotomaculum thermopropionicum SI]
          Length = 433

 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 56/196 (28%), Gaps = 31/196 (15%)

Query: 8   EQAKQAIHNGFKLIPL----------------RLGDKRP--QRLGKWEEQLLSSEKI--- 46
           + A   +  G+ +IPL                + G K P     G+++ +  S ++I   
Sbjct: 3   DVALFYLALGWSVIPLHSAQGGRCTCGRSGCDKPG-KHPILPAWGEYQTRRASEDEIHDW 61

Query: 47  -DKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
             + P    G V G     L   D+D           +      G P        K    
Sbjct: 62  FARWPDANLGVVTGQVS-GLVVVDLDGPAA------VEAVRDRGGLPPTPTVITGKGYHY 114

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
           + ++     K          LD+   G Y VA      + + Y W        +   P  
Sbjct: 115 YLVHPGQPTKNAAALGGIKGLDVRADGGYVVAPPSVHSSGRVYRWAKGRSPDDLPLAPC- 173

Query: 166 SEEDVEYLFKFFQEIT 181
               +E L    +   
Sbjct: 174 PAWFLEMLANRGRAQA 189


>gi|39937604|ref|NP_949880.1| hypothetical protein RPA4546 [Rhodopseudomonas palustris CGA009]
 gi|39651463|emb|CAE29986.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 770

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 82/249 (32%), Gaps = 16/249 (6%)

Query: 36  WEEQL-LSSEKIDKLP--ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP 92
           W  Q       + +      G G + G     L A D D+ D+  A           G+ 
Sbjct: 64  WLNQPDPDEHDLARWQRMGAGVGIMTGGPLN-LIAVDADTLDQACAGKVMIAGMKHFGST 122

Query: 93  IVRIGQKPKILIPFRMNKEG------IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKK 146
            VRIG+ PK +   R+ +                     +++L  G+ FVA+ IHP TKK
Sbjct: 123 PVRIGRAPKAVYLIRVTEPIQYCRVEFGPLNDEGRRVDRVELLSDGRQFVAHGIHPVTKK 182

Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206
            Y WTTP     V+  P+++ + +       ++I             +   +  + R   
Sbjct: 183 PYVWTTPL--CHVDKLPVVTPQQLAAFMDELRQILPNTGPLVTEGA-TTEVSQASLRGDI 239

Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS-KGKEIARRWSKQGST--YDEE 263
            +   A  +        G+ + +     A+         +  EI   W  +      D +
Sbjct: 240 EKVRAAVAATPNTSAAFGTREAYRDFGYAIKAALPDDEPEAFEIFADWCARWEDGENDPD 299

Query: 264 NFNYKWDTF 272
                W   
Sbjct: 300 IVAADWRRM 308


>gi|254453953|ref|ZP_05067390.1| Bifunctional DNA primase/polymerase, N-terminal domain family
           [Octadecabacter antarcticus 238]
 gi|198268359|gb|EDY92629.1| Bifunctional DNA primase/polymerase, N-terminal domain family
           [Octadecabacter antarcticus 238]
          Length = 516

 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 65/524 (12%), Positives = 130/524 (24%), Gaps = 99/524 (18%)

Query: 27  DKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82
            K+P      ++     +++ K     P    G  C      +   D D+     A   +
Sbjct: 44  QKKPITANGHKDATNDLDQVKKWWTETPTANIGLAC--AASGIVVVDPDTYKPTFAWD-Q 100

Query: 83  DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHP 142
              E           +  +    +    +   K     S    +D+   G Y +      
Sbjct: 101 FRVEKGIDVIKTLTQRSARGGWHYIFAAQADTKYPG--SLAVEVDVKHKG-YIMLAPSK- 156

Query: 143 KTKKEYTWTTPPHRFKVEDTPLLSEED-VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201
              K Y W         +D     +    +   +    I   + +   + +    +    
Sbjct: 157 FEGKVYAWHND------DDIADAPDWIKAKAPVRNVATIAPQVDELTIADVSGPMFVEQA 210

Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD 261
                   I A             + +W+ V M + HET G   G  +  +WS+Q   Y 
Sbjct: 211 RIDKALDAIPA---------AELDYGDWVKVGMGLCHETMGEESGLALWDQWSRQDPRYK 261

Query: 262 EE-NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
              +   +W  F        +    T  S+F       P  LL                 
Sbjct: 262 GGDDLAKRWAKFTVG-----SDNPVTMRSIFEMAKARKPDYLLPD--------------- 301

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
                       W        ++++  L +         +         +  PE      
Sbjct: 302 ------------W-----AAGWVYNKALMEFHQLATGHSIKPGAFNAKFTRMPECYAAE- 343

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLE-AGSIFSITSDLLDSSSRFLGEQDGILDLE 439
                      R  ++      ++ A ++        I    LD    ++          
Sbjct: 344 -----------RTASMLVLRHMRTVANTMFWPCDDRIIGHRGLD----YVNV-------- 380

Query: 440 TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGN 498
                +      +T             Q  L+            +     +       G 
Sbjct: 381 ---FQRHD----VTPVAPMTLDAELAVQTILEHAYSLVADPAEAELLLTFLAYVYQNPGK 433

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
           + +  I + G+ G+GKS  + L+K   G         + + Q  
Sbjct: 434 RVRWAIVLFGIQGNGKSFWVELMKRLMG-HNAGEVAGTTVSQRF 476


>gi|218442838|ref|YP_002381158.1| DNA primase [Cyanothece sp. PCC 7424]
 gi|218175196|gb|ACK73928.1| DNA primase catalytic core domain protein [Cyanothece sp. PCC 7424]
          Length = 1117

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 71/522 (13%), Positives = 154/522 (29%), Gaps = 83/522 (15%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
             +  Y + ++++  +       + K +Y         W     + +  ++      K+ 
Sbjct: 479 SPNSEYTQQVYNVLYRDKRWICVEGKLYY---------WETNHYEHSKDVVE-----KKR 524

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
           + D        NK+ +    +       +    N+  +                     +
Sbjct: 525 IRDFLNTLPKKNKDGEITYPFA------KPNCVNNALEWLKMGFGIDPEL--------VN 570

Query: 426 SRFLGEQDGILDL------ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
              L   +G+L +       T + V    E Y        +    P  +   L+S     
Sbjct: 571 PPGLNCTNGVLKIHWIESTPTWELVPHNPEQYYLYEPVLTYDPDAPQTDCDRLLSAL--D 628

Query: 480 EEVMDYFTRCVGMAL-LGGNKAQR-----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
              +  F R V  +L +   +  +      + ++G+G +GK ++  +++  +G   +   
Sbjct: 629 PAQLTIFLRSVAASLDIQTVRKYKGRLVRALLMKGLGSNGKDSIREVVRLMYGGIGMTGC 688

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLN 592
             SD  Q            L +L  SR+   SE     +I++   +K    GD ++    
Sbjct: 689 TLSDFRQ----YDEGRKFPLSKLGRSRVNWASENASFAKIDSLQSLKAAITGDPLSVENK 744

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA----------NRDAS 642
             +  +E   +   F   N    +    +A   RY V+ F+K               D  
Sbjct: 745 GKDE-NEYDPTAVLFFNCNDIPRLTGSMEAIASRYAVLTFNKTFTIDADPSKGEIEADPR 803

Query: 643 FAQKLE---TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
           F    +   T          L  +   +S G+D    +    A  E +        +  D
Sbjct: 804 FKYDPDFLKTHVLSAFLNRVLSELVNLMSDGIDYRACDR---AWNEIKAENSHLFQFTQD 860

Query: 700 C-CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-----------------N 741
                 E        + K    + +          ST  +                    
Sbjct: 861 VGLSYLEGKEMPVGDIWKLLEGWYQDNGYLSYIESSTGKLKADWTDSPIRGDRLVKGANQ 920

Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
           +  +      K +++     S R+I+G+ + P+    +   N
Sbjct: 921 VTARILELFPKAKRVVLANNS-RVIRGIGIVPSGNGDEGGHN 961


>gi|307710139|ref|ZP_07646583.1| hypothetical protein SMSK564_1413 [Streptococcus mitis SK564]
 gi|307619119|gb|EFN98251.1| hypothetical protein SMSK564_1413 [Streptococcus mitis SK564]
          Length = 513

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/473 (13%), Positives = 143/473 (30%), Gaps = 44/473 (9%)

Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
             +  +    +   D  N    + YK+   +Y        +   +  +I     +K+   
Sbjct: 15  ADIKFETYPENAIQDFDNATPITEYKEEWRIYK------NEVIDSTPHIEPSEKEKMKKR 68

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
              F +     +  L        +++     +                   A+ LE    
Sbjct: 69  KAPFYIMADFLMAHLIVVSIAEIEDTGEGNLFVYNPKEGIYQPAWHIVNKLARRLEPSFR 128

Query: 415 FSITSDLLD------------SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
            +  S++                SR++   + I D   G  +K +  +  T      +  
Sbjct: 129 SNDISEIFSVLSCICKNVSIYQGSRYIALGNCIYDTYYGDGMKYSPSIVFTHKVQVNYNS 188

Query: 463 GEPSQE-----FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
              S           ++  F    E++    + +   + G    +  I + G GG+GK +
Sbjct: 189 EATSPVLGDWSIDSWLTELFNNDAELIHLAWQTILAVIRGYADERI-IWLIGKGGTGKGS 247

Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NA 575
              L+    G     + +  ++             +  +L+G  +VI  +   +  + + 
Sbjct: 248 FQELLINLVGRINTASMKLIELEGKN-------RFATSQLIGKHLVIGDDNPIDKVVTDP 300

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           + +  +   D +T        YS    +       N+ + ++   +A  RR  ++PF   
Sbjct: 301 STMFSLVTHDIVTIEKKGKQAYSA-RLTPVIVQSSNRLIKIQGDKEAIARRTFILPFVSE 359

Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAY-ISKGLDVD--IPEVCLKAKEEERQGTDT 692
                     K       +  ++ LK    Y IS G       P +    KE   +   +
Sbjct: 360 FNKDGYKREIKQVYLKRQDVLEYVLKNALEYDISDGFKDISHHPAI----KEIHGKSMTS 415

Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            + +        ++ +  +  +  +Y ++ E       KR +       LK  
Sbjct: 416 VEQFSSYLFSRVKSTFLPNSFMLWAYEQFCEGNG---LKRETKEAFHKELKDA 465


>gi|17227468|ref|NP_478650.1| hypothetical protein all9003 [Nostoc sp. PCC 7120]
 gi|17134934|dbj|BAB77489.1| all9003 [Nostoc sp. PCC 7120]
          Length = 1097

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/470 (12%), Positives = 126/470 (26%), Gaps = 64/470 (13%)

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
             L        + +  F+          AD K +Y         W     + +   +   
Sbjct: 358 ADLGDEEPDSTFLQKGFNTLYGETKWICADGKLYY---------WHGKGYRYSPDAVERR 408

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
                 + +         KN  S             +       +  + L       +  
Sbjct: 409 R-----ITNYCNSYPVIKKNGDSY-----------VITYPYAKPNKVKELLEWVKLRVEI 452

Query: 420 DLLDSSSRFLGEQDGIL--DLETGQKVK----PTKELYITKSTG-TPFVEGEPSQEFLDL 472
           D    +   +   +G+L  D               + +         +     S     L
Sbjct: 453 DPQLLNPPGVNCTNGVLAIDWSGPIPRPVLEEHDPDKHFFTYEPLVKYDPKADSSHCDRL 512

Query: 473 VSGYFESEEVMDYFTRCVGMALL------GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
           +              R +G +L          +  + +   G+G +GK ++  ++   +G
Sbjct: 513 LE--CLDSPQQQILLRNLGASLDLAEVRKRKGREPKVLLACGLGANGKDSIRQVVSTIYG 570

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGD 585
           +Q + +   +D +            +L  L+ SR+   SE  +   ++    +K    G+
Sbjct: 571 HQGMTSCSLADFV----AYDEGRKFALAALVNSRVNWASENPQTTRLDKIQSLKLFATGN 626

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDASFA 644
            + +    G  + E  ++       N          A   R   + F K    N D +  
Sbjct: 627 VLHSERK-GKDHIEFNSNAIGIFNLNDTPSWYGTIQAILDRIAALIFRKTFKTNPDPNNH 685

Query: 645 QKLETKYT-------------LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
            +L                         + G++A I++G+D    +   +A EE +    
Sbjct: 686 DELLADPRFAYDVDFVQECVAPAFLNKMIAGLQALIAEGIDYSCTQ---QALEEIQAENS 742

Query: 692 TYQAWIDDC-CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
               +  D       N    +  + +    +         +  S   V  
Sbjct: 743 HLFQFCKDTGLGYKANGIVTAFDIWQRLENWYIDNGTLSFEESSNGKVKA 792


>gi|167032204|ref|YP_001667435.1| bifunctional DNA primase/polymerase [Pseudomonas putida GB-1]
 gi|166858692|gb|ABY97099.1| Bifunctional DNA primase/polymerase [Pseudomonas putida GB-1]
          Length = 920

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 103/866 (11%), Positives = 222/866 (25%), Gaps = 150/866 (17%)

Query: 7   KEQAKQAIHN-GFKLIPLRLGDKRP-----QRLGKWEEQLLSSEK-IDKLPACGFGFVCG 59
            + A++ I      L+P+  G K P      + G +   + S+E+     P+   G V G
Sbjct: 10  ADWARRYIQTFNLALVPMDPGTKGPTQEGWNKPGGYFTDVASAEQFWVANPSHNLGVVLG 69

Query: 60  VGEQPLYAFDIDSKD---EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN------- 109
                + + D+D  +        T     + L  +    +G   +  I FR+        
Sbjct: 70  P--SRVCSLDVDDVEFTRLVLQQTHGIDVDALAESYPTSVGNPARFRIMFRVPDGVELKR 127

Query: 110 ----------------------------------KEGIKKKKTTESTQGHLDILGCGQYF 135
                                             +  ++            ++       
Sbjct: 128 HALVWPNKNDPDGIIHKGLMAQVRAAVDAKDEAREAALRMAAEPFKKLTVFELRAGLVQD 187

Query: 136 VAYNI-HPKTKKEYTWTTPPHRFKVEDTP--LLSEEDVEYLFKFFQEITVPLVKDKKSII 192
           V     HP T K YTW   P    + D P  LL+       FK   E   P        +
Sbjct: 188 VLPPSIHPGTGKPYTWRKAPDANGLPDLPGELLAIWQGWEEFKPNGEALCPWRPQPAVPV 247

Query: 193 PSKTWTNNNNRQYTNREITAFLSCFG------EEFYNGSHD----EW------------- 229
                        +   +   +  F              +     +W             
Sbjct: 248 SRPAVAPRPAAARSGEPLPEVIPEFNRIHDIATMIEAHGYKRVGSKWLCPQSSSGLPGVT 307

Query: 230 IPVVMAV--HHETRGSSKGK--EIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285
           I     +  HH +   + G   +    +       D+             +         
Sbjct: 308 ITDDKKLYSHHTSDPLANGHKNDAFDVFCILMHNGDQRAATRAAAQILGIDAKARPPTPP 367

Query: 286 TFTSL-----FYHHGKLIPKGLLASRFSDAYNKAMFSIY---------KKGHFLYTADTK 331
               L          +    G      +D   +   S                +     +
Sbjct: 368 PLGELPRAPSVVEQAEQGEAGAAPDEAADVDARQGDSSTAGSSADGGQGGEGLVLKIAKR 427

Query: 332 AWYKKDK--NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389
            +   +   N   +      K +         + +   + +++   +++  K        
Sbjct: 428 RFALVEGTTNVWDMDKGQSMKRSGFEALVGKPLAKQWMESADKKLVSSEQVKELEQARKM 487

Query: 390 DYRR------QNVEENSKAKSTAQ-----SLEAGSIFSITSDLLDSSSRFLGEQDG-ILD 437
             ++        ++       T +             S+   L D+   +L      ++D
Sbjct: 488 SSKKGGALNLTPLDRYVYIDGTKEAWDREKKRRLPEGSVKMALGDAYQLWLNSPSRRVVD 547

Query: 438 LETGQKVKPTKELYITKSTGTPFVE-----GEPSQEFLDLVSGYFESEEVM--DYFTRCV 490
           ++         +           +       + + E L  +  +  + + +  D+  + +
Sbjct: 548 VDHIVFDPTMTKDPAIYINTFEGLPLGPVRDDAACENLRWLISFLCNHDAVALDWLVKWL 607

Query: 491 GMAL--LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
              L  +G       +    + GSGKS L   I      +Y      + +  N       
Sbjct: 608 AYPLQHMGAKMDTAVLFHSTMEGSGKSLLFADIMGELYGRYGATVGQTQLEGNFNAWQS- 666

Query: 549 ANPSLIRLMGSRIVIISET-NENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
                    G    +  E  + +   N   KIK M  G  +     + N + E+    + 
Sbjct: 667 ---------GKLWAVFEEVVSRDQRYNQVGKIKHMITGKTVRMESKFINGWEEANHMNSV 717

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
           F+      +  +  D   RR +V+ P +     R  + A++L          W L     
Sbjct: 718 FLSNEIMPWPISESD---RRMLVMWPLETLPPERQKAIARELANGGVAALYGWLLDVELG 774

Query: 666 YISKGLDVDIPEV----CLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYS 719
             ++       E        ++   +     +  W     ++G  LW    +  +   + 
Sbjct: 775 EFNQRTRPPETEARQRLVELSRTAWQT---FFYLWRAG--ELGHGLWGCCLTSDVYAMFL 829

Query: 720 EYREQELNYDRKRISTRTVTLNLKQK 745
           E+           +S    +L    K
Sbjct: 830 EWCSHNKE---NSMSHTKFSLMFSAK 852


>gi|325106784|ref|YP_004267852.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM
           5305]
 gi|324967052|gb|ADY57830.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM
           5305]
          Length = 687

 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 81/278 (29%), Gaps = 24/278 (8%)

Query: 4   MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCG 59
           M +  +A +    GF + P   G K+P     ++      E+I++     P    G    
Sbjct: 1   MDFLTEAIKYAEAGFPVFPCVPGSKQPLTSDGFKSATTDEEQIEQWWTETPNANIGIATA 60

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
                L   D+D  D       ++ F  L    +    +       +     G   K + 
Sbjct: 61  ----GLVVVDVDGIDNSWLQGEEELFSQLSLNAVCMTPRNGT--HFWFTQPAGEPVKCSA 114

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKK-----EYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
                ++DI G G Y V    + +  K     +Y W  P       +     E  +  L 
Sbjct: 115 GKVAPNVDIRGDGGYVVVPPSYIEDDKKGIKGKYQWVYPQILGMRSELTPAPEWLMRQLN 174

Query: 175 KFFQEITVP------LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228
              +E+         +   +++   ++   +      +  EI + L     +  +   D 
Sbjct: 175 GSPKELAKDFGGGNIIPSGQRNTALARIAGSVRRIGCSEHEIRSLLRAVNSQRCDPPIDN 234

Query: 229 WIPVVMAVHHETR--GSSKGKEIARRWSKQGSTYDEEN 264
              V        R             W+ Q   +  + 
Sbjct: 235 -TEVDRIARSIARYEPDQTAVSHHEDWAGQDDEHAPQV 271


>gi|27383370|ref|NP_774899.1| hypothetical protein bll8259 [Bradyrhizobium japonicum USDA 110]
 gi|27356545|dbj|BAC53524.1| bll8259 [Bradyrhizobium japonicum USDA 110]
          Length = 223

 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 18/197 (9%)

Query: 11  KQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLP-ACGFGFVCGVGEQPL 65
           +  I  G++ +       +   +G W+    S+ +++      P A   G +CG     L
Sbjct: 13  RSLIAYGYRPV---ACSGKAAVMGNWQRSRWSAAQMEGIARNYPDATNTGLLCGE----L 65

Query: 66  YAFDIDSKDEKTANTFKDTFEILHGT--PIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
              D+D+ D +TA+  +     L G+     R+G+ PK L  FR  +   K+        
Sbjct: 66  VGLDVDTPDAETADAIRAMVMELPGSDRAPYRMGKAPKTLFAFRATEPREKRATGAYLIN 125

Query: 124 G---HLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
           G    ++  G    FVA+  HP T + Y W    P    + + P ++ E ++ L    + 
Sbjct: 126 GAKCQVEAFGERTQFVAFGTHPDTGRPYEWFNGSPAETPLAELPEITPEAIDELLARAEA 185

Query: 180 ITVPLVKDKKSIIPSKT 196
                    K    +  
Sbjct: 186 YFAERGTLIKPASKASD 202


>gi|225575522|ref|ZP_03784132.1| hypothetical protein RUMHYD_03614 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037272|gb|EEG47518.1| hypothetical protein RUMHYD_03614 [Blautia hydrogenotrophica DSM
           10507]
          Length = 616

 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 52/170 (30%), Gaps = 13/170 (7%)

Query: 2   PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFV 57
            V   KE A +  H G  + P++   K P      ++    + +I+      P    G  
Sbjct: 8   AVASMKEWALRYAHLGLAVFPVKEKGKAPATPHGCKDATTDALQIETWWNINPQHNIGIA 67

Query: 58  CGVGEQPLYAFDIDS---KDEKTANTFKDTFEILHGTPI--VRIGQKPKILIPFRMNKEG 112
            G     L   D+D    K +    T K+  +     P   + I         +R     
Sbjct: 68  TGSRSGGLVVIDLDIDEEKGKNGYETLKEWQKEHGDLPETWISITGNGGYHYFYRDTAAN 127

Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT 162
             K          +DI G G Y VA          Y W   P  +++   
Sbjct: 128 KNKVA----LYDGVDIRGEGGYIVAPPSIHPNGHTYEWEQEPGEYEIAQV 173


>gi|284794737|ref|YP_003412090.1| hypothetical protein PhlaMp11 [Phaeoceros laevis]
 gi|254596057|gb|ACT75298.1| hypothetical protein PhlaMp11 [Phaeoceros laevis]
          Length = 316

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 89/248 (35%), Gaps = 17/248 (6%)

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478
             LD  + ++  ++G+L+ ET +    + E ++T S G  +    P+  F   +  +   
Sbjct: 37  PKLD-DTIYILFENGVLNPETKEFFSHSPEFFLTTSIGFNWDPSCPTTVFFKYLDDFTQG 95

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
           +++   +    +   +   NKAQ F+ + G GGSGK+ L +++    G +         +
Sbjct: 96  NKDYKLFIQAFLQSLVKKQNKAQIFLVVIGPGGSGKTILAHVMTALAGKERTGTTGLKRL 155

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
             +              L+   +++ +E  E     A  +K   G D + A   + N   
Sbjct: 156 ETD--------PFENSTLINKHLILANEAEEYHGT-ANNLKAFVGSDMLKASEKHKNDPK 206

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA------QKLETKYT 652
            +       I+ N  L + +P  +  RR  +I        R    +              
Sbjct: 207 TAYYKGQVVIIGNNPLTINDPGGSVLRRVRLIKALNVCQERKDLLSWSAGGWNGDIVPEL 266

Query: 653 LEAKKWFL 660
                W L
Sbjct: 267 PGIMAWAL 274


>gi|155122360|gb|ABT14228.1| hypothetical protein MT325_M674R [Paramecium bursaria chlorella
           virus MT325]
          Length = 653

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/434 (12%), Positives = 129/434 (29%), Gaps = 40/434 (9%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
                 + E  +      +    W +     QN++  S A     +     +       L
Sbjct: 227 MHSYRQVYEVKDFVYSRLRKEVSWAHWVNATQNMKNVSSAVEYLTNCHDSQL-----PNL 281

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKE-------LYITKSTGTPFVEGEPSQEFLD---L 472
                     +G+      +      E       +   K     F   E    F      
Sbjct: 282 HKQRGTYAFMNGVYIASEDRFHCFDTETQPLSDNIVACKFFEQNFDNTEYDDWFDIPTPH 341

Query: 473 VSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAF 525
           +           +V  +    +G  L   N     Q      G+ G+GKS L+  +   F
Sbjct: 342 LDSVMNHQQWDADVQRWLLCLIGRVLYKTNEIDSWQVCPFFVGLAGTGKSLLVLKVIKQF 401

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
                +   +++I +            +       +V   E   +  I  A+ + +  G+
Sbjct: 402 FETVDVGILSNNIERKFG---------ISAFFDKMLVCAPEIRNDLAIEQAEFQSIVSGE 452

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
            ++  + +   + +        +  N+     +   +  RR IV  F + + + D   ++
Sbjct: 453 EISVAIKHQKAFMQ-EWDVPIVLAGNEVPGWADSGGSIQRRLIVFEFKQAVKSGDMKLSE 511

Query: 646 KLETKYTLEAKKWFLKGVK----AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDC 700
           KL T       +   K  +     Y    +   +PE  +  +E   + T+  ++++  + 
Sbjct: 512 KLYT-EMPNIIRKANKAYRYFADKYAEDNIWTVLPEYFISTRETIARSTNFIESFLASEF 570

Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ-KGFIGGIKREKIEKE 759
             +G +          +  +Y      +  K+++         + K  I   +       
Sbjct: 571 LVLGGDNIVPFSDFKSALKDYAATNSLH-MKQLTNEAFGGPFSKYKVTILPQQTLTYNGR 629

Query: 760 WKSKRIIKGLKLKP 773
             +   ++G+ LK 
Sbjct: 630 EMNTIFLRGVTLKS 643


>gi|332360063|gb|EGJ37877.1| virulence-associated protein E [Streptococcus sanguinis SK1056]
          Length = 546

 Score =  111 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 123/340 (36%), Gaps = 30/340 (8%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYFE 478
           + +R+    + + + +TG+    + +  + +     ++              + +   F 
Sbjct: 168 ADNRYTALGNLLYNAKTGETEPFSPQKLVIRKIDCNYIADAKEPNIKGWKVTEWLKNLFG 227

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
             +E+     + +  ++ G +       + G GG+GK T   LIK   G Q V N + ++
Sbjct: 228 GDDELYRMALQIIKASVTGESLKNV-FWLLGKGGTGKGTFQELIKNLVGAQNVANLKINE 286

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNT 596
           + ++R             L+G  +VI  +     +I + +    +T GD +         
Sbjct: 287 VNKSR--------FETSVLVGKTVVIGDDVQVRVKIKDVSTFFSLTTGDPIKIEEKGKTP 338

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           YS      T     N    +    DA  RR+ ++PF    A +  + A K +     E  
Sbjct: 339 YS-VNLKMTIIQSSNGLPIINGDSDAIGRRFRILPFKGGFAGK-VNPAIKDDYICRREVL 396

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG------ENLWEE 710
           ++ L    A  +K      P+   KA  + ++  +   ++  +            N +  
Sbjct: 397 EYLL--CLALNTKTDLKLNPQASQKAVYDFQEEVNEVVSFTRNFFKKNLVSSFLPNSFVW 454

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
              +  S+ EY + E +     +  R +  NL   GF  G
Sbjct: 455 W--VWLSFKEYYQIENDLTPNAL-HREIKNNLPD-GFKPG 490


>gi|155370772|ref|YP_001426306.1| hypothetical protein FR483_N674R [Paramecium bursaria Chlorella
           virus FR483]
 gi|155124092|gb|ABT15959.1| hypothetical protein FR483_N674R [Paramecium bursaria Chlorella
           virus FR483]
          Length = 653

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/434 (12%), Positives = 129/434 (29%), Gaps = 40/434 (9%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
                 + E  +      +    W +     QN++  S A     +     +       L
Sbjct: 227 MHSYRQVYEIKDFVYSRLRKEVSWAHWVNATQNMKNVSSAVEYLTNCHDSQL-----PNL 281

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKE-------LYITKSTGTPFVEGEPSQEFLD---L 472
                     +G+      +      E       +   K     F   E    F      
Sbjct: 282 HKQRGTYAFMNGVYIASEDRFHCFDTETQPLSDNIVACKFFEQNFDNTEYDDWFDIPTPH 341

Query: 473 VSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAF 525
           +           +V  +    +G  L   N     Q      G+ G+GKS L+  +   F
Sbjct: 342 LDSVMNHQQWDADVQRWLLCLIGRVLYKTNEIDSWQVCPFFVGLAGTGKSLLVLKVIKQF 401

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
                +   +++I +            +       +V   E   +  I  A+ + +  G+
Sbjct: 402 FETVDVGILSNNIERKFG---------ISAFFDKMLVCAPEIRNDLAIEQAEFQSIVSGE 452

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
            ++  + +   + +        +  N+     +   +  RR IV  F + + + D   ++
Sbjct: 453 EISVAIKHQKAFMQ-EWDVPIVLAGNEVPGWADSGGSIQRRLIVFEFKQAVKSGDMKLSE 511

Query: 646 KLETKYTLEAKKWFLKGVK----AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDC 700
           KL T       +   K  +     Y    +   +PE  +  +E   + T+  ++++  + 
Sbjct: 512 KLYT-EMPNIIRKANKAYRYFADKYAEDNIWTVLPEYFISTRETIARSTNFIESFLASEF 570

Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ-KGFIGGIKREKIEKE 759
             +G +          +  +Y      +  K+++         + K  I   +       
Sbjct: 571 LVLGGDNIVPFSDFKSALKDYAATNSLH-MKQLTNEAFGGPFSKYKVTILPQQTLTYNGR 629

Query: 760 WKSKRIIKGLKLKP 773
             +   ++G+ LK 
Sbjct: 630 EMNTIFLRGVTLKS 643


>gi|49188486|ref|YP_025316.1| hypothetical protein pIT3_6 [Sulfolobus solfataricus]
 gi|46560102|gb|AAT00521.1| RepA [Sulfolobus solfataricus]
          Length = 915

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 76/241 (31%), Gaps = 14/241 (5%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQ 63
           + A   +  G  ++PL   DK P      ++E+L + E++ K    P+     + G    
Sbjct: 36  DYALYYVSVGLSVVPLVPKDKVPIIEWKPYQERLPTEEEVRKWFRDPSTNIAIITGAVSG 95

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHG--TPIVRIGQKPKILIPFR---MNKEGIKKK-- 116
            L   D D  +  T    K  ++ + G       I +  K    +    ++K   K+   
Sbjct: 96  NLVGIDFDDPNVYTDFADKLFYDPILGDKAYSTWITKTGKGYHIYFRIDVDKGVFKQIFR 155

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
           +  +    H+D+   G YFVA      +   Y +   P   K      L E   E L K 
Sbjct: 156 QKIDIEGKHIDMKAEGGYFVAPPSIHPSGSRYEFLAGPPMNKEPAVLSLKEW--ERLLKL 213

Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
              +       +    P      N   +    +  +               E + +   +
Sbjct: 214 L-GVEPWEGLLRILNAPDSATPGNGKAEQRKEQSASQTPRNVSNCKKLGEKEILRIEELL 272

Query: 237 H 237
            
Sbjct: 273 E 273


>gi|261492854|ref|ZP_05989401.1| alpha replication protein of prophage CP-933I [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261311536|gb|EEY12692.1| alpha replication protein of prophage CP-933I [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 313

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 85/222 (38%), Gaps = 15/222 (6%)

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-EGEPSQEFLDLVSGY-FESEEV 482
           +  F+   +G+L+ +TG+ +   ++ ++       +  E +P   F   ++      ++ 
Sbjct: 102 NLDFIPFLNGVLNRKTGEFLPHNEKYFLRNVLPFDYSLEDKPMPNFEKWINWVSQNDKQK 161

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                    M L    + Q F+ I GVGGSGKS    +     G +   +    D+ +  
Sbjct: 162 KRTILAAFYMILTNSYEWQLFLEITGVGGSGKSIFNEIAIMLVGEENSTSVYLKDLEKAS 221

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESP 601
                       R+     ++I   ++   + + A +K +TG D M     Y N + ++ 
Sbjct: 222 -----------SRIKLLDKILIFAPDQGRIVTDGAVLKGLTGDDVMHFEPKYKNAF-DAR 269

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                 +  N+ +     +    RR ++  F + +  ++  +
Sbjct: 270 VKSIFLMTNNEPIIFTENNGGIARRRVLFHFSEKVPEKNERY 311


>gi|195982544|ref|YP_002122374.1| V13 [Sputnik virophage]
 gi|226732444|sp|B4YNF3|V13_SPTNK RecName: Full=Putative helicase V13
 gi|193245553|gb|ACF16997.1| V13 [Sputnik virophage]
          Length = 779

 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 81/498 (16%), Positives = 142/498 (28%), Gaps = 34/498 (6%)

Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349
           ++      I            +   +FS Y           K +    KN     +  L 
Sbjct: 288 VYEQINYKINLEEKPMEHKLKFEVPIFSDYVDSDSDCQI--KLFELVGKNKFKFCNGVLW 345

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
                   F  S       L    E  N    +     +        E   K        
Sbjct: 346 VFDDQTGMFENSNHVVFRYLKRYKEYFNFIISTDDDGNHKTKNYATDEVLRKKIIGFIKD 405

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP-TKELYITKSTGTPFVEGEPSQE 468
           E      +      S    L  +DGI +  T    +     +         F      + 
Sbjct: 406 ECQDNEWMLKTQTSSLGYLL-FKDGIYNFNTSTFTEGFDPNIVFKFRVPWKF-PKYDKEL 463

Query: 469 FLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
                   F +  +    F   +  AL G  K ++     G   +GKS L+ +++Y FG+
Sbjct: 464 IKKAYKLSFGALFDNPKPFITSLACALAGEIKLKKIYFCPGKSNAGKSYLIKMLQYCFGD 523

Query: 528 QYVINAEASDIMQNRPPEAGKANP-SLIRLMGSRIVIISETNENDEINAAKIKQM-TGGD 585
                   +    ++      A       L  +RIV+ SE +    I+   IK+  + GD
Sbjct: 524 YIGTINGENISYNSKDSRDEAAKYRWAYLLANTRIVMSSEISMKKSIDGNMIKKFASAGD 583

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN------- 638
            +  R  +  +      +FT F + N    +   D+A   R +   F             
Sbjct: 584 KIVGR-KHCESEISFTPNFTIFCMFNDIPEIEPHDEAVSNRLVYHEFPYVFVKEEELNEK 642

Query: 639 -----RDASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
                +D     K +TK          L   K Y+  GL  +      +    + +  D 
Sbjct: 643 PYNKLKDEDLDSKYQTKDFASGFIHILLDAYKNYLENGL-PEFDNEVKEKWTAQTKQIDK 701

Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
             + I++  ++  N+              + +E + D K IS       L +       +
Sbjct: 702 VTSIINEYYEVTNNVK----DFVPLNEILKFKEQHKDLKTISKNRFNEILVE-------E 750

Query: 753 REKIEKEWKSKRIIKGLK 770
            +  E      R   GLK
Sbjct: 751 LKLKEGRSAKLRYWSGLK 768


>gi|220915108|ref|YP_002490414.1| hypothetical protein Mnod_7757 [Methylobacterium nodulans ORS 2060]
 gi|219952962|gb|ACL63348.1| hypothetical protein Mnod_7757 [Methylobacterium nodulans ORS 2060]
          Length = 885

 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 95/354 (26%), Gaps = 53/354 (14%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGF-------GFVC 58
           W++       +G++ I L  G+K P+     +  + ++  +++    G        GF  
Sbjct: 19  WQDYGHTVRKHGWRAIYLEHGEKGPKYADWNKRSVPTAADVERWQRSGLPGQRPNMGFNL 78

Query: 59  GVGEQ-----PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG- 112
           G          + A D D      A    +  E        R+G   K+   F   K   
Sbjct: 79  GPQPGLPEGEHVVAVDADVFTPAAATAVNEILERRLPGAPHRLGNPAKVGTRFVRTKTAD 138

Query: 113 -------------IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
                              T+     +++LG GQ  V +  HP     YTW       ++
Sbjct: 139 GSEPVRRQGRRFIFDGAPDTKENHNRVELLGQGQQSVVHGAHPC-GALYTWPDGISIVEL 197

Query: 160 --EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIP-SKTWTNNNNRQYT---NREITAF 213
             E  PL+  +++  +          +     S    S++  N      T     +    
Sbjct: 198 HPEALPLIPIDELNAIIAECDAAMEAVGGKVVSGATFSRSGRNGGGADLTPLVEADAEVL 257

Query: 214 LSCFGEEFYN-GSHDEWIPVVMAVH-------HETRGSSKGKEIARRWSKQGSTYDEENF 265
           LS  G    +     +W+    A          E R          RW     T D +  
Sbjct: 258 LSGLGSVRNDLSDRGDWVMFTKAFAALCVPALGEGRVVDALLGFTDRWEAAPETGDPDEI 317

Query: 266 NYKWDT------------FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF 307
                             F     G      +    L +    +    +     
Sbjct: 318 LRIIREEEKPAHVGLREVFHAMRKGGAPLPSNFLARLDFARVPVNDNDMPRPEL 371


>gi|92118040|ref|YP_577769.1| hypothetical protein Nham_2527 [Nitrobacter hamburgensis X14]
 gi|91800934|gb|ABE63309.1| hypothetical protein Nham_2527 [Nitrobacter hamburgensis X14]
          Length = 756

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 94/648 (14%), Positives = 180/648 (27%), Gaps = 121/648 (18%)

Query: 2   PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLS-SEKIDKL--PACGFGFVC 58
           P  Q      +    G     +RL  K P  +G+W++      +   +        GF  
Sbjct: 44  PSFQDASLLDEYEQAGHGAKLIRLRGKEP--VGRWKDLPSIGVDGGKRWMAKGGNVGFRM 101

Query: 59  GVGEQPLYAFDID-----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
                     DID       D+  A   +D    L   P V  G      + FR   E  
Sbjct: 102 ---SNTDLVIDIDPRRFPDSDDVLARFLRDF--DLPAHPFVLTG-GGGYHLYFRKPAE-- 153

Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
              +         +    G Y V+    HP T + Y +   P R  + + P++ +  ++ 
Sbjct: 154 DIVRYEHDNYPGFEFRTSGHYVVSAGSVHPDTGRLYRFDDDPLRCSLSEAPMMPDRLLDA 213

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
           + K   E +                  ++     + E  A      +        +W  +
Sbjct: 214 IRKPNIEAS------------------SDEAGALDPETLAEWLVDVDPTEFKDQRKWQDM 255

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDE--ENFNYKWDTFDFEEIGDTAKKRSTF--T 288
           +MA HH T G   G +    WS     Y +  E    +WD  +    G T +    +   
Sbjct: 256 MMACHHATNG--TGVDEFIVWSTSDPEYSDYSEVIRQRWDPLEAIPDGITVRTLIGYLPR 313

Query: 289 SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348
                  +LI +      F D  +                       K ++    W    
Sbjct: 314 EKRREAVELINRTNALDDFPDDLDAEP-------------------DKTRSVWDDW---- 350

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
                    F+    + V     +    ++                 + +        +S
Sbjct: 351 --------VFVADAMQFVRREDGKKYRTDQWKALYAGLNPDGEVLNAIWKGRVPMRKFES 402

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
           L          D        +  +DG+ + + G                           
Sbjct: 403 LVYLPETGEFPDGESGRRYNIWRKDGV-EAKAGDVTP----------------------- 438

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKSTLMNLIKYAFG 526
           FL  ++  F   +  D+    + + L+     +    +   G  G+GKS +  L++   G
Sbjct: 439 FLVHLAYLFPDGKDRDHVLDYLAL-LVQRPADKIHFALLIRGAQGTGKSWIGRLMERIVG 497

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEINAAKIKQMTGGD 585
           ++  +          RP      +     + G+++ +I E      +  A ++K      
Sbjct: 498 SRNTV----------RPSNEEVVSHWTAWMEGAQLAVIEELMTLGRKEVANRLKPAITDP 547

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRRYIVI 630
            +       + YS  P         N                RR++V+
Sbjct: 548 TIRIEEKNCSLYS-IPNCLNFIGFTNHEDALPIEHGD-----RRWLVV 589


>gi|254497903|ref|ZP_05110668.1| putative truncated Phage / plasmid primase P4 [Legionella
           drancourtii LLAP12]
 gi|254352901|gb|EET11671.1| putative truncated Phage / plasmid primase P4 [Legionella
           drancourtii LLAP12]
          Length = 301

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/190 (20%), Positives = 63/190 (33%), Gaps = 19/190 (10%)

Query: 13  AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKI-----DKLPACGFGFVCGVGEQPLYA 67
               G+ + PL    K+   L  W+E   ++  I      K P    G V G     L  
Sbjct: 44  YCDRGWAVHPLN--KKKRPLLKGWQENATTNPNIFMQWLQKWPWANVGIVTGNISN-LLI 100

Query: 68  FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127
            D+D  +   +    D    L  +PIV   +       F           T      ++D
Sbjct: 101 LDVDGGEGINSLRGLD----LPVSPIVVTARGH--HYYFNCPSILSNVSTTRSGLLSNVD 154

Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV-PLVK 186
             G G Y  A     +T  +Y W+ P       D P   E  ++ L    +     P+  
Sbjct: 155 TRGRGGYITAPPSIHETGHQYYWSEPLDG----DLPDAPEWLIQRLLPPVKISYKMPIFI 210

Query: 187 DKKSIIPSKT 196
           D+ +   ++T
Sbjct: 211 DRTTSHYART 220


>gi|260892768|ref|YP_003238865.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
 gi|260864909|gb|ACX52015.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
          Length = 599

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 62/231 (26%), Gaps = 32/231 (13%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPL-RLG--------------DKRP--QRLGKWEEQLLSS 43
           M      E A      G+ +IPL   G               K P      +++E+  + 
Sbjct: 1   MSAKAALEAALSYFGLGWSVIPLHTPGPAGGCSCGRDCDSPGKHPRLASWKEFQERRPTE 60

Query: 44  EKI-----DKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ 98
           E++     +K  +   G V G     +   D+D +D               G P   + +
Sbjct: 61  EELREWWGEKWSSANLGLVTGRVS-GVVVVDLDGEDG------VRAVRERGGLPPTPVVR 113

Query: 99  KPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158
             K    +    E +    T       +D+ G G   V       T + Y W      ++
Sbjct: 114 TGKGWHYYFAYPEVV--VPTRAGVLPGVDVRGDGGLAVLPPSLHPTGRRYEWARGRSPWE 171

Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE 209
           V   P   E  +  +    +      V                  +     
Sbjct: 172 VPLAPC-PEWLLGLVRGRGEGGDDGGVAGADRPRLDPLAVLAGVEEGRRDM 221


>gi|75812724|ref|YP_320341.1| hypothetical protein Ava_C0063 [Anabaena variabilis ATCC 29413]
 gi|75705480|gb|ABA25152.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 332

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 84/313 (26%), Gaps = 56/313 (17%)

Query: 18  FKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP---------------ACGFGFVCG--V 60
           ++++P     KRP     WE+   S +++                     G   VCG   
Sbjct: 19  WRIVPTF--GKRPLGKE-WEKNTYSPKELQTELIRRRLKVWTNNRFITPTGIALVCGFNH 75

Query: 61  GEQPLYAFDIDS---------------------------KDEKTANTFKDTFEILHGTPI 93
            +  L A D D                            +D    +      + L  T  
Sbjct: 76  PQGYLVAIDCDGETSWRQIIQINEHSEPEELNHLTPTETRDTPMESLCDRAQQYLPPTIA 135

Query: 94  VRIGQKPKILIPFRMNKEGIKKKKTTESTQG---HLDILGCGQYFVAYNIHPKTKKEYTW 150
              G+K +    + +        K+ +   G   HL+  G     +         + Y W
Sbjct: 136 FTSGRKYRSQRLYLIPNSKACDVKSRKIKTGKDEHLEFRGKNLASILPPSFHPEGRNYRW 195

Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNR 208
                  +     +  +  +  +    ++     +  +K           +      TN 
Sbjct: 196 LPGCSPSE-RQIEIAPDWVIAQMLVKQEKTRKFNLPKEKYNRRYGVDRYAHLIPSIETNI 254

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           +    L       +   +  WI V MA+      S    +    WS+    Y      YK
Sbjct: 255 QTALVLLEVIHPRFADDYHSWIQVGMALKSV---SPILFKAWDTWSQLSPKYKPGECAYK 311

Query: 269 WDTFDFEEIGDTA 281
           W +F+   I    
Sbjct: 312 WQSFNKTGITIRT 324


>gi|240142182|ref|YP_002966692.1| hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens
           AM1]
 gi|240012126|gb|ACS43351.1| Hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens
           AM1]
          Length = 1438

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 101/260 (38%), Gaps = 31/260 (11%)

Query: 6   WKEQAKQAIHNGFKLIPLRL-GDKR-PQRLG----KWEE---------QLLSSEKIDKL- 49
           + + A++ + NG+ + P  + GD+R P R+     KW E         +  + E+  +  
Sbjct: 42  FGDVARELVANGWAVYPQEIYGDRRLPGRIRREVIKWREDHRLDERLPRPEALEEWIRWC 101

Query: 50  PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRM 108
           PA     V G G    ++ DID  DE  +   +   E + G TP+ R+G  PK+ + FR 
Sbjct: 102 PAHNVALVLGRGSGDAFSVDIDVLDELLSYDIRRLAEDILGATPLRRVGNAPKVALFFRW 161

Query: 109 --NKEGIKKKKTT--------ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT-TPPHRF 157
              +E  K ++T            +  LDIL   +    Y  H +T + ++W    P   
Sbjct: 162 ASPEEAHKLQRTAFKFRDATGRGREQGLDILNYAKSVTIYGRHHRTGRNFSWEADTPLTT 221

Query: 158 KVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217
           + ED P ++ EDV+   +F   + V     + +   +       +            S  
Sbjct: 222 RPEDLPAVTAEDVQ---RFVDAVDVLHPFARGAGFQAGEVVLEFDETTQLTVPRRRRSAD 278

Query: 218 GEEFYNGSHDEWIPVVMAVH 237
           G   +    D  I      +
Sbjct: 279 GAANWVEDSDGRITDGREEY 298


>gi|9633891|ref|NP_051969.1| gp080R [Rabbit fibroma virus]
 gi|6578610|gb|AAF17964.1|AF170722_82 gp080R [Rabbit fibroma virus]
          Length = 786

 Score =  109 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 104/318 (32%), Gaps = 47/318 (14%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTG 457
            + +   ++     +  +T    D     L  ++G+LD+  G       +K+   T STG
Sbjct: 386 PRKRKVIENNLKDMLVDVTET--DVYPCILPFKNGVLDISNGTFYSGHESKDFICTVSTG 443

Query: 458 TP-------FVEGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHI 506
                      + E  +E + +++        +++  + + R +   L G  K       
Sbjct: 444 FNLNMEKFLDDDSEEMKELVSIINDIQPLTEENKQNRELYERTLSSCLCGTTKQ-CITFF 502

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G   +GKST   L+  A GN ++   +               NP +  +   R V  SE
Sbjct: 503 FGETATGKSTTKKLLHSAIGNLFIETGQTILTE----AMDKGPNPFIANMHLKRSVFCSE 558

Query: 567 TNE-----NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
             +     +  I A  IK++T   C+  R  + N  +      +  I  N        D+
Sbjct: 559 LPDFACSTSRRIRADNIKKLT-EPCIVGRQCFSNRINN-KNHASIIIDTNYKPVFDRVDN 616

Query: 622 AWWRRYIVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKG 662
           A  RR  ++ F    A                    D +   K++   Y        ++ 
Sbjct: 617 AIMRRISLVRFRTHFAQTMTKKEMLNKSAYDDVKPLDETLDMKIQKNYYRYAFLNLLVQW 676

Query: 663 VKAYISKGLD-VDIPEVC 679
            + Y    L     PE  
Sbjct: 677 YQKYHVPHLKLFSTPENV 694


>gi|18640166|ref|NP_570240.1| SPV080 putative NTPase [Swinepox virus]
 gi|18448573|gb|AAL69819.1| SPV080 putative NTPase [Swinepox virus]
          Length = 786

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 124/372 (33%), Gaps = 53/372 (14%)

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN-----VEENSKAKST 405
           I  S +  L    + +  +    + + + S   +   +   +  +     +    K K+ 
Sbjct: 333 IMDSNVIHLTDRGDHIVWIKNTWKFSTEESLITKLILSMKEQLPSEYIPDILCPRKRKAI 392

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV-- 461
             +L+   + +I +   D+    L  ++GIL++ TG+      +K+   T STG      
Sbjct: 393 ENNLKDMLVDNIET---DTYPNMLPFKNGILNISTGEFYTGVESKDFICTVSTGFELDME 449

Query: 462 -----EGEPSQEFLDLVSGYFE--SEEV--MDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                E    +E   +++       E     + F + +   L G  K        G   +
Sbjct: 450 KFSDTESTEMKELETILNDIQPLTDENRCNRELFEKILSSCLHGSTKQ-CITFFFGETAT 508

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L++ + G+ ++   +               NP +  +   R V  SE  +   
Sbjct: 509 GKSTTKKLLRSSIGDLFIETGQTILTE----VMDKGPNPFISNMHLKRSVFCSELPDFAC 564

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I A  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 565 SGSKKIRADNIKKLT-ETCIVGRACFSNKINN-RNHATIIIDTNYKPIFDRVDNALMRRI 622

Query: 628 IVIPFDKPIANR------------------DASFAQKLET-KYTLEAKKWFLKGVKAY-I 667
            ++ F                         D +   K++   Y        +K  + Y +
Sbjct: 623 SLVKFRTHFTQPSSNISTRNSTAYDEIKPLDETLDLKIQRNNYRYPFLHLLVKWYRKYHL 682

Query: 668 SKGLDVDIPEVC 679
              +    PE  
Sbjct: 683 PTMVLYPTPEAV 694


>gi|71900789|ref|ZP_00682909.1| phage-related protein [Xylella fastidiosa Ann-1]
 gi|71729466|gb|EAO31577.1| phage-related protein [Xylella fastidiosa Ann-1]
          Length = 557

 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 19/213 (8%)

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
             +           +D  N    + +     + +AD            ++W  T      
Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAD----------RWFVWEGTHWAHGM 402

Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411
                L   + + +    E+      +++  +          +   + S+ +ST ++  A
Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462

Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
              S+  + ++ LD+    L   +G +DL TG       E YIT+     F     + EF
Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEF 522

Query: 470 LDLVSGYFES-----EEVMDYFTRCVGMALLGG 497
           +  ++          + +  +  R  G    G 
Sbjct: 523 ITTLARITCEYGESFKPLCAFLQRWFGYCATGS 555


>gi|310828796|ref|YP_003961153.1| hypothetical protein ELI_3221 [Eubacterium limosum KIST612]
 gi|308740530|gb|ADO38190.1| hypothetical protein ELI_3221 [Eubacterium limosum KIST612]
          Length = 893

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 81/666 (12%), Positives = 166/666 (24%), Gaps = 74/666 (11%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCGVGEQPL 65
           A +    GF + P+    K P      ++      +I+    K P        G     +
Sbjct: 8   ALKFARGGFPVFPVAARGKAPLTENGLKDATTDERQINRWWSKWPDANIAMATG---HGM 64

Query: 66  YAFDIDSKDEKTAN------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
              DID   ++  +       ++  FE L  T +V  G    I   F+ +KE     +  
Sbjct: 65  VVLDIDVDADRGVDGYDSLRLWESEFEALPETWMVLTG-GGGIHYYFKTDKE----IRNR 119

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                 +D+ G G Y +         + Y W      +KV     L E+    +      
Sbjct: 120 TGVLPGVDVRGDGGYVIVPPSIHPNGRAYEWEAVSFDYKVPVP--LPEDLYALMVNNSTR 177

Query: 180 ITVPLVKDKKSIIPSKTWT------NNNNRQYTNREITAFLSCFGEEFYNGSH---DEWI 230
                   ++     +  T      +   +  T+ EI A +    ++  +      +   
Sbjct: 178 DHPKFELPERIPEGERNDTLFRYAASLQGKGRTDFEIMAIVQAANDQCCDVPLKPGEVET 237

Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
            V  A+                         E     +  + +  +     K        
Sbjct: 238 LVNSALR--YDKGEDQAATTAESKDTLKKVAEAEDVERLLSRETFDHIFAIKDPFEREKQ 295

Query: 291 FYHHGKLIPKGLLASRFS-------DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
                       +   F+            A      +         K    K    +  
Sbjct: 296 IAKMKAAARSLKVTQSFNNLLRAHQKERAMAKKQAESQDIQFTDPPIKG--LKCGEWIAE 353

Query: 344 WSLTL---DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400
            S      +K +             +  ++E   + +  ++     F  D + Q +    
Sbjct: 354 DSGIYRCVEKNSGDAFKEYACSHPVI--ITERLCNIDTETEKLTLAFLKDDKWQTLIVER 411

Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
              ++   +   +   I  +  ++ +      D  L+     K+   + +      GT F
Sbjct: 412 STLASRTKVIELADRGIAVNSENAKAFIRYLAD--LESLNLDKIPAYQSIDRMGWIGTAF 469

Query: 461 VEGEPSQEFL---------------------DLVSGYFESEEVMDYFTRC--VGMALL-G 496
                   F                        +        V+            L+  
Sbjct: 470 SPYVKDIRFDGDAKNREIFEAVTEAGDYETWKTLCQSIRQTSVIGKIMLAASFASCLIEP 529

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
             K   F+H+ G   +GK+  + L    +GN  V     S        E   A    I L
Sbjct: 530 MAKLPFFVHLWGGTEAGKTVALMLAASVWGNPAVGKLTRSFNATLVGLERAAAFNYAIPL 589

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
           +   +  I + +     +        G   +  R                F+   +    
Sbjct: 590 VLDELQTIKD-SYGGGFDKIVYNLCEGQGKI--RGLKAGGIERMNRWKNVFLSSGEQPLS 646

Query: 617 RNPDDA 622
            +    
Sbjct: 647 SDTSGG 652


>gi|124378233|ref|YP_001029427.1| GfV-D1-ORF1 [Glypta fumiferanae ichnovirus]
 gi|124270640|dbj|BAF45563.1| GfV-D1-ORF1 [Glypta fumiferanae ichnovirus]
          Length = 833

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/442 (13%), Positives = 124/442 (28%), Gaps = 69/442 (15%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
           R      +A+F ++         +   +Y+     +Y                       
Sbjct: 378 RSEAELAQALFDVF--------PNISNYYRYSHKRIYHCDEK------------------ 411

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS----DL 421
             ++     + +   +  +         +    N+        +    +  I      + 
Sbjct: 412 -TNIWNSLTNYDFYRQIRQKLERKIQLTEAELINNSTTDIVLKIRDIIVRKIEDVNFTEQ 470

Query: 422 LDSSSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFVEGEPSQE---FLDLVSGY 476
           LDS S      +  +D+            E  I  +TG  +  G   +         +  
Sbjct: 471 LDSVSNLFVTDNKAIDMSIIPPVIRSIKCEDLIKTTTGWTYDPGLSCKYKKSVKSYFNKL 530

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQYVINAE 534
                   +F   +   L G    +  + +     G SGKSTL++L++  FGN YV ++ 
Sbjct: 531 LPKPCEQRWFLSFIARMLNGKRCNEPCVILTDNRGGKSGKSTLIHLLRAVFGNYYVNDST 590

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
                      + + N         R++++    +N+ +N   IK     D       Y 
Sbjct: 591 IVPRRTKYFIRSSQEN--------KRLLVVDGLEKNETLNCDFIKSTINYD-------YS 635

Query: 595 NTYSESPASFTPFIVPNK-HLFVRNPDDAWWRRYIVIPFDKPI-------------ANRD 640
           N  S  P +    IV N     +   D+ + +  +  P                   +  
Sbjct: 636 NRRSIFPVNVGLIIVSNTGKPILDTSDEDFLKMIVTCPMRSRFVSKKKMAHMKKHGEDIT 695

Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
            ++      ++     +  +        KG    +P+  +          D Y  W+D  
Sbjct: 696 DTYIADNSLRHQFSEWRSAVLDFLLEFYKGSLPPVPDSMIDCNNSNFHDNDFYVNWLDTH 755

Query: 701 --CDIGENLWEESHSLAKSYSE 720
                    +  +  + K   E
Sbjct: 756 ISVVKNSGSFVTALQIVKQMKE 777


>gi|124378265|ref|YP_001029444.1| GfV-D4-ORF1 [Glypta fumiferanae ichnovirus]
 gi|124270649|dbj|BAF45569.1| GfV-D4-ORF1 [Glypta fumiferanae ichnovirus]
          Length = 849

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/442 (13%), Positives = 125/442 (28%), Gaps = 69/442 (15%)

Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
           R      +A+F ++         +   +Y+     +Y                       
Sbjct: 395 RSEAELAQALFDVF--------PNISNYYRYSHKRIYHCDEK------------------ 428

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS----DL 421
             ++     +++   +  +         +    N+        +    +  I      + 
Sbjct: 429 -TNIWNSLTNDDFYRQIRQKLERKIQLTEAELINNSTTDIVLKIRDIIVRKIEDVNFTEQ 487

Query: 422 LDSSSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFVEGEPSQE---FLDLVSGY 476
           LDS S      +  +D+            E  I  +TG  +  G   +         +  
Sbjct: 488 LDSVSNLFVTDNKAIDMSIIPPVIRSIKCEDLIKTTTGWTYDPGLSCKYKKSVKSYFNKL 547

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQYVINAE 534
                   +F   +   L G    +  + +     G SGKSTL++L++  FGN YV ++ 
Sbjct: 548 LPKPCEQRWFLSFIARMLNGKRCNEPCVILTDNRGGKSGKSTLIHLLRAVFGNYYVNDST 607

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
                      + + N         R++++    +N+ +N   IK     D       Y 
Sbjct: 608 IVPRRTKYFIRSSQEN--------KRLLVVDGLEKNETLNCDFIKSTINYD-------YS 652

Query: 595 NTYSESPASFTPFIVPNK-HLFVRNPDDAWWRRYIVIPFDKPI-------------ANRD 640
           N  S  P +    IV N     +   D+ + +  +  P                   +  
Sbjct: 653 NRRSIFPVNVGLIIVSNTGKPILDTSDEDFLKMIVTCPMRSRFVSKKKMAHMKKHGEDIT 712

Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
            ++      ++     +  +        KG    +P+  +          D Y  W+D  
Sbjct: 713 DTYIADNSLRHQFSEWRSAVLDFLLEFYKGSLPPVPDSMIDCNNSNFHDNDFYVNWLDTH 772

Query: 701 --CDIGENLWEESHSLAKSYSE 720
                    +  +  + K   E
Sbjct: 773 ISVVKNSGSFVTALQIVKQMKE 794


>gi|225194770|gb|ACN81893.1| DNA-dependent NTPase [Skunkpox virus]
          Length = 785

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + NN+     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNNEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDEAKKYTCTVSTGFRFDD 448

Query: 463 G---EPSQEFLDL---VSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
               E S E  +L   ++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEESPEMEELVNIINDIQPLTDENKKNRELYEKTLSSCLCGTTK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDNKIQNNRYRFAFLYLLVKWYRKY 679


>gi|148912960|ref|YP_001293274.1| hypothetical protein GTPV_gp079 [Goatpox virus Pellor]
          Length = 786

 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 123/372 (33%), Gaps = 53/372 (14%)

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN-----VEENSKAKST 405
           I  S +  L    + V  +    + N       +   N   +  +     +    K K  
Sbjct: 333 IMDSNVIHLTERGDHVVWIKNSWKFNTDEPLITKLILNMKDQLPSEYIPDILCPRKRKVI 392

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV-- 461
             +L+   + +I +   D+    L  ++G+LD+ +G+  K   +K+   T STG      
Sbjct: 393 ENNLKDMLVDTIET---DTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIE 449

Query: 462 -----EGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                + +  ++  ++++        ++E  + + R +   L G  K        G   +
Sbjct: 450 KYLNEDSQEMKDLNNIINDIQPLTEENKENRELYERTLSSCLCGSTKQ-CLTFFFGETAT 508

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L++ + G  ++   +               NP +  +   R V  SE  +   
Sbjct: 509 GKSTTKKLLQSSIGELFIETGQTILTD----IIDKGPNPFISNMHLKRSVFCSELPDFSC 564

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I A  IK++T   C+  R  + N         +  I  N        D+A  RR 
Sbjct: 565 SGSKKIKADNIKKLT-EPCIVGRPCFSNRIHN-KNHASIIIDTNYKPVFDKVDNALMRRI 622

Query: 628 IVIPFDKPI------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY-I 667
            ++ F                         D +   K++  Y         +K  + Y I
Sbjct: 623 ALVKFRTHFSQYSNSDSVKNNAAYDDVKPLDENLDMKIQKNYFRYAFLNLLVKWYQRYHI 682

Query: 668 SKGLDVDIPEVC 679
                   PE  
Sbjct: 683 PTMRLFPTPEAI 694


>gi|22595776|gb|AAN02808.1| putative NTPase [lumpy skin disease virus]
          Length = 786

 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/295 (18%), Positives = 101/295 (34%), Gaps = 45/295 (15%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV-------EGEPSQEFLDLV 473
           D+    L  ++G+LD+ +G+  K   +K+   T STG           + +  ++  +++
Sbjct: 407 DTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIEQYLNEDSQEMKDLNNII 466

Query: 474 SGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
           +        ++E  + + R +   L G  K        G   +GKST   L++ + G  +
Sbjct: 467 NDIQPLTEENKENRELYERTLSSCLCGSTKQ-CLTFFFGETATGKSTTKKLLQSSIGELF 525

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGG 584
           +   +               NP +  +   R V  SE  +     + +I A  IK++T  
Sbjct: 526 IETGQTILTD----IIDKGPNPFISNMHLKRSVFCSELPDFSCSGSKKIKADNIKKLT-E 580

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-------- 636
            C+  R  + N         +  I  N        D+A  RR  ++ F            
Sbjct: 581 PCIVGRPCFSNRIHN-KNHASIIIDTNYKPVFDKVDNALMRRIALVKFRTHFSQYSNSDS 639

Query: 637 ----------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY-ISKGLDVDIPEVC 679
                        D +   K++ KY         +K  + Y I        PE  
Sbjct: 640 VKNNAAYDDVKPLDENLDMKIQKKYFRYAFLNLLVKWYQKYHIPTMRLFPTPEAI 694


>gi|301134606|gb|ADK63720.1| m80R [Myxoma virus]
          Length = 786

 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 104/318 (32%), Gaps = 47/318 (14%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTG 457
            + +   ++     +  +T    D     L  ++G+LD+  G       +K+   T STG
Sbjct: 386 PRKRKVIENNLKDMLVDVTET--DVHPCILPFRNGVLDISNGTFYTGHDSKDFICTVSTG 443

Query: 458 TP-------FVEGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHI 506
                      + E  +E + +++        +++  + + R +   L G  K       
Sbjct: 444 FNLNMEKFLDNDSEEMKELVSIINDIQPLTEENKQNRELYERTLASCLCGTTKQ-CITFF 502

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G   +GKST   L+  A G+ ++   +               NP +  +   R V  SE
Sbjct: 503 FGETATGKSTTKKLLHSAIGSLFIETGQTILTE----VMDKGPNPFIANMHLKRSVFCSE 558

Query: 567 TNE-----NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
             +     +  I A  IK++T   C+  R  + N  +      +  I  N        D+
Sbjct: 559 LPDFACSTSKRIRADNIKKLT-EPCIVGRQCFSNRINN-KNHASIIIDTNYKPVFDRVDN 616

Query: 622 AWWRRYIVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKG 662
           A  RR  ++ F    A                    D +   K++   Y        ++ 
Sbjct: 617 ALMRRISLVRFRTHFAQTATNKEMLNKAAYDDVKPLDETLDMKIQKNYYRYAFLNLLVQW 676

Query: 663 VKAYISKGLD-VDIPEVC 679
            + Y    L     PE  
Sbjct: 677 YQKYHVPHLKLFSTPENV 694


>gi|9633716|ref|NP_051794.1| m80R [Myxoma virus]
 gi|6523935|gb|AAF14968.1|AF170726_84 m80R [Myxoma virus]
 gi|170664546|gb|ACB28703.1| m80R [Myxoma virus]
 gi|170664719|gb|ACB28875.1| m80R [recombinant virus 6918VP60-T2]
          Length = 786

 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 104/318 (32%), Gaps = 47/318 (14%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTG 457
            + +   ++     +  +T    D     L  ++G+LD+  G       +K+   T STG
Sbjct: 386 PRKRKVIENNLKDMLVDVTET--DVHPCILPFRNGVLDISNGTFYTGHDSKDFICTVSTG 443

Query: 458 TP-------FVEGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHI 506
                      + E  +E + +++        +++  + + R +   L G  K       
Sbjct: 444 FNLNMEKFLDNDSEEMKELVSIINDIQPLTEENKQNRELYERTLASCLCGTTKQ-CITFF 502

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G   +GKST   L+  A G+ ++   +               NP +  +   R V  SE
Sbjct: 503 FGETATGKSTTKKLLHSAIGSLFIETGQTILTE----VMDKGPNPFIANMHLKRSVFCSE 558

Query: 567 TNE-----NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
             +     +  I A  IK++T   C+  R  + N  +      +  I  N        D+
Sbjct: 559 LPDFACSTSKRIRADNIKKLT-EPCIVGRQCFSNRINN-KNHASIIIDTNYKPVFDRVDN 616

Query: 622 AWWRRYIVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKG 662
           A  RR  ++ F    A                    D +   K++   Y        ++ 
Sbjct: 617 ALMRRISLVRFRTHFAQTATNKEMLNKAAYDDVKPLDETLDMKIQKNYYRYAFLNLLVQW 676

Query: 663 VKAYISKGLD-VDIPEVC 679
            + Y    L     PE  
Sbjct: 677 YQKYHVPHLKLFSTPENV 694


>gi|40556020|ref|NP_955105.1| CNPV082 NTPase, DNA replication [Canarypox virus]
 gi|40233845|gb|AAR83428.1| CNPV082 NTPase, DNA replication [Canarypox virus]
          Length = 794

 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 22/231 (9%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFES- 479
           D     L   +G+ D++     +    K    T STG  + + E     ++ +S   +  
Sbjct: 410 DIYPEKLQFTNGVYDIKDSVFYQGNDAKNFVCTVSTGYKYEDKEDINGVIEELSKILDDI 469

Query: 480 -------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
                   E  + + + +   L+G  K        G   +GKST   L+K    N ++  
Sbjct: 470 QPKTKENSENRELYEQILSSCLMGTTKQ-CIFFFYGETATGKSTTKKLLKSVMHNMFLET 528

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCM 587
            +     Q         NP +  +   R V  SE  +     + +I +  IK++T   C+
Sbjct: 529 GQVILTEQ----MDKGPNPFIANMHLKRAVFCSELPDFSCNTSKKIRSDNIKKLT-EPCI 583

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
             R  Y N  +      T  I  N        D+A  RR  ++ F     N
Sbjct: 584 VGRPCYSNKINN-RNHATIIIDTNYKPVFDKVDNAIMRRIALVNFKTHFTN 633


>gi|12085066|ref|NP_073468.1| 83R protein [Yaba-like disease virus]
 gi|157939706|ref|YP_001497078.1| NTPase [Tanapox virus]
 gi|12056242|emb|CAC21321.1| 83R protein [Yaba-like disease virus]
 gi|146746422|gb|ABQ43558.1| NTPase [Tanapox virus]
 gi|146746578|gb|ABQ43713.1| NTPase [Tanapox virus]
          Length = 786

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 114/381 (29%), Gaps = 67/381 (17%)

Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396
           ++ +  +W     K           +      L  E   +               R++ V
Sbjct: 343 ERGDHIVWIKNSWKFNNEEPVITKLVLNMKDQLPSEYTPD-----------ILCPRKRKV 391

Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
            EN+       ++E            D+    L  ++G+LD+ +G+     +      + 
Sbjct: 392 IENNLKDMLVDTVET-----------DTYPHILPFKNGVLDITSGKFYHGEESKKFICTA 440

Query: 457 GTPFVEGEP---------SQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRF 503
            T F               +E   ++         + +  + + R +   L G  K    
Sbjct: 441 STDFNFEMDKFLNDTSIEMKELECIIDDIQPKTCENLKNRELYERTLSSCLCGSTKQ-CI 499

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
               G   +GKST   L++ A G+ ++   +               NP +  +   R V 
Sbjct: 500 TFFFGETATGKSTTKRLLQSAIGDLFIETGQTILTD----LMDKGPNPFISNMHLKRSVF 555

Query: 564 ISETNE-----NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
            SE  +     + +I A  +K++T   C+  R  + N  +      +  I  N       
Sbjct: 556 CSELPDFACSGSKKIRADNVKKLT-EPCIVGRSCFSNKINN-RNHASIIIDTNYKPIFDR 613

Query: 619 PDDAWWRRYIVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWF 659
            D A  RR  ++ F    +                    D +   K++ K Y        
Sbjct: 614 VDCALMRRVSLVKFRTHFSQPSSAEAAKSNSAYDDVKPLDENLDMKIQKKYYRFAFLNML 673

Query: 660 LKGVKAYISKGLD-VDIPEVC 679
           +K  + Y    +     P+  
Sbjct: 674 VKWYQKYHVPTMRLFPTPDAV 694


>gi|295696541|ref|YP_003589779.1| Bifunctional DNA primase/polymerase [Bacillus tusciae DSM 2912]
 gi|295412143|gb|ADG06635.1| Bifunctional DNA primase/polymerase [Bacillus tusciae DSM 2912]
          Length = 269

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 63/216 (29%), Gaps = 19/216 (8%)

Query: 12  QAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLY 66
             I      IPL    KRP  +   ++ +  + E++ +     P C +  V G     + 
Sbjct: 20  AYIKRDLSTIPLEPKGKRPLIKWEPFQHRRPTPEQVMRWAQEHPGCNWAIVTGAVS-GVV 78

Query: 67  AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
             D+D    + A   K       G P+V+ G+     + FR     ++           +
Sbjct: 79  VLDLD--SPEAAQEIKQRGVEDVG-PVVKTGK--GWHLYFRHPGHPVQN---AVKLLPGV 130

Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVK 186
           D+ G G Y  A      +   Y W       ++E          E++ +   +   P   
Sbjct: 131 DVRGDGGYVAAPPSVHPSGAVYRWAKGRSILEIE-----PPPLPEWVEELLNQPQEPAGG 185

Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222
               +                 E     +      +
Sbjct: 186 VSIQLEGIGDDIERIALGVGQGERNQATARLAGYLF 221


>gi|21492536|ref|NP_659655.1| NTPase; DNA replication [Sheeppox virus]
          Length = 786

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 123/372 (33%), Gaps = 53/372 (14%)

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN-----VEENSKAKST 405
           I  S +  L    + V  +    + N       +   N   +  +     +    K K  
Sbjct: 333 IMDSNVIHLTERGDHVVWIKNSWKFNTDEPLITKLILNMKDQLPSEYIPDILCPRKRKVI 392

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV-- 461
             +L+   + +I +   D+    L  ++G+LD+ +G+  K   +K+   T STG      
Sbjct: 393 ENNLKDMLVDTIET---DTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIE 449

Query: 462 -----EGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                + +  ++  ++++        ++E  + + R +   L G  K        G   +
Sbjct: 450 KYLNEDSQEMKDLNNIINDIQPLTEENKENRELYERTLSSCLCGSTKQ-CLTFFFGETAT 508

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L++ + G  ++   +               NP +  +   R V  SE  +   
Sbjct: 509 GKSTTKKLLQSSIGELFIETGQTILTD----IIDKGPNPFISNMHLKRSVFCSELPDFSC 564

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I A  IK++T   C+  R  + N         +  I  N        D+A  RR 
Sbjct: 565 SGSKKIKADNIKKLT-EPCIVGRPCFSNRIHN-KNHASIIIDTNYKPVFDKVDNALMRRI 622

Query: 628 IVIPFDKPI------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY-I 667
            ++ F                         D +   K++  Y         +K  + Y I
Sbjct: 623 ALVKFRTHFSQYSNSDSVKNNAAYDDVKPLDENLDMKIQKNYFRYAFLNLLVKWYQKYHI 682

Query: 668 SKGLDVDIPEVC 679
                   PE  
Sbjct: 683 PTMRLFPTPEAI 694


>gi|44971462|gb|AAS49812.1| RPXV099 [Rabbitpox virus]
          Length = 785

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYMCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|225194752|gb|ACN81884.1| DNA-dependent NTPase [Raccoonpox virus]
          Length = 785

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTISTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E L++++        +++  + + + +   L G  K        G   +
Sbjct: 449 KKFVEDSPEMEELLNIINDIQPLTEENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  K Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDNVKLLDEGLDSKIQNNRYRFAFLYLLVKWYKQY 679


>gi|15150522|ref|NP_150517.1| LSDV083 putative NTPase [Lumpy skin disease virus NI-2490]
 gi|15149094|gb|AAK85044.1| LSDV083 putative NTPase [Lumpy skin disease virus NI-2490]
 gi|22595618|gb|AAN02651.1| putative NTPase [Lumpy skin disease virus NW-LW]
          Length = 786

 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 100/295 (33%), Gaps = 45/295 (15%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV-------EGEPSQEFLDLV 473
           D+    L  ++G+LD+ +G+  K   +K+   T STG           + +  ++  +++
Sbjct: 407 DTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIEQYLNEDSQEMKDLNNII 466

Query: 474 SGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
           +        ++E  + + R +   L G  K        G   +GKST   L++ + G  +
Sbjct: 467 NDIQPLTEENKENRELYERTLSSCLCGSTKQ-CLTFFFGETATGKSTTKKLLQSSIGELF 525

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGG 584
           +   +               NP +  +   R V  SE  +     + +I A  IK++T  
Sbjct: 526 IETGQTILTD----IIDKGPNPFISNMHLKRSVFCSELPDFSCSGSKKIKADNIKKLT-E 580

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-------- 636
            C+  R  + N         +  I  N        D+A  RR  ++ F            
Sbjct: 581 PCIVGRPCFSNRIHN-KNHASIIIDTNYKPVFDKVDNALMRRIALVKFRTHFSQYSNSDS 639

Query: 637 ----------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY-ISKGLDVDIPEVC 679
                        D +   K++  Y         +K  + Y I        PE  
Sbjct: 640 VKNNAAYDDVKPLDENLDMKIQKNYFRYAFLNLLVKWYQKYHIPTMRLFPTPEAI 694


>gi|225194734|gb|ACN81875.1| DNA-dependent NTPase [Volepox virus]
          Length = 785

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + NN+     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNNEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDEAKKYTCTVSTGFRFDD 448

Query: 463 ------GEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 VKFIEGSPEMEELVNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDNKIQNNRYRFAFLYLLVKWYRKY 679


>gi|147677729|ref|YP_001211944.1| hypothetical protein PTH_1394 [Pelotomaculum thermopropionicum SI]
 gi|146273826|dbj|BAF59575.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 645

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 69/210 (32%), Gaps = 33/210 (15%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPL----------------RLGDKRP--QRLGKWEEQLLS 42
           M   ++       I   F +IPL                + G K P       ++ +  +
Sbjct: 1   MNRSKYSVPQNDDIFQKFSVIPLHSLKNGKCTCGKNDCTKPG-KHPCIPEWRVYQRRRPT 59

Query: 43  SEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ 98
            +++ +     P C +  V G     +   D+D  + + +       + +  T +VR G+
Sbjct: 60  RDEVTQWRGKYPGCNWAVVTGKVS-EVVVLDMDGPEGEASLR----GKHIPPTWMVRTGK 114

Query: 99  KPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158
                I F+     ++ +         +DI G G Y VA      + K+Y W        
Sbjct: 115 --GRHIYFQWPGFPVECRTGI---LPGVDIRGDGGYVVAPGSVHVSGKKYGWVDGLSPAD 169

Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
           + +        VE L +     +  +   +
Sbjct: 170 MPEPAEAPAWLVELLKRPGGNSSSKIDPVR 199


>gi|56713483|gb|AAW23523.1| putative NTPase [Vaccinia virus]
 gi|56713767|gb|AAW23805.1| putative NTPase [Vaccinia virus]
          Length = 785

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|66275907|ref|YP_232992.1| NTPase [Vaccinia virus]
 gi|137602|sp|P04305|VD05_VACCV RecName: Full=Protein D5
 gi|335647|gb|AAA48259.1| ORF5 cds [Vaccinia virus]
 gi|893340|gb|AAA69629.1| unknown protein [Vaccinia virus]
 gi|29692216|gb|AAO89389.1| NTPase interacts with A20R [Vaccinia virus WR]
 gi|88854163|gb|ABD52581.1| nucleic acid-independent nucleoside triphosphatase [Vaccinia virus]
          Length = 785

 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|37551555|gb|AAQ93207.1| NTPase [Vaccinia virus]
 gi|38348977|gb|AAR17953.1| NTPase [Vaccinia virus]
 gi|88900728|gb|ABD57640.1| VACV106 [Vaccinia virus]
 gi|90819770|gb|ABD98580.1| VACV-DUKE-118 [Vaccinia virus]
          Length = 785

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDNAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|167412610|gb|ABZ80044.1| NTPase interacts with A20R [Vaccinia virus GLV-1h68]
          Length = 785

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  K Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNIYRFAFLYLLVKWYKKY 679


>gi|30519484|emb|CAD90659.1| E5R protein [Cowpox virus]
          Length = 785

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|320166803|gb|EFW43702.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 763

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/472 (13%), Positives = 141/472 (29%), Gaps = 55/472 (11%)

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
               + + +  +E        ++              ++T REI   L       + G  
Sbjct: 280 PLQCDAIDEALEEQERSNKAAEERRKLQ---LATPVNEHTVREIREILMEHLGPEHYGQR 336

Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQG--STYDEENFNYKWDTFDFEEIGDTAKK- 283
             W  +V AV         G ++AR +S +     YD  +F   W++   +         
Sbjct: 337 KHWFGIVAAVK--CVLGEAGYDLAREFSARAGDPQYDN-DFPKNWESISPDHNWSMESLY 393

Query: 284 ----------RSTFTSLFYHHGKLIPKGLLASRFS-------DAYNKAMFSIYKKGHFLY 326
                     R           +   +  +            DA    +  ++       
Sbjct: 394 KYVKGGSSALRCNQDFRIDSDEEEENEKPMQFSEDEPEFGNEDADALILKDLFAGNVISV 453

Query: 327 TAD-TKAWYKKDKNNVYIWSLTLDKITASI-MNFLVSMKEDVFDLSEEPEDN--NKNSKS 382
           ++     +Y  +   V   + T   +   + +     + + +  + ++ + +   K  + 
Sbjct: 454 SSKSDDNFYIYNPRKVLWETATNADMNDLVGVELKKYLAKRIEKMEQQIQSSVSQKKKEL 513

Query: 383 PRFWFNTDYRRQNVEEN------------------SKAKSTAQSLEAGSIFSITSDLLDS 424
                 +  +   V+ N                    A      L++  + +     LD 
Sbjct: 514 SPKLKKSAVKAFGVDRNLNSTRTQLKSAYKQAGGSRHANGIIVKLKSKLLDASFKAKLDK 573

Query: 425 SSRFLGEQ-DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
               L    + +L+L TG   +  +E Y T +    +  G          S       E+
Sbjct: 574 DPYSLAIAGNKMLNLLTGVTRQRVREDYCTFALDVDYTPGSDLSIAQSFFSDVMCGDAEM 633

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
           ++YF R +G  LLG N A       G G +GKS ++ +++     Q+        +   +
Sbjct: 634 IEYFQRVMGYCLLGNNAAHLMFFFLGRGSNGKSLILQILEAILKGQFFTWMVQGIMKAGK 693

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
             E        +    +  +  ++   +  I A  +K+   GD       + 
Sbjct: 694 KFEHQMPK---LVAEVTTAMRYADDPVHQWIAAQVVKK--AGDWYVDEEKHQ 740


>gi|160857992|emb|CAM58280.1| DNA-dependent ATPase [Vaccinia virus Ankara]
          Length = 785

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|111184297|gb|ABH08217.1| HSPV111 [Horsepox virus]
          Length = 785

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDNAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|113195289|ref|YP_717419.1| NTPase [Taterapox virus]
 gi|90660565|gb|ABD97678.1| NTPase [Taterapox virus]
          Length = 785

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|323098511|gb|ADX22749.1| NTPase [Monkeypox virus]
 gi|323098708|gb|ADX22945.1| NTPase [Monkeypox virus]
          Length = 785

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVENSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  K Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679


>gi|17975015|ref|NP_536529.1| E5R [Monkeypox virus Zaire-96-I-16]
 gi|17529882|gb|AAL40560.1|AF380138_102 E5R [Monkeypox virus Zaire-96-I-16]
 gi|68448979|gb|AAY97101.1| NTPase [Monkeypox virus]
 gi|68449181|gb|AAY97302.1| NTPase [Monkeypox virus]
 gi|300872725|gb|ADK39127.1| NTPase [Monkeypox virus]
          Length = 785

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVENSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  K Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679


>gi|260893832|ref|YP_003239929.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
 gi|260865973|gb|ACX53079.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
          Length = 283

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 65/237 (27%), Gaps = 34/237 (14%)

Query: 8   EQAKQAIHNGFKLIPLR----------------LGDKRPQRLGKWEEQLLSSEKI----D 47
             A++    G+ ++PL                  G K P      +E    SE I     
Sbjct: 10  YYAERF---GWAVLPLHSIAGGRCTCGRVDCPSPG-KHPLTRHGVKEASKDSEAIAAWWR 65

Query: 48  KLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR 107
           + P    G   G      +  D+D  + + +              + +I       + FR
Sbjct: 66  RWPWANIGIATGKAS-GFFVLDVDGPEGEDSLYELVRRHGELPETVEQITGSGGRHLLFR 124

Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
           M +   +           LD+ G G Y VA        + Y W       +V        
Sbjct: 125 MPEG--RAIGNKVRLAPGLDVRGEGGYIVAAPSIHAGGRRYEWEFSSRPGEV-QIAEAPG 181

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
             +E L    + +  P+   ++        +        N  I A       +  + 
Sbjct: 182 WLLELLAGPAEGLGRPVEVWRQ------LVSEGVEEGQRNNSIAALAGHLLRKRVDP 232


>gi|17158691|ref|NP_478202.1| hypothetical protein alr7555 [Nostoc sp. PCC 7120]
 gi|17134640|dbj|BAB77198.1| alr7555 [Nostoc sp. PCC 7120]
          Length = 332

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 85/313 (27%), Gaps = 56/313 (17%)

Query: 18  FKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP---------------ACGFGFVCG--V 60
           ++++P     KRP     WE+   S +++                     G   VCG   
Sbjct: 19  WRIVPTF--GKRPLGKE-WEKNTYSPKELQTELVRRRLKFWTNNRLITPTGVALVCGFNH 75

Query: 61  GEQPLYAFDIDS---------------------------KDEKTANTFKDTFEILHGTPI 93
            +  L A D D                            +D    +      + L  T  
Sbjct: 76  PQGYLVAIDCDGETSWRHIIQINEHLEPKELNQLTPAETRDTPMESLHDRAQKYLPPTIA 135

Query: 94  VRIGQKPKILIPFRMNKEGIKKKKTTESTQG---HLDILGCGQYFVAYNIHPKTKKEYTW 150
              G+K +    + + K    + K+ +   G   HL+  G     +         + Y W
Sbjct: 136 FTSGRKYRSQRLYLIPKSKAWEVKSRKIKTGKDEHLEFRGKNLASILPPSFHPEGRNYRW 195

Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNR 208
                  +     +  +  +  +    ++     +  +K           +      +N 
Sbjct: 196 LPGCSPSE-RQIEIAPDWVIAQMLAKQEKTRKFNLLKEKYNRRYGVDRYAHLIPSIESNI 254

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           +    L       +   +  WI V MA+      S    +    WS+    Y      YK
Sbjct: 255 QTALVLLEVIHPRFADDYHSWIQVGMALKSV---SPILFKAWDTWSQLSPKYKPGECAYK 311

Query: 269 WDTFDFEEIGDTA 281
           W +F    I    
Sbjct: 312 WQSFKKTGITIRT 324


>gi|20178485|ref|NP_619906.1| CPXV122 protein [Cowpox virus]
 gi|20153103|gb|AAM13564.1|AF482758_115 CPXV122 protein [Cowpox virus]
          Length = 785

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  K Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679


>gi|51342262|gb|AAU01306.1| MPXV-WRAIR096 [Monkeypox virus]
 gi|58220566|gb|AAW67854.1| MPXV-SL-096 [Monkeypox virus]
 gi|59858902|gb|AAX09197.1| MPXV-COP-096 [Monkeypox virus]
 gi|68448778|gb|AAY96901.1| NTPase [Monkeypox virus]
 gi|68449380|gb|AAY97500.1| NTPase [Monkeypox virus]
 gi|68449580|gb|AAY97699.1| NTPase [Monkeypox virus]
          Length = 785

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  K Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679


>gi|2772775|gb|AAB96514.1| putative 90.4k protein [Vaccinia virus]
 gi|47088430|gb|AAT10500.1| NTPase [Vaccinia virus]
          Length = 785

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    I S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLIDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  K Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679


>gi|255283191|ref|ZP_05347746.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
 gi|255266264|gb|EET59469.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
          Length = 1386

 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 126/329 (38%), Gaps = 27/329 (8%)

Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIH 505
           +K  Y +K    P   G   + +  L+S  +  EE        +G  + G +K  Q+F+ 
Sbjct: 122 SKNDYASKRLSYPLEAG-EIKAYDRLISTLYSPEE-RHKIEWAIGAIVSGESKTIQKFMV 179

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G  G+GKST++N+I+  F     +          +   +  +  +L     + +V I 
Sbjct: 180 LYGAAGTGKSTVLNIIEKLFDGYCTV-------FSAKDLGSSGSQFALEPFKTNPLVAIQ 232

Query: 566 ETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
              E   I+   ++  +   + MT    + +TY+        F+  NK + + +      
Sbjct: 233 HDGELSRIDDNTRLNSLVSHELMTVNEKFKSTYAS-RFKCFLFVGSNKPVKITDGKSGLI 291

Query: 625 RRYIVI-PFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
           RR I + P  K I +R+ +    +++ +  L A  W  +GV        D  IP   L A
Sbjct: 292 RRLIDVHPSGKKIPSREYNQLVHQIDFE--LGAIAWHCRGVYMENPDYYDDYIPVEMLDA 349

Query: 683 KEE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
             +      D+Y  +  +    G +L        + Y +Y E          S R     
Sbjct: 350 TNDFYNFVIDSYSVFKRED---GTSLKAAW----EMYKQYCEDAK--VPYPDSRRVFKEE 400

Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
           LK   F   + R ++E   + +   KG +
Sbjct: 401 LKN-YFREVLDRFEMEDGTRVRSYYKGFR 428


>gi|90660347|gb|ABD97461.1| NTPase [Cowpox virus]
          Length = 785

 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  K Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679


>gi|22164699|ref|NP_671612.1| EVM094 [Ectromelia virus]
 gi|22123840|gb|AAM92398.1|AF523264_94 EVM094 [Ectromelia virus]
          Length = 785

 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L+K A G+ +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  K Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679


>gi|137601|sp|P21010|VD05_VACCC RecName: Full=Protein D5
 gi|335450|gb|AAA48102.1| putative D5R [Vaccinia virus Copenhagen]
          Length = 785

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 96/280 (34%), Gaps = 43/280 (15%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG------EPSQEFLDLVS 474
           D+    L  ++G+LDL  G        K+   T STG  F +          +E +++++
Sbjct: 407 DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIIN 466

Query: 475 GYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
                   +++  + + + +   L G  K        G   +GKST   L+K A G+ +V
Sbjct: 467 DIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETATGKSTTKRLLKSAIGDLFV 525

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGD 585
              +               NP +  +   R V  SE  +     + +I +  IK++T   
Sbjct: 526 ETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLT-EP 580

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------ 639
           C+  R  + N  +      T  I  N        D+A  RR  V+ F    +        
Sbjct: 581 CVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFSQPSGREAA 639

Query: 640 ------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
                       D     K++   Y        +K  K Y
Sbjct: 640 ENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679


>gi|6969760|gb|AAF33972.1| TD5R [Vaccinia virus Tian Tan]
          Length = 785

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/280 (20%), Positives = 96/280 (34%), Gaps = 43/280 (15%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEFLDLVS--- 474
           D+    L  ++G+LDL  G        K+   T STG  F +    E S E  +L++   
Sbjct: 407 DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIIK 466

Query: 475 GYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
                   +++  + + + +   L G  K        G   +GKST   L+K A G+ +V
Sbjct: 467 DIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETATGKSTTKRLLKSAIGDLFV 525

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGD 585
              +               NP +  +   R V  SE  +     + +I +  IK++T   
Sbjct: 526 ETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLT-EP 580

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------ 639
           C+  R  + N  +      T  I  N        D+A  RR  V+ F    +        
Sbjct: 581 CVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFSQPSGREAA 639

Query: 640 ------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
                       D     K++   Y        +K  + Y
Sbjct: 640 ENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|9632024|ref|NP_048813.1| hypothetical protein PBCV1_A456L [Paramecium bursaria Chlorella
           virus 1]
 gi|1620128|gb|AAC96824.1| contains ATP/GTP-binding site motif A [Paramecium bursaria
           Chlorella virus 1]
          Length = 654

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 141/431 (32%), Gaps = 40/431 (9%)

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
             +SE  +      K    W       QN++    A     +     +       L  S 
Sbjct: 233 RAVSEIKDFVYSRLKKEVSWEQWKNATQNMKNVGSAVEYLTNCHDHQL-----PFLHKSR 287

Query: 427 RFLGEQDGIL-------DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD---LVSGY 476
                 +G+             +K   +  +  +K     F        F      +   
Sbjct: 288 GVYSFYNGVYIAPEDRFHCFETEKEPLSDSIVASKFIEGNFDNTHYDDWFDIPTPHLDSI 347

Query: 477 FE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
                  EEV  +    +G  L   N     Q     +G+  +GKST++  +   F    
Sbjct: 348 MIYQQWEEEVQRWLFALLGRILYPVNQVDSWQVIPFFKGLAATGKSTIILKVIKNFFETV 407

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
            +   ++++ +            +        V+  E   +  I  A+ + M  G+ +  
Sbjct: 408 DVGILSNNVERKFG---------ISAFHDKYCVLAPEIKSDLAIEQAEFQSMVSGEDVQV 458

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET 649
            + +   ++E   S    +  N+     +   +  RR +V  F KP+ N D    +KL+ 
Sbjct: 459 NVKHKKAFAE-EWSVPMALAGNEVPGWADNGGSIQRRMVVFEFKKPVRNGDMKLGEKLD- 516

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLKAKEEERQGTDTYQAWIDD-CCDIG 704
           K      +   K       K  DV+I    PE  +  +E   + T+  ++++      +G
Sbjct: 517 KELPYILRKCNKAYLDLAGKYSDVNIWSVLPEYFINTREALARATNFIESFMASGDVILG 576

Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF-IGGIKREKIEKEWKSK 763
           EN          +  E+    + +  K+++    T   ++ G    G +  +   +  + 
Sbjct: 577 ENEICPFGDFKSALREHATMNVMHT-KQLTADVFTGPFEKYGIKYLGTQTLEYCGQSVNT 635

Query: 764 RIIKGLKLKPA 774
             I+GL LK A
Sbjct: 636 EFIQGLSLKSA 646


>gi|19718057|gb|AAG37582.1| CMP107R [Camelpox virus CMS]
          Length = 785

 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 96/280 (34%), Gaps = 43/280 (15%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG------EPSQEFLDLVS 474
           D+    L  ++G+LDL  G        K+   T STG  F +          +E +++++
Sbjct: 407 DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMKELMNIIN 466

Query: 475 GYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
                   +++  + + + +   L G  K        G   +GKST   L+K A G+ +V
Sbjct: 467 DIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETATGKSTTKRLLKSAIGDLFV 525

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGD 585
              +               NP +  +   R V  SE  +     + +I +  IK++T   
Sbjct: 526 ETGQIILTD----VLDKGPNPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLT-EP 580

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------ 639
           C+  R  + N  +      T  I  N        D+A  RR  V+ F    +        
Sbjct: 581 CVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFSQPSGREAA 639

Query: 640 ------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
                       D     K++   Y        +K  + Y
Sbjct: 640 ENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|18640342|ref|NP_570498.1| CMLV108 [Camelpox virus]
 gi|18483018|gb|AAL73815.1|AF438165_105 putative NTPase [Camelpox virus M-96]
          Length = 785

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 96/280 (34%), Gaps = 43/280 (15%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG------EPSQEFLDLVS 474
           D+    L  ++G+LDL  G        K+   T STG  F +          +E +++++
Sbjct: 407 DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMKELMNIIN 466

Query: 475 GYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
                   +++  + + + +   L G  K        G   +GKST   L+K A G+ +V
Sbjct: 467 DIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETATGKSTTKRLLKSAIGDLFV 525

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGD 585
              +               NP +  +   R V  SE  +     + +I +  IK++T   
Sbjct: 526 ETGQIILTD----VLDKGPNPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLT-EP 580

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------ 639
           C+  R  + N  +      T  I  N        D+A  RR  V+ F    +        
Sbjct: 581 CVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFSQPSGREAA 639

Query: 640 ------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
                       D     K++   Y        +K  + Y
Sbjct: 640 ENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|326439149|ref|YP_004300279.1| putative superfamily 3 helicase [Mavirus]
 gi|325484986|gb|ADZ16400.1| putative superfamily 3 helicase [Mavirus]
          Length = 652

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 117/376 (31%), Gaps = 30/376 (7%)

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
           + +  N+  K    S+ +   + IT    +     +  Q+G  +L      + TK  +I 
Sbjct: 108 KMILNNTFIKRNISSIRSNLTYDIT---FNDDPDGIHFQNGRFNLLNNTLEERTKPCFIN 164

Query: 454 KSTGTPF--VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR-FIHIRGVG 510
           +     F   + E        +   F  +E  +Y    +G  L G   A++ F+   G G
Sbjct: 165 QYIKRDFINPKEETINWLNSKIDQLFREKEAREYCLHMLGGMLSGRVCAKQEFLVNYGQG 224

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
             GKSTL N I  A  + Y    +      +   +    N          +  I      
Sbjct: 225 ARGKSTLYNFINAAVSDVYFQCLKNDTFSNHNNNKDKSLNSFNNYTRYYFLNEIDT---- 280

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             +N   IK +  G  +     Y +   ++    T   V N  +  +  D    RR    
Sbjct: 281 RSLNTDLIKSVVDG-KIQTNKLYQDGTFKTRTQGTLIFVSNHMINFK-TDSGIERRLKGY 338

Query: 631 PFDKPIANRDASF--------AQKLETKYT---LEAKKWFLKGVKAYISKGLDVDIPEVC 679
            +     +              +KL         E K      + + + K     IPE  
Sbjct: 339 EYKNEFTDDKTRVNNDTVYLKDEKLFNAEENFTDEQKNAMFYILSSQLVKENVPTIPECF 398

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS-EYREQELNYDRKRISTRTV 738
               ++     D +  +I+      +        + ++   EY        +K I    V
Sbjct: 399 TSVTDDIVDANDEWAHFIEKYLIEEKGAKVHIDYIIENVRLEY------PTKKNIGRSQV 452

Query: 739 TLNLKQKGFIGGIKRE 754
              LK KGF    K +
Sbjct: 453 LSELKDKGFNYNRKLK 468


>gi|170751665|ref|YP_001757925.1| hypothetical protein Mrad2831_5295 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170658187|gb|ACB27242.1| hypothetical protein Mrad2831_5295 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 1349

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 102/335 (30%), Gaps = 55/335 (16%)

Query: 5   QWKEQAKQAIHNGFKLIPLRLGDKR-------PQ------RLGKWEEQLLSSEKIDKLPA 51
           ++   A   + NG+ L P     +R       P       +    +E+L +++++     
Sbjct: 70  RFSAVAPACVANGWSLFPQARSGRRGPILVKQPGRSSKALQWKPLQERLPTADELSWWAE 129

Query: 52  -------CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP-IVRIGQKPKIL 103
                       + G         DID  D   A       +   G     R+G+ P+++
Sbjct: 130 SDGPRNRANVALIMGEVSGRALCLDIDVSDPTLAQAILALVDRHLGRTEFRRVGRAPRLV 189

Query: 104 IPFRMNKEGIKKKKT----TESTQGH---LDILGCGQYFVAYNIHPKTKKEYTWTTP--P 154
           + +R +     + KT     +   G+   +++L   +    +  H KT   + W     P
Sbjct: 190 LIYRSDVSDPVRNKTYALDAKDDGGNDQAIEVLADRKPVTGFGAHHKTGAHFQWVGACRP 249

Query: 155 HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK-------SIIPSKTWTNNNNRQYTN 207
                E  P++++  VE          + +   +          +     T +   Q   
Sbjct: 250 DTHGPEHAPVITQAQVEDFISAVDAAGIIVPNLRNAVAWGDGVPLDPALVTASGFIQPAV 309

Query: 208 REITAFLSCFGEEFYNGSHDEWIPV----------VMAVHHETRGSSKGK---EIARRWS 254
            +  A +    +       + ++             MA+  E R +  G    E+   ++
Sbjct: 310 NQAMAGVKWDAKGKVIAGREAFLHSRAFSYVVRNPGMALTDEGRYALAGHLIAEVTDLFA 369

Query: 255 KQGSTYDEEN-----FNYKWDTFDFEEIGDTAKKR 284
             G  +            + D+   +      + R
Sbjct: 370 AGGDRFRSSTELARGCRERIDSAAAKLARGEVRAR 404


>gi|239621443|ref|ZP_04664474.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239515904|gb|EEQ55771.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 766

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 105/339 (30%), Gaps = 49/339 (14%)

Query: 6   WKEQAKQAIHNGF-KLIPLRLGDKRPQRLG--KWEEQLLSSEKIDKL----PACGFGFVC 58
           +   A      G+ ++IPL  G K P   G      + ++ E++       P    G V 
Sbjct: 7   YTAAAPMYRAAGWMQVIPLPEGRKTPPPAGFTGRSRKPVTDEQVQVWSQATPDANTGIVI 66

Query: 59  GVGEQPLYAFDIDSKD-----EKTANTFKDTFEILHGTPIVRIGQ-----KPKILIPFRM 108
               + +   DID+          A    +  + L   P            P   + +++
Sbjct: 67  ---PEGVLVLDIDAAQGHQVKADGAKGISELSQELGVLPATWSSTAHGIDSPARHLFYKV 123

Query: 109 NKEGIKKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
            +               +DIL  G +Y V +     + + Y W TP   F     P +S+
Sbjct: 124 PEGL----AWKGGAIEGVDILQPGHRYSVVWPSIHPSGEMYCWYTPSGAF-ASTLPHISD 178

Query: 168 --EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
                     + ++        +     S T T +N R+Y +R   A  +   +   N +
Sbjct: 179 LATLPWKWVDYLRKPDNMSNPKELKCSNSNTLTPSNPREYDDRMCKAVNTFLNKTLANPA 238

Query: 226 -----HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY----------DEENFNYKWD 270
                HD  +  V A+ +  +   +G       S+    +           E     +W 
Sbjct: 239 SKGSRHDTTLQAVWALVNFAQEGHRGAL--DAISQLKPRFIAEVAPDRQGKEREAAREWA 296

Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
           +     +    +K +   S      +   + +    F +
Sbjct: 297 SI----LSGAMEKVNGVQSHVDPCEQSKIERMTPGEFDE 331


>gi|38229245|ref|NP_938338.1| 83R [Yaba monkey tumor virus]
 gi|38000516|gb|AAR07439.1| 83R [Yaba monkey tumor virus]
          Length = 786

 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 123/372 (33%), Gaps = 53/372 (14%)

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN-----VEENSKAKST 405
           I  + +  L    + +  +    + NN+ +   +   N   +        +    K K  
Sbjct: 333 IMDANVIRLTERGDHIVWIKNSWKFNNEENVITKLVLNMKDQLPLEYTPDILCPRKRKVI 392

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEG 463
             +L+   + ++ +   D+    L  ++G+LD+ +G     + +K+   T ST   F   
Sbjct: 393 ENNLKDMLVDTVET---DTYPHILPFKNGVLDITSGSFYYGEESKKFICTVSTDFNFEMD 449

Query: 464 ----EPSQEFLDL---VSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                 S E  +L   +         + +  + + R +   L G  K        G   +
Sbjct: 450 KFLDNDSNEIKELTCIIDDIQPKTCENLKNRELYERTLSSCLCGSTKQ-CITFFFGETAT 508

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569
           GKST   L++ A G+ ++   +               NP +  +   R V  SE  +   
Sbjct: 509 GKSTTKRLLQSAIGDLFIETGQTILTD----LMDKGPNPFISNMHLKRSVFCSELPDFAC 564

Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + +I A  +K++T   C+  R  + N  +      +  I  N        D A  RR 
Sbjct: 565 SGSKKIRADNVKKLT-EPCIVGRSCFSNKINN-RNHASIIIDTNYKPIFDRVDCALMRRV 622

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAYIS 668
            +I F    +                    D +   K++ K Y        +K  + Y  
Sbjct: 623 SLIKFRTHFSQPTNVEAAKSNSAYDDVKPLDENLDMKIQKKCYRFAFLNMLVKWYQKYHV 682

Query: 669 KGLD-VDIPEVC 679
             +     P+  
Sbjct: 683 PTMRLFPTPDAV 694


>gi|313768370|ref|YP_004062050.1| hypothetical protein MpV1_167c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599066|gb|ADQ91090.1| hypothetical protein MpV1_167c [Micromonas sp. RCC1109 virus MpV1]
          Length = 650

 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/371 (10%), Positives = 115/371 (30%), Gaps = 34/371 (9%)

Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEG--EPSQEFLDLVSGYFESEEVMDYFTRC-- 489
           G+ D                      + +   +      D         + +  + +   
Sbjct: 292 GVYDCRFYPYKSEKYACLDASIIACKYFDQQFDDFSHIEDWTKIPTPYFDSILKYQKFEE 351

Query: 490 ----VGMALLGGNK--------AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
                   + G            Q     +G+  SGKSTL+  +   F     +   +++
Sbjct: 352 EVCNWAYVMGGRLCFDIGELDGWQIIPFFKGIARSGKSTLITKVFKKFYENEDVGTLSNN 411

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           I +            L  +  + + I  E   +  +  A+ + +  G+ ++  +    T 
Sbjct: 412 IEKKFG---------LSAIKDAFMFIAPEVKGDLALEQAEFQSIVSGEDVSVAVKNK-TA 461

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
                     +  N+    ++   +  RR +   F K + + D    +KL          
Sbjct: 462 VSIEWKVPGVLGGNEVPNWKDNSGSVLRRILPWNFGKQVQDADPQLDEKLNM-ELPIILL 520

Query: 658 WFLKGVK----AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESH 712
             ++        Y ++ +   +P+   + +++      +   +++     +G++L+    
Sbjct: 521 KCVRAYHDYSNKYRNRDIWNVVPKYFKQIQKQVAMVASSLTNFLESTYVVLGDDLFVPQK 580

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW-KSKRIIKGLKL 771
                ++++ ++  N    +            +     ++  K +    K++ II GL +
Sbjct: 581 DFVTKFNQHCKEN-NLGSHKFHQDFYAGPFSSREIEVRVETVKYKGRVCKNQPIIYGLDI 639

Query: 772 KPAFESVDDNS 782
                +  D++
Sbjct: 640 VTDDLTYTDDN 650


>gi|157953752|ref|YP_001498643.1| hypothetical protein AR158_C562L [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068400|gb|ABU44107.1| hypothetical protein AR158_C562L [Paramecium bursaria Chlorella
           virus AR158]
          Length = 654

 Score =  104 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/454 (14%), Positives = 145/454 (31%), Gaps = 39/454 (8%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
                K+   +   ++    D+       E  +      +   + +  +          S
Sbjct: 208 EKKYRKVGDWLYEPIIIDGRDMHSWRAVSEIKDFVYSRLKKEISWEQWKNATLNMKNVGS 267

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL-------YITKSTG 457
             + L     + +    L  S       +G+      +      E          +K   
Sbjct: 268 AVEYLTNCHDYQL--PFLHKSRGVYSFYNGVYIAPEDRFHCFDTEKEPLSDSIVASKFIE 325

Query: 458 TPFVEGEPSQEFLD---LVSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIR 507
             F        F      +          E+V  +    +G  L   N     Q     +
Sbjct: 326 GNFDNTYYDDWFDIPTPHLDSIMIFQQWEEDVQRWLFALLGRMLYPVNQVDSWQVVPFFK 385

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G+  +GKST++  +   F     +   +++I +            +        V+  E 
Sbjct: 386 GLAATGKSTIILKVIKNFFETVDVGILSNNIERKFG---------ISAFHDKFCVLAPEI 436

Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             +  I  A+ + M  G+ +   + +   ++E        +  N+     +   +  RR 
Sbjct: 437 KNDLAIEQAEFQSMVSGEDVQVNVKHKKAFAE-EWRVPMALAGNEVPGWADNGGSIQRRL 495

Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLKAK 683
           +V  F KP+ + D    +KL+ K      +   K       K  DV+I    PE  +  +
Sbjct: 496 VVFEFKKPVRHGDMKLGEKLD-KELPFILRKCNKAYLDLAGKYSDVNIWSVLPEYFINTR 554

Query: 684 EEERQGTDTYQAWI-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
           E   + T+  ++++      +GEN          +  E+    + +  K+++    T   
Sbjct: 555 EALARATNFIESFMASSEVILGENEICSLGDFKSALREHATMNVMHT-KQLTADVFTGPF 613

Query: 743 KQKG--FIGGIKREKIEKEWKSKRIIKGLKLKPA 774
           ++ G  F+G    +   +   ++  I+GL LK A
Sbjct: 614 EKYGIKFLGAQTLDYCGQSVHTE-FIQGLSLKSA 646


>gi|241895004|ref|ZP_04782300.1| conserved hypothetical protein [Weissella paramesenteroides ATCC
           33313]
 gi|241871722|gb|EER75473.1| conserved hypothetical protein [Weissella paramesenteroides ATCC
           33313]
          Length = 576

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/373 (14%), Positives = 113/373 (30%), Gaps = 20/373 (5%)

Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444
           FW     R   V+  S+++S      A          L+S+   L    G L+L T +  
Sbjct: 177 FWLTLLTRILGVKATSQSESETLIALAKIAHRFDFAKLNSTYTTLVT--GDLNLSTFELE 234

Query: 445 KPTKELYITKSTGTPFVEGEPS--QEFLDLVS-GYFESEEVMDYFTRCVGMALLGGNKAQ 501
                   +                 +   +   +   EE + +    +   LL  N   
Sbjct: 235 PFDARHMTSYQLNLTPDLDAQVMPPAWQKYLDGQWKNDEETVTFILEWLATHLLLQN-PG 293

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
           + + +   GGSGK+ L++ I+     Q   +     + +    E         R    R 
Sbjct: 294 KVLFLYSPGGSGKTLLLDAIRAMLSPQLTASVPTYQLDRQFGLEYLLQGD---RQTVVRA 350

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP-- 619
            ++ E   N  I+ +KIK++   + +        +    P +       N      N   
Sbjct: 351 NLVDENAINKGIDWSKIKRLADVNAVMNVDRKNTSSLLLPMNVQCTFAMNTLDVQTNNVE 410

Query: 620 -DDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYI-SKGLDVDI 675
              A  R+  ++ F+K  +    D    +++  +   +     ++ +K       +    
Sbjct: 411 TTYAVQRKVCLLRFEKSFSKEEMDEDLGRRMI-EELPQLGGLLIQTLKEMKGRDDMVPKE 469

Query: 676 PEVCLKAKEEER----QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
               L  K+       Q      ++  +      +       L  ++ +Y  +       
Sbjct: 470 SHKMLADKKAWFASMTQDNSPVASFATERLQQKNDESVTRIELLDAFVDYCVKRDIPKNG 529

Query: 732 RISTRTVTLNLKQ 744
             S R     L++
Sbjct: 530 FDSPRRFFPELRR 542


>gi|257455559|ref|ZP_05620789.1| bifunctional DNA primase/polymerase domain protein [Enhydrobacter
           aerosaccus SK60]
 gi|257447025|gb|EEV22038.1| bifunctional DNA primase/polymerase domain protein [Enhydrobacter
           aerosaccus SK60]
          Length = 768

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 79/277 (28%), Gaps = 39/277 (14%)

Query: 37  EEQLLSSEK-----IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG- 90
           +    + +        K P              L A DID ++    +   +  E  HG 
Sbjct: 54  QNSATTDKDMITQWWGKYPQANIAIFL--AGSGLCAVDIDPRNG--GDYTIEVLESEHGK 109

Query: 91  --TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148
             + ++++         F +        K   +    +D    G Y +A      + + Y
Sbjct: 110 IDSDVLQLTGGGGEHRVFLLPS---GDVKLPGTLGKGVDFKSNG-YIIAEPSSHISGQSY 165

Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208
            W              +     +++  F         +           T   +   ++ 
Sbjct: 166 VWEMSSDPL----AGAVPSPLPDWIRSFNINAAHASNE-----------TGTLHNGMSDN 210

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           +    L        +   D W+ V MA+  +  G  +  ++   WS+  S +D+ +    
Sbjct: 211 QYYDVLEALQ-FIGSDDRDTWLNVGMAL--QASGDKRAYQMWCDWSQASSKFDQNDQYRV 267

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS 305
           W +F  + +G          ++F            A 
Sbjct: 268 WRSFKGKGLGSI-----DLPTIFKMAQDNGWVNSNAK 299


>gi|9634728|ref|NP_039021.1| NTPase, DNA replication [Fowlpox virus]
 gi|19857121|sp|P21969|VD05_FOWPN RecName: Full=Protein FPV058
 gi|7271556|gb|AAF44402.1|AF198100_49 ORF FPV058 NTPase, DNA replication [Fowlpox virus]
 gi|41023349|emb|CAE52603.1| DNA replication complex protein D5R orthologue [Fowlpox virus
           isolate HP-438/Munich]
          Length = 791

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 22/235 (9%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFES- 479
           D+    L   +G+ D++     +    K+   T STG  + EG    +    +    +  
Sbjct: 411 DTYPEKLQFLNGVYDIKDSIFYQGNDAKKFVCTVSTGYKYEEGINVDDITTELMSILDDI 470

Query: 480 -------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
                   E  + + + +   L+G  K        G   +GKST   L+K    N ++  
Sbjct: 471 QPKTKENFENRELYEQILSSCLMGTTKQ-CIFFFYGETATGKSTTKKLLKSVMHNMFLET 529

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCM 587
            +     Q         NP +  +   R+V  SE  +     + +I +  IK++T   C+
Sbjct: 530 GQVILTEQ----MDKGPNPFIANMHLKRVVFCSELPDFSCNTSKKIRSDNIKKLT-EPCV 584

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
             R  Y N  +      T  I  N        D+A  RR  ++ F     N    
Sbjct: 585 VGRSCYSNKINN-RNHATIIIDTNYKPVFDKVDNAIMRRIALVNFKTHFTNTKKK 638


>gi|61228|emb|CAA35068.1| ORF FPD5 [Fowlpox virus]
          Length = 791

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 22/235 (9%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFES- 479
           D+    L   +G+ D++     +    K+   T STG  + EG    +    +    +  
Sbjct: 411 DTYPEKLQFLNGVYDIKDSIFYQGNDAKKFVCTVSTGYKYEEGINVDDITTELMSILDDI 470

Query: 480 -------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
                   E  + + + +   L+G  K        G   +GKST   L+K    N ++  
Sbjct: 471 QPKTKENFENRELYEQILSSCLMGTTKQ-CIFFFYGETATGKSTTKKLLKSVMHNMFLET 529

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCM 587
            +     Q         NP +  +   R+V  SE  +     + +I +  IK++T   C+
Sbjct: 530 GQVILTEQ----MDKGPNPFIANMHLKRVVFCSELPDFSYNTSKKIRSDNIKKLT-EPCV 584

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
             R  Y N  +      T  I  N        D+A  RR  ++ F     N    
Sbjct: 585 VGRSCYSNKINN-RNHATIIIDTNYKPVFDKVDNAIMRRIALVNFKTHFTNTKKK 638


>gi|182637532|ref|YP_001828703.1| putative helicase [Lactococcus phage 1706]
 gi|157884971|gb|ABV91262.1| putative helicase [Lactococcus phage 1706]
          Length = 1317

 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 61/465 (13%), Positives = 143/465 (30%), Gaps = 64/465 (13%)

Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
                 +Y         W+             +  +   +  + ++  +     ++    
Sbjct: 35  VVKGGDFYAY-------WNGETW---------ITDIDSLIKAIDQDSWERFNELRALDPN 78

Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
              + ++ +   +       Q  +      I  +        +   +             
Sbjct: 79  LRINVKQMDFASSGIMAKFQQYCQLRKPSDIQFNK------KILFSNYT----------- 121

Query: 447 TKELYITKSTGTPFVE-GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFI 504
             +     +    +      +  F +L+S  +  EE+       +G  L G  +K ++F+
Sbjct: 122 -PKKTDYSTYQLSYTPTEMETPAFDELMSVLYADEELEKILW-ALGALLSGKMSKIEKFL 179

Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
           ++ G  G+GK T +N+IK  F  QY    +   +        G +  +   +    ++I 
Sbjct: 180 YLYGAKGTGKGTAINIIKKMF-EQYWGPIDLRTLT-------GSSEFATSAVTEVPMLID 231

Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
           ++++ +   N   + ++T  + +   + + + Y             N+   V+N D    
Sbjct: 232 ADSDISRIRNEQNLLKLTSHEELMRNVKFKSPY-PVVFDGLLITASNERYTVKNKDSGIT 290

Query: 625 RRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
           RR IV+ P  K +         K             ++  K    +G       +     
Sbjct: 291 RRAIVVNPTGKTVPYDMYQRLYKQIDYEIPGIAYRAMQIFK---KRGASYYEN-LVDTEM 346

Query: 684 EEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
            E    +D   A+I +   +     + +   +  +Y  Y              +     L
Sbjct: 347 VEY---SDKVFAFIRESSFNYIGKEYVKLVDVVPAYQRYLTDMG------WDNKGAKREL 397

Query: 743 KQ---KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
           K    K F   +K  K E+  +   + KG +   AF    +N  +
Sbjct: 398 KNELHKYFESYVKDTKDEEGNRIYDVYKGFRTDIAFPEEVNNKEV 442


>gi|260893044|ref|YP_003239141.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
 gi|260865185|gb|ACX52291.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
          Length = 283

 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 66/236 (27%), Gaps = 34/236 (14%)

Query: 9   QAKQAIHNGFKLIPLR----------------LGDKRPQRLGKWEEQLLSSEKI----DK 48
            A++    G+ ++PL                  G K P      +E    SE I     +
Sbjct: 11  YAERF---GWAVLPLHSIAGGRCTCGRVNCPSPG-KHPLTQHGVKEASKDSETIAAWWRR 66

Query: 49  LPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRM 108
            P    G   G      +  D+D  + + +              + +I       + FRM
Sbjct: 67  WPWANIGVATGSIS-GFFVLDVDGPEGEDSLYELVKRHGELPETVEQITGSGGRHLLFRM 125

Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
            +   +           LD+ G G Y VA      + + Y W       +V +       
Sbjct: 126 PEG--RAIGNKVRLAPGLDVRGEGGYVVAAPSLHASGRRYEWEFSSRPGEV-EVAEAPGW 182

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
            +E L         P+ + ++        +        N  I A       +  + 
Sbjct: 183 LLELLAGPAGSQGRPVEEWRQ------LISGGVEEGQRNNSIAALAGHLLRKRVDP 232


>gi|94485354|gb|ABF24463.1| NTPase [Variola virus]
 gi|94485557|gb|ABF24665.1| NTPase [Variola virus]
 gi|94488191|gb|ABF27286.1| NTPase [Variola virus]
 gi|94488391|gb|ABF27485.1| NTPase [Variola virus]
 gi|109726175|gb|ABG45291.1| NTPase [Variola virus]
          Length = 785

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 120/358 (33%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELINIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-- 570
           GKST   L+K A  + +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAISDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 571 ---DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
               +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGTKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|9627616|ref|NP_042139.1| hypothetical protein VARVgp095 [Variola virus]
 gi|418200|sp|P33069|VD05_VAR67 RecName: Full=Protein D5
 gi|62371|emb|CAA47594.1| ATP /GTP binding protein [Variola virus]
 gi|297275|emb|CAA49036.1| F5R [Variola virus]
 gi|439013|gb|AAA60843.1| homolog of vaccinia virus CDS D5R; putative [Variola major virus]
 gi|94483946|gb|ABF23062.1| NTPase [Variola virus]
 gi|94484149|gb|ABF23264.1| NTPase [Variola virus]
 gi|94484558|gb|ABF23671.1| NTPase [Variola virus]
 gi|94484756|gb|ABF23868.1| NTPase [Variola virus]
 gi|94484954|gb|ABF24065.1| NTPase [Variola virus]
 gi|94485152|gb|ABF24262.1| NTPase [Variola virus]
 gi|94485962|gb|ABF25068.1| NTPase [Variola virus]
 gi|94486163|gb|ABF25268.1| NTPase [Variola virus]
 gi|94486366|gb|ABF25470.1| NTPase [Variola virus]
 gi|94486569|gb|ABF25672.1| NTPase [Variola virus]
 gi|94486771|gb|ABF25873.1| NTPase [Variola virus]
 gi|94486974|gb|ABF26075.1| NTPase [Variola virus]
 gi|94487177|gb|ABF26277.1| NTPase [Variola virus]
 gi|94487583|gb|ABF26681.1| NTPase [Variola virus]
 gi|94487784|gb|ABF26881.1| NTPase [Variola virus]
 gi|94488591|gb|ABF27684.1| NTPase [Variola virus]
 gi|94488792|gb|ABF27884.1| NTPase [Variola virus]
 gi|94488993|gb|ABF28084.1| NTPase [Variola virus]
 gi|94489192|gb|ABF28282.1| NTPase [Variola virus]
 gi|94489392|gb|ABF28481.1| NTPase [Variola virus]
 gi|94489594|gb|ABF28682.1| NTPase [Variola virus]
 gi|94489794|gb|ABF28881.1| NTPase [Variola virus]
 gi|94490203|gb|ABF29288.1| NTPase [Variola virus]
 gi|109724138|gb|ABG43264.1| NTPase [Variola virus]
 gi|109724342|gb|ABG43467.1| NTPase [Variola virus]
 gi|109724544|gb|ABG43668.1| NTPase [Variola virus]
 gi|109724749|gb|ABG43872.1| NTPase [Variola virus]
 gi|109725156|gb|ABG44277.1| NTPase [Variola virus]
 gi|109725361|gb|ABG44481.1| NTPase [Variola virus]
 gi|109725564|gb|ABG44683.1| NTPase [Variola virus]
 gi|109725768|gb|ABG44886.1| NTPase [Variola virus]
 gi|109725971|gb|ABG45088.1| NTPase [Variola virus]
 gi|109726378|gb|ABG45493.1| NTPase [Variola virus]
 gi|109726581|gb|ABG45695.1| NTPase [Variola virus]
 gi|745214|prf||2015436DG F5R gene
          Length = 785

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 120/358 (33%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELINIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-- 570
           GKST   L+K A  + +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAISDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 571 ---DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
               +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGTKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|5830656|emb|CAB54695.1| F5R protein [Variola minor virus]
 gi|94483741|gb|ABF22858.1| NTPase [Variola virus]
 gi|94484354|gb|ABF23468.1| NTPase [Variola virus]
 gi|94485759|gb|ABF24866.1| NTPase [Variola virus]
 gi|94487379|gb|ABF26478.1| NTPase [Variola virus]
 gi|94487988|gb|ABF27084.1| NTPase [Variola virus]
 gi|94489998|gb|ABF29084.1| NTPase [Variola virus]
          Length = 785

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 120/358 (33%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELINIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-- 570
           GKST   L+K A  + +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAISDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 571 ---DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
               +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGTKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|109724952|gb|ABG44074.1| NTPase [Variola virus]
          Length = 785

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 120/358 (33%), Gaps = 51/358 (14%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404
           +I  +    L    + +  ++   + N++     +   +  ++        +    K K+
Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462
              ++    + S+ +   D+    L  ++G+LDL  G        K+   T STG  F +
Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448

Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                     +E +++++        +++  + + + +   L G  K        G   +
Sbjct: 449 TKFVEDSPEMEELINIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-- 570
           GKST   L+K A  + +V   +               NP +  +   R V  SE  +   
Sbjct: 508 GKSTTKRLLKSAISDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563

Query: 571 ---DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
               +I +  IK++T   C+  R  + N  +      T  I  N        D+A  RR 
Sbjct: 564 SGTKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621

Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666
            V+ F    +                    D     K++   Y        +K  + Y
Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679


>gi|301116649|ref|XP_002906053.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262109353|gb|EEY67405.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 238

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 84/241 (34%), Gaps = 13/241 (5%)

Query: 425 SSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
              ++G  +G+ DL T + +  T   +    +       E   +  F    S  F  EE 
Sbjct: 4   DHNYIGFSNGVYDLSTAKFINATDVPKGIQVRKYINQRFEHTETPLFDKYFSFQFTEEED 63

Query: 483 MDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
            ++    +G  L    +K    + I G GGSGKS L NL+K+AFG   +     S   Q 
Sbjct: 64  REFIYFLIGRCLTVLDDKFDFMLMIHGQGGSGKSLLANLVKFAFGQDQIGLLSNSM--QE 121

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
           +   +  A   ++        I      +D +       M     ++  +    +     
Sbjct: 122 KFGLSEFATKQIVCCDDMPHNIAKTLPRSDFL------SMMTRGSISCPVKGKGSIEVLD 175

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659
            +    I  N     ++      RR +++ F K + +   D    QK++ +         
Sbjct: 176 WNIPTLINSNHMPNYKDEAGEIVRRLMIVEFGKQVPDDEVDVELEQKIKDQEFATFLHRC 235

Query: 660 L 660
           L
Sbjct: 236 L 236


>gi|157952927|ref|YP_001497819.1| hypothetical protein NY2A_B623L [Paramecium bursaria Chlorella
           virus NY2A]
 gi|155123154|gb|ABT15022.1| hypothetical protein NY2A_B623L [Paramecium bursaria Chlorella
           virus NY2A]
          Length = 654

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 65/455 (14%), Positives = 143/455 (31%), Gaps = 43/455 (9%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
                K+   +   ++    D+       E  +      +   + +  +          S
Sbjct: 208 EKKYRKVGDWLYEPIIIDGRDMHSWRAVSEIKDFVYSRLKKEISWEQWKNATLNMKNVGS 267

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST-------- 456
             + L     + +    L  S       +G+      +      E      +        
Sbjct: 268 AVEYLTNCHDYQL--PFLHKSRGVYSFYNGVYIAPEDRFHCFDTEKEPLSDSIVASKFIE 325

Query: 457 ----GTPFVEGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIH 505
                T + +          +          EEV  +    +G  L   N     Q    
Sbjct: 326 NIFDNTHYDDWFDIPT--PHLDSIMIFQQWEEEVQRWLFALLGRMLYPVNQVDSWQVVPF 383

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
            +G+  +GKST++  +   F     +   +++I +            +        V+  
Sbjct: 384 FKGLAATGKSTIILKVIKNFFETVDVGILSNNIERKFG---------ISAFHDKFCVLAP 434

Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
           E   +  I  A+ + M  G+ +   + +   ++E        +  N+     +   +  R
Sbjct: 435 EIKNDLAIEQAEFQSMVSGEDVQVNVKHKKAFAE-EWRVPMALAGNEVPGWADNGGSIQR 493

Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLK 681
           R IV  F KP+ + D    +KL+ K      +   K       K  DV+I    PE  + 
Sbjct: 494 RLIVFEFKKPVRHGDMKLGEKLD-KELPYILRKCNKAYLDLAGKYSDVNIWSVLPEYFIN 552

Query: 682 AKEEERQGTDTYQAWI-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
            +E   + T+  ++++      +GEN          +  E+    + +  K+++      
Sbjct: 553 TREALARATNFIESFMASSEVILGENEICSLGDFKSALREHATTNVMHT-KQLTADVFAG 611

Query: 741 NLKQKG--FIGGIKREKIEKEWKSKRIIKGLKLKP 773
             ++ G  F+G    +   +   ++  I+GL LK 
Sbjct: 612 PFEKYGIKFLGAQTLDYCGQSVHTE-FIQGLSLKS 645


>gi|41057504|ref|NP_957977.1| ORF068 NTPase [Bovine papular stomatitis virus]
 gi|41018820|gb|AAR98425.1| ORF068 NTPase [Bovine papular stomatitis virus]
          Length = 788

 Score =  103 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 95/307 (30%), Gaps = 52/307 (16%)

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK--ELYITKSTGT-----PFVEGEPSQ 467
             +     D     L   +G+LDL TG+ +   +  E   T STG       +     S+
Sbjct: 400 MLVDVSETDVLYDKLPFTNGVLDLATGEFLTGDRAKECVCTVSTGYRFSREEYEAAADSE 459

Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               L   +     +     E    + R +  AL G  K    +   G   +GKST   L
Sbjct: 460 AMRRLVSVIDDIQPNTPENAENRALYERAMSSALCGATK-TVIVFFFGDTMTGKSTSKRL 518

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575
           +       Y+   +               NP +  +   R V  SE  +       ++ +
Sbjct: 519 LHSVLSGLYIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 574

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
              K++T   C+  R  + N         T  I  N        D+A  RR  ++ F   
Sbjct: 575 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 632

Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIP 676
                               + D S   K++  Y      +  ++  + Y        +P
Sbjct: 633 FSSAATRAAAVHNIEYSAVKDMDDSLDAKIQRNYFRYAFLRLLVEWFRKYH-------VP 685

Query: 677 EVCLKAK 683
           +V L A 
Sbjct: 686 QVSLDAT 692


>gi|94266791|ref|ZP_01290456.1| RecA-family ATPase-like [delta proteobacterium MLMS-1]
 gi|93452534|gb|EAT03120.1| RecA-family ATPase-like [delta proteobacterium MLMS-1]
          Length = 700

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 56/236 (23%), Gaps = 24/236 (10%)

Query: 2   PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFV 57
              Q    A +       + P     KRP     +++     E+I       P    GF 
Sbjct: 40  AKNQALNAALEYAAKDRPVFPCDPATKRPLTKNGFKDATTDPEQIKTWWRKHPRALIGFP 99

Query: 58  CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
            G     L   D+D      +    +        P     + P+    F  +   +K   
Sbjct: 100 TG---NGLMVLDVDPPHGPESLAALEA--KHGPLPATLEQRSPRGRHLFLASNHDVKISA 154

Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
                   LDI   G Y +         K Y WT               E  ++ + +  
Sbjct: 155 NK--LGPGLDIRAKGGYVIVSPSVNSEGKAYQWTNKAEPAP------APEWLIDAISEAT 206

Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
              T                    N +   R I             G+ + W    
Sbjct: 207 TRATPTPKTGDGRPGDDF------NERGDIRPILERHGWTF-FRTAGAFERWTRPG 255


>gi|23012376|ref|ZP_00052477.1| hypothetical protein Magn03006897 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 543

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 77/247 (31%), Gaps = 36/247 (14%)

Query: 10  AKQAIHNGFKLIPLR------LGD--KRPQRLGKWEEQLLSSEKIDKL----PACGFGFV 57
           A   +  G+ + P         G            + +L +  ++ +L    P+     +
Sbjct: 50  APDLVALGWSVFPQNRDDCRGPGKVHGTSFPWKPLQTRLPTDRELRELVTFCPSHNVAGI 109

Query: 58  CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKEGIKKK 116
            G       A D+D  D   +    +  + + G TP  R+G+ P+I++ +R       K 
Sbjct: 110 LGPSSAHTCAIDVDVGDLDLSLAIVERADSILGYTPFRRVGRDPRIILIYREAGAATAKS 169

Query: 117 KTTESTQ---------GHLDILGCGQYFVAYNIHPKTKKEYTWTT-PPHRFKVEDTPLLS 166
                 +           ++IL  G     + +H KT K + W    PH    E+   ++
Sbjct: 170 DALIRQKKLWLQGPEGHMIEILARGAPVTFFGLHHKTGKYFLWLDRSPHVAPPEEAREVT 229

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
            + ++        +        +  +              + E    +         G  
Sbjct: 230 RDQIDEFLDAVNALRPLKAGTGRLAMAET--------WTYDAEAGLHVPAEL-----GGE 276

Query: 227 DEWIPVV 233
           DEW  + 
Sbjct: 277 DEWNEID 283


>gi|289183832|ref|YP_003457373.1| NTPase [Pseudocowpox virus]
 gi|288804304|gb|ADC53969.1| NTPase [Pseudocowpox virus]
          Length = 787

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 85/290 (29%), Gaps = 45/290 (15%)

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-------PFVEGEPSQ 467
             +     D+    L   +G+LDL TG+ +   +      +  T        +     S+
Sbjct: 399 MLVEISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYRFSREEYEAAADSE 458

Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               L   +           E    + R +  AL G  K    +   G   +GKST   L
Sbjct: 459 AMRRLVSVIDDIQPDTPENAENRALYERAMSSALCGNTK-TVIVFFYGETMTGKSTSKRL 517

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575
           +  A G  ++   +               NP +  +   R V  SE  +       ++ +
Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACSNARKLRS 573

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
              K++T   C+  R  + N         T  I  N        D+A  RR  ++ F   
Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631

Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666
                                 D     K++  Y      +  ++    Y
Sbjct: 632 FSSSATRAAAAHNIEYSAVKEMDEGLDTKIQRNYFRYAFLRLLVQWFGKY 681


>gi|288804172|gb|ADC53838.1| NTPase [Pseudocowpox virus]
          Length = 787

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 85/290 (29%), Gaps = 45/290 (15%)

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-------PFVEGEPSQ 467
             +     D+    L   +G+LDL TG+ +   +      +  T        +     S+
Sbjct: 399 MLVEISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEYEAAADSE 458

Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               L   +           E    + R +  AL G  K    +   G   +GKST   L
Sbjct: 459 AMRRLVSVIDDIQPDTPENAENRALYERAMSSALCGNTK-TVIVFFYGETMTGKSTSKRL 517

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575
           +  A G  ++   +               NP +  +   R V  SE  +       ++ +
Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACSNARKLRS 573

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
              K++T   C+  R  + N         T  I  N        D+A  RR  ++ F   
Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631

Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666
                                 D     K++  Y      +  ++    Y
Sbjct: 632 FSSSATRAAAAHNIEYSAVKEMDEGLDTKIQRNYFRYAFLRLLVQWFGKY 681


>gi|281419301|ref|ZP_06250316.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
 gi|281406921|gb|EFB37184.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
          Length = 268

 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 67/250 (26%), Gaps = 34/250 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G ++      E+I K  
Sbjct: 7   DAALKYAEANIPVIPLHWICEDGSCSCKKGQQCDSKGKHPLYTGWYKNSTADMEQIKKWW 66

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T+  L  T     G+  +    F
Sbjct: 67  TKTPNANIGIPTGEKSGWLV-LDVDDGGDETLSALESTYGNLPDTVTAVTGRGGR-HYIF 124

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           +  +   +            DI   G   V       +   Y W      F   +     
Sbjct: 125 KYPEG--RSIPNKTKFASGFDIRSNGGLIVVSPSVHISGNRYEWIKDHSLFD-RNPAEAP 181

Query: 167 EEDVEYLFK--------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218
           E  ++ + +            I   + +  ++   +        R  T   I A L    
Sbjct: 182 EWLLKLMERVEVLLTPFEGSSIAAEIKEGSRNSTLTSLAGTMRVRGMTEESIYAALLAEN 241

Query: 219 EEFYNGSHDE 228
               N   DE
Sbjct: 242 NARCNPPLDE 251


>gi|73661353|ref|YP_300134.1| hypothetical protein SSP0044 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493868|dbj|BAE17189.1| hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 546

 Score =  101 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 119/353 (33%), Gaps = 22/353 (6%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
           + T+       +  +     ++F   ++        +              + +   + S
Sbjct: 79  NDTILVEMMISIFHIKRFDSELFVFKDKGWQKVNEDELQGLISKMIQVL--LVDYKPSLS 136

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKELYIT-KSTGTP 459
             +++  G   SI  + L  + +++G    + +L+     G  +K      +  +   + 
Sbjct: 137 ILKNVVVGLQNSIDVEELVENKQYIGCGHNMFNLDAFEVVGNSIKIFPATRLNLELVKSD 196

Query: 460 FVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
            +  +    F   +  +     ++  +  + + + L    K +R + + G   +GKS  +
Sbjct: 197 VITEKTPPHFNRYMLEFANFDSDLQYFLFQHIAVLLTANTKYRRALLLYGGAKNGKSVFI 256

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AA 576
           NL++  F ++ +++   +++                 L+G +++   E  E+        
Sbjct: 257 NLVRSFFYSEDIVSKALNELQG---------RFDKESLVGKKLMASDEIGESRIQEKIVN 307

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKP 635
            +K++   + +      G T  E+          N  L   +    A  RR  VIP +  
Sbjct: 308 DLKKLVSVEPVHVDRK-GKTQVETTLDLKLAFGTNARLNFPSAHAKALERRIAVIPCEYY 366

Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           +   D    +KL+     E   + +   K  +   ++    +   +   +   
Sbjct: 367 VEKADPDLIEKLQ-DEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDWLN 418


>gi|113927238|emb|CAL22882.1| hypothetical protein ZH07 [Staphylococcus aureus]
          Length = 539

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 115/364 (31%), Gaps = 23/364 (6%)

Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
           Y             L ++   +   +     ++F             +            
Sbjct: 70  YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSELFIFKVNGWQKINGDELQGLISKMIQVL 128

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKE 449
             + +   + ST +++  G   S   + L  + R++G  + + DL T       +    +
Sbjct: 129 --LVDYKPSLSTLKNVVDGLQKSTDVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPK 186

Query: 450 LYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
             +  S  T  V  +     F   +       +++  +  +   + L    K +R + + 
Sbjct: 187 TRLNLSLSTNDVITDKIPPYFKQYMLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILY 246

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G   +GKS  + L+K  F +  +++   +++                 L+G RI+   E 
Sbjct: 247 GGAKNGKSVYIELVKSFFYSNDIVSKTLNELGG---------RFDKESLIGKRIMASDEV 297

Query: 568 NENDEINAAK--IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWW 624
            + +   A     K++   + + A    G T  E           N  L   +    A  
Sbjct: 298 GKANIDEATVNDFKKLLSVEPIHADRK-GRTQVEVTLDLKLIFNTNAVLNFPSSHAKALE 356

Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
           RR  VIP +  +   D    +KL+     E   + +   K  +   ++    +   +   
Sbjct: 357 RRIAVIPCEYYVEKADPDLIEKLQ-DEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISH 415

Query: 685 EERQ 688
           +   
Sbjct: 416 DWLN 419


>gi|213028477|ref|ZP_03342924.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 389

 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 64/189 (33%), Gaps = 18/189 (9%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  TG      K  ++       F            +  F   +     
Sbjct: 209 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 268

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 269 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 328

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
           +   R             L+G  ++ + +  +     A  +K +TGGD ++    Y + Y
Sbjct: 329 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 378

Query: 598 SESPASFTP 606
           S    +   
Sbjct: 379 STHIPAVIL 387


>gi|168032222|ref|XP_001768618.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680117|gb|EDQ66556.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 330

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 93/273 (34%), Gaps = 34/273 (12%)

Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFT-----RCVGMALLG 496
                  EL  +K     + +   +      +     + +++D+       + +     G
Sbjct: 51  CVCPKNPELITSKIFCVIYDDKFITDVCESYMETIEPATKIIDFIQSSDNRKKMMYTCAG 110

Query: 497 GNKAQRFIHI-------RGVGGSGKSTLMNLIKYA-FGNQYVINAEASDIMQNRPPEAGK 548
               + F  +        G+     +   +  +     +   ++   S +  +   EA  
Sbjct: 111 MLYKEGFEELLDSKRDVIGMKSGVYNFTEDRFRMMELDDYITLSTRISFVPLDYNSEATN 170

Query: 549 ANPSL----IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
               L      L G  I ++ E +E +++N + +K++TG D +  R  Y       P + 
Sbjct: 171 EVLDLLAKLAMLKGRLIALVQEPDEGNKLNLSVMKEITGNDSLYVRGLYKEGTI-IPQTA 229

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-------------RDASFAQKLETKY 651
              ++ N+   +   D A W R  ++PF     +             +D +F+ K+   +
Sbjct: 230 KFILIANRIPQMSMFDKAVWSRIRIMPFVSTFVDKIELSHDLLTTHLKDINFSNKIHF-F 288

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
                K  ++  K Y++ GL  + P       E
Sbjct: 289 APVFMKLVIEEYKQYLTYGL--EEPNEVKDCTE 319


>gi|313576825|gb|ADR67001.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp.
           pneumoniae]
          Length = 271

 Score =  101 bits (250), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 92/290 (31%), Gaps = 51/290 (17%)

Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
           M L      Q F+ + G GGSGKS L  +     G     +A    +   R         
Sbjct: 1   MVLANRYDWQLFLDVTGTGGSGKSILAEIATLLAGEDNATSATIETLESPR--------- 51

Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
               L+G  ++ + + ++     A  +K +TGGD ++    Y + YS          V N
Sbjct: 52  ERAALIGFPLIRLPDQDKWSGDGAG-LKAITGGDAVSVDPKYRDAYSAYIP-AVILAVNN 109

Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
             +   N      RR ++I F + I    RD     K+         +  ++        
Sbjct: 110 NPMRFTNRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVIVRQLMQ-------- 160

Query: 670 GLDVDIPEVCLKAKEEE---------RQGTDTYQAW---IDDCCDIGENL--------WE 709
                 P       + +         ++  D    +   +++  + G            +
Sbjct: 161 --RFRDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEELPEPGGMYMGNANIVPRQ 218

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
               L  +Y  Y E             T++L +  KG    +KR + E  
Sbjct: 219 PRLYLYHAYLVYMEAHG-------YKNTLSLTMFGKGLSSMLKRVRPELR 261


>gi|228475608|ref|ZP_04060326.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|228270390|gb|EEK11825.1| conserved hypothetical protein [Staphylococcus hominis SK119]
          Length = 535

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 58/384 (15%), Positives = 122/384 (31%), Gaps = 34/384 (8%)

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM-------KEDVFDLSEEPE 374
               +   T   Y+   +N+Y +    +K   + +  + +        +  +F  S+E  
Sbjct: 52  EELNFEISTDINYR---SNIYGYYGIKNKPKDTDLVQMATQILNVKRFESKLFMFSKEGW 108

Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
               +S+       T      + + +  +S  +S+  G   S   D L    R++G    
Sbjct: 109 QKLDDSELRSIVRKTIQVI--LIDYTPTQSELKSVIDGMKESADIDKLVEDERYIGCHRY 166

Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPS-----QEFLDLVSGYFE-SEEVMDYFTR 488
           + DLE  Q    + +++          + +         F   +S      +++  +  +
Sbjct: 167 LFDLEQFQVTNNSIDIFPKTRLDVELDKSDSITSSIPPHFDKYISELANFDDDLRYFLMQ 226

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
              + L    K +R +   G   +GKS  + L++  F  Q V++   +++          
Sbjct: 227 HTAVLLTSNRKLRRGLIFYGTANNGKSVYIKLMRAFFYRQDVVSKTLNELGG-------- 278

Query: 549 ANPSLIRLMGSRIVIISETNENDEINA---AKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                  L+G R++   E  +   I+       K++   + +      G    E      
Sbjct: 279 -RFDKESLIGKRLMASDEIGK-ARIDEKTVNDFKKLLSVEPIHVDRK-GRRQVEVTLDLK 335

Query: 606 PFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
                N  L        A  RR  VIP D  +   D     KL          + +   K
Sbjct: 336 LLFNTNAVLNFPPEHAKALERRIAVIPCDYYVEKADIDLNDKL-KSEKKHIFLYLMYVYK 394

Query: 665 AYISKGLDVDIPEVCLKAKEEERQ 688
             +   +D    E   +   +   
Sbjct: 395 QMMIDDIDRIENEKVTELTHDWLN 418


>gi|254432090|ref|ZP_05045793.1| Pas55 [Cyanobium sp. PCC 7001]
 gi|197626543|gb|EDY39102.1| Pas55 [Cyanobium sp. PCC 7001]
          Length = 1757

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 108/364 (29%), Gaps = 34/364 (9%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF---ES 479
           D     +   +G  +L T +    + E   T +    ++ G      L  V        +
Sbjct: 385 DVPPPVVVFGNGTFNLRTRRLEPHSPEHGATYAVDADYLPGAGCPAALQRVIETCYPEGA 444

Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
           E ++    R +   +    +     H  G  G+GK  L+  +              S   
Sbjct: 445 EPIIRAELRWL---IDPSVRYGEVFHHLGDTGTGKGLLVEFLSSLL--------PPSLQA 493

Query: 540 QNRPPEAGKANPSLIRL-MGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNT 596
               P +      L ++  G R++   +       +  +    ++      TAR  Y   
Sbjct: 494 TAAHPASLDTPEKLHQIVRGRRLLQFPDCPARLRNSGHSGLFYELVENKPQTARRLYSAE 553

Query: 597 YSESPA-SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE--TKY-- 651
             E+   +    I     L   +  D + RR + +   +   + D      L   T    
Sbjct: 554 AEEARPFNVRCIIASVAPLQFSDGRDGFLRRCLTLQTLQRSGDPDPMLRSDLIGSTPEHR 613

Query: 652 --TLEAKKWFLKGVKAYISKGLDVDIPE-VCLKAKEEERQGTDTYQAWIDDCCD---IGE 705
               +A  W +      +   L  + PE +    + E     D+   + D C     +G 
Sbjct: 614 VIRSQAVSWAMSMPTFELEAILSKNDPEGLLRLGEAEAAAAGDSVSQFADACLVPHPLGP 673

Query: 706 NLWEESHSL---AKSYSEYREQELNYDRKRISTRTVTLNLKQ-KGFIGGIKREKIEKEWK 761
           +   +   L    ++Y  + +         +        L++  G    + R K  +E  
Sbjct: 674 DAEVDEADLGQMFEAYRGWCKYAG--VEHAMQLSNFRGQLRRVLGPGRCLPRRKESREEA 731

Query: 762 SKRI 765
             + 
Sbjct: 732 KAQG 735


>gi|290343635|ref|YP_003495002.1| hypothetical protein OTV1_163 [Ostreococcus tauri virus 1]
 gi|260161050|emb|CAY39751.1| hypothetical protein OTV1_163 [Ostreococcus tauri virus 1]
          Length = 647

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 51/459 (11%), Positives = 132/459 (28%), Gaps = 54/459 (11%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
           +   ++           F + +      +   +   W N   R     +     + ++ L
Sbjct: 201 EEIRTVEGHRTRAWRPKFTIEQFVYSLAQKDDNFEVWKNFTSRGTVFRD--VIDNMSKCL 258

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
           +A          +         ++G+   +     +   +          F   +P+   
Sbjct: 259 DAQFP------EITKRRHVWSFKNGVFVGKEWIPDRGVYDCCFYSYDSQEFRCLDPTIIA 312

Query: 470 LDLVSGYFESEEVMDYFTR--------------------CVGMALLGGNK--------AQ 501
                  F+    ++ +                           + G            Q
Sbjct: 313 CKYFDQQFDDFSHLENWQDIPTPWFDSVLKYQKFEDEVCHWAYVMGGRLCFDVGELDGWQ 372

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
                +G+  SGKSTL+  +   F     +   +++I +            L  +  + +
Sbjct: 373 VIPFFKGIARSGKSTLITKVFKKFYENEDVGTLSNNIEKKFG---------LSAIKDAFM 423

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
            I  E   +  +  A+ + M  G+ ++  +    T      +    +  N+    ++   
Sbjct: 424 FIAPEVKGDLALEQAEFQSMVSGEDVSVAVKNK-TAVSIEWNVPGVLGGNEVPNWKDNSG 482

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK----AYISKGLDVDIPE 677
           +  RR +   F K + + D    +KL            +K        Y  K +   +PE
Sbjct: 483 SVLRRILPWNFSKQVRDADPQLDEKLNR-ELPIILLKCVKAYLDYSNKYRDKDIWNVVPE 541

Query: 678 VCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
              K +++      T   +++      G+ L+       + ++++ +   N  + + +  
Sbjct: 542 YFKKIQKQVAMVASTLHNFLESTNIVFGKELFVPQTLFIQVFNQHCQAN-NLGKPKFNPD 600

Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKR-IIKGLKLKPA 774
                   +      +    +     K+ II GL +   
Sbjct: 601 FYAGPFSSRDIEVREEVVTYKGRTYPKQPIIYGLDVVEE 639


>gi|70725056|ref|YP_251970.1| hypothetical protein SH0055 [Staphylococcus haemolyticus JCSC1435]
 gi|67003802|gb|AAY60815.1| hypothetical protein [Staphylococcus aureus]
 gi|68445780|dbj|BAE03364.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
 gi|166197602|dbj|BAG06211.1| hypothetical protein [Staphylococcus aureus]
 gi|221148482|gb|ACL99843.1| hypothetical protein [Staphylococcus pseudintermedius]
 gi|238768514|dbj|BAH66826.1| hypothetical protein [Staphylococcus aureus]
 gi|283469276|emb|CAQ48487.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 538

 Score =  100 bits (249), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 110/340 (32%), Gaps = 22/340 (6%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
            +     ++F   ++        +              + +   + ST +++  G   S 
Sbjct: 92  HIKRFDSELFVFKDKGWQKVSEDELQGLISKMIQVL--LVDYKPSLSTLKNVVDGIQKST 149

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-----QEFLDL 472
             + L    +++G    + +L+T + V    E++            +         F   
Sbjct: 150 DIEKLVEHRQYIGCGRNMFNLKTFKVVDNDLEIFPKTRLDLELDINDTITDKIPPNFKQY 209

Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           +        ++  +  + + + L    K +R + + G   +GKS  + L+K  F +  ++
Sbjct: 210 MLELANYDHDLQYFLFQHMAVLLTADTKLRRGLFLYGTAKNGKSVYIKLVKSFFYSNDIV 269

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK--IKQMTGGDCMTA 589
           +   +++                 L+G RI+   E  + +   A     K++   + + A
Sbjct: 270 SKTLNELGG---------RFDKESLIGKRIMASDEVGKANIDEATVNDFKKLLSVEPIHA 320

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKLE 648
               G T  E           N  L   +    A  RR  VIP +  +   D    +KL+
Sbjct: 321 DRK-GRTQVEVTLDLKLIFNTNAVLNFPSSHAKALERRIAVIPCEYYVEKADPDLIEKLQ 379

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
                E   + +   K  +   ++    +   +   +   
Sbjct: 380 -DEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDWLN 418


>gi|160932537|ref|ZP_02079927.1| hypothetical protein CLOLEP_01375 [Clostridium leptum DSM 753]
 gi|156868496|gb|EDO61868.1| hypothetical protein CLOLEP_01375 [Clostridium leptum DSM 753]
          Length = 1383

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 121/350 (34%), Gaps = 30/350 (8%)

Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIH 505
            K+ Y +K    P  EG     +  L+S  +  EE        +G  + G +K  Q+F+ 
Sbjct: 122 NKKDYASKRLNYPLEEGAT-DAWNKLMSTIYSEEE-RTKIEWAIGSIVCGESKKLQKFMV 179

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G  G+GKST++N+++  F   Y +          +   +   + +L     + +V I 
Sbjct: 180 LYGAAGTGKSTVLNIVQQLFEGYYSV-------FDAKALGSSSNSFALEAFKTNPLVAIQ 232

Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
              +   I +  ++  +   + MT    + +TY+        F+  NK + + +      
Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYAN-RFKCFLFMGTNKPVKITDAKSGLI 291

Query: 625 RRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
           RR I + P    ++ ++     K              +          D  IP   L A 
Sbjct: 292 RRLIDVSPSGNKLSPKEYKAVTKQIEFELGAIAYHCQEVYLE-NPGRYDDYIPVTMLGAS 350

Query: 684 EE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
            +      D+Y  +  +    G  L        + Y  Y ++         S R     L
Sbjct: 351 NDFYNFIIDSYHVFKKED---GTTLKASW----EMYKTYCDEAK--VTFPFSQRIFKEEL 401

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKL-----KPAFESVDDNSNIIDF 787
           K   F    +R  ++   + +    G +      K   E  +    +I+F
Sbjct: 402 KN-YFRDYKERFNLDDGTRVRSYYIGFRTEKFEDKTLTEQDEPEHKLIEF 450


>gi|153810985|ref|ZP_01963653.1| hypothetical protein RUMOBE_01376 [Ruminococcus obeum ATCC 29174]
 gi|149832873|gb|EDM87956.1| hypothetical protein RUMOBE_01376 [Ruminococcus obeum ATCC 29174]
          Length = 196

 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 49/172 (28%), Gaps = 9/172 (5%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
           KE A      G  + PL   DK P  +G  +        I++     P    G   G   
Sbjct: 2   KEWALHYAEMGLAVFPLVCRDKVPAVVGGCKVATTERTTIERWWDKNPQYNIGIATGNKS 61

Query: 63  QPLYAFDIDS---KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
             L   D+D    K     +  +D        P        +    +      +      
Sbjct: 62  SGLVVIDLDVDKNKGIDGYDVLRDWQNKHGKLPETWQSITGRGGYHYFYKDAIVH--SNR 119

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
                 +DI G G Y VA          Y W   P  +++     +  + ++
Sbjct: 120 VGLYEGVDIRGEGGYIVAPPSVHPNGNIYEWEQGPEEYEIAQVDNIVNDFLK 171


>gi|49257044|dbj|BAD24833.1| hypothetical protein [Staphylococcus aureus]
          Length = 547

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 113/365 (30%), Gaps = 25/365 (6%)

Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
           Y             L ++   +   +     ++F             +            
Sbjct: 70  YSYFGIQKKPNDTVLMEMMIEVF-HIKRFNSELFVFKANGWQKINKDELQGLVSKMIQVL 128

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
               + S  +ST +++  G   S   + L    +++G    + +L T + VK   +++  
Sbjct: 129 FIDYKPS--QSTLRNVVDGLQKSTDVEELVEDKQYIGCGPNMFNLNTFEVVKNCIDIFPK 186

Query: 454 KSTGTPFVEGEPSQE-----FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
                   +G+   E     F   +        ++  +  +   + L    K +R + + 
Sbjct: 187 TRLNIEIDKGDVINENIPDHFSKYMLELANFDTDLKHFLIQHTAILLTANTKLRRGLILH 246

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G   +GKS  + L+K  F    VI+   +++                 L+G R++   E 
Sbjct: 247 GAANNGKSVYIKLLKSFFHQNDVISKTLNELGG---------RFDKESLIGKRLMASDEI 297

Query: 568 NENDEINAAK---IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAW 623
            E   IN       K++   + +      G T  E           N  L   +    A 
Sbjct: 298 GE-ARINEKVVNDFKKLLSVEPIHVDRK-GQTQVEVTLDLKLIFNTNAVLNFPSEHAKAL 355

Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
            RR  VIP +  +   D    +KL+     E   + +   K  +   ++    +   +  
Sbjct: 356 ERRIAVIPCEYYVEKADPDLIEKLQ-DEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEIS 414

Query: 684 EEERQ 688
            +   
Sbjct: 415 HDWLN 419


>gi|313768154|ref|YP_004061585.1| hypothetical protein BpV1_155c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599761|gb|ADQ91782.1| hypothetical protein BpV1_155c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 650

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/453 (13%), Positives = 132/453 (29%), Gaps = 55/453 (12%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           + +  + E      +       W N   R      N   +      +      I      
Sbjct: 216 KQIETIQEYVYGVAQKETRYELWKNLSSRGSA--YNDVIRHLTHCKDMQFPEII------ 267

Query: 424 SSSRFLGEQDGIL--------------DLETGQKVKP---TKELYITKSTGTPFVEGEPS 466
            +      ++GI               +  T +  +     + +   K     F   E  
Sbjct: 268 KNRHVWSFKNGIFIGKEWSAQTGLYESNFYTYESREFKNLDQTIVSCKYFDKEFTNYEDL 327

Query: 467 QEFLD----LVSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKS 515
           + + D          E       V  +     G    G N     Q    ++G+  SGKS
Sbjct: 328 ENWYDIPTPFFQSVLEYQKFDSNVSKWMYVMGGRLCFGVNDIDTWQIIPFLKGIARSGKS 387

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
           TL+  +   F N   +   ++++ +            L  +  + + I  E   + ++  
Sbjct: 388 TLITKVFRKFYNADDVRTLSNNVEKKFG---------LSSIYDAFMFIAPEVKGDLQLEQ 438

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           A+ + +  G+ ++  + +         +    +  N+    ++   +  RR +   F K 
Sbjct: 439 AEFQSIVSGEDVSIAVKHEKA-KSFEWTTPGILGGNEVPNWKDNSGSVLRRILTWNFGKQ 497

Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLKAKEEERQGTD 691
           + + D +   KL+        +  ++    Y  K  D DI    PE     +++      
Sbjct: 498 VKDADPTLEYKLD-SELPVILQKCIRAYLEYAQKYADRDIWNVVPEYFKTVQKQVATVAS 556

Query: 692 TYQAWIDDC-CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
           T + ++       G++L          ++ + +   N  + R +         Q+     
Sbjct: 557 TLENFMQSTGVKYGKDLCCPQKDFVALFNSHCQAN-NLGKPRFTQDFYVGPFSQRDIEVR 615

Query: 751 IKREKIEKEWKSKR--IIKGLKLKPAFESVDDN 781
                  K     R   I GL +         N
Sbjct: 616 EINNLTYKGRVCPRQPFIFGLDIVDEQSIQYSN 648


>gi|163955160|ref|YP_001648264.1| hypothetical protein OsV5_188r [Ostreococcus virus OsV5]
 gi|163638609|gb|ABY27968.1| hypothetical protein OsV5_188r [Ostreococcus virus OsV5]
          Length = 647

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/459 (11%), Positives = 132/459 (28%), Gaps = 54/459 (11%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
           +   ++           F + +      +   +   W N   R     +     + ++ L
Sbjct: 201 EEIRTVEGHRTRAWRPKFTIEQFVYSLAQKDDNFEVWKNFTSRGTVFRD--VIDNMSKCL 258

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
           +A          +         ++G+   +     +   +          F   +P+   
Sbjct: 259 DAQFP------EITKRRHVWSFKNGVFVGKEWIPDRGVYDCCFYSYESQEFRCLDPTIIA 312

Query: 470 LDLVSGYFESEEVMDYFTR--------------------CVGMALLGGNK--------AQ 501
                  F+    ++ +                           + G            Q
Sbjct: 313 CKYFDQQFDDFSHLENWQDIPTPWFDSVLKYQKFEDEVCHWAYVMGGRLCFDVGELDGWQ 372

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
                +G+  SGKSTL+  +   F     +   +++I +            L  +  + +
Sbjct: 373 VIPFFKGIARSGKSTLITKVFKKFYENEDVGTLSNNIEKKFG---------LSAIKDAFM 423

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
            I  E   +  +  A+ + M  G+ ++  +    T      +    +  N+    ++   
Sbjct: 424 FIAPEVKGDLALEQAEFQSMVSGEDVSVAVKNK-TAVSIEWNVPGVLGGNEVPNWKDNSG 482

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK----AYISKGLDVDIPE 677
           +  RR +   F K + + D    +KL            +K        Y  K +   +PE
Sbjct: 483 SVLRRILPWNFSKQVRDADPQLDEKLNR-ELPIILLKCVKAYLDYSNKYRDKDIWNVVPE 541

Query: 678 VCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
              K +++      T   +++      G+ L+       + ++++ +   N  + + +  
Sbjct: 542 YFKKIQKQVAMVASTLHNFLESTNIVFGKELFVPQTLFIQVFNQHCQAN-NLGKPKFNPD 600

Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKR-IIKGLKLKPA 774
                   +      +    +     K+ II GL +   
Sbjct: 601 FYAGPFSSRDIEVREEVVTYKGRTYPKQPIIYGLDVVEE 639


>gi|41057131|ref|NP_957845.1| ORF068 NTPase [Orf virus]
 gi|41018688|gb|AAR98293.1| ORF068 NTPase [Orf virus]
          Length = 787

 Score = 99.6 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 87/290 (30%), Gaps = 45/290 (15%)

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-------EGEPSQ 467
             +     D+    L   +G+LDL TG+ +   +      +  T +            S+
Sbjct: 399 MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAAADSE 458

Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               L   ++          E    + R +  AL G  K    +   G   +GKST   L
Sbjct: 459 AMRRLVGVINDIQPDTPENAENRALYERAMSSALCGATK-TVIVFFYGDTMTGKSTSKRL 517

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575
           +  A G  ++   +               NP +  +   R V  SE  +       ++ +
Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 573

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
              K++T   C+  R  + N         T  I  N        D+A  RR  ++ F   
Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631

Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666
                                 D S   K++  Y      +  ++    Y
Sbjct: 632 FSSAATRAAAAHNVEYSAVKEMDESLDTKIQRNYFRYAFLRLLVQWFGKY 681


>gi|325073819|gb|ADY76872.1| PP212 [Orf virus]
          Length = 787

 Score = 99.2 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 86/290 (29%), Gaps = 45/290 (15%)

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-------EGEPSQ 467
             +     D+    L   +G+LDL TG+ +   +      +  T +            S+
Sbjct: 399 MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAAADSE 458

Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               L   +           E    + R +  AL G  K    +   G   +GKST   L
Sbjct: 459 AMRRLVGVIDDIQPDTPENAENRALYERAMSSALCGATK-TVIVFFYGDTMTGKSTSKRL 517

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575
           +  A G  ++   +               NP +  +   R V  SE  +       ++ +
Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 573

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
              K++T   C+  R  + N         T  I  N        D+A  RR  ++ F   
Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631

Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666
                                 D S   K++  Y      +  ++    Y
Sbjct: 632 FSSSATRAAAAHNVEYSAVKEMDESLDTKIQRNYFRYAFLRLLVQWFGKY 681


>gi|30230665|gb|AAP21119.1| D5R-like protein [Orf virus]
          Length = 781

 Score = 99.2 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 86/290 (29%), Gaps = 45/290 (15%)

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-------EGEPSQ 467
             +     D+    L   +G+LDL TG+ +   +      +  T +            S+
Sbjct: 393 MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAAADSE 452

Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               L   +           E    + R +  AL G  K    +   G   +GKST   L
Sbjct: 453 AMRRLVGVIDDIQPDTPENAENRALYERAMSSALCGATK-TVIVFFYGDTMTGKSTSKRL 511

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575
           +  A G  ++   +               NP +  +   R V  SE  +       ++ +
Sbjct: 512 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 567

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
              K++T   C+  R  + N         T  I  N        D+A  RR  ++ F   
Sbjct: 568 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 625

Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666
                                 D S   K++  Y      +  ++    Y
Sbjct: 626 FSSSATRAAAAHNVEYSAVKEMDESLDTKIQRNYFRYAFLRLLVQWFGKY 675


>gi|282892588|ref|ZP_06300861.1| hypothetical protein pah_c272o027 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497712|gb|EFB40081.1| hypothetical protein pah_c272o027 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 159

 Score = 99.2 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 5/164 (3%)

Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
           ++ N+   + +   A   RY+V+       +R+ +   +           W LKG+K   
Sbjct: 1   MMSNELPDLTDSSGALANRYLVLNLKTSWLHREDTGLLERLKMELSGILLWALKGLKRLN 60

Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELN 727
             G     P+  L+  EE ++ +     ++D+ C+          SL  +++++      
Sbjct: 61  ENG-HFIQPKASLETIEELKELSSPIMVFVDEVCNFEPKACTSIKSLFIAWNQWCTSNG- 118

Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
              K+ +T++   + K   F    KR    +E K +    G+ L
Sbjct: 119 --YKKGTTQSFGKSFKAA-FPEIKKRRLSFEEGKREWCYIGITL 159


>gi|313844134|ref|YP_004061797.1| hypothetical protein OlV1_165c [Ostreococcus lucimarinus virus
           OlV1]
 gi|312599519|gb|ADQ91541.1| hypothetical protein OlV1_165c [Ostreococcus lucimarinus virus
           OlV1]
          Length = 647

 Score = 99.2 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/452 (11%), Positives = 125/452 (27%), Gaps = 72/452 (15%)

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
             +   SI  F+ S+ +   D                 W +   R     +     + ++
Sbjct: 213 AWQPKFSIEQFIYSLAQKDDDFIT--------------WKHFTSRGSVFRD--VIDNLSK 256

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
             +A          +         ++G+   +     +   +          F   +P+ 
Sbjct: 257 CHDAQFP------EITKRRHVWSFKNGVFVGKEWIPDRGVYDCCFYPYDSREFRCLDPTI 310

Query: 468 EFLDLVSGYFESEEVMDYFTRC--------------------VGMALLGGNK-------- 499
                    F+    ++ +                           + G           
Sbjct: 311 IACKYFDQQFDDFSHVERWQDIPTPWFDSILKYQQFEDEVCNWAYVMGGRLCFDIGELDG 370

Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
            Q     +G+  SGKSTL+  +   F     +   +++I +            L  +  S
Sbjct: 371 WQIIPFFKGIARSGKSTLITKVFKKFYENEDVGTLSNNIEKKFG---------LSAIKDS 421

Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
            + I  E   +  +  A+ + M  G+ ++  +    T      +    +  N+    ++ 
Sbjct: 422 FMFIAPEVKGDLALEQAEFQSMVSGEDVSVAVKNK-TAVSIEWTVPGVLGGNEVPNWKDN 480

Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK----AYISKGLDVDI 675
             +  RR +   F K + + D    +KL            +K        Y  K +   +
Sbjct: 481 SGSVLRRILPWNFSKQVRDADPQLDEKLNR-ELPIILLKCIKAYLDYSNKYRDKDIWNVV 539

Query: 676 PEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
           P+   K +++      T   +++      G+ L+       + ++++ +         + 
Sbjct: 540 PDYFKKIQKQVAMVASTLHNFLESTNIVFGKELFVPQKLFIQVFNQHCQANN------LG 593

Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
                 +     F       + E      R+ 
Sbjct: 594 KPKFNQDFYAGPFSSRDIEVREEVVNYKGRVY 625


>gi|228475778|ref|ZP_04060496.1| conserved hypothetical protein [Staphylococcus hominis SK119]
 gi|228270560|gb|EEK11995.1| conserved hypothetical protein [Staphylococcus hominis SK119]
          Length = 539

 Score = 98.8 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/411 (11%), Positives = 124/411 (30%), Gaps = 28/411 (6%)

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
            T    ++ ++       + +++  ++   +I K   +         Y            
Sbjct: 28  LTIPVNNNDEIEETAQGETVYNELIDQLRLNIPKDTDYRPNI-----YSYFGIKKNPNDT 82

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
            L ++   +   +     ++F             +              + +   + ST 
Sbjct: 83  VLMEMMIKVF-HIKRFNSELFVFKANGWQKINGDELQGLISKMIQVL--LVDYKPSLSTL 139

Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKELYITKSTGTPFVE 462
           +++  G   S   + L  +  ++G  + + DL T       +    +  +  S  T  V 
Sbjct: 140 KNVVDGLQKSTDVEELVENEHYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVI 199

Query: 463 GEPSQE-FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
            +     F   +       +++  +  +   + L    K +R + + G   +GKS  + L
Sbjct: 200 TDTIPPYFNQYMLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIEL 259

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAKI 578
           +K  F ++ +++   +++                 L+   ++   E  ++          
Sbjct: 260 VKSFFYSKDIVSKPLNELEG---------RFDKESLIDKSLMASHEIGQSRIQEKIVNDF 310

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIA 637
           K++   + M      G T  E           N  L        A  RR  +IP +  + 
Sbjct: 311 KKLLSVESMHVDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVE 369

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
             D S   KL+     E   + +   +  +   ++        +   +   
Sbjct: 370 KADTSLIDKLQ-SEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITHDWLN 419


>gi|254417833|ref|ZP_05031557.1| Bifunctional DNA primase/polymerase, N-terminal family
           [Brevundimonas sp. BAL3]
 gi|196184010|gb|EDX78986.1| Bifunctional DNA primase/polymerase, N-terminal family
           [Brevundimonas sp. BAL3]
          Length = 590

 Score = 98.8 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 54/223 (24%), Gaps = 30/223 (13%)

Query: 17  GFKLIPLRLGDKRPQR---------------LGKWEEQ---LLSSEKIDKLP-----ACG 53
           G  + PL   DKRP                 L  WE +       +  D+ P        
Sbjct: 14  GIAVFPLMPRDKRPYGGTPGLHGATKDPALVLAWWEGRKALPPKPDATDRRPVFAGSMAN 73

Query: 54  FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
            G   G      +  DID  D   A    +           +   K +  I F     G 
Sbjct: 74  IGIATGQIS-GFWVLDIDGPDGAAALAALEAQHGPLPVTAEQSTGKGR-HILFAWPVAGE 131

Query: 114 KKKKTTEST----QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED 169
              +T  ++       +D+ G G Y VA      + + Y W        V   P      
Sbjct: 132 IGDRTVRNSASKIGPGIDVRGDGGYIVAAPSIHPSGRPYEWAPGRGPVDVGFAP-APAWL 190

Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
           +E       +         +                      A
Sbjct: 191 LELAAPPIVQSAPVQRVAIEGRATRYGEAALAGACRDVETAAA 233


>gi|314055246|ref|YP_004063584.1| hypothetical protein OtV2_151 [Ostreococcus tauri virus 2]
 gi|313575137|emb|CBI70150.1| hypothetical protein OtV2_151 [Ostreococcus tauri virus 2]
          Length = 483

 Score = 98.8 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/459 (10%), Positives = 132/459 (28%), Gaps = 54/459 (11%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
           +   ++        +  F + +      +       W N   R     +     +  + +
Sbjct: 37  EEIRTVEGHRTRAWQPKFTIEQFVYSLAQKDDDFITWKNFTSRGSVFRD--VIDNMTKCV 94

Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
           +A          +         ++G+   +     +   +          F   +P+   
Sbjct: 95  DAQFP------EITKRRHVWSFKNGVFVGKEWIPDRGVYDCCFYPYDSQEFRCLDPTIIA 148

Query: 470 LDLVSGYFESEEVMDYFTRC--------------------VGMALLGGNK--------AQ 501
                  F+    ++ +                           + G            Q
Sbjct: 149 CKYFDQQFDDFSHIERWQDIPTPWFDSVLKYQKFEDEVCNWAYVMGGRLCYDVGELDGWQ 208

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
                +G+  SGKSTL+  +   F     +   +++I +            L  +  S +
Sbjct: 209 VIPFFKGIARSGKSTLITKVFKKFYENEDVGTLSNNIEKKFG---------LSAIKDSFM 259

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
            I  E   +  +  A+ + M  G+ ++  +    T      +    +  N+    ++   
Sbjct: 260 FIAPEVKGDLALEQAEFQSMVSGEDVSVAVKNK-TAVSIEWNVPGVLGGNEVPNWKDNSG 318

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK----AYISKGLDVDIPE 677
           +  RR +   F K + + D    +KL            +K        Y +K +   +PE
Sbjct: 319 SVLRRILAWNFSKQVRDADPQLDEKLNR-ELPIILLKCVKAYLEYSNEYRNKDIWNVVPE 377

Query: 678 VCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
              K +++      T   +++      G+ L+       + ++++ +   N  + + +  
Sbjct: 378 YFKKIQKQVAMVASTLHNFLESTNIVFGKELFVPQKLFIQVFNQHCQAN-NLGKPKFNQD 436

Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKR-IIKGLKLKPA 774
                   +      +    +     K+ +I GL +   
Sbjct: 437 FYAGPFSSRDIEVREEVVNYKGRTYPKQPVIYGLDVVEE 475


>gi|183596366|ref|ZP_02958394.1| hypothetical protein PROSTU_00112 [Providencia stuartii ATCC 25827]
 gi|188023827|gb|EDU61867.1| hypothetical protein PROSTU_00112 [Providencia stuartii ATCC 25827]
          Length = 126

 Score = 98.4 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 12/118 (10%)

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
               W L GV+A+ ++G    +P   + A +E RQ +D    ++ + C +  + +  +  
Sbjct: 3   GILNWALAGVQAWHTEGFKRSLPAAVIAANDEYRQESDLIGEFL-EGCRLEPDAYTAASD 61

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
           L  ++  +  +   +   R++ R  T  + ++GF         +    +K   +G+ L
Sbjct: 62  LYSAFLSFASEGNEW---RMTQRIFTKKMVERGFK--------KIRRNNKASFRGIAL 108


>gi|41018555|gb|AAR98163.1| ORF068 NTPase [Orf virus]
          Length = 787

 Score = 98.4 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 86/290 (29%), Gaps = 45/290 (15%)

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-------EGEPSQ 467
             +     D+    L   +G+LDL TG+ +   +      +  T +            S+
Sbjct: 399 MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAAADSE 458

Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               L   +           +    + R +  AL G  K    +   G   +GKST   L
Sbjct: 459 AMRRLVGVIDDIQPDTPENADNRALYERAMSSALCGATK-TVIVFFYGDTMTGKSTSKRL 517

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575
           +  A G  ++   +               NP +  +   R V  SE  +       ++ +
Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 573

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
              K++T   C+  R  + N         T  I  N        D+A  RR  ++ F   
Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631

Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666
                                 D S   K++  Y      +  ++    Y
Sbjct: 632 FSSSATRAAAAHNVEYSAVKEMDESLDTKIQRNYFRYAFLRLLVQWFGKY 681


>gi|74230780|gb|ABA00585.1| NTPase [Orf virus]
          Length = 787

 Score = 98.4 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 86/290 (29%), Gaps = 45/290 (15%)

Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-------EGEPSQ 467
             +     D+    L   +G+LDL TG+ +   +      +  T +            S+
Sbjct: 399 MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAAADSE 458

Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
               L   +           +    + R +  AL G  K    +   G   +GKST   L
Sbjct: 459 AMRRLVGVIDDIQPDTPENADNRALYERAMSSALCGATK-TVIVFFYGDTMTGKSTSKRL 517

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575
           +  A G  ++   +               NP +  +   R V  SE  +       ++ +
Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 573

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
              K++T   C+  R  + N         T  I  N        D+A  RR  ++ F   
Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631

Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666
                                 D S   K++  Y      +  ++    Y
Sbjct: 632 FSSSATRAAAAHNVEYSAVKEMDESLDTKIQRNYFRYAFLRLLVQWFGKY 681


>gi|124378230|ref|YP_001029426.1| GfV-C21-ORF1 [Glypta fumiferanae ichnovirus]
 gi|124270637|dbj|BAF45562.1| GfV-C21-ORf1 [Glypta fumiferanae ichnovirus]
          Length = 574

 Score = 98.4 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 58/435 (13%), Positives = 131/435 (30%), Gaps = 40/435 (9%)

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF- 367
               K + +   K   L     K +Y     N Y + L  +       N +         
Sbjct: 102 RDIRKVLLAETHK--LLAMKSGKDFYDDIHLNDYEFLLLYNHRYRRERNIIYHYNVTTKL 159

Query: 368 ----DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
               D+ +     +   K       + + +++V + +   +    +         +  L+
Sbjct: 160 WHELDMRKFNWHLSIFYKEILKRKASSHLQEHVPKKTVMINIRNIILDEGENVYCAGSLN 219

Query: 424 SSSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFVEG---EPSQEFLDLVSGYFE 478
           S+ +     +  +D         +  K      + G  +                +  F 
Sbjct: 220 SNFQLFFTNNRTIDTSSIPPITRQIKKFDLAQTTCGWSYDPELSAAYHDSVELYFNKLFP 279

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
            +   D+F   +   L G    + F+ +   G G  G +TL++L+   FG  YV N    
Sbjct: 280 LKCERDWFLSFIARILNGKRDEELFVLLTDEGKGQCGITTLISLLSIVFGKYYVSN--TR 337

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
            ++  +  +    +  +  L   R+++     + D +N   IK +T         +Y N+
Sbjct: 338 IVVDEKSQDNHYIHEGMYDLEKKRLLVADRLTKKDTLNCCVIKALTAESNHIIEWDYDNS 397

Query: 597 YSESPAS--FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-----------F 643
           + +      F   +  N        D  +  R +V P       ++              
Sbjct: 398 HIKYALQTGFIMVVTDNNIPKFDKTDKHFRERMVVCPMRSRFVKQNFETVSMSKENINIH 457

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
                 ++ L      +  +           IP+       + ++        + +  D 
Sbjct: 458 IANKSLQHELSVWSSAVLDLLIKYYNTSVPTIPDSM----ADYKKR-------VYEYFDR 506

Query: 704 GENLWEESHSLAKSY 718
            E+   ESH L++ +
Sbjct: 507 PESHSNESHILSRRF 521


>gi|332088051|gb|EGI93176.1| hypothetical protein SB521682_2984 [Shigella boydii 5216-82]
          Length = 753

 Score = 98.0 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 82/637 (12%), Positives = 167/637 (26%), Gaps = 101/637 (15%)

Query: 14  IHNGFKLIPLRL-GDKRPQRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFD 69
           + + F   P R  G ++   +  W   +++     +    P  G     G     + A D
Sbjct: 44  LSHNFGKTPCRYNGQRKVVGIPDWANYVVTENDFARWSNEPDYGICVRTG---DGVVALD 100

Query: 70  IDSKDEKTANTFKDTFEILHG--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127
            D  D       ++      G   P        K L    ++ +  K+    E     ++
Sbjct: 101 CDINDAGMQEIVRNIILSCLGELPPRRWRADSHKCLYLIAVDGDYRKRGHRLEGENKQIE 160

Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187
           +L  GQ FVA   HP   +   W        ++    ++ E +E L++   +        
Sbjct: 161 LLAKGQQFVACGTHPA-GERIQWDCGLPGEPLK----ITSEQLESLWQRLADNLPVKDSY 215

Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV-VMAVHHETRGSSKG 246
                  +                  LSC           +W+      +   + GS   
Sbjct: 216 TAGAGRQRD-----------------LSCVDPS-ATDDVADWLDANGWTLSVSSDGSRNL 257

Query: 247 KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
           K          S Y           F         K    F    +        GL  + 
Sbjct: 258 KPFRDE-----SEYSNGCSETSIKYF--------PKGTGGFEQGHFKSMHNTDAGLTDAD 304

Query: 307 FSD--AYNKAMFSIY-----KKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
           + +   Y +++F                 +T       +  +Y+     D++        
Sbjct: 305 WLEGYGYTQSLFEDLTVVEDGDKPEFTDINTDMTAHFLERFIYVIEG--DQVCDLSRPPY 362

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
             M +     +             +    T    +      + K  A++           
Sbjct: 363 QCMMDMKSFKNLMAPYQFPPEGKGQPTPATKRWIE-----HRHKKIAETTGYKPGAGRII 417

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
           +  D          G  ++      +  +    +K +            FL+ ++     
Sbjct: 418 ERFD----------GRFEINEFYMPEHPRTADTSKVS-----------TFLNHMAYLVPD 456

Query: 480 EEVMDYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
               ++F   +G  +           +H+    G+G+  +  L++   G           
Sbjct: 457 AWQREFFIARLGWMVQRPERRCPISILHVATAHGTGRGWVSQLMERVLGPWNCARTRMKI 516

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA--AKIKQMTGGDCMTARLNYGN 595
           +  N+  +          L  + +  I E  END+      KI+ +           YG+
Sbjct: 517 LCDNQFHD---------YLYNTLLCTIDEVRENDKRYEVNDKIRDVLTEPRFEVNRKYGS 567

Query: 596 TYSESPASFTPFIVPNKH--LFVRNPDDAWWRRYIVI 630
                          N    L +   D    RR  V+
Sbjct: 568 K-KTMDIYTGFLFYTNHFDALALPEED----RRIAVL 599


>gi|291335538|gb|ADD95149.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C491]
 gi|291335654|gb|ADD95261.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C846]
          Length = 185

 Score = 98.0 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 9/143 (6%)

Query: 45  KIDKLPA-CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL 103
            + + P     G   G+    +   D+D      +         L   PI+   +     
Sbjct: 29  AVKRNPDLQAVGVFTGIRGNGIVILDVD---RNLSKYLNAWGSSLDNAPIITSTKTNAAK 85

Query: 104 IPFRMNKEGIKKKKT---TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
             FR+ +E     K     +   G  +IL  G+  V Y  +P   K         +  + 
Sbjct: 86  YLFRVPEELWADVKGHGLRKEDGGDYEILW-GRQGVVYGAYPG-GKVSKPGQYRLQGDLT 143

Query: 161 DTPLLSEEDVEYLFKFFQEITVP 183
           D P   +  +  + +  + I   
Sbjct: 144 DIPTAPDWLLAEMRQPPRSINKK 166


>gi|312599305|gb|ADQ91328.1| hypothetical protein BpV2_161c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 648

 Score = 98.0 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/445 (12%), Positives = 131/445 (29%), Gaps = 54/445 (12%)

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           + V  + +      +       W N   R      N   +      +      I      
Sbjct: 216 KQVETIQDYVYGVAQKETRYELWKNLSSRGSA--YNDVIRHLTHCKDMQFPEII------ 267

Query: 424 SSSRFLGEQDGIL--------------DLETGQKVKP---TKELYITKSTGTPFVEGEPS 466
            +      ++GI               +  T +  +     + +   K     F   E  
Sbjct: 268 KNRHVWSFKNGIFIGKEWSAQTGLYESNFYTYESREFKNLDQTIVSCKYFDKEFTNYEHL 327

Query: 467 QEFLD----LVSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKS 515
           + + D          E       V  +     G      N     Q    ++G+  SGKS
Sbjct: 328 ENWYDIPTPFFQSILEYQKFDSNVSKWMYVMGGRLCFDVNDIDTWQVIPFLKGIARSGKS 387

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
           TL+  +   F N   +   ++++ +            L  +  + + I  E   + ++  
Sbjct: 388 TLITKVFRKFYNADDVRTLSNNVEKKFG---------LSSIYDAFMFIAPEVKGDLQLEQ 438

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           A+ + +  G+ ++  + +         S    +  N+    ++   +  RR +   F K 
Sbjct: 439 AEFQSIVSGEDVSIAVKHEKA-KSFEWSTPGILGGNEVPNWKDNSGSVLRRILTWNFGKQ 497

Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLKAKEEERQGTD 691
           + + D     KL+        +  ++    Y  K  D DI    PE     +++      
Sbjct: 498 VKDADPMLEYKLD-AELPIILQKCIRAYLEYAQKYADRDIWNVVPEYFKTVQKQVATIAS 556

Query: 692 TYQAWIDDC-CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI-G 749
           T + ++       G+ L+         ++ + +   N  + R +         Q+     
Sbjct: 557 TLENFMQSTGVKYGKELFCPQKEFVALFNSHCQAN-NLGKPRFTQDFYVGPFSQREIEVR 615

Query: 750 GIKREKIEKEWKSKRIIKGLKLKPA 774
            +      + +  +  I GL +   
Sbjct: 616 EVTLTYKGRNYPRQAFIFGLDIVNE 640


>gi|227544271|ref|ZP_03974320.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|227185749|gb|EEI65820.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
          Length = 220

 Score = 98.0 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 71/199 (35%), Gaps = 13/199 (6%)

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
              ++E +   KN ++ + +     + +             +     +  I     D+  
Sbjct: 32  RTFNDEQQAAFKNYENAKAYEAFILKER---STRGINGILTNSRPKLVKEIND--FDADP 86

Query: 427 RFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVM 483
             L   +G  +L+ G     +   +  ITKST       + +  + + ++ +F   + ++
Sbjct: 87  FLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCVPG-NQGASLWQEALTTFFCGDQALI 145

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
           +Y    VG+  +G    +  I   G G +GKST  N I    G      +  +     R 
Sbjct: 146 NYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHLSADALTTGVRR 205

Query: 544 PEAGKANPSLIRLMGSRIV 562
                  P +  + G R++
Sbjct: 206 ----NVKPEMAEVKGKRLI 220


>gi|325292915|ref|YP_004278779.1| regulatory protein RepA [Agrobacterium sp. H13-3]
 gi|325060768|gb|ADY64459.1| putative regulatory protein RepA [Agrobacterium sp. H13-3]
          Length = 747

 Score = 98.0 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 76/273 (27%), Gaps = 32/273 (11%)

Query: 2   PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWE----EQLLSSEKIDKLPACGFGFV 57
           PV   +  A++ +  G   I + LG+K P     ++     + L      K P    G  
Sbjct: 37  PVFPCRSHAEEHVDQGTGEI-ITLGEKTPLTPNGFKGATLNRPLIERMWTKYPKAAVGLP 95

Query: 58  CGVGEQPLYAFDIDSK--DEKTANTFKDTFEILHGTP-IVRIGQKPKILIPFRMNKEGIK 114
            G      +A DID+K       +   +        P   R+      L  +     G  
Sbjct: 96  TGEKT-GFFALDIDNKPGGANGFDWLSEMEAEHGPLPDTARVTSPNGGLHIYFKYVVGT- 153

Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
             +   +    +DI   G Y +A        + Y W T        +        ++ L 
Sbjct: 154 --RNRGALGAGVDIRSEGGYVLAAGSTMANGRSYKWET-----DTREIADAPAWLLDLLL 206

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
                              S    N       +RE+            N  +D    +  
Sbjct: 207 -------PKSAPAHTQYSLSAATNNAYVDAAVDRELADLAGAPMGSRNNALNDAAFSIGT 259

Query: 235 AVHHETRGSSKGKEI-------A-RRWSKQGST 259
            V     G S+ + +         R WS+   T
Sbjct: 260 IVGAGALGESEARALLQDVARGWGRDWSRCCKT 292


>gi|269837505|ref|YP_003319733.1| Bifunctional DNA primase/polymerase [Sphaerobacter thermophilus DSM
           20745]
 gi|269786768|gb|ACZ38911.1| Bifunctional DNA primase/polymerase [Sphaerobacter thermophilus DSM
           20745]
          Length = 458

 Score = 97.6 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 15/153 (9%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
             A      G+ +  L    K P  R     +    +  + +     P    G   G   
Sbjct: 41  RHALAYAARGWPVFALAPRAKVPLARSRGHHDATTDARAVREWWALWPDANIGIALG--G 98

Query: 63  QPLYAFDIDSKDEKTA--NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             L   D+D +    A     +  +E L   P VR G    + + +     G +   T  
Sbjct: 99  GRLVVLDVDRRHGGDATLAAVEREYEPLPPAPAVRTG--DGLHLYY---AAGGRPVPTRV 153

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP 153
                L++ G G Y VA      +   Y W   
Sbjct: 154 -LGPGLELRGDGAYVVAPPSIHPSGTRYQWADG 185


>gi|9629026|ref|NP_044045.1| MC094R [Molluscum contagiosum virus subtype 1]
 gi|1492037|gb|AAC55222.1| MC094R [Molluscum contagiosum virus subtype 1]
          Length = 791

 Score = 97.6 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 88/277 (31%), Gaps = 41/277 (14%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ----------EFLDL 472
           D     L   DG+LD+  G             +  T +     ++          E   +
Sbjct: 409 DVFPEKLPFADGVLDIADGSFHTGADAKDFMCTVSTGYRLERDARARDALAPARAELERV 468

Query: 473 VSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
           +         + E    + + +   L G  K        G   +GKST   L++ A    
Sbjct: 469 LDDIQPRSPGNAENRALYEKVLASCLCGATK-PCIFFFFGETATGKSTTKKLLQSALHGL 527

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINAAKIKQMTG 583
           ++   +               NP L  +   R V  SE  +       +I A  +K++T 
Sbjct: 528 FLETGQTILTD----LMDKGPNPFLANMHLKRAVFCSELPDFSCSGAKKIRADNVKRLT- 582

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---- 639
             C+  R  Y N  +      T  I  N        D+A  RR  ++ F    +NR    
Sbjct: 583 EPCLVGRPCYSNRINN-RNHATIIIDTNYRPVFDKVDNALMRRVGLVRFRTHFSNRGAPA 641

Query: 640 ----------DASFAQKLETKY-TLEAKKWFLKGVKA 665
                     DA+  +K+++ Y      +  L+  + 
Sbjct: 642 SRLYDTVKPLDAALDRKIQSHYFRFAFLELLLEWYQR 678


>gi|281419611|ref|ZP_06250619.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
 gi|281406743|gb|EFB37013.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
          Length = 268

 Score = 97.6 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 64/250 (25%), Gaps = 34/250 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G ++      E+I K  
Sbjct: 7   DAALKYAEANIPVIPLHWICEDGSCSCKAGRNCDSKGKHPLYTGWYKNSTSDIEQIRKWW 66

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T   L    +  +         F
Sbjct: 67  TKTPNANIGIPTGAKSDWLV-LDVDDGGDETISALESTHGKL-PDTVTAVTGSGGWHYVF 124

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           +  K   +           LD    G   V       +  +Y W      F         
Sbjct: 125 KYPKG--RSIPNKTKFAPGLDTRSTGGLIVVAPSIHVSGNQYQWLEGHSPFD-RTLAEAP 181

Query: 167 EEDVEYLFK--------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218
              ++ + +            I   + +  ++   +        R  T   I A L    
Sbjct: 182 AWLLKLMERVEVLLTPFEGSSIAAEIKEGSRNSTLTSLAGTMRARGMTEESIYAALLAEN 241

Query: 219 EEFYNGSHDE 228
               N + DE
Sbjct: 242 NARCNPTLDE 251


>gi|331019769|gb|EGH99825.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 897

 Score = 97.3 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 110/852 (12%), Positives = 225/852 (26%), Gaps = 158/852 (18%)

Query: 9   QAKQAIHN-GFKLIPLRLGDKRP-----QRLGKWEEQLLSSEK-IDKLPACGFGFVCGVG 61
            A++      F L+P++ G+K P      + GK+      +E    K P    G V G  
Sbjct: 11  WARRYCETFNFALVPIQPGEKGPKGRGWNQPGKYIVDPAMAEAFWTKNPNHNLGVVLGP- 69

Query: 62  EQPLYAFDIDSKD---EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK-------- 110
              + + D+D                 + L  T    +G   +  + F++ +        
Sbjct: 70  -SRVCSLDVDDVQWTRFVLYELLGVDLDALALTFPTVVGNPLRFRVLFQVPEGLELTRHS 128

Query: 111 --------------EGIKKKKTTESTQGH-------------------LDILGCGQYFVA 137
                         + I  K       G                     ++       V 
Sbjct: 129 LSWPNENDPDGSKHKSIMLKANAAREAGDTAREALYRADAEQYKRFTVFELRAGLVQDVL 188

Query: 138 YNI-HPKTKKEYTWTTPPHRFKVEDT--------------PLLSEEDVEYLFK------- 175
               HP T + YTW TPP    +                    +E    +L K       
Sbjct: 189 PPSIHPGTGQPYTWRTPPDASGLPVLIGDLLNVWNNWDVFKRGAEAACPWLPKDAKPTGK 248

Query: 176 -------------------------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210
                                      +EI       K+        ++      T  E 
Sbjct: 249 QKPKPKPAPAGGKRPSVIDEFNNCHDVEEILRSHGYTKRGGKWLYPQSSTGLPGITVAEG 308

Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW- 269
             +     +   NG  ++   V   + H    S   KE AR    Q +     +      
Sbjct: 309 KVYSHHAADPLANGHQNDAFEVFCLLEHGGDQSKAVKEAARMLGMQSTRPSASDLPPAPT 368

Query: 270 ------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
                 D  +   + D A              +++ +  L    +  ++       KK  
Sbjct: 369 EGSDQSDAAEPAAVSDAAPAPDGGAGEELTIEQVLRRFALVEGTTHVWDFDKSRAMKKSA 428

Query: 324 F---LYTADTKAWYKKDKNNVYIWSLTLD----KITASIMNFLVSMKEDVFDLSEEPEDN 376
           F   +     K W       +       D    +  A      + M+     +  +   +
Sbjct: 429 FEARVGKPIAKLWLDATDKKLIADDQVKDIEQARKMAGKKGGALGMRPTERYVYIDGTKD 488

Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
             + +  R       +    +  +   ++++         +    +             +
Sbjct: 489 VWDREKKRRIAEGAVKMALGDTYALWLNSSERRVVDVEHIVFDPTMTKDPSIY------I 542

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-- 494
           +   G  ++P  +                 +  +  +      E    + TR +   L  
Sbjct: 543 NTFDGLPLEPVNDDA----------ACANLRWLISFLCN--HDEAAALWLTRWLAYPLQH 590

Query: 495 LGGNKAQRFIHIRGVGGSGKS-TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           LG       +    + GSGKS    +     +G       +             ++N + 
Sbjct: 591 LGAKMDTAVLMHSTMEGSGKSLLFADTFGALYGQYAATVGQTQL----------ESNFNA 640

Query: 554 IRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
            +      V     + +   N   KIK +  G  +     + N + E+      F+    
Sbjct: 641 WQSRKMWAVFEEVVSRDQRYNQVGKIKHLVTGKTVRMESKFINGWEEANHMNAVFLSNEI 700

Query: 613 HL-FVRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
               + + D    RR +V+ P +     R  +  ++LE         W L+      ++ 
Sbjct: 701 LPWPISDSD----RRMLVMWPMETLPIARQKAIGRELENGGVAALYGWLLRVDLGDFNER 756

Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQELNY 728
                     +     R G  T+  ++    ++G  LW    S  L   + E+ ++    
Sbjct: 757 TRPPSTASRERLVALSRAGWQTF-LYLWRYGELGRGLWGVCLSTDLYALFLEWCQRNKE- 814

Query: 729 DRKRISTRTVTL 740
               +S    +L
Sbjct: 815 --HVMSQTKFSL 824


>gi|302873740|ref|YP_003842373.1| Bifunctional DNA primase/polymerase [Clostridium cellulovorans
           743B]
 gi|307690022|ref|ZP_07632468.1| Bifunctional DNA primase/polymerase [Clostridium cellulovorans
           743B]
 gi|302576597|gb|ADL50609.1| Bifunctional DNA primase/polymerase [Clostridium cellulovorans
           743B]
          Length = 893

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 84/648 (12%), Positives = 165/648 (25%), Gaps = 72/648 (11%)

Query: 27  DKRPQRLGKWEEQLLSSEKI----DKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82
            K P      ++   S E+I     K P    GF  G      +  D+D           
Sbjct: 42  GKHPIYSNWGKKATTSEEEIIAEFKKYPKANIGFATG---DNYFVLDVDI--GHGGYESL 96

Query: 83  DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHP 142
             +  L  T  VR G        + M                 +DI   G   VA     
Sbjct: 97  KEYGELKKTLSVRTG-SGGSHHYYLMPDGVT--VPNRVGVLNGVDIRSNGGLVVAPGSVH 153

Query: 143 KTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202
           K+ K Y W        V +     +  ++ +F     +       ++    +   +   +
Sbjct: 154 KSGKHYEWLEHCSIDDV-EITTPDKWLIDLIFSKKSSVKEVPESIEEGSRNAVMASIAGS 212

Query: 203 RQY---TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ--- 256
            +    +   I A L        N   ++   V        R + +       W +    
Sbjct: 213 LRRKGLSFEAILAALLVENNNRCNPPLND-SEVETIAKSICRYNPEAPITGEEWGEDKKE 271

Query: 257 ---GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK--------GLLAS 305
               S  + E+F+  ++     ++           ++     K              +  
Sbjct: 272 NLLSSISNLEDFSKIYEKDMLSKLSMAKDNDPVTFAIIKSKLKGKINLKDLERAIKHIKH 331

Query: 306 RFSDAYNKAMFSI-------YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
              +   K    +       Y           +   K ++N   I+       T  +++ 
Sbjct: 332 SEKEVEFKQALELDGLGTNGYMIPFGWSVDFNEGISKYEQNGEGIFKEVPVSFTPVVISR 391

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA------G 412
                    +L  E E    +     +W      R  +   +     A S         G
Sbjct: 392 RFH------NLDTEQEKVELSFYRDGYWKKVLAPRSVIFNRNSILRLADSSFPVSSNNAG 445

Query: 413 SIFSITSDLLDSSSRFLGEQDGIL--------DLETGQKVKPTKELYITKSTGTPFVEGE 464
            + S  SD    + + +     +         +       +  +    +K         +
Sbjct: 446 ELISYLSDFERENDKAIPVIKSVARLGWLKESEFFPYSTREYLEFENDSKEASNIMAGLK 505

Query: 465 PSQEFLDLVSGYFESEEVM--DYFTR--CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
              +F   +    ++ E +   +        + L   +K   FIH+     SGK+  + L
Sbjct: 506 TYGDFDKWLEVARKARENLAARFIMASSFASVLLEPLHKRVFFIHLWHNSRSGKTATIKL 565

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINAAKIK 579
              AFGN          ++ +              L      I         +++   I 
Sbjct: 566 SMSAFGNPNK-------LIGSFNSTIVGLERMAAALRNLPFAIDELQVLNTKKMSTDSII 618

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDDAWWR 625
            M        R +      E+       I   +   L     D A  R
Sbjct: 619 YMLSQGQGRTRGSKDGGIQETLTWRNIIITTGEEAMLGTNMQDGANTR 666


>gi|115531777|ref|YP_784303.1| NTPase [Crocodilepox virus]
 gi|115521130|gb|ABJ09004.1| NTPase [Crocodilepox virus]
          Length = 781

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 70/365 (19%), Positives = 122/365 (33%), Gaps = 41/365 (11%)

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
           ++I  + +       E +  ++   E    N+   R   +      + E      S  + 
Sbjct: 331 ERIMEAGVVHKNKYGEYIAWIAGRWETETDNNHLTRLVLSMKDAVDDDEGLVLVPSNRRI 390

Query: 409 LEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE--- 462
           +E      ITS +  D     L   +GILD+ T +  +    K+   T STG  +     
Sbjct: 391 IENNLKDMITSCVATDLFPEKLQFDNGILDVATREFHRGEEGKDFVCTVSTGYEYAPTPA 450

Query: 463 -GEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
                 E   ++         +    + F R +   L G NK        G   SGKST+
Sbjct: 451 GDPAVTELRAVLDDIQPPTGGNAGNREVFERVLSSCLCGVNKPYI-FFFYGDTSSGKSTV 509

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DE 572
             L++  F   +   ++   +     P     NP +  +   R+   SE  +       +
Sbjct: 510 KKLLRSVFDGLFTETSQCILVE----PFDKGPNPYVSSIHLKRVTFCSELPDFSCNNVKK 565

Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
           I +  +K++T  +C+  R  + N  S    S T  I  N        D+A  RR  +I F
Sbjct: 566 IRSDNVKKLT-ENCIVGRACFSNKISNCNVS-TIIIDSNYKPVFDKVDNAIMRRIGLIHF 623

Query: 633 DKPI----------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDI 675
                                  +A    K+ T Y         L+    +   GL ++ 
Sbjct: 624 KTHFSPNLNRPCLGNSYDVVKKLNAELESKIRTNYFRGAFLTLLLEWYAKHHLHGLSLEP 683

Query: 676 -PEVC 679
            PE+ 
Sbjct: 684 TPELI 688


>gi|281419623|ref|ZP_06250630.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
 gi|281406730|gb|EFB37001.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
          Length = 268

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 64/250 (25%), Gaps = 34/250 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G +       E+I K  
Sbjct: 7   DAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKKWW 66

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T   L    +  +     +   F
Sbjct: 67  TKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKL-PDTVTAVTGGGGLHYIF 124

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           +  K   +            D    G   V       +  +Y W      F  +      
Sbjct: 125 KYPKG--RSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFD-KTLAEAP 181

Query: 167 EEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFG 218
           E  +      E L   F+  ++     + S   + T        R  T   I   L    
Sbjct: 182 EWLLKLMEREEVLLTPFEGRSIVAGIKEGSRNSTLTSLAGTMRARGMTEEGIYTALLAEN 241

Query: 219 EEFYNGSHDE 228
               N   DE
Sbjct: 242 NARCNPPLDE 251


>gi|317508622|ref|ZP_07966280.1| bifunctional DNA primase/polymerase [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253089|gb|EFV12501.1| bifunctional DNA primase/polymerase [Segniliparus rugosus ATCC
           BAA-974]
          Length = 679

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 94/367 (25%), Gaps = 57/367 (15%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEK----- 45
           E A +    G+ +IP+                 +    +    G W+    ++E      
Sbjct: 6   EGALRLAKLGWAVIPVHYVVPSTGVCSCGNADPKHSTGKHPIRGGWQNGPAATEADVYSL 65

Query: 46  -IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP-KIL 103
            +++ P    G   G      +A D+D +      T           P   + +      
Sbjct: 66  FMEENPRYNVGVRTGKVS-GFFALDVDPRHG-GDETLAALVAEHGALPATVVVRTGSGGQ 123

Query: 104 IPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
             +    E  +           LD+ G G + VA          Y + + P         
Sbjct: 124 HYYFQLPEDFEVGNNKSYIGDGLDVRGKGGFVVAPPSASGEGG-YRFESDPETT---AIA 179

Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
              E  +E L    +             +P +     + ++  +    A ++   + + N
Sbjct: 180 PAPEWLLELL--RPKANEQEAEAVVVEDLPDRDGMPESVQRRYDAYARAAVASEADLYRN 237

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARR-WSKQGSTYDEENFN------YKWDTF---- 272
                  P+          +  G EI+   W+                   KW       
Sbjct: 238 A------PLGRGNDALFTAACNGFEISNSPWNAVTGKDVRAALEAARVERAKWRGAGGGQ 291

Query: 273 ---DFEEIGDTAKKRSTFTSLF--YHHGKLIPKGLLASRFS--DAYNKAMFSIYKKG-HF 324
              +F +  D+A+  +T                G         D + K +   +      
Sbjct: 292 TEEEFRKTVDSARNTTTGKGRRPPEEREDKQIGGDEVDDMHVLDDHVKWLLDQFVDSQDV 351

Query: 325 LYTADTK 331
               D +
Sbjct: 352 DAAPDRR 358


>gi|288964715|gb|ADC79472.1| hypothetical protein [Staphylococcus aureus]
          Length = 539

 Score = 96.9 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/391 (12%), Positives = 118/391 (30%), Gaps = 28/391 (7%)

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
           +++  ++   +I K   +         Y             L ++   +   +     ++
Sbjct: 48  YNELIDQLRLNIPKDTDYRPNI-----YSYFGIKKNPNDTVLMELMIKVF-HIKRFNSEL 101

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
           F             +              + +   + ST +++  G   S   + L  + 
Sbjct: 102 FVFKANGWQKINGDELQGLISKMIQVL--LVDYKPSLSTLKNVVDGLQKSTDVEELVENE 159

Query: 427 RFLGEQDGILDLET----GQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SE 480
            ++G  + + DL T       +    +  +  S  T  V  +     F   +       +
Sbjct: 160 HYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQYMLQLANYDD 219

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           ++  +  +   + L    K +R + + G   +GKS  + L+K  F ++ +++   +++  
Sbjct: 220 DLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG 279

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNTYS 598
                          L+   ++   E  ++          K++   + M      G T  
Sbjct: 280 ---------RFDKESLIDKSLMASHEIGQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQV 329

Query: 599 ESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
           E           N  L        A  RR  +IP +  +   D S   KL+     E   
Sbjct: 330 EVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVEKADTSLIDKLQ-SEKKEIFL 388

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           + +   +  +   ++        +   +   
Sbjct: 389 YLMYVYQQIVKADIEYLENSRVTEITHDWLN 419


>gi|291336073|gb|ADD95660.1| hypothetical protein [uncultured phage MedDCM-OCT-S11-C349]
          Length = 633

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 66/219 (30%), Gaps = 34/219 (15%)

Query: 105 PFRMNKEGIKKKKT---TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
            FR+ +E     K     +   G  +IL  G+  V Y  +P   K         +  + D
Sbjct: 1   MFRVPEELWADVKGHGLRKEDGGDYEILW-GRQGVVYGAYPG-GKVSKPGQYRLQGDLTD 58

Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
            P   +  +  + +  + I               T    +       E    +S  G+  
Sbjct: 59  IPTAPDWLLAEMRQPPRSINKK--------ELDFTDRTQDEIAQIIFECLTVISQQGK-- 108

Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN-----FNYKWDTFDFEE 276
             G+ D W+ + MA+H        G  +   WS +   Y  E          W +F    
Sbjct: 109 --GTRDHWVKIGMAIHSALPTD-MGLHLWASWSCEDPDYASEWENSNPCEEVWYSF---- 161

Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
                       +L +   +   +     RFS+   K +
Sbjct: 162 ----KGNGVGLGTLIWLADR---EDPDRKRFSEDTKKIV 193


>gi|14021049|dbj|BAB47673.1| hypothetical protein [Staphylococcus aureus]
 gi|27529899|dbj|BAC53836.1| hypothetical protein [Staphylococcus aureus]
 gi|205825353|dbj|BAG71444.1| hypothetical protein [Staphylococcus aureus]
 gi|288551796|gb|ADC53392.1| hypothetical protein [Staphylococcus aureus]
 gi|329315336|gb|AEB89749.1| hypothetical protein SAT0131_02878 [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 547

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/391 (12%), Positives = 119/391 (30%), Gaps = 28/391 (7%)

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
           +++  ++   +I K   +         Y             L ++   +   +     ++
Sbjct: 48  YNELIDQLRLNIPKDTDYRPNI-----YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSEL 101

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
           F             +              + +   + ST +++  G   S   + L  + 
Sbjct: 102 FVFKANGWQKINGDELQGLISKMIQVL--LVDYKPSLSTLKNVVDGLQKSTDVEELVENE 159

Query: 427 RFLGEQDGILDLET----GQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SE 480
           R++G  + + DL T       +    +  +  S  T  V  +     F   +       +
Sbjct: 160 RYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQYMLQLANYDD 219

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           ++  +  +   + L    K +R + + G   +GKS  + L+K  F ++ +++   +++  
Sbjct: 220 DLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG 279

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNTYS 598
                          L+   ++   E  ++          K++   + M      G T  
Sbjct: 280 ---------RFDKESLIDKSLMASHEIGQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQV 329

Query: 599 ESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
           E           N  L        A  RR  +IP +  +   D S   KL+     E   
Sbjct: 330 EVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVEKADTSLIDKLQ-SEKKEIFL 388

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           + +   +  +   ++        +   +   
Sbjct: 389 YLMYVYQQIVKADIEYLENSRVTEITHDWLN 419


>gi|149003120|ref|ZP_01828029.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
 gi|147758861|gb|EDK65857.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
          Length = 313

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 76/215 (35%), Gaps = 20/215 (9%)

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL---LDSSSRFLGEQDGILDLETGQKV 444
           N  +R+  ++ +S+  S    LE  S     + +   LD   R++   +G+ +++T +  
Sbjct: 92  NDIFRKLLLKYDSRLTSNKFFLELISYIRTETKMKPPLD-DYRYIPVANGVYNIKTHKLE 150

Query: 445 KPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY-FESEEVMDYFTRCVGMALLGG 497
           + +    IT    T +             +F   +       +EV+    + +  A+   
Sbjct: 151 EFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEALAVNDKEVVALLWQVINEAINPN 210

Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
              ++ + + G G +GK T  +L++   G   + N +     +            L  L 
Sbjct: 211 RTRKKMVLMVGDGNNGKGTFQSLLENLIGRSNISNLKPDQFGKE---------FYLGALE 261

Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
           G    I  + +       + +  +  GD +     
Sbjct: 262 GKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKK 296


>gi|330939433|gb|EGH42789.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 897

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 106/856 (12%), Positives = 219/856 (25%), Gaps = 166/856 (19%)

Query: 9   QAKQAIHN-GFKLIPLRLGDKRP-----QRLGKWEEQLLSSEK-IDKLPACGFGFVCGVG 61
            A++      F L+P++ G+K P      + GK+      +E    K P    G V G  
Sbjct: 11  WARRYCETFNFALVPIQPGEKGPKGRGWNQPGKYIVDPAKAEAFWTKNPNHNLGVVLGP- 69

Query: 62  EQPLYAFDIDSKD---EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK-------- 110
              + + D+D                 + L  T    +G   +  + F++ +        
Sbjct: 70  -SRVCSLDVDDVQWTRFVLYELLGVDLDALALTFPTVVGNPLRFRVLFQVPEGLELTRHS 128

Query: 111 --------------EGIKKKKTTESTQGH-------------------LDILGCGQYFVA 137
                         + I  K       G                     ++       V 
Sbjct: 129 LSWPNENDPDGSKHKSIMLKANAARDAGDTAREALYRADAENYKRFTVFELRAGLVQDVL 188

Query: 138 YNI-HPKTKKEYTWTTPPHRFKVEDT--------------PLLSEEDVEYLFK------- 175
               HP T K YTW TPP    +                    +E    +L K       
Sbjct: 189 PPSIHPGTGKPYTWRTPPDASGLPILISDLLNVWNNWDVFKRGAEAACPWLPKDAKPAGK 248

Query: 176 -------------------------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210
                                      +EI       K+        ++      +  E 
Sbjct: 249 QKPKPKPAPAGCKRPSVIDEFNNSHDVEEILRSHGYTKRGSKWLYPQSSTGLPGISVAEG 308

Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270
             +     +   NG  ++   V   + H    S   K+ AR    Q +            
Sbjct: 309 KVYSHHAADPLANGHQNDAFEVFCLLEHAGDQSKAVKDAARMLGMQSARPSASELPPAPT 368

Query: 271 TFDFEEIGDTAKKRSTFTSLFY--HHGKLIPKGLLA-----SRFSDAYNKAMFSIYKKGH 323
               +         S            +L  + +L         +  ++     + KK  
Sbjct: 369 EGSDKPDAAAPDAASEAAPAPDGGAGEELTIEQVLRRFALVEGTTHVWDSDKSRVMKKSA 428

Query: 324 F---LYTADTKAWYKKDKNNVYIWSLTLD----KITASIMNFLVSMKEDVFDLSEEPEDN 376
           F   +     K W       +       D    +  A      + M+     +  +   +
Sbjct: 429 FEARVGKPIAKLWLDATDKKLIADDQVKDIEQARKMAGKKGGALGMRPTERYVYIDGTKD 488

Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
             + +  R       +    +  +   ++++         +    +             +
Sbjct: 489 VWDREKKRRIAEGAVKMALGDTYALWLNSSERRVVDVEHIVFDPTMTKDPSIY------I 542

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-- 494
           +   G  ++P  +                 +  +  +      E    + TR +   L  
Sbjct: 543 NTFDGLPLEPVNDDA----------ACANLRWLISFLCN--HDEAAALWLTRWLAYPLQH 590

Query: 495 LGGNKAQRFIHIRGVGGSGKS-TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           LG       +    + GSGKS    +     +G       +             ++N + 
Sbjct: 591 LGAKMDTAVLMHSTMEGSGKSLLFADTFGALYGQYAATVGQTQL----------ESNFNA 640

Query: 554 IRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
            +      V     + +   N   KIK +  G  +     + N + E+      F+    
Sbjct: 641 WQSRKMWAVFEEVVSRDQRYNQVGKIKHLVTGKTVRMESKFINGWEEANHMNAVFLSNEI 700

Query: 613 HL-FVRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
               + + D    RR +V+ P +     R  +  ++LE         W L+      ++ 
Sbjct: 701 LPWPISDSD----RRMLVMWPMETLPVARQKAIGRELENGGVAALYGWLLRVDLGDFNER 756

Query: 671 LDVDIPEV----CLKAKEEERQGTDTYQAWIDDCCDIGENLWEE--SHSLAKSYSEYREQ 724
                          ++   +        W     ++G  LW    S  L   + E+ ++
Sbjct: 757 TRPPSTASRERLVALSRAGWQT---FLHLW--RYGELGRGLWGACLSTDLYALFIEWCQR 811

Query: 725 ELNYDRKRISTRTVTL 740
                   +S    +L
Sbjct: 812 NKE---HVMSQTKFSL 824


>gi|251811420|ref|ZP_04825893.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805049|gb|EES57706.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 539

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/391 (12%), Positives = 118/391 (30%), Gaps = 28/391 (7%)

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
           +++  ++   +I K   +         Y             L ++   +   +     ++
Sbjct: 48  YNELIDQLRLNIPKDTDYRPNI-----YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSEL 101

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
           F             +              + +   + ST +++  G   S   + L  + 
Sbjct: 102 FVFKANGWQKINGDELQGLISKMIQVL--LVDYKPSLSTLKNVVDGLQKSTDVEELVENE 159

Query: 427 RFLGEQDGILDLET----GQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SE 480
            ++G  + + DL T       +    +  +  S  T  V  +     F   +       +
Sbjct: 160 HYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQYMLQLANYDD 219

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           ++  +  +   + L    K +R + + G   +GKS  + L+K  F ++ +++   +++  
Sbjct: 220 DLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG 279

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNTYS 598
                          L+   ++   E  ++          K++   + M      G T  
Sbjct: 280 ---------RFDKESLIDKSLMASHEIGQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQV 329

Query: 599 ESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
           E           N  L        A  RR  +IP +  +   D S   KL+     E   
Sbjct: 330 EVILDLKLIFSTNAILNFPPEHAKALERRVNIIPCEYYVEKADTSLIDKLQ-SEKKEIFL 388

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
           + +   +  +   ++        +   +   
Sbjct: 389 YLMYVYQQIVKADIEYLENSRVTEITHDWLN 419


>gi|37626154|gb|AAQ96530.1| putative integrase [Vibrio phage VP16T]
          Length = 791

 Score = 96.5 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 90/319 (28%), Gaps = 49/319 (15%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGK--WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
           A     NG  + P    DK P       W++   +       P+   G       Q +  
Sbjct: 5   AVTLKANGLDVFPCL-QDKTPAVPKGTSWKQWAHADLNALPWPSDIVGV---PIPQGVVV 60

Query: 68  FDIDSKDEKTANTFKDTFEILHGTPIVRI--GQKPKILIPFRMNKEGIKKKKTTESTQ-- 123
            D+D+    T    +             I   Q       FR     +K     +  Q  
Sbjct: 61  LDLDTYKGITREYVEAGAGFAIPWDEAHIQDTQSGGQHYAFRAPDWPVKNISNAKHNQTG 120

Query: 124 ---GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
                LD+   G+       +  T + Y   T                    +   F ++
Sbjct: 121 EKFEGLDVRSAGK------GYIATGEPYYRPTAKGG---------------AVAMAFPQM 159

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
             PL +  +  + +    +    + T++E                 +EW+ V +A+    
Sbjct: 160 LPPLPEGLRPWLEAVEHDSAERVEITDQEAQTVREALSYIDPGDKREEWVKVGLALKSGF 219

Query: 241 RGSSKGKEIARRWSKQG--------STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
               +G  +   WS           + Y  E+   +W +F        A+   T  ++++
Sbjct: 220 GDDPQGLSLFDEWSSGALWQDGDMPANYVPEHIETQWHSF-------KAEGGRTIATVYH 272

Query: 293 HHGKLIPKGLLASRFSDAY 311
              +   +       +D +
Sbjct: 273 KAIEGGWQPPAGINAADVF 291


>gi|37626216|gb|AAQ96591.1| putative integrase [Vibrio phage VP16C]
          Length = 791

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 95/323 (29%), Gaps = 57/323 (17%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGK--WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
           A+Q   +G    P    +K P       W++   +       P+   G         +  
Sbjct: 5   AQQLKAHGLGAFPCL-QNKMPAVPKGTSWKDWAHAELNALPWPSDIVGV---PIPSGVVV 60

Query: 68  FDIDSKDEKTANTFKDTFEILHG------TPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
            D+D+    T    ++  E   G         ++  Q       FR     +K     + 
Sbjct: 61  LDLDTYKGIT----REYVEAGAGFAIPWDAAHIQTTQSGGQHYAFRAPNWPVKNISNAKH 116

Query: 122 TQGHL-----DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
            +  +     D+   G+       +  T + Y   T                    L   
Sbjct: 117 NETGVQFEGLDVRSAGK------GYIATGEPYYTPTHLGG---------------ALAMA 155

Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
           F ++  PL +  +  + +    ++   + T+ +               + +EW+ V +++
Sbjct: 156 FPQMLPPLPEGLRPWLEAVAHESSERVEVTDEDAKTIREALRHIDPGETREEWVKVGLSL 215

Query: 237 HHETRGSSKGKEIARRWSKQG--------STYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
                   +G  +   WS           + Y  E+   +WD+F        A+   T  
Sbjct: 216 KSGFGDDPQGLSLFDEWSSGALWRDGDEPANYVPEHIETQWDSF-------KAEGGRTIA 268

Query: 289 SLFYHHGKLIPKGLLASRFSDAY 311
           ++++   +   +        D +
Sbjct: 269 TVYHKAIEGGWQPPAGINAFDVF 291


>gi|322366581|gb|ADW95367.1| putative phage/plasmid primase [Staphylococcus cohnii]
          Length = 545

 Score = 96.1 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 111/354 (31%), Gaps = 24/354 (6%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
           + T+       +  +     ++F   +         +              +     + S
Sbjct: 79  NDTILVEMMISIFHIKRFDSELFIFKDIGWQKVNEDELQGLISKMIQVL--LVGYKPSLS 136

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
           T +++  G   S     L    +++G    + +L T + V+ + +++          + +
Sbjct: 137 TLKNVVDGIQKSTDVKELVEDKQYIGCGLNMFNLNTFEVVENSIKIFPKTRLNLELNKSD 196

Query: 465 PS-----QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
                    F   +        ++  +  +   + L    K +R + + G   +GKS  +
Sbjct: 197 VITDKIPPYFNRYMLELANFDSDLQYFLFQHTAVLLTADTKRRRGLILYGAANNGKSVFI 256

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK- 577
            L+K  F +  VI+   ++I                 L+G R++   E  E  +IN    
Sbjct: 257 KLLKSFFYSNDVISKTLNEIGG---------RFDKESLVGKRLMASDEIGE-AKINEKVV 306

Query: 578 --IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDK 634
              K++   + + A    G T  E           N  L        A  RR +VIP + 
Sbjct: 307 NDFKKLLSVEPIHADRK-GKTQVEVTLDLKLVFNTNAVLSFPPAHAKALERRIVVIPCEY 365

Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
            +   D     KL+         + +   K  +   ++    E   +   +   
Sbjct: 366 YVTKADPDLVVKLQ-SEKKAIFLYLMYVYKQILDDDVEKIENERVTELSHDWLN 418


>gi|281419297|ref|ZP_06250313.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
 gi|281407163|gb|EFB37425.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
          Length = 268

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 66/250 (26%), Gaps = 34/250 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G ++      E+I K  
Sbjct: 7   DAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYKNSTTDVEQIKKWW 66

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T   L    +  +     +   F
Sbjct: 67  TKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKL-PDTVTAVTGGGGLHYIF 124

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           + ++   +            D    G   V       +  +Y W      F  +      
Sbjct: 125 KYSQG--RSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFD-KTLAEAP 181

Query: 167 EEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFG 218
           E  +      E L   F+  ++     + S   + T        R  T   I   L    
Sbjct: 182 EWLLKLMEREEVLLTPFEGRSIVAGIKEGSRNSTLTSLAGTMRARGMTEEGIYTALLAEN 241

Query: 219 EEFYNGSHDE 228
               N   DE
Sbjct: 242 NARCNPPLDE 251


>gi|323173146|gb|EFZ58777.1| hypothetical protein ECLT68_2560 [Escherichia coli LT-68]
          Length = 565

 Score = 95.7 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 77/610 (12%), Positives = 160/610 (26%), Gaps = 95/610 (15%)

Query: 14  IHNGFKLIPLRL-GDKRPQRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFD 69
           + + F   P R  G ++   +  W   +++     +    P  G     G     + A D
Sbjct: 14  LSHNFGKTPCRYNGQRKVVGIPDWANYVVTENDFARWSNEPDYGICVRTG---DGVVALD 70

Query: 70  IDSKDEKTANTFKDTFEILHG--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127
            D  D       ++      G   P        K L    ++ +  K+    E     ++
Sbjct: 71  CDINDAGMQEIVRNIILSCLGELPPRRWRADSHKCLYLIAVDGDYRKRGHRLEGENKQIE 130

Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187
           +L  GQ FVA   HP   +   W        ++    ++ E +E L++   +        
Sbjct: 131 LLAKGQQFVACGTHPA-GERIQWDCGLPGEPLK----ITSEQLESLWQRLADNLPVKDSY 185

Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV-VMAVHHETRGSSKG 246
                  +                  LSC           +W+      +   + GS   
Sbjct: 186 TAGAGRQRD-----------------LSCVDPS-ATDDVADWLDANGWTLSVSSDGSRNL 227

Query: 247 KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
           K          S Y           F         K    F    +        GL  + 
Sbjct: 228 KPFRDE-----SEYSNGCSETSIKYF--------PKGTGGFEQGHFKSMHNTDAGLTDAD 274

Query: 307 FSD--AYNKAMFSIY-----KKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
           + +   Y +++F                 +T       +  +Y+     D++        
Sbjct: 275 WLEGYGYTQSLFEDLTVAEDGDKPEFTDINTDMTAHFLERFIYVIEG--DQVCDLSRPPY 332

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
             M +     +             +    T    +      + K  A++           
Sbjct: 333 QCMMDMKSFKNLMAPYQFPPEGKGQPVPATKRWIE-----HRHKKIAETTGYKPGAGRII 387

Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
           +  D          G  ++      +  +    +K +            FL+ ++     
Sbjct: 388 ERFD----------GRFEINEFYMPEHPRTADTSKVS-----------TFLNHMAYLVPD 426

Query: 480 EEVMDYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
               ++F   +G  +           +H+    G+G+  +  L++   G           
Sbjct: 427 AWQREFFIARLGWMVQRPERRCPISILHVATAHGTGRGWVSQLMERVLGPWNCARTRMKI 486

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA--AKIKQMTGGDCMTARLNYG- 594
           +  N+  +          L  + +  I E  END+      KI+ +           YG 
Sbjct: 487 LCDNQFHD---------YLYNTLLCTIDEVRENDKRYEVNDKIRDVLTEPRFEVNRKYGS 537

Query: 595 NTYSESPASF 604
                   +F
Sbjct: 538 KKRWIYTPAF 547


>gi|294085074|ref|YP_003551834.1| hypothetical protein SAR116_1507 [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664649|gb|ADE39750.1| hypothetical protein SAR116_1507 [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 728

 Score = 95.7 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 96/318 (30%), Gaps = 34/318 (10%)

Query: 465 PSQEFLDLVSG--YFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLI 521
               +L+ +        E++ +Y    +  A+   G +    + IRG  G GK   +N+ 
Sbjct: 399 DCGLYLEHIRQNICLGDEDLYEYVLDWMADAIQNPGKRPGVALAIRGKQGVGKGVFVNVF 458

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQ 580
              FG   +   ++S ++ N              L    +V   E     D+     +K 
Sbjct: 459 ASLFGPHAIQVTQSSHLVGNFN----------AHLRDKLLVFADEAFWAGDKRAEGVLKG 508

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
           +   D +   +  G     SP      +  N    +    D   RR++VI   +      
Sbjct: 509 LVTEDNIAIEMK-GIDVQSSPNYVRLILASNNEWIIPASAD--QRRFVVIEASEARMQDA 565

Query: 641 ASFAQKLETKYTLEAKKWF-LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
           + F   +        +        +      L  +IP+       ++    D+   W+ +
Sbjct: 566 SYFGSIINQIENGGREALMYFLSERDLNRVNLR-NIPKT-EALVMQQLHSLDSVAQWLYN 623

Query: 700 CC---DIGENLW---------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           C    +I ++               +   +Y  + ++  +              L++   
Sbjct: 624 CLYSGEIEDDAHGIRTSWPTSVSVSNFFDAYIYFCKR--HSISHPSKLAVFGRRLRELLP 681

Query: 748 IGGIKREKIEKEWKSKRI 765
                RE  +      ++
Sbjct: 682 SSRKIREGGKTRDAKYQL 699


>gi|281419573|ref|ZP_06250583.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
 gi|281406762|gb|EFB37030.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
          Length = 268

 Score = 95.7 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 66/255 (25%), Gaps = 34/255 (13%)

Query: 3   VMQWKEQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEK 45
            M   + A +       +IPL                     K P   G ++      E+
Sbjct: 2   KMTMMDAALKYAETNIPVIPLHWICEDGSCSCKKGQQCDSKGKHPLYTGWYKNSTTDVEQ 61

Query: 46  IDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK 101
           I K     P    G   G     L   D+D   ++T +  + T   L  T     G+  +
Sbjct: 62  IKKWWTKTPNANIGIPTGAKSDWLV-LDVDDGGDETLSALESTHGKLPDTVTAVTGRGGR 120

Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
               F+  +   +           LD    G   V       +   Y W      F    
Sbjct: 121 -HYIFKYPQG--RSIPNKTKFAPGLDTRSTGGLIVVAPSIHVSGNRYEWIKDYSPFD-RT 176

Query: 162 TPLLSEEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAF 213
                   +      E L   F+  ++     + S   + T    +   R  T   I   
Sbjct: 177 PAEAPAWLLKLMERVEVLLTPFEGSSIIAEIKEGSRNSTLTSLAGSMRARGMTEEGIYTA 236

Query: 214 LSCFGEEFYNGSHDE 228
           L        N   DE
Sbjct: 237 LLAENNARSNPPLDE 251


>gi|315501675|ref|YP_004080562.1| bifunctional DNA primase/polymerase [Micromonospora sp. L5]
 gi|315408294|gb|ADU06411.1| Bifunctional DNA primase/polymerase [Micromonospora sp. L5]
          Length = 719

 Score = 95.3 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 73/259 (28%), Gaps = 32/259 (12%)

Query: 18  FKLIPLRLGDKRPQRLG--KWEEQLLSSEKIDKL---------PACGFGFVCG----VGE 62
           ++ IPL  G K P       W     S E++++          P  G     G       
Sbjct: 20  WRPIPLPPGKKSPVPDAVTGWSNPQPSREQVEEWVTSGRFTVDPKNGVKLRAGNIALRLG 79

Query: 63  QPLYAFDIDSKDEKTANTFKDTFEILHG--TPIVRIGQKP---KILIPFRMNKEGIKKKK 117
             L   D+D+ D+K         +   G   P  R   +      +  FR      +   
Sbjct: 80  HGLIGVDVDAYDDKPGAETFKVLQERLGDLPPTWRSSSRDDGISGIYLFRCRPGRRRGSP 139

Query: 118 TTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDT---PLLSEEDVEYL 173
             E   G ++ +  G +Y +       + ++Y W   P    +ED    P       E  
Sbjct: 140 APEDG-GGIEFVQYGHRYVICAPSLHPSGRQYVW-FSPDGEALEDEAPDPEELPWLPEAW 197

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN----REITAFLSCFGEEFYNGSHDEW 229
            ++       + +D   +  ++                  +    +       +    + 
Sbjct: 198 DRYLMRDDPVVGEDAPELPDAEVAGWIAEDSAEPCAQMARLITKTAGELALRGSSGAHDI 257

Query: 230 IPVVMAVHHETRGSSKGKE 248
                 +    R S++G  
Sbjct: 258 TRDG--LWQAIRDSAQGHR 274


>gi|304379979|ref|ZP_07362708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|269939555|emb|CBI47914.1| hypothetical protein SATW20_00320 [Staphylococcus aureus subsp.
           aureus TW20]
 gi|304341559|gb|EFM07469.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
          Length = 547

 Score = 95.3 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 110/364 (30%), Gaps = 23/364 (6%)

Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
           Y             L ++   +   +     ++F             +            
Sbjct: 70  YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSELFIFKVNGWQKINGDELQGLISKMIQVL 128

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKE 449
             + +   + ST +++  G   S   + L  + R++G  + + DL T       +    +
Sbjct: 129 --LVDYKPSLSTLKNVVDGLQKSTDVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPK 186

Query: 450 LYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
             +  S  T  V  +     F   +       +++  +  +   + L    K +R + + 
Sbjct: 187 TRLNLSLSTNDVITDKIPPYFKQYMLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILY 246

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G   +GKS  + L+K  F ++ +++   +++                 L+   ++   E 
Sbjct: 247 GGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG---------RFDKESLIDKSLMASHEI 297

Query: 568 NENDEIN--AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWW 624
            ++          K++   + M      G T  E           N  L        A  
Sbjct: 298 GQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALE 356

Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
           RR  +IP +  +   D S   KL+     E   + +   +  +   ++        +   
Sbjct: 357 RRINIIPCEYYVEKADTSLIDKLQ-SEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITH 415

Query: 685 EERQ 688
           +   
Sbjct: 416 DWLN 419


>gi|125975335|ref|YP_001039245.1| prophage Lp4 protein 7, DNA replication [Clostridium thermocellum
           ATCC 27405]
 gi|125715560|gb|ABN54052.1| prophage Lp4 protein 7, DNA replication [Clostridium thermocellum
           ATCC 27405]
          Length = 266

 Score = 95.0 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 65/250 (26%), Gaps = 34/250 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G +       E+I K  
Sbjct: 5   DAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKKWW 64

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T   L    +  +     +   F
Sbjct: 65  TKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKL-PDTVTAVTGGGGLHYIF 122

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           + ++   +            D    G   V       +  +Y W      F  +      
Sbjct: 123 KYSQG--RSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFD-KTLAEAP 179

Query: 167 EEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFG 218
           E  +      E L   F+  ++     + S   + T        R  T   I   L    
Sbjct: 180 EWLLKLMEREEVLLTPFEGRSIVAGIKEGSRNSTLTSLAGTMRARGMTEEGIYTALLAEN 239

Query: 219 EEFYNGSHDE 228
               N   DE
Sbjct: 240 NARCNPPLDE 249


>gi|166197581|dbj|BAG06190.1| hypothetical protein [Staphylococcus aureus]
 gi|221148470|gb|ACL99831.1| hypothetical protein [Staphylococcus pseudintermedius]
 gi|238768495|dbj|BAH66807.1| hypothetical protein [Staphylococcus aureus]
 gi|283469260|emb|CAQ48471.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
 gi|288964701|gb|ADC79458.1| hypothetical protein [Staphylococcus aureus]
          Length = 547

 Score = 95.0 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 110/364 (30%), Gaps = 23/364 (6%)

Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
           Y             L ++   +   +     ++F             +            
Sbjct: 70  YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSELFIFKVNGWQKINGDELQGLISKMIQVL 128

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKE 449
             + +   + ST +++  G   S   + L  + R++G  + + DL T       +    +
Sbjct: 129 --LVDYKPSLSTLKNVVDGLQKSTDVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPK 186

Query: 450 LYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
             +  S  T  V  +     F   +       +++  +  +   + L    K +R + + 
Sbjct: 187 TRLNLSLSTNDVITDKIPPYFKQYMLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILY 246

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G   +GKS  + L+K  F ++ +++   +++                 L+   ++   E 
Sbjct: 247 GGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG---------RFDKESLIDKSLMASHEI 297

Query: 568 NENDEIN--AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWW 624
            ++          K++   + M      G T  E           N  L        A  
Sbjct: 298 GQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALE 356

Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
           RR  +IP +  +   D S   KL+     E   + +   +  +   ++        +   
Sbjct: 357 RRINIIPCEYYVEKADTSLIDKLQ-SEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITH 415

Query: 685 EERQ 688
           +   
Sbjct: 416 DWLN 419


>gi|311063734|ref|YP_003970459.1| DNA primase [Bifidobacterium bifidum PRL2010]
 gi|310866053|gb|ADP35422.1| DNA primase [Bifidobacterium bifidum PRL2010]
          Length = 271

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 74/211 (35%), Gaps = 6/211 (2%)

Query: 553 LIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
           L  L     VI  E +    ++ A  +K +  GD       +                 N
Sbjct: 2   LEPLTRVSAVITDENDTGTFVDDAAALKSVITGDPFQLNRKFKAP-RNVLFRGFMIQCVN 60

Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
           +   +R+  ++ +RR +VIPFDK     +  + +           ++ L  V A  +   
Sbjct: 61  ELPKLRDKSESMYRRLLVIPFDKRFQGCERKYIKDDYLNRQD-VLEYVLYRVLA-ETDYY 118

Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
           ++D P+VC    ++ R   D  + + D+              L   Y  + ++     R 
Sbjct: 119 ELDEPDVCSALLDDFRVANDPLRQFADEIFYAASWHLLPCKFLYDLYRHWFQRNQPSGR- 177

Query: 732 RISTRTVTLNLKQKGFIGGIK-REKIEKEWK 761
            +       +++      G + +E++  + +
Sbjct: 178 MLGRNAFYESIEGLAEEWGWQLQERVRVDGR 208


>gi|281419017|ref|ZP_06250034.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
 gi|281419526|ref|ZP_06250539.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
 gi|281406817|gb|EFB37082.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
 gi|281407166|gb|EFB37427.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
 gi|316941629|gb|ADU75663.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
           1313]
          Length = 268

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 62/255 (24%), Gaps = 34/255 (13%)

Query: 3   VMQWKEQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEK 45
            M   + A +       +IPL                     K P   G ++      E+
Sbjct: 2   KMTMMDAAIKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQ 61

Query: 46  IDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK 101
           I K     P    G   G     L   D+D   ++T +  + T   L  T     G   +
Sbjct: 62  IKKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGSGGR 120

Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
               F   K   +           LD    G           +   Y W      F    
Sbjct: 121 -HYVFIYPKG--RSIPNKTKFAPGLDTRSTGGLIAVAPSIHVSGNRYEWIKDHSPFD-RT 176

Query: 162 TPLLSEEDVEYLFK--------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213
                   ++ + K            I   + +  ++   +    +   R  T   I   
Sbjct: 177 PAEAPAWLLKLMEKEEVLLTPFEGSSIIAEIKEGSRNSTLTSLAGSMRARGMTEEGIYTA 236

Query: 214 LSCFGEEFYNGSHDE 228
           L        N   DE
Sbjct: 237 LLAENNARCNPPLDE 251


>gi|167767035|ref|ZP_02439088.1| hypothetical protein CLOSS21_01553 [Clostridium sp. SS2/1]
 gi|167711010|gb|EDS21589.1| hypothetical protein CLOSS21_01553 [Clostridium sp. SS2/1]
          Length = 1387

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 61/329 (18%), Positives = 112/329 (34%), Gaps = 29/329 (8%)

Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIHI 506
           KE Y +K    P   G+ S  +  L+S  +  EE        +G  + G +K  Q+F+ +
Sbjct: 119 KEDYASKRLDYPLEPGDTS-AYEKLISTLYTEEERYK-IEWAIGSIVTGDSKTIQKFLVL 176

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G  G+GKST++N+I+  F          S         A              + I  +
Sbjct: 177 YGEAGTGKSTILNIIQKLFNGYC------STFDAKAIGSASNMFALEAFKTNPLVAIQHD 230

Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
            + +   +  ++  +   + MT    + + ++ S      F+  NK + + +      RR
Sbjct: 231 GDLSRIEDNTRLNSLVSHELMTVNEKFKSAFTNS-FKAFLFMGTNKPVKITDGKSGLIRR 289

Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG-VKAYISKG---LDVDIPEVCLKA 682
            I    D   +    S     E    ++ +   +    K    +     D  IP   L A
Sbjct: 290 LI----DVKPSGNKLSSKAYKEAFSKIDFELGAIAYHCKEVYLENPGRYDNYIPTAMLGA 345

Query: 683 KEE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
             +      D+Y  +  +    G  L        + Y  Y ++         S R     
Sbjct: 346 SNDFYNFVLDSYHIFKKEN---GTTLKAAW----EMYKTYCDEAK--VPFPFSKRNFKEE 396

Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
           LK   F    +R  +E   + +   KG +
Sbjct: 397 LKN-YFHDFNERFNMEDGSRVRSYYKGFR 424


>gi|260904380|ref|ZP_05912702.1| hypothetical protein BlinB_03562 [Brevibacterium linens BL2]
          Length = 310

 Score = 95.0 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 60/207 (28%), Gaps = 14/207 (6%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65
           A++    G  + P     KRP   G + +      ++       P    G   G     +
Sbjct: 24  AREFARAGVPVFPCAPNGKRPLTHGGFHDATTDFSQVQAWWDQIPNANIGLPTGHPS-GV 82

Query: 66  YAFDIDSKDEKTANTFKDTFEI---LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
              D+D  ++       +       L    +V         + +        ++++ ++ 
Sbjct: 83  VVVDVDLHEKVNGYDAINRAHDAGKLGHWEVVTRTPSGGAHLIY--PATPATQQRSWQAA 140

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
           +  +D  G G Y +    H     +       +R    +    +  D + L  F      
Sbjct: 141 RAGVDFRGDGGYIIVPPSHRHIDGQQH----HYRLDQVNNGPATAVDAQGLRDFLDPRPA 196

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNRE 209
               + +    +       +R  + RE
Sbjct: 197 VPAPESRGTRRTPNIAALADRVASLRE 223


>gi|125974481|ref|YP_001038391.1| hypothetical protein Cthe_1980 [Clostridium thermocellum ATCC
           27405]
 gi|125714706|gb|ABN53198.1| hypothetical protein Cthe_1980 [Clostridium thermocellum ATCC
           27405]
          Length = 266

 Score = 94.6 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 63/250 (25%), Gaps = 34/250 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G +       E+I K  
Sbjct: 5   DAAIKYAEANIPVIPLHWICEDGSCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKKWW 64

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T   L    +  +     +   F
Sbjct: 65  TKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKL-PDTVTAVTGGGGLHYIF 122

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           + ++   +           LD    G   V       +   Y W      F         
Sbjct: 123 KYSQG--RSIPNKTKFALGLDTRSTGGLIVVAPSIHVSGNRYEWIKDHSPFD-RTPAEAP 179

Query: 167 EEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFG 218
              +      E L   F+  ++     + S   + T        R  T   I   L    
Sbjct: 180 AWLLKLMEREEVLLTPFEGRSIVAGIKEGSRNSTLTSLAGTMRARGMTEEGIYTALLAEN 239

Query: 219 EEFYNGSHDE 228
               N   DE
Sbjct: 240 NARCNPPLDE 249


>gi|331089475|ref|ZP_08338374.1| hypothetical protein HMPREF1025_01957 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330404843|gb|EGG84381.1| hypothetical protein HMPREF1025_01957 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 1352

 Score = 94.6 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 111/328 (33%), Gaps = 25/328 (7%)

Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIH 505
            K+ Y +K    P   G     +  L+S  +   E        +G  + G +K  Q+F+ 
Sbjct: 122 DKKDYASKKLKYPLEAG-DLSAYNKLMSTLYSETE-RQKIEWAIGSIVCGESKKLQKFMV 179

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G  G+GKST++N+I+  F   Y +          +   +   + +L     + +V I 
Sbjct: 180 LYGAAGTGKSTVLNIIQQLFEGYYSV-------FDAKALGSSSNSFALEAFKNNPLVAIQ 232

Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
              +   I +  ++  +   + MT    + +TYS        F+  NK + + +      
Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSN-RFKCFLFMGTNKPVKITDAKSGLI 291

Query: 625 RRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
           RR + + P    +  ++     K              +          D  IP   L A 
Sbjct: 292 RRLVDVSPSGNKLGPKEYKTIMKQIEFELGAIAYHCQEIYLK-NPGMYDDYIPIAMLGAS 350

Query: 684 EE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
            +      D+Y  +  +    G  L        + Y  Y ++         S R     L
Sbjct: 351 NDFYNFIVDSYHVFKREN---GTTLKAAW----EMYKTYCDEAKVG--YPFSQRVFKEEL 401

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLK 770
           K   F    +R  +E   + +    G +
Sbjct: 402 KN-YFRDYKERFNMEDGSRVRSYYIGFR 428


>gi|169334191|ref|ZP_02861384.1| hypothetical protein ANASTE_00589 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258908|gb|EDS72874.1| hypothetical protein ANASTE_00589 [Anaerofustis stercorihominis DSM
           17244]
          Length = 410

 Score = 94.6 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/418 (11%), Positives = 115/418 (27%), Gaps = 42/418 (10%)

Query: 5   QWKEQAKQAIHNGFKLIPLRLGD------KRPQRLGKWEEQLLSSEKIDKLPACGFGFVC 58
           +W     +   +G   +P           K P     + +   +   ++     G G   
Sbjct: 16  KWCNWRYENRDSGMTKVPYNPMTNAHASVKIPS---TFTDFDSAINALNIY--DGIGIRV 70

Query: 59  GVGEQPLYAFDIDS-KDEKTANTFKDTFEILHGTPIVRIGQKP-KILIPFRMNKEGIKKK 116
              +  L A D+D   ++   ++  +      G   + I      + I   +    +  K
Sbjct: 71  ---DGKLIAIDLDHCIEDGKLSSLAEDITSHFGNTYIEISPSGTGLRIILFVADGYVYDK 127

Query: 117 KTTESTQGHLDILGCG---QYFVAYNIHPKTKKEYTWTTPP----HRFKVEDTPLLSEED 169
            T    +G +++   G   ++           +    T         +     P +++ +
Sbjct: 128 DTYHIKKGDIEVYVAGATNRFVTITGDVYLKNEIAENTDGLQWLIDTYMKRKVPTVNDLN 187

Query: 170 VEYLFKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
            E    F  + +V       K+       W  + +   +  E    L      + NG+ +
Sbjct: 188 FENRPSFLSDESVIAKATVSKQRNKFQNLWNGDISDYPSQSEADLGLVSILSFYCNGNKE 247

Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF-DFEEIGDTAKKRST 286
           +       +    R S+  +           TY E   +       +F      A     
Sbjct: 248 Q-------IDRLFRESALFRSKWDEM-HGSKTYGEITIDKALSGMKNFYSPIVPAPASED 299

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
           F         L P+ +    ++D     +F+ + +    Y  + K+W+  +         
Sbjct: 300 FDDEMNRLIALNPEDITKYPWTDIGAGMLFADFYENCLRYVPERKSWFYYENG------- 352

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
            + K     +  +         L           K   +   +   + +    +  K 
Sbjct: 353 -IWKQDVGGLKAMKLCMNLANLLHMYALKITDEHKRKSYMDYSKRWQSHGCRINILKD 409


>gi|302058867|ref|ZP_07250408.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
           tomato K40]
          Length = 897

 Score = 94.2 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 112/868 (12%), Positives = 216/868 (24%), Gaps = 190/868 (21%)

Query: 9   QAKQAIHN-GFKLIPLRLGDKRP-----QRLGKWEEQLLSSEK-IDKLPACGFGFVCGVG 61
            A++      F L+P++ G+K P      + GK+      +E    K P    G V G  
Sbjct: 11  WARRYCETFNFALVPIQPGEKGPKGRGWNQPGKYIVDPAKAEAFWTKNPNHNLGVVLGP- 69

Query: 62  EQPLYAFDIDSKD---EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK-------- 110
              + + D+D          +      + L       +G   +  I FR+ +        
Sbjct: 70  -SRVCSLDVDDVQWTRVVLYDLLGLDLDALALAFPTVVGNPLRFRILFRVPEGLDLTRHA 128

Query: 111 --------------EGIKKKKTTESTQGH-------------------LDILGCGQYFVA 137
                         + I  K       G                     ++       V 
Sbjct: 129 LAWPNENDPDGSIHKSIMLKANAARDAGDTAREALYRADAEKYKRLTVFELRAGLVQDVL 188

Query: 138 YNI-HPKTKKEYTWTTPPHRFKVEDT--------------PLLSEEDVEYLFKFFQEITV 182
               HP T + YTW TPP    +                    +E    +L K  +    
Sbjct: 189 PPSIHPGTGQPYTWRTPPDASGLPVLIGDLLNVWNNWDVFKRGAEAACPWLPKDAKPTAK 248

Query: 183 PLVKDKKSII--PSKTWTNNNNRQYTNREITA---------------------------- 212
              K K++ +     +  +  N  +   EI                              
Sbjct: 249 QKPKPKRAPVAGNRPSVIDEFNNCHDVEEILRSHGYTKRGGKWLYPQSSTGLPGITVAEG 308

Query: 213 --FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270
             +     +   NG  ++   V   + H    S   K+ AR    Q              
Sbjct: 309 KVYSHHAADPLANGHQNDAFEVFCLLEHGGDQSKAVKDAARMLGMQS------------- 355

Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT 330
                   D     +  +                +    A  +       +   L    T
Sbjct: 356 --TRPSASDLPPAPTEGSDKPDAAAPDAASEAAPAPDGGAGEELTIEQVLRRFALVEGTT 413

Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390
             W   DK+                  F   + + +  L  +  D               
Sbjct: 414 HVW-DFDKS-----------RAMKKSAFEARVGKPIAKLWLDATDKKL---IADDQVKDI 458

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS----------------SSRFLGEQDG 434
            + + +          +  E       T D+ D                  +  L    G
Sbjct: 459 EQARKMAGKKGGALGMRPTERYVYIDGTKDVWDREKKRRIAEGAVKMALGDTYALWLNSG 518

Query: 435 ---ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYFESEEVMDYF 486
              ++D+E         +           +  EP  +      L  +  +  + +     
Sbjct: 519 ERRVVDVEHIVFDPTMTKDPSIYINTFDGLPLEPVNDDAACANLRWLISFLCNHDEAAAL 578

Query: 487 T--RCVGMAL--LGGNKAQRFIHIRGVGGSGKS-TLMNLIKYAFGNQYVINAEASDIMQN 541
              R +   L  LG       +    + GSGKS    +     +G       +       
Sbjct: 579 WLTRWLAYPLQHLGAKMDTAVLMHSTMEGSGKSLLFADTFGALYGQYAATVGQTQL---- 634

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSES 600
                 ++N +  +      V     + +   N   KIK +  G  +     + N + E+
Sbjct: 635 ------ESNFNAWQSRKMWAVFEEVVSRDQRYNQVGKIKHLVTGKTVRMESKFINGWEEA 688

Query: 601 PASFTPFIVPNKHL-FVRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKW 658
                 F+        + + D    RR +V+ P +     R  +  ++LE         W
Sbjct: 689 NHMNAVFLSNEILPWPISDSD----RRMLVMWPMETLPVARQKAIGRELENGGVAALYGW 744

Query: 659 FLKGVKAYISKGLDVDIPEV----CLKAKEEERQGTDTYQAWIDDCCDIGENLWEE--SH 712
            L+      ++                ++   +        W     ++G  LW    S 
Sbjct: 745 LLRVDLGDFNERTRPPSTASRERLVALSRAGWQT---FLHLW--RYGELGRGLWGACLST 799

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTL 740
            L   + E+ ++        +S    +L
Sbjct: 800 DLYALFIEWCQRNKE---HVMSQTKFSL 824


>gi|78067109|ref|YP_369878.1| virulence-associated E family protein [Burkholderia sp. 383]
 gi|77967854|gb|ABB09234.1| Virulence-associated E family protein [Burkholderia sp. 383]
          Length = 761

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 91/644 (14%), Positives = 176/644 (27%), Gaps = 126/644 (19%)

Query: 38  EQLLSSEKIDKLPACG--FGFVCGVGEQP--LYAF-DIDSKDEKTANTFKDT-------- 84
            + L++E++      G  +G           L A  D+DS   +T               
Sbjct: 59  NRPLTNERLAHHVNGGPAYGVYPMQPGSDVTLIALLDLDSHKGETPWHEMQDTAVRIVTV 118

Query: 85  --FEILHGTPIVRIGQKPKILIPFRM---NKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
                L+G P    G     +  + +    ++    ++   S    +D L  G   VA  
Sbjct: 119 ASAAGLNGIPFRSSG--GAGIHIYFLWDEPQDAYSARQALRSILAAVD-LHDGTKGVAAG 175

Query: 140 ---IHPKTKKEYTWTTP-------------PHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
              I PK                          F+++D P     ++++        + P
Sbjct: 176 QVEIFPKQDSVSHNGYGNMFLLPLAGKSVPLDSFELDDMPKAYVTEMDW------PSSAP 229

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGS 243
           + + ++ I+               +     +   GE      +D W  V+  VHH ++GS
Sbjct: 230 VPRAEREIVVPPPAVVAPAEFGALKSALDAIPNGGE--NELDYDSWRNVLFGVHHASQGS 287

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
            +G  +   +S + S YD       W        G       T  ++         +   
Sbjct: 288 DEGLALVHEFSARSSKYDPAKTERDWGY-----AGKNQGTPITIGTIKAMAAAHGWQDPA 342

Query: 304 ASRFSDAYNKAM----------FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
                D ++             +    KG  L  A+          +   W +  D   A
Sbjct: 343 REPSEDDFDVVPVDEQEPPRPGYRRNGKGEILALAE-NIVTAVRAPHECGWHIRYDDFRA 401

Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
            +      M  DV D        + +    +           +E     K + ++L  G 
Sbjct: 402 EV------MLADVADPRGLRAFTDPDYTRLQI---------QLERRGFLKLSKEALRDGV 446

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
                 + +DS+  +L              ++                           +
Sbjct: 447 GLVADDNRIDSAVEWLA------------GLQHD-----------------GVPRIETFL 477

Query: 474 SGYFESEE------VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
             Y   E+      V  Y    + G  L  G +A     + G  G+GK+  +  +     
Sbjct: 478 RDYMAVEDTPYARAVSRYLWTALAGRVLSPGCEAPMVPVLIGEQGAGKTRAVKAL----- 532

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
               + A+              A+  +    G  +V + E       +A  IK       
Sbjct: 533 ----VPAQEFYCELKLDERDDNASRMM---RGRLVVELGELRGLHTRDAESIKAFISRTH 585

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
                 Y          F      N+  F+ +      RR++ +
Sbjct: 586 ENFVPKYKEFSVTFARRFLFVGTTNQDEFLADETG--ERRWLPV 627


>gi|13928292|dbj|BAB46984.1| hypothetical protein [Staphylococcus aureus]
          Length = 547

 Score = 93.8 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 23/361 (6%)

Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
           Y             L ++   +   +     ++F             +            
Sbjct: 70  YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSELFIFKVNGWQKINGDELQGLISKMIQVL 128

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKE 449
             + +   + ST +++  G   S   + L  + R++G  + + DL T       +    +
Sbjct: 129 --LVDYKPSLSTLKNVVDGLQKSTDVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPK 186

Query: 450 LYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
             +  S  T  V  +     F   +       +++  +  +   + L    K +R + + 
Sbjct: 187 TRLNLSLSTNDVITDKIPPYFKQYMLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILY 246

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G   +GKS  + L+K  F ++ +++   +++                 L+   ++   E 
Sbjct: 247 GGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG---------RFDKESLIDKSLMASHEI 297

Query: 568 NENDEIN--AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWW 624
            ++          K++   + M      G T  E           N  L        A  
Sbjct: 298 GQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALE 356

Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
           RR  +IP +  +   D S   KL+     E   + +   +  +   ++        +   
Sbjct: 357 RRINIIPCEYYVEKADTSLIDKLQ-SEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITH 415

Query: 685 E 685
           E
Sbjct: 416 E 416


>gi|256006172|ref|ZP_05431087.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
           2360]
 gi|255989866|gb|EEU00033.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
           2360]
          Length = 222

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 48/195 (24%), Gaps = 26/195 (13%)

Query: 3   VMQWKEQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEK 45
            M   + A +       +IPL                     K P   G ++      E+
Sbjct: 2   KMTMMDAAIKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQ 61

Query: 46  IDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK 101
           I K     P    G   G     L   D+D   ++T +  + T   L  T     G   +
Sbjct: 62  IKKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGSGGR 120

Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
               F   K   +           LD    G           +   Y W      F    
Sbjct: 121 -HYVFIYPKG--RSIPNKTKFAPGLDTRSTGGLIAVAPSIHVSGNRYEWIKDHSPFD-RT 176

Query: 162 TPLLSEEDVEYLFKF 176
                   ++ + K 
Sbjct: 177 PAEAPAWLLKLMEKE 191


>gi|266621007|ref|ZP_06113942.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288867323|gb|EFC99621.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 1448

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 114/331 (34%), Gaps = 31/331 (9%)

Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIH 505
            K+ Y +K    P   G     +  L+S  +  EE        +G  + G +K  Q+F+ 
Sbjct: 122 NKKDYASKKLNYPLEAG-DLSAYEKLMSTLYSEEE-RTKIEWAIGSIVSGESKKLQKFMV 179

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G  G+GKST++N+I+  F   Y +          +   +   + +L     + +V I 
Sbjct: 180 LYGAAGTGKSTVLNIIQQLFDGYYSV-------FDAKALGSSSNSFALEAFKTNPLVAIQ 232

Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
              +   I +  ++  +   + MT    + +TYS        F+  NK + + +      
Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSN-RFKCFLFMGTNKPVKITDAKSGLI 291

Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG-VKAYISKG---LDVDIPEVCL 680
           RR I    D   +    +  +       +E +   +    +   S      D  IP   L
Sbjct: 292 RRLI----DVSPSGNKLNPKEYKTIVKQVEFELGAIAYHCQEVYSNNPGRYDDYIPITML 347

Query: 681 KAKEE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
            A  +      D+Y  +  +    G  L        + Y  Y +          S R   
Sbjct: 348 GASNDFYNFIIDSYHVFKKEN---GTTLKAAW----EMYKTYCDDAKVG--FPFSQRVFK 398

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
             LK   F    +R  ++   + +    G +
Sbjct: 399 EELKN-YFHDFQERFNLDDGTRVRSYYIGFR 428


>gi|162452339|ref|YP_001614706.1| pseudogene [Sorangium cellulosum 'So ce 56']
 gi|161162921|emb|CAN94226.1| pseudogene [Sorangium cellulosum 'So ce 56']
          Length = 122

 Score = 93.4 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
           ++G + +   GLDV  P   ++A E  R   D  + +I D C I +  W E  +L + Y 
Sbjct: 1   MRGCREWQKHGLDV--PASIMRATEAYRAENDPLRDFIKDRCVIAQEAWVEKAALRREYE 58

Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
            +     N  +  + ++   + ++  G     KR  +      + + +G+ L+   +   
Sbjct: 59  RWCLDNGN--KYPLGSKRFAVRIRDLGAAQSTKR--VPGHSSPRDVWRGIGLRYQGDDQP 114

Query: 780 DN 781
           + 
Sbjct: 115 EG 116


>gi|320103976|ref|YP_004179567.1| Bifunctional DNA primase/polymerase [Isosphaera pallida ATCC 43644]
 gi|319751258|gb|ADV63018.1| Bifunctional DNA primase/polymerase [Isosphaera pallida ATCC 43644]
          Length = 629

 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 62/233 (26%), Gaps = 26/233 (11%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65
           A +    G+++ P   G+  P     + +     E+I++     P              L
Sbjct: 10  ALRYAELGYRVFPCAPGNSTPLTDHGFLDATTEVEQIERWWGQHPTANVAIATA----GL 65

Query: 66  YAFDIDSKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
              D+D  +   AN +                 +  +      FR    G   + T    
Sbjct: 66  LVVDLDPAEGNAANPWLKDDPDKRLDLAAAPTAMTPRGGRHHVFRKPA-GKGWRCTASRL 124

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
              +D    G Y +           Y+W          D        +  L     + T 
Sbjct: 125 APKVDTRTDGGYIIVPPSWRP-DGAYSWVPGLELDGPPDRLPEPPPWLVALLDSLAQETP 183

Query: 183 -------------PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222
                        P+ + +++   ++   N      T  EI A L    ++  
Sbjct: 184 TLAHVAAGGGQANPIPEGQRNATLARLGGNMRRVGMTLAEIAAALLQTNKDRC 236


>gi|125975306|ref|YP_001039216.1| hypothetical protein Cthe_2824 [Clostridium thermocellum ATCC
           27405]
 gi|125715531|gb|ABN54023.1| hypothetical protein Cthe_2824 [Clostridium thermocellum ATCC
           27405]
          Length = 263

 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 65/250 (26%), Gaps = 34/250 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G ++      E+I K  
Sbjct: 2   DAALKYAEANIPVIPLHWICEDGSCSCKEGSNCDSKGKHPLYTGWYKNSTAYVEQIRKWW 61

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T   L    +  +         F
Sbjct: 62  TKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATHGKL-PDTVTAVTGSGGWHYVF 119

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           +  K   +           LD    G   V       +  +Y W      F         
Sbjct: 120 KYPKG--RSIPNKTKFASGLDTRSTGGLIVVAPSIHVSGNQYQWLEGHSPFD-RTLAEAP 176

Query: 167 EEDVEYLFK--------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218
           E  ++ + +            I V + +  ++   +        R  T   I   L    
Sbjct: 177 EWLLKLMEREEVLLTPFEGSSIIVEIKEGNRNSTLTSLAGTMRARGMTEEGIYTALLAEN 236

Query: 219 EEFYNGSHDE 228
               N + DE
Sbjct: 237 NARCNPTLDE 246


>gi|291165042|gb|ADD81070.1| gp072 [Rhodococcus phage ReqiPoco6]
          Length = 1294

 Score = 93.0 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 103/328 (31%), Gaps = 24/328 (7%)

Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHI 506
           K  Y++K        G+ S  + +LV   + + E        +G  + G  K  Q+F+ +
Sbjct: 125 KTDYVSKRLPYCLAPGDYS-AWDELVGTLY-NVEERAKIEWAIGAIVSGDAKRIQKFLVL 182

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G  G+GKST++N+I+  F          +         +  A  + +      + I  +
Sbjct: 183 YGPAGTGKSTVLNVIQQMFEGY------TTTFEAKALGMSSGAFATEVFKNNPLVAIQHD 236

Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
            + +   +  ++  +   + MT    Y      +  +   F+  N  + + +      RR
Sbjct: 237 GDLSRIEDNTRLNSIISHEEMTMNEKYK-PSYTARVNAFLFMGTNNPVKISDAKSGIIRR 295

Query: 627 YIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
            I + P    I     +   +             L+  ++      +   P   +     
Sbjct: 296 LIDVHPTGIKIPPNRYNTLIQKVDFELGAIAHHCLEVYRSMGKNYYNSYRPLEMMLQT-- 353

Query: 686 ERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRIST-----RTVT 739
                D +  +I+   DI  E            Y E+ +                 R   
Sbjct: 354 -----DVFFNYIEAHFDIFKEQDSVSLKQAYALYKEFCDDTGIDKVLPQYKFREELRNYF 408

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIK 767
              K++G + G     I   + + +   
Sbjct: 409 DEFKERGVVNGQTVRSIYSGFNANKFKT 436


>gi|330470704|ref|YP_004408447.1| bifunctional DNA primase/polymerase [Verrucosispora maris
           AB-18-032]
 gi|328813675|gb|AEB47847.1| bifunctional DNA primase/polymerase [Verrucosispora maris
           AB-18-032]
          Length = 302

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 61/233 (26%), Gaps = 45/233 (19%)

Query: 15  HNGFKLIPLRLGDKRPQRLG--------------------KWEEQLLSS-EKIDK-LP-- 50
             G+ + PLR GDKRP                         WE++  +  ++I +     
Sbjct: 13  ERGWHIFPLRPGDKRPAFPDHPADRCAGRDRRCRAAGQHVGWEDRATTDPDRIRRAWSTR 72

Query: 51  ACGFGFVCGVGEQPLYAFDIDSKD-----------EKTANTFKDTFEILHGTPIVRIGQK 99
             G G  CG     L   D+D+                A+        +  T  V  G+ 
Sbjct: 73  PYGIGIACGP--SGLVVVDLDTPKHPAEADGRDGLAVLADLADTHGATIDPTYTVTTGR- 129

Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
               + ++    G   + T  +    +D    G Y VA        + Y          +
Sbjct: 130 GGTHLYYQHPNTGPALRNTAGTVGPMVDTRAAGGYVVAAGSIVA-GRPYVVALDCDPDPL 188

Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
                        L         P+V D  +            R+       A
Sbjct: 189 ------PAWLAGMLAPAPLPPQRPVVVDLPTDRAGAYVRAAVGREVDRVTAAA 235


>gi|29566880|ref|NP_818445.1| gp145 [Mycobacterium phage Omega]
 gi|29425605|gb|AAN12787.1| gp145 [Mycobacterium phage Omega]
          Length = 219

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 53/165 (32%), Gaps = 22/165 (13%)

Query: 2   PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFV 57
           P   W   AK     G+ + PL  G+KRP     +++      +I K     P    G  
Sbjct: 68  PAALW--YAK---RAGWAVFPLVPGEKRPATKNGFKDATRDEAQIRKWWTENPNYNIGLP 122

Query: 58  CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ--KPKILIPFRMNKEGIKK 115
            G         DID  +       K   E+  G      G+   P+    + +       
Sbjct: 123 TGRAA-GFDVVDIDGPEG-----MKSLAELGEGVLPDVHGKVATPRGFHLY-VAGTDDGN 175

Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
           +      +  +D    G + VA        K+Y+W   P    ++
Sbjct: 176 RAGV---RPGIDYRSTGGFVVAVPSVV-NGKQYSWVVRPSPEILK 216


>gi|291164934|gb|ADD80963.1| gp072 [Rhodococcus phage ReqiPepy6]
          Length = 1294

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 103/328 (31%), Gaps = 24/328 (7%)

Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHI 506
           K  Y++K        G+ S  + +LV   + + E        +G  + G  K  Q+F+ +
Sbjct: 125 KTDYVSKRLPYCLAPGDYS-AWDELVGTLY-NVEERAKIEWAIGAVVSGDAKRIQKFLVL 182

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G  G+GKST++N+I+  F          +         +  A  + +      + I  +
Sbjct: 183 YGPAGTGKSTVLNVIQQMFEGY------TTTFEAKALGMSSGAFATEVFKNNPLVAIQHD 236

Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
            + +   +  ++  +   + MT    Y      S  +   F+  N  + + +      RR
Sbjct: 237 GDLSRIEDNTRLNSIISHEEMTMNEKYK-PSYTSRVNAFLFMGTNNPVKISDAKSGIIRR 295

Query: 627 YIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
            I + P    I     +   +             L+  ++      +   P   +     
Sbjct: 296 LIDVHPTGIKIPPNRYNTLIQKVDFELGAIAHHCLEVYRSMGKNYYNSYRPLEMMLQT-- 353

Query: 686 ERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRIST-----RTVT 739
                D +  +I+   DI  E            Y E+ +                 R   
Sbjct: 354 -----DVFFNYIEAHFDIFKEQDSVSLKQAYALYKEFCDDTGIDKVLPQYKFREELRNYF 408

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIK 767
              K++G + G     I   + + +   
Sbjct: 409 DEFKERGVVNGQTVRSIYSGFNANKFKT 436


>gi|283481673|emb|CAZ69789.1| putative nucleic acid independent nucleoside triphosphatase
           [Emiliania huxleyi virus 99B1]
          Length = 675

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 138/420 (32%), Gaps = 44/420 (10%)

Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK----KDK 338
             S + SL  +   +        +        + +     ++ Y    K  YK    KD 
Sbjct: 149 NSSRYASLTKYETAVNIISDTDLKPHQQVENHILNQL--DNYGYRHYKKYCYKRIVTKDN 206

Query: 339 NNVYIWSLTLDKITASIMNFLVSMKE-DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
           + V+ W    +K+T  I N L   K   ++ L       N N+   RF      + + + 
Sbjct: 207 SPVFAWERK-EKVTDFIPNELTMEKNYAMYKLYTHAPSYNMNAHLSRFLTEDSKQIRFLP 265

Query: 398 ENS--------------KAKSTAQSLEAGSIFSITSDLLDS----SSRFLGE--QDGILD 437
            N               K  +     +  +   IT   +D         +     +G   
Sbjct: 266 LNPNRHIYSCINGIYHTKHCAFYDYADEQNWPQITQQAIDRMVKYDPSAVDFVPPNGNDT 325

Query: 438 LETGQKVKPTKELYITKSTGT-PFVEG-EPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
                + +     YI   T            ++F +++     + + ++     +G    
Sbjct: 326 CLRHYEYEFKHGDYINNCTDFMDIDPSVFKCRDFDNVLEYQKLTPDTIENIYGLIGRLFF 385

Query: 496 GGNKA---QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
              +    Q  +  +GV GSGKS+++NLI   F  + +    ++   Q           S
Sbjct: 386 ETKQYDDMQLLLFFKGVAGSGKSSVLNLISECFDPEAIGILNSNCQDQ----------FS 435

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           L  +  + IVI  E   +   N A ++Q   G+ +T       +Y +   +    +  N+
Sbjct: 436 LEHIADAHIVITYEAKRDFRFNQATLQQCVSGEGVTIVRKGEKSY-DKKWTAPFVMAGNE 494

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
               ++   +  RR +++PF+  +  +D     ++         K+ +   +  I     
Sbjct: 495 LPGWKDAAGSMARRLVLVPFNHRVIEQDEELGDRMSKDILEYIPKFTIMYRQMTIRSNKK 554


>gi|159037549|ref|YP_001536802.1| bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205]
 gi|157916384|gb|ABV97811.1| Bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205]
          Length = 377

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 74/266 (27%), Gaps = 50/266 (18%)

Query: 15  HNGFKLIPLRLGDKRPQRLG--------------------KWEEQLLSS-EKIDK-LPA- 51
             G+++ PLR  DKRP                         WE +  +  ++I +   A 
Sbjct: 90  ARGWRVFPLRPDDKRPAFPDHPADDCTGRDPRCRNAGCHLGWEPRATTDPDRIRRAWTAR 149

Query: 52  -CGFGFVCGVGEQPLYAFDIDSKDEK----------TANTFKDTFEILHGTPIVRIGQKP 100
             G G  CG     L   D+D   +            A         +  T  V  G+  
Sbjct: 150 PYGIGLACGPSH--LVVVDLDVPKDDSGGGPSGTDTLAALASQHGASIDATYTVTTGR-G 206

Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
              + +R    G   + T  +    +D    G Y VA        + YT +       + 
Sbjct: 207 GTHLYYRHPDGGPDLRNTAGTLGPMVDTRAHGGYVVAAGS-TAAGRPYTVSLDTDPAPLP 265

Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
                      +L         PL   +  ++        +  +       A ++   + 
Sbjct: 266 A----------WLAGLLAPA--PLPPQRPVVVELPGGRERSYVRAAVERECASVTGAPDH 313

Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKG 246
             +  +   I +   V   +  + + 
Sbjct: 314 HNDALYFASIALGQLVAGGSLSADEA 339


>gi|168702949|ref|ZP_02735226.1| hypothetical membrane protein [Gemmata obscuriglobus UQM 2246]
          Length = 805

 Score = 92.6 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 76/308 (24%), Gaps = 52/308 (16%)

Query: 10  AKQAIHNGFKLIPLRL-----------------------GDKRPQRLGKWEEQLLSSEK- 45
           A      G++++PL                           K P+     +E  +   + 
Sbjct: 12  ALDYAGRGWRVVPLHGCVADERRTDGQVGCSCGNPECGSQGKHPRLKAWQKEASVDPAQV 71

Query: 46  ---IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIG--QKP 100
                  P    G   G  E  + A D+D+K  +         + L G  + R    +  
Sbjct: 72  GTWWAAWPEANVGVALG-PESGVVAIDVDTKAGE------QLVKELAGDAVERTALFRTG 124

Query: 101 KIL-IPFRMNKEGIKKKKTTESTQGHLD---ILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156
           K   + + +  +      T     G  +       G   V       +   Y W      
Sbjct: 125 KGHRLLYAVPADLPAPPATRAVKLGGSEAVRFQSTGSQCVMPPSLHPSGNFYEWVEGRDP 184

Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216
                 P + +  V  + +          +  +         N +   Y +    A  + 
Sbjct: 185 AACPVAP-MPDWLVAEMCRPNSP--EWTDQGAREAFLEGKDFNRDADWYRDILEPAGFTP 241

Query: 217 FGE-----EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
            G+      F        I V +  +    GS         +S      D      K+  
Sbjct: 242 AGQANGVMRFTRPGKRSGISVTVGHYRARDGSPALY----VFSGSIPGLDAGRCYDKFGA 297

Query: 272 FDFEEIGD 279
           +     G 
Sbjct: 298 YTKLHHGG 305


>gi|220923968|ref|YP_002499270.1| bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
           2060]
 gi|219948575|gb|ACL58967.1| Bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
           2060]
          Length = 970

 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 63/261 (24%), Gaps = 42/261 (16%)

Query: 10  AKQAIHNGFKLIPLRLGDKRP---------QRLGKWEEQLLSSEKIDKL----PACGFGF 56
           A      G+ + P     K+P          + G         ++I       P    G 
Sbjct: 13  ALDYATRGWPVFPCSPTTKQPLTRKESAPGAKDGGLHLATTDEDQIRAWWTKHPRAMIGI 72

Query: 57  VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI---GQKPKILIPFRM----- 108
             G     +   D+      T   + +      G              + + FR      
Sbjct: 73  PTGARTGNVLDLDLGDPAVITGAAYLERLREHVGGIPETAIAETGSGGLHLWFRADPDAP 132

Query: 109 --------------NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP 154
                           EG  +    ++    +D+ G G Y +      +  + YTW   P
Sbjct: 133 IANGANICPALFIPPTEGATRADGRKAKGAAIDVRGEGGYVIVPPSVREDGRAYTWCPGP 192

Query: 155 HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL 214
                +     +E  +  + K           +  S  P   W              A  
Sbjct: 193 E----DGLSPPTEALLRLMRKEEARAARDAQTEAASRGP---WAPRPADGSDPARSLAEG 245

Query: 215 SCFGEEFYNGSHDEWIPVVMA 235
                 +   + D+ I  V A
Sbjct: 246 DEAVVRYGRAALDKEIAAVAA 266


>gi|125974515|ref|YP_001038425.1| hypothetical protein Cthe_2020 [Clostridium thermocellum ATCC
           27405]
 gi|125714740|gb|ABN53232.1| hypothetical protein Cthe_2020 [Clostridium thermocellum ATCC
           27405]
          Length = 263

 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 64/250 (25%), Gaps = 34/250 (13%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G ++      E+I K  
Sbjct: 2   DAALKYAEANIPVIPLHWICEDGSCSCKEGSNCDSKGKHPLYTGWYKNSTAYVEQIRKWW 61

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T   L    +  +         F
Sbjct: 62  TKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATHGKL-PDTVTAVTGSGGWHYVF 119

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           +  K   +           LD    G   V       +  +Y W      F         
Sbjct: 120 KYPKG--RSIPNKTKFASGLDTRSTGGLIVVAPSIHVSGNQYQWLEGHSPFD-RTPAEAP 176

Query: 167 EEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFG 218
              +      E L   F+  ++     + S   + T    +   R  T   I   L    
Sbjct: 177 AWLLKLMEREEVLLTPFEGSSIIAEIKEGSRNSTLTSLAGSMRARGMTEEGIYTALLAEN 236

Query: 219 EEFYNGSHDE 228
               N   DE
Sbjct: 237 NARCNPPLDE 246


>gi|73852933|ref|YP_294217.1| putative nucleic acid independent nucleoside triphosphatase
           [Emiliania huxleyi virus 86]
 gi|72415649|emb|CAI65886.1| putative nucleic acid independent nucleoside triphosphatase
           [Emiliania huxleyi virus 86]
          Length = 675

 Score = 92.3 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/386 (16%), Positives = 129/386 (33%), Gaps = 52/386 (13%)

Query: 322 GHFLYTADTKAWYK----KDKNNVYIWSLTLDKITASIMNFLVSMKE-DVFDLSEEPEDN 376
            ++ Y    K  YK    KD + V+ W    +K+T  I N L   K   ++ L       
Sbjct: 186 DNYGYRHYKKYCYKRIITKDNSPVFAWERK-EKVTDFIPNELTMEKNYAMYKLYTHAPSY 244

Query: 377 NKNSKSPRFWFNTDYRRQNVEENS--------------KAKSTAQSLEAGSIFSITSDLL 422
           N N+   RF      + + +  N               K  +     +  +   IT   +
Sbjct: 245 NMNAHLSRFLTEDSKQIRFLPLNPNRHIYSCINGIYHTKHCAFYDYTDEQNWPQITQQAI 304

Query: 423 DS----SSRFLGE--QDGILDLETGQKVKPTKELYITKSTGT-PFVEG-EPSQEFLDLVS 474
           D         +     +G        + +     YI   T            ++F +++ 
Sbjct: 305 DRMVKYDPSAVDFVPPNGNDTCLRHYEYEFKHGDYINNCTDFMDIDPSVFKCRDFDNVLE 364

Query: 475 GYFESEEVMDYFTRCVGMALLGGN--------KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
               + + ++         L+G            Q  +  +GV GSGKS+++NLI   F 
Sbjct: 365 YQKLTPDTIENI-----YGLIGRLFFETKQFDDMQLLLFFKGVAGSGKSSVLNLISECFD 419

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
            + +    ++   Q           SL  +  + IVI  E   +   N A ++Q   G+ 
Sbjct: 420 PEAIGILNSNCQDQ----------FSLEHIADAHIVITYEAKRDFRFNQATLQQCVSGEG 469

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
           +T       +Y +   +    +  N+    ++   +  RR +++PF+  +  +D     +
Sbjct: 470 VTIVRKGEKSY-DKKWTAPFVMAGNELPGWKDAAGSMARRLVLVPFNHRVIEQDEELGDR 528

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLD 672
           +         K+ +   +  I     
Sbjct: 529 MSKDILEYIPKFTIMYRQMTIRSNKK 554


>gi|153815791|ref|ZP_01968459.1| hypothetical protein RUMTOR_02036 [Ruminococcus torques ATCC 27756]
 gi|145846816|gb|EDK23734.1| hypothetical protein RUMTOR_02036 [Ruminococcus torques ATCC 27756]
          Length = 1354

 Score = 91.9 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 112/337 (33%), Gaps = 28/337 (8%)

Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIH 505
            K+ Y +K    P   G     +  L+S  +   E        +G  + G +K  Q+F+ 
Sbjct: 122 DKKDYASKKLKYPLEAG-DLSAYNKLMSTLYSETE-RQKIEWAIGSIVCGESKKLQKFMV 179

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G  G+GKST++N+I+  F   Y +          +   +   + +L     + +V I 
Sbjct: 180 LYGAAGTGKSTVLNIIQQLFEGYYSV-------FDAKALGSSSNSFALEAFKNNPLVAIQ 232

Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
              +   I +  ++  +   + MT    + +TYS        F+  NK + + +      
Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSN-RFKCFLFMGTNKPVKITDAKSGLI 291

Query: 625 RRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
           RR + + P    +  ++     K              +          D  IP   L A 
Sbjct: 292 RRLVDVSPSGNKLGPKEYKTIMKQIEFELGAIAYHCQEIYLK-NPGMYDDYIPIAMLGAS 350

Query: 684 EE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
            +      D+Y  +  +    G  L        + Y  Y ++         S R     L
Sbjct: 351 NDFYNFIVDSYHVFKREN---GTTLKAAW----EMYKTYCDEAKVG--YPFSQRVFKEEL 401

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA-FESV 778
           K   +    K     ++    R    ++ +   FE  
Sbjct: 402 KN--YFRDYKERFNMEDGSRVRSYY-IRFRTEKFEEE 435


>gi|170739472|ref|YP_001768127.1| bifunctional DNA primase/polymerase [Methylobacterium sp. 4-46]
 gi|168193746|gb|ACA15693.1| Bifunctional DNA primase/polymerase [Methylobacterium sp. 4-46]
          Length = 289

 Score = 91.9 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 64/242 (26%), Gaps = 37/242 (15%)

Query: 10  AKQAIHNGFKLIPL----------------RLGDKRPQR-------LGKWEEQLLSSEKI 46
           A     NG  + PL                    + P +          +++    +  +
Sbjct: 9   ASWLAENGAPVFPLHGILRADDGSLACTCGNPNCRHPGKHPMARFAPSGFKDATTDTRAV 68

Query: 47  DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
            +     P    G   G         D+D +    A       E       VR       
Sbjct: 69  RQWFEAVPGANIGMATGKVT----IIDVDPRHGGDATLAALEAEHGPLPHTVRARTGGGG 124

Query: 103 LIPFRMNKEGIKKKKTTESTQG---HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
              F     G+      +        LD+ G G Y VA      +   Y W+   H  + 
Sbjct: 125 QHIFFRPPAGVTVGCYGDPNSPLGHGLDVRGAGGYIVAVGSDHISGGRYEWSAEHHPLRG 184

Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
                L E     L K  ++   P+ + ++ +           R     ++  +L C   
Sbjct: 185 APVAPLPEWMAARLAKPERKAARPVSEWRELVT---EGVTEGGRNTAVAKLAGYLICRHV 241

Query: 220 EF 221
           +F
Sbjct: 242 DF 243


>gi|227496702|ref|ZP_03926977.1| bifunctional DNA primase/polymerase [Actinomyces urogenitalis DSM
           15434]
 gi|226833799|gb|EEH66182.1| bifunctional DNA primase/polymerase [Actinomyces urogenitalis DSM
           15434]
          Length = 290

 Score = 91.5 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%)

Query: 7   KEQAKQAIHNGFKLIPLRL---GDKRPQRLGKWEEQLLSSEK----IDKLPACGFGFVCG 59
           +E A      G++++P        K P     +++   S E      ++ P    G V  
Sbjct: 6   REAATAYAVAGWQVLPCHPAGDRAKSPMLTHGFKDASTSPEAVAAWWEQWPTALIGLVV- 64

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVR----IGQKPKILIPFRMNKEGIKK 115
                    DID ++ +  +      + L G          G+       +       + 
Sbjct: 65  --PPGAVVVDIDPRNLEEGSNPSTVLDDLTGPLPDTLTSWSGRGDGGRHLWFAAPALPEG 122

Query: 116 KKTTESTQGHLDILGCGQ-YFVAYNI-HPKTKKEYTWTT--------------PPHRFKV 159
           ++   +    +D+   G+ Y +A    HP T + Y W                       
Sbjct: 123 RRWR-NPAPGVDVKSPGRGYVIAPPSPHPATGQPYRWQDTATGYARLPLPALSALAPSDG 181

Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVK 186
           ++ P         L         P+ +
Sbjct: 182 QEGPQQPRRGPFALPWQPGTPAPPVGR 208


>gi|291335469|gb|ADD95081.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C348]
          Length = 231

 Score = 91.5 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 19/179 (10%)

Query: 18  FKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGF----GFVCGVG---EQPLYAFDI 70
           + L PL  G+ +      W+ +  S + I +    G     G + G            DI
Sbjct: 26  WPLTPL--GENKNPYKAGWQNKPFSVKDIAREIEEGVCKAVGLLGGPVYNEPYGFVWVDI 83

Query: 71  D---SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK-KKT-----TES 121
           D      +      +   + L  T  +  G++ +    +R+ K+   K  +       E 
Sbjct: 84  DGITVYKKIEELAGEPVAKALPPTLTICSGREGRERKLYRVPKQLWDKFIRNKYCWHAEG 143

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
            +  L++L      V   +HPKT   YT         V + P +    +  +    +  
Sbjct: 144 NREKLEVLWKRHQGVLMGMHPKTDGYYTKEN-EDFTFVSNIPDIPAWLLTEIAIKIKSK 201


>gi|55416830|gb|AAV50480.1| helicase III/ VV D5-type ATPase (N-term) [Acanthamoeba polyphaga
           mimivirus]
          Length = 582

 Score = 91.1 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/273 (9%), Positives = 63/273 (23%), Gaps = 21/273 (7%)

Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS---KTWTNNNNRQYTNREITAFLSCFGE 219
           PL  +  ++ + +     T      K +         +    + +         L     
Sbjct: 315 PLAIDAKLKKIKEKINNNTNNTNTHKNTAELGDHHFNFIKAVSEETLVE--AKNLVKLFS 372

Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIG 278
                 +  W  V   + +      +  E    +SK+    + +E     W   + +   
Sbjct: 373 VQRATDYHTWYQVGRCLSNI---DHRLLEDWITFSKKCPSKFKKEECERLWRNMNMKPSN 429

Query: 279 ---------DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329
                     +      +  +       + K  + +       K +   YK  +   +  
Sbjct: 430 YTMATLHYFASKDDPDKYFEMKKLKIDGLIKEGMEASH-HTIAKLLIEKYKFIYKCASIK 488

Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP--EDNNKNSKSPRFWF 387
              WY+   +                   +         L  E   +D     +      
Sbjct: 489 NGIWYEFRNHRWIEIDSAYTLRNLISEVLVNEYANRQRILFGEATRQDAENKKEKFNDAV 548

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           N     + +  N+      +      +  I S 
Sbjct: 549 NITKVIKQLNNNTFKIGVIKECADMHMILIFSR 581


>gi|323485201|ref|ZP_08090552.1| hypothetical protein HMPREF9474_02303 [Clostridium symbiosum
           WAL-14163]
 gi|323401520|gb|EGA93867.1| hypothetical protein HMPREF9474_02303 [Clostridium symbiosum
           WAL-14163]
          Length = 1447

 Score = 91.1 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 111/328 (33%), Gaps = 25/328 (7%)

Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIH 505
            K+ Y +K    P   G     +  L+S  +  EE        +G  + G +K  Q+F+ 
Sbjct: 122 NKKDYASKKLNYPLEAG-DLSAYEKLMSTLYSEEE-RTKIEWAIGSIVSGESKKLQKFMV 179

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G  G+GKST++N+I+  F   Y +          +   +   + +L     + +V I 
Sbjct: 180 LYGAAGTGKSTVLNIIQQLFDGYYSV-------FDAKALGSSSNSFALEAFKTNPLVAIQ 232

Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
              +   I +  ++  +   + MT    + +TYS        F+  NK + + +      
Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSN-RFKCFLFMGTNKPVKITDAKSGLI 291

Query: 625 RRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
           RR I + P    +  ++     K              +          D  IP   L A 
Sbjct: 292 RRLIDVSPSGNKLNPKEYKTIVKQVEFELGAIAYHCQEVYLG-NPGRYDDYIPITMLGAS 350

Query: 684 EE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
            +      D+Y  +  +    G  L        + Y  Y +          S R     L
Sbjct: 351 NDFYNFIIDSYHVFKKEN---GTTLKAAW----EMYKTYCDDAKVG--FPFSQRVFKEEL 401

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLK 770
           K   F    +R  ++   + +    G +
Sbjct: 402 KN-YFHDFQERFNLDDGTRVRSYYIGFR 428


>gi|254366071|ref|ZP_04982116.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|134151584|gb|EBA43629.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
           Haarlem]
          Length = 240

 Score = 91.1 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 38/148 (25%), Gaps = 11/148 (7%)

Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
             + W                 + E    LS+   D    +   +            E  
Sbjct: 59  GWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESA 107

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
           S          A   F+ T   LDS    L   +G LDL T +         ITK     
Sbjct: 108 SGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGA 167

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFT 487
           +     S  +   ++     E V  +  
Sbjct: 168 YQSDTESPLWQAFLTRVLPDEGVRGFLQ 195


>gi|240145191|ref|ZP_04743792.1| putative primase [Roseburia intestinalis L1-82]
 gi|257202726|gb|EEV01011.1| putative primase [Roseburia intestinalis L1-82]
          Length = 242

 Score = 91.1 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 72/225 (32%), Gaps = 9/225 (4%)

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
             L    +++  +           +K + T    M        +Y     +         
Sbjct: 1   ADLEHIHLLVDDDMKMEVLKQTNYVKSIVTAQGKMDLERKSVQSYQGWMYARLLAFSNGD 60

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
              + +  + ++RR +++   +  A+R  D   A+K++         W  +G++   +  
Sbjct: 61  LQSLYDRSNGFYRRQLILTTKEKPADRVDDPDIAEKMKL-EIEGIFLWAFEGLQRLAANN 119

Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNY 728
                    L  ++  ++  +    +++      +  ++   S  L   Y  + ++    
Sbjct: 120 FRFTESLRTLNNRKYVKRDANNAIDFMESTGYIRLKADMSVTSKELYAIYGIWCDENGLT 179

Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
               I  R+ +  L +      ++          +R+   L ++P
Sbjct: 180 ---PIRQRSFSDFLMRNLKTYNLEHTNTVTNATGRRVWGYLGIEP 221


>gi|307294812|ref|ZP_07574654.1| Bifunctional DNA primase/polymerase [Sphingobium chlorophenolicum
           L-1]
 gi|306879286|gb|EFN10504.1| Bifunctional DNA primase/polymerase [Sphingobium chlorophenolicum
           L-1]
          Length = 694

 Score = 91.1 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 50/169 (29%), Gaps = 12/169 (7%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKLPAC--GFGFVCGVGE 62
           W  +       G   IP+   DK+P  +    + +  S E+I    A     G   G   
Sbjct: 11  WNTRFSDIYRLGLSPIPVLPKDKKPAIQWKVLQTERASVEQIKVWDASSFNVGIATGRLS 70

Query: 63  QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
             +  FD D+ + +      D        P+    +  K       +  G   +      
Sbjct: 71  N-VIVFDTDNVEAEQFMANLDL-------PVTAKSKTAKGYHWMFAHP-GFAVRNHVRLE 121

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
           +  LD+ G G + VA          Y W   P        P      +E
Sbjct: 122 KYKLDVRGDGGFIVAPPSIHPDGSIYQWVNHPMDVGFAQAPADLLALLE 170



 Score = 68.8 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 92/265 (34%), Gaps = 33/265 (12%)

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
             GI D            +   + +    + G+PS  F D ++     +   ++  + + 
Sbjct: 349 PAGIYD------HNGRPYVNSYRPSDVEPLSGDPSP-FEDFLAYLVPDQAEREHLVKYIA 401

Query: 492 MAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
             +     K Q  I ++G  G+GK+TL ++     G        + ++            
Sbjct: 402 WTVRYPARKLQHAILMKGAQGTGKTTLSHIWAKLVGEWNFRPTTSEEMNSGWH------- 454

Query: 551 PSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                L G  +V++ E N    +    K+K +  G  ++     G    E P        
Sbjct: 455 ---YFLEGKILVVLEEMNLGAGLTVYNKLKDLITGPTVSVNKK-GKDIREVPNFTNLVCF 510

Query: 610 PN--KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET--KYTLEAKKWFLKGVKA 665
            N    + + N D    RR+ VI  D P   R+A++ ++  T  K  +      +   ++
Sbjct: 511 SNLPNPILIENDD----RRFFVI--DSPAVRREAAYYREFNTWWKENIGV---VMSFFQS 561

Query: 666 YISKGLDVDIPEVCLKAKEEERQGT 690
                 D   P    +AKE  +  +
Sbjct: 562 VDLDDFDPMAPPPVTEAKERLKAAS 586


>gi|256377802|ref|YP_003101462.1| Bifunctional DNA primase/polymerase [Actinosynnema mirum DSM 43827]
 gi|255922105|gb|ACU37616.1| Bifunctional DNA primase/polymerase [Actinosynnema mirum DSM 43827]
          Length = 271

 Score = 90.7 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 56/214 (26%), Gaps = 23/214 (10%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLY 66
           A  A+  G+ +IPLR G K P             +++           G  C      L 
Sbjct: 7   ALAAVERGWPVIPLRPGGKAPVLRDWDRRATADPDRVRAWWARAPFNVGIAC--RGAGLL 64

Query: 67  AFDIDSKDEKTANTFKDTFEILHGTPIV-RIGQK-PKILIPFRMNKEGIKKKKTTESTQG 124
             D+D          ++ FE L  +P+  R+G         FR     +           
Sbjct: 65  VVDLDVPGG------REVFEGLGSSPVTYRVGTPSGGEHRYFRAPPVRLGNSAGR--LGP 116

Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF-KFFQEITVP 183
            +D  G G Y VA     +    Y                  E  V  L       +   
Sbjct: 117 RVDTRGVGGYVVAAGSAVR-GVRYRVLCDEPVAP------APEWLVAALAPAPRSPVAPA 169

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217
           +    + +   +        +     +    +  
Sbjct: 170 VNPSSRRVRAYRDAVVAGEVERVRGALPGTRAHV 203


>gi|312199632|ref|YP_004019693.1| bifunctional DNA primase/polymerase [Frankia sp. EuI1c]
 gi|311230968|gb|ADP83823.1| Bifunctional DNA primase/polymerase [Frankia sp. EuI1c]
          Length = 311

 Score = 90.7 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 46/162 (28%), Gaps = 17/162 (10%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-----IDKLPACGFGFVCGVGEQP 64
           A      G  + P+R G K P    KW  +     +      ++ PA      C      
Sbjct: 12  ALALARRGMHVFPVRPGSKAPMV--KWGTEATVDPEVIAGWWERWPAASIAVAC--KPSG 67

Query: 65  LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ-KPKILIPFRMNK-EGIKKKKTTEST 122
           L   D+D    + +            T  V  G+    I   +R    +     K     
Sbjct: 68  LTVVDVDGPAGRASWQALTARHGQAPTTSVTTGRDDGGIHYWYRAPHVDPPGNSKGLVGA 127

Query: 123 QGHLDIL----GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
              +D+     G G   +A      + + Y W       ++ 
Sbjct: 128 --GIDVRGAGEGAGGMVLAPPSRHPSGRRYQWCDRLSLAELP 167


>gi|126727690|ref|ZP_01743522.1| Hypothetical prophage lsa1protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126703106|gb|EBA02207.1| Hypothetical prophage lsa1protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 184

 Score = 90.7 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 21/183 (11%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLG-----KWEEQLLSSEKID-KL---PACGFGFVC 58
           + A      G+ ++ ++ G K+P+        +W       E I+ +       G G VC
Sbjct: 6   DAALDYASRGWPVLAIKAGTKQPRDAAVNGGPRW-NATTDLETINNRWGIADPPGIGIVC 64

Query: 59  GVGEQPLYAFDIDSKDEKTAN--TFKDTFEILHGTPIVRI---GQKPKILIPFRMNKEGI 113
           G+    L   DID+ D   A+  T     E  HGT    +    Q     + FR   +G 
Sbjct: 65  GIDS-GLLVIDIDTDDGHGADGPTSLAALEAKHGTLPATVEAKTQSGGRHLYFRYL-DGP 122

Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
           +           +D  G G + VA      T  +Y W   P+  ++ D P      ++ +
Sbjct: 123 QIGNGAGVIGPGIDHRGEGGFVVAPPSQ-GTYGDYLWVRSPNDHEIADCP---GWLIDKM 178

Query: 174 FKF 176
           FK 
Sbjct: 179 FKK 181


>gi|298530805|ref|ZP_07018207.1| Bifunctional DNA primase/polymerase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510179|gb|EFI34083.1| Bifunctional DNA primase/polymerase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 500

 Score = 89.9 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 55/196 (28%), Gaps = 15/196 (7%)

Query: 13  AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAF 68
               GF + P R  +K+P      ++       I K     P    G   G     ++A 
Sbjct: 24  YAETGFPVFPCR--NKKPITDHGHKDATTDEAIIRKWWTRNPDAQIGTPTGPAS-GVWAL 80

Query: 69  DIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
           D D  D    +T +   +     P  R  Q       F  +  G + + +T      +D+
Sbjct: 81  DEDLPDGP--DTLEQLIDTYGPLPPTRTQQTGSGGKQFLFSWNGCQVRNSTSKIGPDIDV 138

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
            G G Y +       +   Y W                +   E      +  T     + 
Sbjct: 139 RGDGGYIILPPSGHPSGGVYQWINELSP------AAAPDWLSELALNPRRPKTALQDTNA 192

Query: 189 KSIIPSKTWTNNNNRQ 204
            +   +        R+
Sbjct: 193 ATFQGTAYGRAALERE 208


>gi|182436697|ref|YP_001824416.1| hypothetical protein SGR_2904 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178465213|dbj|BAG19733.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 294

 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 63/261 (24%), Gaps = 34/261 (13%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSSEKIDK--LPAC 52
           A  A   G+ + PLR  DKRP   G               KWE++  +     +    A 
Sbjct: 8   ALDAAERGWHVFPLRPADKRPALHGETACSGTGDCAGGHRKWEQRATTDPDRIRAAWSAG 67

Query: 53  --GFGFVCGVGEQPLYAFDIDSKDEKT------ANTFKDTFEILHGTPI---VRIGQKPK 101
               G   G     L   D+D    K         T         G  +    R      
Sbjct: 68  AFNVGLATGP--SGLVVVDLDPVKAKDPKGTPDGVTSLQALCERAGQTVPATYRTRTASG 125

Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
               +     G++   +      H+D    G Y VA          Y    P     + +
Sbjct: 126 GHHLYFTAPPGVRLGNSAGRLGKHIDTRAHGGYVVAAGSTLPNG-AYEVVNPTDPVPLPE 184

Query: 162 --TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
               LL+                       ++               N  +       G 
Sbjct: 185 WLYALLAPRQPSRGLMAVPVPVRASRYAAAALRAETAAVAGAGEGVRNWTLVRAARALGR 244

Query: 220 EFYNGSHDEWIPVVMAVHHET 240
              +G  D    V  A++   
Sbjct: 245 FIPSGDLD-RSEVEAALNSAG 264


>gi|75675821|ref|YP_318242.1| ATPase [Nitrobacter winogradskyi Nb-255]
 gi|74420691|gb|ABA04890.1| RecA-family ATPase [Nitrobacter winogradskyi Nb-255]
          Length = 666

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 96/307 (31%), Gaps = 54/307 (17%)

Query: 11  KQAIHNGFKLIPLRLGDKR-----PQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVG 61
           +    NG  L+P+  G K            W       E+IDK     P C FG V    
Sbjct: 16  QYYKSNGAALVPIPAGSKIATGIISSFKHDWSRNP---EQIDKWARENPGCNFGVV--AF 70

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIV------RIGQKPKILIPFRMNKEGIK- 114
              L   DID+K +         +  L  +  +       +         +    +G+  
Sbjct: 71  ASNLIIVDIDTKGDNGREEAWALWAELCASWGLPAALVPHVQSPSGGWHVYCTVPDGVDA 130

Query: 115 -KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
              +  ++ +G ++I   G Y VA   +    + Y                      E L
Sbjct: 131 ATLRQPDAIKGRINIRCIG-YTVAAGSYYD-GRPYQLMPGAPPP---------HPAPEGL 179

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
            +     T  + + +               +++ R++ + L+   E     S+++WI + 
Sbjct: 180 IQHCSGGTRKVTEHRSRQG-----------EHSLRDVRSMLAWMNERDAFDSYEDWISIG 228

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293
            A+         G E+          Y   + + KW+TF   + G+      T  + F  
Sbjct: 229 QALKICFWDD--GLELW-ESVTVAGRY---SCDQKWETFKDTDDGNAV----TLATWFQR 278

Query: 294 HGKLIPK 300
             K   +
Sbjct: 279 ARKAGWQ 285


>gi|168703469|ref|ZP_02735746.1| hypothetical membrane protein [Gemmata obscuriglobus UQM 2246]
          Length = 901

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 75/308 (24%), Gaps = 52/308 (16%)

Query: 10  AKQAIHNGFKLIPLRL-----------------------GDKRPQRLGKWEEQLLSSEK- 45
           A      G++++PL                           K P+     +E      + 
Sbjct: 12  ALDYAGRGWRVVPLHACVADERRTDGAIGCSCGNPECGSQGKHPRLKAWQKEASADPAQV 71

Query: 46  ---IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI--GQKP 100
                  P    G   G  E  + A D+D+K  +         + L G  + R    +  
Sbjct: 72  GTWWAAWPEANVGVALG-PESGVVAIDVDTKAGE------QLVKELAGDAVERTVLFRTG 124

Query: 101 KIL-IPFRMNKEGIKKKKTTESTQGHLD---ILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156
           K   + + +  +      T     G  +       G   V       +   Y W      
Sbjct: 125 KGHRLLYAVPADLPAPPVTRVVQLGGSEAVRFQSTGGQCVMPPSLHPSGSFYEWVEGRDL 184

Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216
                 P + +  +  + +          +  +         N +   Y +    A  + 
Sbjct: 185 AACPVAP-MPDWLIAEMCRPNSP--EWTDQGAREAFLEGKDFNRDADWYRDVLEPAGFTP 241

Query: 217 FGE-----EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
            G+      F        I V +  +    GS         +S      D      K+  
Sbjct: 242 AGQANGVMRFTRPGKRAGISVTVGHYRARDGSPALY----VFSGSIPGLDAGRCYDKFGA 297

Query: 272 FDFEEIGD 279
           F     G 
Sbjct: 298 FAKLHHGG 305


>gi|42543570|pdb|1RNI|A Chain A, Bifunctional Dna PrimasePOLYMERASE DOMAIN OF ORF904 FROM
           The Archaeal Plasmid Prn1
          Length = 216

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 26/207 (12%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----CGFGFVCGV 60
             AK  + +GF +IP+    K+P  +   K+  ++ S E+  +          +    G 
Sbjct: 6   RYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ 65

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--------FRMNKEG 112
             + L   D +SK++  A   +   E L    +        I I          ++N   
Sbjct: 66  --KGLVILDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 123

Query: 113 IKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLLSE 167
            +  K     Q +   +LG G      +      P  ++ YT     +     +   +S+
Sbjct: 124 EENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLY----NELKEISK 179

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPS 194
            D++ L +F  E    L          
Sbjct: 180 VDLKSLLRFLAEKGKRLGITLSKTAKE 206


>gi|226306821|ref|YP_002766781.1| hypothetical protein RER_33340 [Rhodococcus erythropolis PR4]
 gi|226185938|dbj|BAH34042.1| hypothetical protein RER_33340 [Rhodococcus erythropolis PR4]
          Length = 290

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 26/194 (13%)

Query: 2   PVMQWKEQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGF 56
           P   + + A     +G+ + PL   DK P        +      +I+K          G 
Sbjct: 18  PAGPFAQHAPALAADGWSVFPLVPRDKVPFAGSHGHRDATTDRTQIEKWTRTHADGNIGL 77

Query: 57  VCGVGEQPLYAFDIDSKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
                +  +   DID     +A        E     P  R+ +  +    +  +      
Sbjct: 78  R---PDVGMLVVDID-----SAALLAPWMNERGLSLPPTRVVRTNRGSHYYYAHSSERPL 129

Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT-WTTPPHRFKVEDTPLLSEEDVEYLF 174
                     +D+     + +A     K+ + Y  W   P          L  E ++++ 
Sbjct: 130 LAAI----PGVDLKTEKGFVLAPGSIHKSGRIYRVWRDLP-------IAELPAEWLKHIQ 178

Query: 175 KFFQEITVPLVKDK 188
           +   +   P+V   
Sbjct: 179 RPEPKPRPPVVTRS 192


>gi|282890933|ref|ZP_06299447.1| hypothetical protein pah_c032o007 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499148|gb|EFB41453.1| hypothetical protein pah_c032o007 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 159

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 417 ITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
           +     D  +R +   +G L L+ G        K  Y T      +     +  F   + 
Sbjct: 32  MAKHQFDIDTRAINCLNGELHLKEGTWHLQPHDKHNYRTTQIPIAYDPQATAPRFEQFLE 91

Query: 475 GYF-ESEEVMD---YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
             F   E+  +        +G +LL   + ++F+ + G G +GKS L+++++Y  G  +V
Sbjct: 92  EIFQGDEDTEERKITVCELLGYSLLTSCEFEKFVILLGNGSNGKSVLLHVVEYLVGTSHV 151

Query: 531 INAEAS 536
              +  
Sbjct: 152 SAVQPL 157


>gi|302343152|ref|YP_003807681.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM
           2075]
 gi|301639765|gb|ADK85087.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM
           2075]
          Length = 624

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 71/231 (30%), Gaps = 19/231 (8%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQ 63
           E A++    G+  IP+   DKRP R   +++ +   + ++      P    G V G    
Sbjct: 3   EAAQRYASLGWAAIPV-GADKRPLRPWAEYQTRRPEAGELADWFGKPGAMVGVVTGKVSN 61

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
            L   D D+ +    +  +         PI      P+    +  ++EG+K         
Sbjct: 62  -LLVVDADNSEAI--SRAEALLPDGLELPIATT---PRGRHYYFAHREGMKNAVGVM--- 112

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
             +D+   G Y VA    P   +   W   P      + P   E+ V    K      V 
Sbjct: 113 PAVDVRAEGGYVVAP---PGPGR--EWLVAPWDCAPPELPAQLEDVVRARAKERMLAGVK 167

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
           +          +   +   R     E+T              +D    V  
Sbjct: 168 VDPGANLPQGERAPCSRYGRHALADELTKIALAGQGGRNRQINDSSFAVGQ 218


>gi|298508556|pdb|3M1M|A Chain A, Crystal Structure Of The Primase-Polymerase From
           Sulfolobus Islandicus
          Length = 335

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 80/251 (31%), Gaps = 28/251 (11%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----CGFGFVCGV 60
             AK  + +GF +IP+    K+P  +   K+  ++ S E+  +          +    G 
Sbjct: 10  RYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ 69

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--------FRMNKEG 112
             + L   D +SK++  A   +   E L    +        I I          ++N   
Sbjct: 70  --KGLVILDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 127

Query: 113 IKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLLSE 167
            +  K     Q +   +LG G      +      P  ++ YT     +     +   +S+
Sbjct: 128 EENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLY----NELKEISK 183

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
            D++ L +F  E    L         +K W      +         L     +  +G   
Sbjct: 184 VDLKSLLRFLAEKGKRLGI--TLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKPV 241

Query: 228 EWIPVVMAVHH 238
           E I   +    
Sbjct: 242 EKIKEEICTKS 252


>gi|83311028|ref|YP_421292.1| hypothetical protein amb1929 [Magnetospirillum magneticum AMB-1]
 gi|82945869|dbj|BAE50733.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 469

 Score = 89.2 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 72/285 (25%), Gaps = 41/285 (14%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-IDKL---------PACGFGFV 57
           + A      GFK+ PL+   K P     W ++  +    I                 G  
Sbjct: 9   DHALALAAKGFKVFPLQPNGKLP-IWEGWPDRATTDAATIRGWWSDPLTGGSKPYNVGVC 67

Query: 58  CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP--IVRIGQKPKILIPFRMN----KE 111
                  L   D D+K  K      +  + + GTP   V I         F++      E
Sbjct: 68  T----SGLLVTDPDAKGGKPGLVNWEINDAIFGTPDHPVTITPTGGQHHFFKLPAGINPE 123

Query: 112 GIKKKKTTESTQG----HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
            +     +   +      +D      + V           Y W        V D P   +
Sbjct: 124 TVGNIADSAKRESPLGKGIDARSWHGFVVGAGSVID-GVPYRW--QAEAASVADLPDAPD 180

Query: 168 EDVEYLFKFF--QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
             ++   +    +  T    +      P+         Q+   E           F    
Sbjct: 181 WIIDKCKRQVVERPDTAETPEGLTLDTPAALHRATWYLQHEAPEAVEGDGGDSTAFSVAC 240

Query: 226 H--DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           H  D  +   MA+           +      +    +  E+   K
Sbjct: 241 HVRDYGVSREMAL-------ELLLDHWND--RCCPPWSPEDLELK 276


>gi|315503922|ref|YP_004082809.1| bifunctional DNA primase/polymerase [Micromonospora sp. L5]
 gi|315410541|gb|ADU08658.1| Bifunctional DNA primase/polymerase [Micromonospora sp. L5]
          Length = 299

 Score = 88.8 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 52/178 (29%), Gaps = 36/178 (20%)

Query: 15  HNGFKLIPLRLGDKRPQRLG------------------KWEEQLLSS-EKIDK-LPA--C 52
             G+++ PLR  DKRP                       WE +  +  ++I +   A   
Sbjct: 13  ARGWRVFPLRPDDKRPAFPDHAADDCTGRDPRCRAGHVGWEARATTDPDRIRRAWSARPY 72

Query: 53  GFGFVCGVGEQPLYAFDIDSKDEKTA----------NTFKDTFEILHGTPIVRIGQKPKI 102
           G G  CG     L   D+D+     A                   +  T  V  G+    
Sbjct: 73  GIGLACGP--SRLVVVDLDTPKTGGAGGRDGLTVLAELAAAHAATIDPTYTVTTGR-GGT 129

Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
            + +R    G   + T  +    +D    G Y VA        + YT         + 
Sbjct: 130 HLYYRHPDTGPALRNTAGTLGPMVDTRAHGGYVVAPGSTVA-GRPYTVDLDTDLAPLP 186


>gi|259507777|ref|ZP_05750677.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164570|gb|EEW49124.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 289

 Score = 88.8 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 71/254 (27%), Gaps = 30/254 (11%)

Query: 1   MPVMQW-KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFG 55
           +P  QW    A++    GFK+ PL    K P     +++      +     +K P    G
Sbjct: 41  LPTNQWLPTAARRYAQLGFKVGPLN--GKVPLTPNGFKDFTTDLAQVQAWWEKWPGANIG 98

Query: 56  FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
                  + +   DID ++    +T+ +   +     ++ +     +   F +       
Sbjct: 99  ---ATPPKGMVVLDIDPRNG-GWDTWVELGGLEVPDTLMMLTGSHGLHYWFTLP--YSGD 152

Query: 116 KKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEY---TWTTPPHRFKVEDTPLLSEEDVE 171
            + T      +D+     Y V     HP T   Y    W TP          +L      
Sbjct: 153 VRGTAG--EGVDVKTHTGYVVVPPSVHPTTGMHYLIAHWCTPV---------VLPTWLRA 201

Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
           +++K   +      +  +              Q    +    L            D    
Sbjct: 202 HVYKPLPK--PVQARRVQLGESPGAGLVATVEQAGEGQRNNVLHWAACRALEDGLDLTAE 259

Query: 232 VVMAVHHETRGSSK 245
           +  A         +
Sbjct: 260 LTTAAQSIGLSDME 273


>gi|25028716|ref|NP_738770.1| hypothetical protein CE2160 [Corynebacterium efficiens YS-314]
 gi|23494002|dbj|BAC18970.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 293

 Score = 88.8 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 71/254 (27%), Gaps = 30/254 (11%)

Query: 1   MPVMQW-KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFG 55
           +P  QW    A++    GFK+ PL    K P     +++      +     +K P    G
Sbjct: 45  LPTNQWLPTAARRYAQLGFKVGPLN--GKVPLTPNGFKDFTTDLAQVQAWWEKWPGANIG 102

Query: 56  FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
                  + +   DID ++    +T+ +   +     ++ +     +   F +       
Sbjct: 103 ---ATPPKGMVVLDIDPRNG-GWDTWVELGGLEVPDTLMMLTGSHGLHYWFTLP--YSGD 156

Query: 116 KKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEY---TWTTPPHRFKVEDTPLLSEEDVE 171
            + T      +D+     Y V     HP T   Y    W TP          +L      
Sbjct: 157 VRGTAG--EGVDVKTHTGYVVVPPSVHPTTGMHYLIAHWCTPV---------VLPTWLRA 205

Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
           +++K   +      +  +              Q    +    L            D    
Sbjct: 206 HVYKPLPK--PVQARRVQLGESPGAGLVATVEQAGEGQRNNVLHWAACRALEDGLDLTAE 263

Query: 232 VVMAVHHETRGSSK 245
           +  A         +
Sbjct: 264 LTTAAQSIGLSDME 277


>gi|307592387|ref|YP_003899978.1| primase 2 [Cyanothece sp. PCC 7822]
 gi|306986032|gb|ADN17912.1| Primase 2 [Cyanothece sp. PCC 7822]
          Length = 1087

 Score = 88.8 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 51/202 (25%), Gaps = 33/202 (16%)

Query: 11  KQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSE-----------------KIDKLPACG 53
           +Q I +G  L  + +G  +      W+ +   +                  +I KL   G
Sbjct: 16  QQIIASGIDLPLVPIGTHKQPLGDNWQNRPYKAAQLIEALQNGGVEVPIKGEIKKLQLGG 75

Query: 54  FGFVCGVG------EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR 107
           FG + G+          L A D D +            + +  T     G+  +    F 
Sbjct: 76  FGVITGLPVTVEGISYYLMALDQDGESAIAIIDQLGNGKGVPPTVAFTSGRPGRCQYLFL 135

Query: 108 MNKEGIKKKKTTE---------STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158
           +        +T +              L+        V           Y W       +
Sbjct: 136 VPSFYKDLIRTKKLKTAQTGDDDKPEQLEFRFANMQSVLPPSIHPVTGVYHWIEGAALGE 195

Query: 159 VEDTPLLSEEDVEYLFKFFQEI 180
           V    +     +  +      +
Sbjct: 196 VP-IAIAPPWVISQMLINMSRL 216



 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 127/443 (28%), Gaps = 64/443 (14%)

Query: 100 PKILIPFRMNKEGIK-KKKTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRF 157
            K  IP +++  G K      E     +D+L   G+Y   Y    +  K Y    P H  
Sbjct: 225 HKYDIPLKVDSTGTKIDGSIIERLHKKVDLLSVIGEYIPLY----ERGKNYVGHCPVHES 280

Query: 158 KVEDTPLLSEEDV-------------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQ 204
           K  +  +  ++ +              +L    +      +  + +     T  N ++  
Sbjct: 281 KAPNLMVYPDKKMFTCHDCGIGGNIFNFLQLLGKSQLKETITPQSTPQKRLTNNNGHHNF 340

Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN 264
           ++N +           F    +D+W+ V MA+H          +    WS+  S Y    
Sbjct: 341 WSNVDWALSYLNALSPFRADDYDDWLTVGMALHSVDDS---LLKEWDNWSRSSSKYKPGE 397

Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF 324
              KW +F             +  +L +       +    +            +Y  G  
Sbjct: 398 CEKKWKSFSSGGGV-------SLGTLAHLAKSDGWRSPFENN---------HRVYSNGSK 441

Query: 325 LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN--SKS 382
                +      D++ V     TL ++   I+            L E  +  +    S+ 
Sbjct: 442 NIAPSSSERNFVDEHTVNQGEPTLAQLIEEILAQNFDDATQDLALVELAKSYDNYNPSEI 501

Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
                     R   +  S+ K+  + LE    F            +L   D   D     
Sbjct: 502 RAIANKLIDARHEQDYLSERKAELEQLEEHESFE-----------YLPFDDIFYDC---- 546

Query: 443 KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR 502
                 ++           +    Q FL ++        V+      +   L G  K   
Sbjct: 547 -----PDVASAFKYACQVNKKIQPQYFLGILPVTAG---VIGVKGEVMAPVL-GKVKGTL 597

Query: 503 FIHIRGVGGSGKSTLMNLIKYAF 525
            + I G  G GKS +  ++    
Sbjct: 598 NLAIVGESGEGKSIVSKILISPL 620


>gi|15897097|ref|NP_341702.1| primase (amino-end fragment) [Sulfolobus solfataricus P2]
 gi|13813274|gb|AAK40492.1| Primase (Amino-end Fragment) [Sulfolobus solfataricus P2]
          Length = 405

 Score = 88.4 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 30/251 (11%)

Query: 1   MPVMQWKEQAKQAIHN-GFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----C 52
           M  ++W   AK  I   GF +IP+    K+P      ++  + L+ E+ +K P       
Sbjct: 1   MDKIEW---AKWFIDTLGFAVIPIDRDTKKPTIPNWQQYSTRALTDEEKEKFPKMIEEGY 57

Query: 53  GFGFVCGVGEQP--LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK 110
            +G    + ++   L   D + K+   A   +     L    +  +      L  + + +
Sbjct: 58  NYGIPGQMLDKNRALVILDFEDKELLKAWIGESELNKLCQNTLC-VTTPHNGLHIYAITE 116

Query: 111 EGIKKKKTT---ESTQGHLDILGCGQYFVAYNI---H--------PKTKKEYTWTTPPHR 156
           E  + K         +  +D+     Y VA      H        P   ++Y        
Sbjct: 117 EFPEYKFNPAFLRENKNVMDLQSLKSYVVAPGSCINHKFCDSAKCPWKGQDYVTCYYADI 176

Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216
               +   ++E  ++   K+  E    L     S +      N  +    + E       
Sbjct: 177 TP--ERAKINEIHLKGFLKYLVEKGKKLGITPASGLLEWLGGNKKSDTEEDFEKLKEEMR 234

Query: 217 FGEEFYNGSHD 227
             + +   + D
Sbjct: 235 KYDRYRGKTLD 245


>gi|282929010|ref|ZP_06336596.1| hypothetical protein SAPG_02823 [Staphylococcus aureus A9765]
 gi|282591865|gb|EFB96907.1| hypothetical protein SAPG_02823 [Staphylococcus aureus A9765]
          Length = 531

 Score = 88.0 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/521 (11%), Positives = 150/521 (28%), Gaps = 75/521 (14%)

Query: 27  DKRPQRLGKWEEQLLSSEKIDKLPA-----------CGFGFVCGVGEQPLYAFDIDSKDE 75
            K P     ++    +S+      A            G GFV           DID+  +
Sbjct: 42  SKIPYSYAGYKASSTNSDTWTIFDAINSIYEQNDRYDGIGFVI-SEHDNYIVLDIDNAID 100

Query: 76  KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135
           +++    +    +              L  F   +   ++KK        +++    ++ 
Sbjct: 101 ESSQITSNLALDMTKMTYCEKSPSGTGLHCFFKGELPKERKKKRSDL--DIELYDNARFM 158

Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195
                     +            + +     EE  E                 KS +  +
Sbjct: 159 TMTGESI--GQREISDDQSLLNNLVERYFKQEELPETFIGNN--------ITNKSNLDDE 208

Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH----HETRGSSKGKEIAR 251
              N   +     +I+  L    E +++   +    V   +H    + ++   + + I  
Sbjct: 209 DVINIMLKSKQKDKISNLLQGNYEPYFDSPSE---AVQSLLHYLAFYTSKDKEQMERIFL 265

Query: 252 RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311
            ++     +  +  N  W   + ++  +   +      ++   GK  P  L         
Sbjct: 266 NYNNLTDKWGSKRGNTTWGQLELDKAINNQSE------VYVKPGKENPPKL--------- 310

Query: 312 NKAMFSIYKKGHFLYTADTKAWYKK---DKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
                               +W+     D N    ++ T+          +V   +   D
Sbjct: 311 ----------------IKKGSWWFYPNDDTNRKPKFNHTIMAKFICQEYHIVRYPDADSD 354

Query: 369 --LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
             +        +  K+ R          N+++NS  +     ++   + S+ ++      
Sbjct: 355 IYIYNTQTGIYELDKTGRKLRKIIRSLDNLKDNSVKEVRNYIVDMCDVRSVVNNE----- 409

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDY 485
            ++  ++G++   T      T ++++     T +      +     +     + E  +  
Sbjct: 410 -YVAVKNGLVHYHTKIFRTFTPDIFVIDKLPTAYNPNAYDEFVDTTIQKVSCNHETTIMN 468

Query: 486 FTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAF 525
                   L       + I++ G    +GKST+ ++IK  F
Sbjct: 469 IYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATF 509


>gi|312891663|ref|ZP_07751173.1| Bifunctional DNA primase/polymerase [Mucilaginibacter paludis DSM
           18603]
 gi|311295847|gb|EFQ73006.1| Bifunctional DNA primase/polymerase [Mucilaginibacter paludis DSM
           18603]
          Length = 827

 Score = 88.0 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 103/813 (12%), Positives = 233/813 (28%), Gaps = 136/813 (16%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEK----IDKLPACGFGFVCGVGEQP 64
           A   + +G  LIP++  DK P  +   ++ ++ +  +    I+         +CG     
Sbjct: 8   ALSYLKDGISLIPVKEVDKTPFFKWKDFQSKIATEGELWTSIEFYGTSSLAIICGKVSGN 67

Query: 65  LYAFDIDSK-----DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK--------- 110
           +   D+D K     D    N  ++ +  L     +         I +R+           
Sbjct: 68  IEVIDVDVKYKPGIDAILMNDIRNFYPDLFSRLRIHKTPSGGFHIIYRVGGHEVPGNLKL 127

Query: 111 ------------EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158
                       +  K  K        L+  G G Y +                     K
Sbjct: 128 AGRPTLEAEIELQKAKGVKRPNKEVNFLETRGEGGYIL-----------SDLCNGYTLHK 176

Query: 159 VEDTPLLSEED---VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL- 214
               P+++ E+   +  L + + EI     K K +      +  N    Y N      L 
Sbjct: 177 DNPIPVITWEERCSLITLCQTYNEIIKEAPKPKPNKSQESIYDENPFEHYNNTVNPTELL 236

Query: 215 -------SCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
                  S     +   +  +    V A  ++++        +    ++   Y+      
Sbjct: 237 SGFGWKFSHENPHYIWYTRPDKDKGVSASWNKSKRIFYIFTSSTEL-QESRGYNPATVLS 295

Query: 268 KWD---------TFDFEEIGDTAKKRSTFTSLFYHH--GKLIPKGLLASRFS--DAYNKA 314
           +            F  +      KK+     +      G  IP           +    +
Sbjct: 296 ELKFDGDKSKTYYFLTQNGFGKVKKQVEQGLVKKAALSGSGIPANFSPDAKKTFEDLKIS 355

Query: 315 MFSIYKKGHFLYTADTKAW-------YKKDKN---NVYIWSLTLDKITASIMNFLVSMKE 364
           +   +  G F    +   +       Y+         Y   +   K    I      +  
Sbjct: 356 LHDDHPHGIFWEQDENDRFRIDRLGLYEVANKLGFATYRGDIVRIK-DRLIYKVTPRLFY 414

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD---L 421
           D      + ED N        +     R           S    ++  +I   T D    
Sbjct: 415 DTLRDYIKEEDGNLYKDICNAYEAFIQR-----SGDFTISRINQIDENNILKDTYDTCYK 469

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
           L  ++      DG  ++   + ++      I +             ++L+ +       +
Sbjct: 470 LYINTAVKITADGYKEVPYSEIIEHIWHDKIMQR-KWDMSIVPSEFKYLEFLHYAIGIND 528

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRG----------VGGSGKSTLMNLIKYAFGNQYVI 531
            +    + +G  L   NK +   +I             GGSGK+   N+++         
Sbjct: 529 QVK---KVIGY-LSHDNKDENTGYIITLVEKCPDPKMGGGSGKNIFGNILRN-------- 576

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
               + +      +   +   L    G R+  +++  +  + + + +K+M+ G  +  + 
Sbjct: 577 ---TTTVCTVAGSQVKFSEKLLQSWNGERVFFMADVPK--KFDFSYLKEMSTGYGL-VKK 630

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA---NRDASFAQKL- 647
            + +  S       P ++ N +    + D    RR I + F          D  F     
Sbjct: 631 LWKDDRS-VGPDEMPKLLVNTNFSFDDSDGGLKRRIIPLEFTDFFTRCGGVDVHFNCMFP 689

Query: 648 ---------ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA--- 695
                      K  +    +  + V+ Y++    +   E+     E++ +    +     
Sbjct: 690 TSNNSNSGWTEKDWMGFDCFIAECVQQYLAANCKITPTELSHGGWEKQFKQQ--FGQHTF 747

Query: 696 -WIDDCCDI-GENLWEESHSLAKSYSEYREQEL 726
            +I++  +    +++  +      Y  +RE+  
Sbjct: 748 EFINENFERWTNSVFISTKEFNNEYKAFREENN 780


>gi|284174333|ref|ZP_06388302.1| primase (amino-end fragment) [Sulfolobus solfataricus 98/2]
          Length = 382

 Score = 88.0 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 30/251 (11%)

Query: 1   MPVMQWKEQAKQAIHN-GFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----C 52
           M  ++W   AK  I   GF +IP+    K+P      ++  + L+ E+ +K P       
Sbjct: 1   MDKIEW---AKWFIDTLGFAVIPIDRDTKKPTIPNWQQYSTRALTDEEKEKFPKMIEEGY 57

Query: 53  GFGFVCGVGEQP--LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK 110
            +G    + ++   L   D + K+   A   +     L    +  +      L  + + +
Sbjct: 58  NYGIPGQMLDKNRALVILDFEDKELLKAWIGESELNKLCQNTLC-VTTPHNGLHIYAITE 116

Query: 111 EGIKKKKTT---ESTQGHLDILGCGQYFVAYNI---H--------PKTKKEYTWTTPPHR 156
           E  + K         +  +D+     Y VA      H        P   ++Y        
Sbjct: 117 EFPEYKFNPAFLRENKNVMDLQSLKSYVVAPGSCINHKFCDSAKCPWKGQDYVTCYYADI 176

Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216
               +   ++E  ++   K+  E    L     S +      N  +    + E       
Sbjct: 177 TP--ERAKINEIHLKGFLKYLVEKGKKLGITPASGLLEWLGGNKKSDTEEDFEKLKEEMR 234

Query: 217 FGEEFYNGSHD 227
             + +   + D
Sbjct: 235 KYDRYRGKTLD 245


>gi|13242580|ref|NP_077594.1| EsV-1-109 [Ectocarpus siliculosus virus 1]
 gi|13177383|gb|AAK14527.1|AF204951_109 EsV-1-109 [Ectocarpus siliculosus virus 1]
          Length = 606

 Score = 87.6 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/392 (11%), Positives = 118/392 (30%), Gaps = 49/392 (12%)

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF--SITSDLLD 423
           +        +     K    +         + ++       +           +    L+
Sbjct: 173 IGSFPTHAWEELCEIKGIVRFLCDKETHCEMWKHCNMGGNYEQCVKYLANCCDLEFPDLN 232

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKE-LYITKSTGTPFVEG-----------EPSQEFLD 471
           +  R     DGI D          +E      S    + +                 F  
Sbjct: 233 AKRRVWSFNDGIYDATEDTFTTYDQEIDEHLVSCKIIYKDFYDVYFSTPSRAADKLNFSQ 292

Query: 472 L----VSGYFE----SEEVMDYFTRCVG---MALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
           L        F+     ++++ +    VG     +   +  Q    ++GV G+GKST++ +
Sbjct: 293 LKTPLFDSIFQPQRWDQDMLWWMYVFVGRLFYEVSELDSWQVIPFMKGVAGTGKSTVIKV 352

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           I+    N+  +   +++I +            L  +    I ++ E   +  ++ A  + 
Sbjct: 353 IQ-MMYNRADVGVISNNIEKKFG---------LSTIYNKTIFVVPELKGDFAMDQADFQS 402

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR- 639
           M  G+ ++  +  G+  +    +    +  N+     +   +  RR +V PF   +    
Sbjct: 403 MVTGETLSMPVKNGSPITGV-WTTPGIMAGNESAKWEDKSGSISRRIVVFPFSHKVPEDK 461

Query: 640 -DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV-------DIPEVCLKAKEEERQGTD 691
            +     +++        +   K   AY               +P    + K++ +  T+
Sbjct: 462 VNPGLMDEIQDTELPAIIR---KSALAYRDAVQRFGNGDIWQALPSRIREQKKKLQYSTN 518

Query: 692 TYQAWID-DCCDIGENLWEESHSLAKSYSEYR 722
              A+I+ D   + +  +            + 
Sbjct: 519 PLFAFINSDNVSLSDEEYTLESIFVTKLKSFA 550


>gi|331648291|ref|ZP_08349380.1| virulence-associated E family protein [Escherichia coli M605]
 gi|331042840|gb|EGI14981.1| virulence-associated E family protein [Escherichia coli M605]
          Length = 728

 Score = 87.6 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 82/624 (13%), Positives = 152/624 (24%), Gaps = 118/624 (18%)

Query: 33  LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89
           + +W   +++     +    P  G     G       A D DS+DE      + T   L 
Sbjct: 63  IAQWTSHVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119

Query: 90  G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
           G   P        K L    ++ +  K+        G +++L  GQ FVA   H  +   
Sbjct: 120 GELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178

Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
             W         ++ P ++ E +E L++   E     V  +      +  +        +
Sbjct: 179 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGSTKMRDRSTFTPGATDD 234

Query: 208 -REITAFLSCFGEEFYNGSHDEW--IPVVMAVHH------ETRGSSKGKE--IARRWSKQ 256
             E          +  NG            +            G + G E    +     
Sbjct: 235 TAEYLDANGWTLLDGANGERYIRCPFEDGHSTGGDPTSTVYFPGGTAGFEQGHFKCLHAS 294

Query: 257 GSTYDEENFNYKW----DTFD--FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS--RFS 308
            +  D+ +F        D F+               F    +   +        +  R  
Sbjct: 295 CAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLPLPAFERDKWGRIEATISNAAKAVVRPD 354

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
                  F  ++       A +  W                +IT     F    +E + D
Sbjct: 355 FVDIDIRFDQFRDEIMFAQAGSGQWQAFTD-----ADYARLRITMEKRGFKPVGRELIRD 409

Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
           +     D                               +     +I  +     D   R 
Sbjct: 410 VVLLAAD-------------------------------EQPFDSAITWLNGLEWDGVPRI 438

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTR 488
                                     +  TP+        +                   
Sbjct: 439 ECF-----------------YHTHFGTADTPYTRAVSMYMWT-----------------A 464

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
             G  L  G KA     + G  G GKS+ +  +          + + +   +    E   
Sbjct: 465 LAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFAEKDD 514

Query: 549 ANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
               L R + G  +  I E    +      IK             Y    ++ P      
Sbjct: 515 ---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLVFV 571

Query: 608 IVPNKHLFVRNPDDAWWRRYIVIP 631
              N+  F+ +      RR++ + 
Sbjct: 572 GTTNEDEFLADKTG--NRRWLPVE 593


>gi|23014441|ref|ZP_00054257.1| hypothetical protein Magn03008885 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 286

 Score = 87.6 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 71/286 (24%), Gaps = 38/286 (13%)

Query: 9   QAKQAIHNGFKLIPL-----RLGD--------------KRPQR---LGKWEEQLLSSEKI 46
            A   +  G  ++PL     R G               K P         ++     E +
Sbjct: 7   HAHLYLSLGLAVLPLHFPFEREGSLQCSCGKATCRQPAKHPFGQLAKNGLKDSSRDPETV 66

Query: 47  DKLPAC---GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI-GQKPKI 102
            +         G   G     + A D+D + +          E     P  R        
Sbjct: 67  QRWFDGRSLNIGIATGTIS-GIIALDVDPRHDGDTTLAGLEAEHGPLPPTWRFLTGGGGE 125

Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT 162
            I FR     +            LD+ G G Y VA      +++ Y  +   H   V   
Sbjct: 126 HILFRHPGGTVANSAGL--LGPGLDVRGDGGYIVAPPSRHISRRAYAISVDHHPNDVLLA 183

Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222
           P       E+L +             +     +      + + T     A L+       
Sbjct: 184 P-----PPEWLMQRLSRRKPAAKDAPQERTDWRGHVGATHAEGTRNTALASLTGHLLRNR 238

Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
                  +  +M   +    +    +     S    +   +  + +
Sbjct: 239 VDPFA--VLDLMLCWNRAHCNPPLDD--DEVSATVRSIARKEIDRR 280


>gi|213692010|ref|YP_002322596.1| pancreatic ribonuclease [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|213523471|gb|ACJ52218.1| pancreatic ribonuclease [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320458120|dbj|BAJ68741.1| hypothetical phage protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 760

 Score = 87.6 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 100/340 (29%), Gaps = 50/340 (14%)

Query: 17  GF-KLIPLRLGDKRPQRLG--KWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFD 69
           G+ ++IPL  G K P   G      + ++ E++       P    G V     + +   D
Sbjct: 18  GWMQVIPLPEGHKTPPPSGFTGRSRKPVTDEQVQVWSQATPNANTGIVI---PEGVLVLD 74

Query: 70  IDSKD-----EKTANTFKDTFEILHGTPIVRIGQ-----KPKILIPFRMNKEGIKKKKTT 119
           ID++         A    +  + L   P            P   + +++ +         
Sbjct: 75  IDAEQGHRVKADGAKGISELSQELGALPATWSSTAHGIDSPARHLFYKVPEGL----AWK 130

Query: 120 ESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE--EDVEYLFKF 176
                 +DIL  G +Y V +     + + Y W TP         P +S+          +
Sbjct: 131 GGAIEGVDILQPGHRYSVVWPSIHPSGEMYCWYTPSGSTT-SQIPHISDLATLPWKWVDY 189

Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS-----HDEWIP 231
            ++      K         T  ++    Y  R   A  +   +   N +     HD  + 
Sbjct: 190 LRKPEHTTPKPA-----FNTLISHETGTYDTRMCKAINTFLNKTLSNPASKGSRHDTTLQ 244

Query: 232 VVMAVHH--------ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
            V A+ +             ++ K              E     +W       +    +K
Sbjct: 245 AVWALVNFAQEGHRGALDAINQLKPRFIAEIAPDRPGKEREAAREWAAI----LSGAMEK 300

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
            +   S      +   + +L   F++     + +   + H
Sbjct: 301 VNGIQSHADPCEQSKIERMLPGEFNELTQNTIANQMGESH 340


>gi|260845231|ref|YP_003223009.1| putative replication protein [Escherichia coli O103:H2 str. 12009]
 gi|257760378|dbj|BAI31875.1| probable replication protein [Escherichia coli O103:H2 str. 12009]
          Length = 728

 Score = 87.6 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 82/629 (13%), Positives = 156/629 (24%), Gaps = 128/629 (20%)

Query: 33  LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89
           + +W   +++     +    P  G     G       A D DS+DE      + T   L 
Sbjct: 63  IAQWTGHVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119

Query: 90  G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
           G   P        K L    ++ +  K+        G +++L  GQ FVA   H  +   
Sbjct: 120 GESPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178

Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
             W         ++ P ++ E +E L++   E     V  +      +  +        +
Sbjct: 179 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDD 234

Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEE--- 263
             E          +  NG    +I       H + G          +    + +++    
Sbjct: 235 TAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGGDPT---STVYFPAGTAGFEQGHFK 289

Query: 264 ----NFNYKWDTFDFEEIGDTAKKRSTFTSL--------------FYHHGKLIPKGLLAS 305
               +  ++ D      IG         TS+               +   +        +
Sbjct: 290 CLHASCAHRDDGDFLNAIGIRNDDFEDLTSIEVAEPLPLPAFERDKWGRIEATISNAAKA 349

Query: 306 --RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
             R         F  ++       A +  W                +IT     F    +
Sbjct: 350 VVRSDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD-----ADYARLRITMEKRGFKPVGR 404

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           E + D+     D                               +     +I  +     D
Sbjct: 405 ELIRDVVLLAAD-------------------------------EQPFDSAITWLNGLEWD 433

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM 483
              R                           +  TP+        +              
Sbjct: 434 GVPRIECF-----------------YHTHFGTADTPYTRAVSMYMWT------------- 463

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
                  G  L  G KA     + G  G GKS+ +  +          + + +   +   
Sbjct: 464 ----ALAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISF 509

Query: 544 PEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
            E       L R + G  +  I E    +      IK             Y    ++ P 
Sbjct: 510 AEKDD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPR 566

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
                   N+  F+ +      RR++ + 
Sbjct: 567 RLVFVGTTNEDEFLADKTG--NRRWLPVE 593


>gi|126347806|emb|CAJ89526.1| putative DNA primase/helicase [Streptomyces ambofaciens ATCC 23877]
          Length = 286

 Score = 87.2 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 62/221 (28%), Gaps = 19/221 (8%)

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
                     L     +               + RQ     +   +      +     I 
Sbjct: 21  RHHAAHPFRLLDVHHVEPRHRRHQADGRRAEAHHRQLALSTTGINAMLTQATSAPGMVIN 80

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
           + LLD+    L   DG++DL TG    P      T           P+  +   ++  F 
Sbjct: 81  AALLDADPYALCTPDGMVDLRTGLVKAPDPPRTSTHGPPPSDPRTMPTPRWERFLADAFG 140

Query: 479 -SEE---VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
              E   ++  F   +G ++ G    Q    +   G  GKS L++++    G+       
Sbjct: 141 EDAEAQHMVSDFQLLLGYSVTGDVGGQVPPLLFDSGTIGKSVLLDVLMRLLGDYADAAP- 199

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
                            S   L G R +  SE    D+   
Sbjct: 200 --------------LGFSWHALHGRRAIFCSEVKHGDKYTE 226


>gi|218555124|ref|YP_002388037.1| hypothetical protein ECIAI1_2654 [Escherichia coli IAI1]
 gi|218361892|emb|CAQ99492.1| conserved hypothetical protein; putative virulence-associated
           protein E [Escherichia coli IAI1]
          Length = 728

 Score = 87.2 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 82/629 (13%), Positives = 156/629 (24%), Gaps = 128/629 (20%)

Query: 33  LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89
           + +W   +++     +    P  G     G       A D DS+DE      + T   L 
Sbjct: 63  IAQWTGHVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119

Query: 90  G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
           G   P        K L    ++ +  K+        G +++L  GQ FVA   H  +   
Sbjct: 120 GELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178

Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
             W         ++ P ++ E +E L++   E     V  +      +  +        +
Sbjct: 179 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDD 234

Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEE--- 263
             E          +  NG    +I       H + G          +    + +++    
Sbjct: 235 TAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGGDPT---STVYFPAGTAGFEQGHFK 289

Query: 264 ----NFNYKWDTFDFEEIGDTAKKRSTFTSL--------------FYHHGKLIPKGLLAS 305
               +  ++ D      IG         TS+               +   +        +
Sbjct: 290 CLHASCAHRDDGDFLNAIGIRNDDFEDLTSIEVAEPLPLPAFERDKWGRIEATISNAAKA 349

Query: 306 --RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
             R         F  ++       A +  W                +IT     F    +
Sbjct: 350 VVRPDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD-----ADYARLRITMEKRGFKPVGR 404

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           E + D+     D                               +     +I  +     D
Sbjct: 405 ELIRDVVLLAAD-------------------------------EQPFDSAITWLNGLEWD 433

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM 483
              R                           +  TP+        +              
Sbjct: 434 GVPRIECF-----------------YHTHFGTADTPYTRAVSMYMWT------------- 463

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
                  G  L  G KA     + G  G GKS+ +  +          + + +   +   
Sbjct: 464 ----ALAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISF 509

Query: 544 PEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
            E       L R + G  +  I E    +      IK             Y    ++ P 
Sbjct: 510 AEKDD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPR 566

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
                   N+  F+ +      RR++ + 
Sbjct: 567 RLVFVGTTNEDEFLADKTG--NRRWLPVE 593


>gi|324014360|gb|EGB83579.1| virulence-associated protein E [Escherichia coli MS 60-1]
          Length = 730

 Score = 87.2 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 84/626 (13%), Positives = 154/626 (24%), Gaps = 122/626 (19%)

Query: 33  LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89
           + +W   +++     +    P  G     G       A D DS+DE      + T   L 
Sbjct: 63  IAQWTGHVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119

Query: 90  G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
           G   P        K L    ++ +  K+        G +++L  GQ FVA   H  +   
Sbjct: 120 GELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178

Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
             W         ++ P ++ E +E L++   E     V  +      +  +        +
Sbjct: 179 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDD 234

Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK----------GKE--IARRWS 254
             E          +  NG    +I       H + G             G E    +   
Sbjct: 235 TAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGGDPTSTVYFPAGTAGFEQGHFKCLH 292

Query: 255 KQGSTYDEENFNYKW----DTFD--FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS--R 306
              +  D+ +F        D F+               F    +   +        +  R
Sbjct: 293 ASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLPLPAFERDKWGRIEATISNAAKAVVR 352

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
                    F  ++       A +  W                +IT     F    +E +
Sbjct: 353 PDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD-----ADYARLRITMEKRGFKPVGRELI 407

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
            D+     D                               +     +I  +     D   
Sbjct: 408 RDVVLLAAD-------------------------------EQPFDSAITWLNGLEWDGVP 436

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486
           R                           +  TP+        +                 
Sbjct: 437 RIECF-----------------YHTHFGTADTPYTRAVSMYMWT---------------- 463

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
               G  L  G KA     + G  G GKS+ +  +          + + +   +    E 
Sbjct: 464 -ALAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFAEK 512

Query: 547 GKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                 L R + G  +  I E    +      IK             Y    ++ P    
Sbjct: 513 DD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLV 569

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIP 631
                N+  F+ +      RR++ + 
Sbjct: 570 FVGTTNEDEFLADKTG--NRRWLPVE 593


>gi|155371013|ref|YP_001426547.1| hypothetical protein ATCV1_Z066R [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124333|gb|ABT16200.1| hypothetical protein ATCV1_Z066R [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 598

 Score = 87.2 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 88/308 (28%), Gaps = 29/308 (9%)

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS-DLLDSS 425
            ++    +                      +     K+ + ++E  +    T   +L  S
Sbjct: 225 RNMHSYRQVYEIKEFVYSRLRKEISFEHWSKGTQNMKNISSAVEYLTNCHDTQLPVLHKS 284

Query: 426 SRFLGEQDGILDLETGQKV-------KPTKELYITKSTGTPFVEGEPSQEFLD---LVSG 475
                  +G+      +           +  +   K     F   +    F      +  
Sbjct: 285 RGTYAFTNGVYIASEDRFHCFETSETPLSDSVVACKFFEMKFDNTQYDDWFDIPTPHLDS 344

Query: 476 YFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                   +EV  +    +G  L   N     Q      G+ G+GKS L+  +   F   
Sbjct: 345 VMNHQQWPKEVQMWLLCLIGRVLYRTNEIDSWQVCPFFVGLAGTGKSLLVLKVIKQFFET 404

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             +   +++I +            +       +V   E   +  I  A+ + +  G+ ++
Sbjct: 405 VDVGILSNNIERKFG---------ISAFYDKMLVCAPEIRNDLAIEQAEFQSIVSGEEIS 455

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648
             + +   + +        +  N+     +   +  RR +V  F +P+   D   ++KL 
Sbjct: 456 VAVKFQKAFLQ-EWDVPIVLAGNEVPGWADAGGSIQRRLVVFEFKQPVKEGDMKLSEKLY 514

Query: 649 TKYTLEAK 656
                   
Sbjct: 515 R-EMPNII 521


>gi|332976117|gb|EGK12985.1| N- superfamily bifunctional DNA primase/polymerase [Desmospora sp.
           8437]
          Length = 798

 Score = 87.2 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 13/225 (5%)

Query: 24  RLGDKRPQRLGKWEEQLLSSEKIDK-LPA---CGFGFVCGVGEQPLYAFDIDSKDEKTAN 79
           +   K P      E        I K          G   G     L+A D+D  + +   
Sbjct: 45  KSNGKHPLLESWAEHATADPAAIQKMWEKNSWANVGVPMGKV-NGLFAIDVDGPEGQ--E 101

Query: 80  TFKDTFEILHGTPIVR--IGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137
           T +   +     P     +     + + +R+ K G++   + +    ++DI G G   VA
Sbjct: 102 TLQKWIQEHGELPATWQVLTGGGGMQLWYRVPK-GMEIPNSVKKIGINVDIRGTGGQSVA 160

Query: 138 YNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF--QEITVPLVKDKKSIIPSK 195
                ++   Y W        ++      E  VE + +    Q+         + I  S 
Sbjct: 161 PGSLHQSGNRYRWAPTRGPEDLK-PSAPPEWLVEKIREVIADQQQAKLSKIQTEEINLSL 219

Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
           +       +   +   +            +        MA+ +  
Sbjct: 220 SPKGKPKFEKLLQLRKSSKKFREILEGEKTFRSPSERDMAMANIA 264


>gi|239834270|ref|ZP_04682598.1| ATPase-like protein [Ochrobactrum intermedium LMG 3301]
 gi|239822333|gb|EEQ93902.1| ATPase-like protein [Ochrobactrum intermedium LMG 3301]
          Length = 727

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 65/243 (26%), Gaps = 38/243 (15%)

Query: 8   EQAKQAIHNGFKLIPLRLGD---------------KRPQRLGKWEEQLLSS----EKIDK 48
           + A       + + P R  D               K P     +    L+     E   +
Sbjct: 14  DVALAYAARNWPVFPCRAADEEFVDEDGLIEILATKTPLTSNGFRGATLNERIVRELWRR 73

Query: 49  LPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRM 108
            P    G   G      +  DID K            E       +           F  
Sbjct: 74  NPGAMIGVPTGAPI-GAWVLDIDPKHGGPDTLAALEAEHGALPATLTAETTSGGRHYFFK 132

Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
           +K G    +   +    +D+ G G Y +A    P   + Y W                + 
Sbjct: 133 HKAG---VRNRGALGAGIDVRGDGGYVIAACSVPAVGQPYRWLVDMEPVD------APDW 183

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228
            +E +         P   D  ++  + + +   N +Y  R + + L     E   G+ + 
Sbjct: 184 LLELVL--------PRSYDSTTMYQAPSVSGTINDRYVERAVQSELDDLAMEPM-GNRNN 234

Query: 229 WIP 231
            + 
Sbjct: 235 RLN 237


>gi|191172659|ref|ZP_03034198.1| replication protein [Escherichia coli F11]
 gi|190907132|gb|EDV66732.1| replication protein [Escherichia coli F11]
          Length = 684

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 84/626 (13%), Positives = 154/626 (24%), Gaps = 122/626 (19%)

Query: 33  LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89
           + +W   +++     +    P  G     G       A D DS+DE      + T   L 
Sbjct: 17  IAQWTGHVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 73

Query: 90  G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
           G   P        K L    ++ +  K+        G +++L  GQ FVA   H  +   
Sbjct: 74  GELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 132

Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
             W         ++ P ++ E +E L++   E     V  +      +  +        +
Sbjct: 133 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDD 188

Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK----------GKE--IARRWS 254
             E          +  NG    +I       H + G             G E    +   
Sbjct: 189 TAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGGDPTSTVYFPAGTAGFEQGHFKCLH 246

Query: 255 KQGSTYDEENFNYKW----DTFD--FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS--R 306
              +  D+ +F        D F+               F    +   +        +  R
Sbjct: 247 ASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLPLPAFERDKWGRIEATISNAAKAVVR 306

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
                    F  ++       A +  W                +IT     F    +E +
Sbjct: 307 PDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD-----ADYARLRITMEKRGFKPVGRELI 361

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
            D+     D                               +     +I  +     D   
Sbjct: 362 RDVVLLAAD-------------------------------EQPFDSAITWLNGLEWDGVP 390

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486
           R                           +  TP+        +                 
Sbjct: 391 RIECF-----------------YHTHFGTADTPYTRAVSMYMWT---------------- 417

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
               G  L  G KA     + G  G GKS+ +  +          + + +   +    E 
Sbjct: 418 -ALAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFAEK 466

Query: 547 GKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                 L R + G  +  I E    +      IK             Y    ++ P    
Sbjct: 467 DD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLV 523

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIP 631
                N+  F+ +      RR++ + 
Sbjct: 524 FVGTTNEDEFLADKTG--NRRWLPVE 547


>gi|222528751|ref|YP_002572633.1| Bifunctional DNA primase/polymerase [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455598|gb|ACM59860.1| Bifunctional DNA primase/polymerase [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 287

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 56/206 (27%), Gaps = 13/206 (6%)

Query: 33  LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL 88
               ++      K+ +     P    G   G      +  D+D +  K      +     
Sbjct: 57  PNGVKDATKDISKVKEWWLKKPWANIGIATGKIS-GFFVLDVDGEIGKEELRALEVEYDK 115

Query: 89  HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148
               + ++       I F+  +  +   +        +DI G G Y V      K+  +Y
Sbjct: 116 LPDTVEQLTGSGGKHILFKYPENIV--IQNKVGFIPKVDIRGDGGYIVVAPSIHKSGNQY 173

Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208
            W    H  +V +     +  ++ + +            K+     +         Y N 
Sbjct: 174 MWEAFSHPLEV-EIAEPPKWLIDMIAEK-----PSTPDGKRPPEWWRKLAQGVPEGYRNM 227

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVM 234
              + +     +  N      + +  
Sbjct: 228 SAASLMGLLLRKRINPVLATMLVIAW 253


>gi|302559042|ref|ZP_07311384.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           griseoflavus Tu4000]
 gi|302476660|gb|EFL39753.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           griseoflavus Tu4000]
          Length = 296

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 56/240 (23%), Gaps = 35/240 (14%)

Query: 15  HNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSS-----EKIDKLPACGF 54
             G+ ++PLR G KRP   G               KWE++  +            P    
Sbjct: 18  ACGWPVLPLRPGGKRPALHGENACPRTGPCAGGHLKWEQRATTDPDRIRAAWAAGP-FNV 76

Query: 55  GFVCGVGEQPLYAFDIDSKDEKTANTFKDT----FEILHGTPI---VRIGQKPKILIPFR 107
           G   G     L   D+D            T         G P+     +         + 
Sbjct: 77  GIATGPA--GLLVIDLDKPKSSADTPCGVTTFTALCERTGQPVPTTRTVRTASGGRHLYF 134

Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
               GI+   T  +    +D    G Y VA          Y          +     L +
Sbjct: 135 TAPAGIRLGNTAGALAPLVDTRAHGGYVVAPGSTTPAG-TYEVIHDDPVLPLPA--WLLK 191

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTW--TNNNNRQYTNREITAFLSCFGEEFYNGS 225
                  +     T          + ++             N ++       G     G 
Sbjct: 192 AVAPAPAQPVSLSTPRCGNRLADTVLAREVAAVATAQEGGRNAQLLTSARAVGRFVAWGD 251


>gi|260063427|ref|YP_003196507.1| hypothetical protein RB2501_01425 [Robiginitalea biformata
           HTCC2501]
 gi|88782871|gb|EAR14045.1| hypothetical protein RB2501_01425 [Robiginitalea biformata
           HTCC2501]
          Length = 754

 Score = 86.9 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 78/658 (11%), Positives = 178/658 (27%), Gaps = 79/658 (12%)

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF-RMNKEGIKKKKTTE 120
              +   D+D++D       +   E            +   L+ + +++ E   +     
Sbjct: 71  HSGIIGIDLDAEDNADLLANRARLEQDPHCYACHTSIRGFGLVWYVKVSPEKHLEAFQA- 129

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
                ++     QY V                 P    V     +S +       +    
Sbjct: 130 -----IERYLANQYGVV--------------VDPSGKDVSRLRFISYDPH----LYLNRG 166

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--GSHDEWIPVVMAVHH 238
           +    K                  Y + +I   L        N    +  W+    A+  
Sbjct: 167 SKKWSKYLNKKQREFREAPARAIAYHDEDIRHILEQIQNRGVNIAEDYHSWLHTSFALAS 226

Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
           E      G++     S Q S Y+    + ++D      +           + FY+  +  
Sbjct: 227 EFGEG--GRDYFHIVSAQSSKYERGKCDKQYD----IALRRDHTGGVGIGTFFYYCQQAG 280

Query: 299 PKGLLASRFSDAY--NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356
            +    +         + + S            T+ + +            L+KI    +
Sbjct: 281 IETRTPATIEAEIYYAQRLKSEPGIDRKEAIRSTEEYLQMRGVEPERTREALEKIKDIPV 340

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
           +   +++ +   L  E    +   +        +       E+    S  +       F+
Sbjct: 341 HQFQTVQVNDKVLELETFIKSLGLRFNEITRYYESGEGEQLEDRDYNSLYRKAMHAVGFN 400

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
           ++   L          D  L           ++    K TG               + G 
Sbjct: 401 VSQSKL------FALMDSDLITSYNPFTSFFRDNKHLKPTGCLEELLACFDYEKPDLDGV 454

Query: 477 --FESEEVMDYFTRCVGMALLG------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
              E EE  DY    +   LLG      G  +   + + G  G+GK+     +       
Sbjct: 455 ALTEDEEAADYLEVFLTRWLLGIISAMNGTFSLLVLVLTGEQGTGKTKFFRNL------- 507

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEINAAKIKQMTGGDCM 587
                  S        +  K N  +  LM  +++I  +  +  ++  A + K++   +  
Sbjct: 508 ----LPESLSSYQTENKLNKEN-DIAPLMTKKLIICDDEFSGKNKRQADEFKELVSKEKF 562

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
           + R  YG  + +           N    + +      RR I +     I + D     ++
Sbjct: 563 SVRKPYGKVWEDLTRYAVLCGTSNDDRVLYDMTG--NRRIIPV----KIRSIDHDRMAEI 616

Query: 648 ETKYTLEAKKWFLKGV-KAY---ISKGLDVDIPEVC-------LKAKEEERQGTDTYQ 694
           +         W  + +   +     + + ++            +   ++  + TD+  
Sbjct: 617 DKTELFMELYWMWRDLGDKWMLGKKERIYLNKCTGIHESENFEMDMVQKYFEPTDSLG 674


>gi|302343670|ref|YP_003808199.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM
           2075]
 gi|301640283|gb|ADK85605.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM
           2075]
          Length = 626

 Score = 86.5 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 73/232 (31%), Gaps = 30/232 (12%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQ 63
           E A++    G+  IP+   DKRP R   +++ +   +  +      P    G V G    
Sbjct: 3   EAAQRYASLGWAAIPV-GADKRPLRPWAEYQTRRPEAGALADWFGKPGAMVGIVTGKVSN 61

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
            L   D D+ +    +  +         PI      P+    +  ++EG+K         
Sbjct: 62  -LLVIDADNSEAI--SRVEALLPDGLEMPIATT---PRGRHYYFAHREGMKNAVGVM--- 112

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
             +D+   G Y VA    P   +   W   P      + P   E+ V    K        
Sbjct: 113 PAVDVRAEGGYVVAP---PGPGR--EWLVAPWDCAPPELPAQLEDVVRARAK-------- 159

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235
              +++     +     +  +   RE             +   DE   + +A
Sbjct: 160 ---ERQIASLKQGDVAPDPVRANLREREKGRDSRSRYGRHALADELTKIALA 208


>gi|262043412|ref|ZP_06016537.1| virulence-associated E family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039238|gb|EEW40384.1| virulence-associated E family protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 729

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 86/626 (13%), Positives = 161/626 (25%), Gaps = 122/626 (19%)

Query: 33  LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89
           +  W E +++     +    P  G     G       A D DS+D       +D    L 
Sbjct: 63  IKDWTEHVVTEHDFARWSKEPDYGICVRTG---NGWLALDCDSEDVDVQQKIRDLLAQLL 119

Query: 90  G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
           G   P  R     K L    +  +  K+    E   G +++L  GQ FVA   H  +   
Sbjct: 120 GVVPPRRRRANSNKCLYLLGVEGDFRKRIHRLEGELGIIELLANGQQFVACGTH-SSGAR 178

Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
             W         +D P ++ + +E L++   ++    V  +      +  +         
Sbjct: 179 IEWDNEL----PDDPPAVTTDQLETLWQQLADVLPVSVTTEAGSSKMRDRSTFTPGATDE 234

Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK----------GKEIARRWSKQ 256
             E          +  NG    +I       H T G             G ++       
Sbjct: 235 TAEYLDANGWTLLDGTNGER--YIRCPFEDGHSTGGDPTSTVYFPAGTAGFDLGHFKCLH 292

Query: 257 GSTYDEEN------FNYKWDTFD--FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS--R 306
            S     +         + D F+               F    +   +        +  R
Sbjct: 293 ASCAHRNDGDYLNAIGIRTDDFEDLTSTEVAEPLPLPAFERDKWGRIEATISNAAKAVVR 352

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
                    F  ++       A +  W                +IT     F    +E +
Sbjct: 353 PDFVDIDIRFDQFRDEIMFAPAGSGQWQAFTDP-----DYARLRITMEKRGFKAVGRELI 407

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
            D+     D                                               DS++
Sbjct: 408 RDVVLLAAD-------------------------------------------EQPFDSAT 424

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486
            +L   +G L+ +   +++     +   +  TP+        +                 
Sbjct: 425 TWL---NG-LEWDGVPRIEHFYHTHFG-TADTPYTRAVSMYMWT---------------- 463

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
               G  L  G KA     + G  G GKS+ +  +          + + +   +    E 
Sbjct: 464 -ALAGRVLEPGIKADMVPILVGRQGCGKSSGVEAL----------SPDPAFFTEISFAEK 512

Query: 547 GKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                 L R + G  +  I E    +      IK             Y    ++ P    
Sbjct: 513 DD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLV 569

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIP 631
                N+  F+ +      RR++ + 
Sbjct: 570 FIGTTNEDEFLADKTG--NRRWLPVE 593


>gi|315640373|ref|ZP_07895488.1| prophage Lp4 protein 7 [Enterococcus italicus DSM 15952]
 gi|315483878|gb|EFU74359.1| prophage Lp4 protein 7 [Enterococcus italicus DSM 15952]
          Length = 265

 Score = 86.5 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 61/229 (26%), Gaps = 33/229 (14%)

Query: 12  QAIHNGFKLIPLRLGDKRPQRLGKWE--------EQLLSSEKIDKLPACGFGFVCGVGEQ 63
             +  GFK++PL+   K P     +         +     E     P    G   G    
Sbjct: 6   DYLQAGFKVLPLQSNKKIPFTTETFTNGFKSATNDIQALKEHWVNYPESNLGIRVGEDT- 64

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTP-IVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
            L   DID  +     T     ++    P  + +         +    EGI+ ++     
Sbjct: 65  GLIVLDIDVHEVDGYKTLSAIEKVHEPLPNTLEVATPTGGKHYYFKLPEGIQIERQINQF 124

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
            G +DIL  G Y VA        K+Y          + +  +     ++           
Sbjct: 125 AG-IDILTNG-YVVAPPSSID-GKKYEIVNGS----LNEIAIFPTWFLKVFDTKKMNELP 177

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
                      +                 AFL         G  ++WI 
Sbjct: 178 VKPFFTVGKKYTG----------------AFLDELVAGCAKGGRNDWIM 210


>gi|220922585|ref|YP_002497887.1| bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
           2060]
 gi|219947192|gb|ACL57584.1| Bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
           2060]
          Length = 970

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 63/261 (24%), Gaps = 42/261 (16%)

Query: 10  AKQAIHNGFKLIPLRLGDKRP---------QRLGKWEEQLLSSEKIDKL----PACGFGF 56
           A      G+ + P     K+P          + G          +I       P    G 
Sbjct: 13  ALDYAIRGWPVFPCSPTTKQPLTRKESAPGAKDGGLHLATTDEAQIRAWWAKHPRAMIGI 72

Query: 57  VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI---GQKPKILIPFRM----- 108
             G     +   D+      T   + +      G              + + FR      
Sbjct: 73  PTGARTGNVLDLDLGDPAVITGAAYLERLREHVGGIPETAIAETGSGGLHLWFRADPDAP 132

Query: 109 --------------NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP 154
                           EG  +    ++    +D+ G G Y +      +  + YTW   P
Sbjct: 133 IANGANICPALFIPPAEGATRADGRKAKGAAIDVRGEGGYVIVPPSVREDGRAYTWCPGP 192

Query: 155 HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL 214
                +     +E  +  + K           +  S  P   W           ++    
Sbjct: 193 E----DGLSPPTEALLRLMRKEEARAARDAQAEAASRGP---WVPRPTDSIDPAQVLLDG 245

Query: 215 SCFGEEFYNGSHDEWIPVVMA 235
                 +   + D+ +  V A
Sbjct: 246 DEAVVRYGRAALDKEVAAVAA 266


>gi|289704576|ref|ZP_06501009.1| bifunctional DNA primase/polymerase [Micrococcus luteus SK58]
 gi|289558696|gb|EFD51954.1| bifunctional DNA primase/polymerase [Micrococcus luteus SK58]
          Length = 686

 Score = 86.1 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 72/252 (28%), Gaps = 31/252 (12%)

Query: 8   EQAKQAIHNGFKLIPLRL-GDKRPQRLGKWEEQLLSSEKIDKLP------ACGFGFVCGV 60
           + A+Q    G  +IP+R  G K P     W+    ++  +D             G  CG 
Sbjct: 7   DTARQMHAAGVNVIPVRHDGTKAPALKA-WQSHRTTAADLDAWFGGDDPRHRAIGAACGA 65

Query: 61  GEQPLYAFDI---------DSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK- 110
               L   +I         D      A    + +E ++G    R      +   +R+   
Sbjct: 66  LSGGLEMLEIEGAHVGLLEDVGRAAGAAGLLELWERVNGGWCERSP-SGGVHWFYRVEGM 124

Query: 111 --EGIKKKKTTESTQGHLDILGCGQYFVAYNI---HPKTKKEYTWTTPPHRFKVEDTPLL 165
              G  K   TE+ Q   +  G G   V         KT + +              P L
Sbjct: 125 DVPGNVKLAATEARQTIAETRGQGGQVVLAPSGGTTHKTGRAWERLDGG----PATVPTL 180

Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
           +  + E L   F+ +        +++      T          ++ A  + + E      
Sbjct: 181 TAAERETLHGLFRALDR---APARTVEHRPASTLAPADGARPGDLYAARTTWDELLTRHG 237

Query: 226 HDEWIPVVMAVH 237
                      H
Sbjct: 238 WQVHHRAGAETH 249


>gi|282892589|ref|ZP_06300862.1| hypothetical protein pah_c272o028 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497713|gb|EFB40082.1| hypothetical protein pah_c272o028 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 420

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 108/393 (27%), Gaps = 38/393 (9%)

Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216
            +++    L  +         ++        +++ I  +    +       ++       
Sbjct: 36  NRIKSNGCLWNDVFRAWIAPIKDKKAVESIFRENNISYEIKEISAPNSIIPKDAKTANLQ 95

Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE 276
              E               +        +      ++    S+   E+F     + + + 
Sbjct: 96  TCSEIL-------------LRKIFDEERELLADVYQY---DSSLRPEDF-KNPPSIEEKT 138

Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY------TADT 330
                 +            +   +  + +  SD   K +          +      +   
Sbjct: 139 EVQIQLENDFHRRFLDLEKQKEKQKSINNIISDQSEKILCHDAPVNTAKFLIKDSFSHQE 198

Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390
           +   +   N+ ++W  T              +++  +   E+ +         + +    
Sbjct: 199 ERTIQFCSNSFWLWKGTHYVEIDP-----NKIRQITYKFLEDAKVFKN--TCLKNFNPNQ 251

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK------V 444
            +   + +  +A+   +   A     I    + +S   +   +GI  +E   K      +
Sbjct: 252 NKVTQIIDALRAECFFEHHPANGTIWIDGRQIPNSRYVISFPNGIFSIEDWLKDEKIALI 311

Query: 445 KPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502
            PT  L  T      F        E+L  +   + E  E  +     +G  L    K Q+
Sbjct: 312 PPTPSLLNTSCLDFNFDPNATEPKEWLKFLESLWSEDIESQNAIQEWMGYLLTQDTKHQK 371

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
            + I G   +GK T+  +++   G   V     
Sbjct: 372 ILLIVGPPRAGKGTIARILETLLGASNVAGPTL 404


>gi|326330159|ref|ZP_08196470.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae
           bacterium Broad-1]
 gi|325951972|gb|EGD44001.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae
           bacterium Broad-1]
          Length = 302

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 16/203 (7%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65
           A    + G  + P   G K+P     ++    + E+++      P    G   G     +
Sbjct: 28  AATLANAGIPVFPCVPGAKQPLTAHGFKSATAAVEQVNDWWSKSPTANIGIPTGAVS-GI 86

Query: 66  YAFDIDSKDEKTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
              D+D     +  T  +      L     + +      L  +    +   + ++     
Sbjct: 87  AVVDVDVHGADSGFTAFNRAHRAGLVDAWELLVRTPSGGLHAYFSPAKA--EMRSWSLPA 144

Query: 124 GHLDILGCGQYFVAYNIH---PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
            HLD  G G Y VA       P  ++ Y            ++  L  + +    +  + +
Sbjct: 145 QHLDFRGDGGYIVAPPSRITTPDGERSY----GLIAVAQHESRPLDADRLRTFLEPVRIV 200

Query: 181 TVPLVKDKKSIIPSKTWTNNNNR 203
             P    +  + P +      NR
Sbjct: 201 QPPASLTRDGVRPDRLAAWVANR 223


>gi|218295952|ref|ZP_03496732.1| Bifunctional DNA primase/polymerase [Thermus aquaticus Y51MC23]
 gi|218243690|gb|EED10218.1| Bifunctional DNA primase/polymerase [Thermus aquaticus Y51MC23]
          Length = 298

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 59/168 (35%), Gaps = 18/168 (10%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQR---LGKWEEQLLSSEKIDKL----PACGFGFVCGV 60
           E A      G+ + PL  G+KRP         +E       I K     P CG G +   
Sbjct: 12  EAAVAYARLGYAVFPLTPGEKRPHGRLVPHGLKEASREEATITKWWRSCPGCGVGIL--- 68

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             + +   D D  D       K  +  L   P  R  +       F    + ++   T  
Sbjct: 69  APEEVLVLDFD--DPTAWERLKGEYPTLGDAPRQRTPKGG--YHVFLRLPQRVRLSATVR 124

Query: 121 STQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
              G +D+ G G+ Y VA        + YTW  P    K ED PL+ E
Sbjct: 125 KLAG-VDLRGMGKAYVVASPTRLADGRGYTWEVPL--VKPEDLPLIPE 169


>gi|145592628|ref|YP_001156925.1| hypothetical protein Strop_0062 [Salinispora tropica CNB-440]
 gi|145301965|gb|ABP52547.1| hypothetical protein Strop_0062 [Salinispora tropica CNB-440]
          Length = 391

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 61/235 (25%), Gaps = 55/235 (23%)

Query: 2   PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLG------------------KWEEQLLSS 43
                +E A  A   G+ + PLR  DKRP                       WE +  + 
Sbjct: 79  DATTLREVALAAALRGWHIFPLRPDDKRPAFPDHLADACTGRDPRCRNGHTGWEARATTD 138

Query: 44  -EKIDK-LPAC--GFGFVCGVGEQPLYAFDIDSKDEK-------------TANTFKDTFE 86
            ++I +       G G  CG     L   D+D +                +         
Sbjct: 139 PDRIRRGWSETPWGVGIACGP--SGLVVIDLDVRKPDQDAPPGNPHPAATSGIDVFAALC 196

Query: 87  ILHGTPI------VRIGQKPKILIPFRMNKEGIKKKKTTESTQGH----LDILGCGQYFV 136
              G PI      V  G+     + FR   +    + T           +D    G Y V
Sbjct: 197 ETAGQPIPDDTYAVTTGR-GGSHLYFRHPADSPALRNTAGERGNGLGWLVDTRAHGGYVV 255

Query: 137 AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
           A        + YT               L     E L         P+V D  + 
Sbjct: 256 AAGSTVA-GRSYTVARDLP------VAELPGWLAERLAPAPLPPQRPVVVDLPTG 303


>gi|124378237|ref|YP_001029430.1| GfV-D2-ORF1 [Glypta fumiferanae ichnovirus]
 gi|124270644|dbj|BAF45566.1| GfV-D2-ORF1 [Glypta fumiferanae ichnovirus]
          Length = 694

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 105/364 (28%), Gaps = 45/364 (12%)

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
                +      K + ++R      +A+F ++      Y      +Y  D     IW   
Sbjct: 351 DKDDDNIVTKNVKNVDSTRSEVELVRALFDVFPNLSIYYRYSHNTFYYCDA-KTNIWD-- 407

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
               + +   F   +++ +    +  E                    NV           
Sbjct: 408 ----SLTNDEFYHHIQQTLKSRIQLTEAE----------------LINVTTKDTIVKIID 447

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFVEGEP 465
            +         +  LDS S      +  +D+            E  I ++ G  +     
Sbjct: 448 IIMRKIEDVDFTKQLDSLSHIFVTDNKAIDMSIFPPVMRSIRCEDLIKRTNGWTYDPDLS 507

Query: 466 SQE---FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNL 520
            +         +          +F   +   L G    +  + +     G SGKSTL  L
Sbjct: 508 HKYKKSVQSYFNKLLPKPCEQIWFLSFIARMLNGKRSQEPCVILTDKRRGKSGKSTLTYL 567

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           +   FGN Y+ ++    + ++              L   R+ +   + ++  +    IK 
Sbjct: 568 LHAVFGNYYLNDSIIESLGKS-------------NLENKRLFVADGSKKDKTLTGDFIKS 614

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVP--NKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
           +   D +TA     NT+S  P      IV   +  L     D     R +  P      +
Sbjct: 615 IINSDYVTAEDTNCNTHSIFPIQAGLIIVSPKHDVLICDTNDKDLLNRIVTCPMRSRFVS 674

Query: 639 RDAS 642
           +  +
Sbjct: 675 KKKN 678


>gi|318060883|ref|ZP_07979604.1| hypothetical protein SSA3_23263 [Streptomyces sp. SA3_actG]
 gi|318075930|ref|ZP_07983262.1| hypothetical protein SSA3_04265 [Streptomyces sp. SA3_actF]
          Length = 296

 Score = 85.7 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 48/172 (27%), Gaps = 29/172 (16%)

Query: 15  HNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSS-EKIDK-LP--ACGFG 55
             G+ + PLR G KRP   G                WE++  +  ++I +         G
Sbjct: 14  ERGWPVFPLRPGSKRPALHGETRCPRSGPCASGHLGWEQRATTDPDRIRRAWASGDYNVG 73

Query: 56  FVCGVGEQPLYAFDIDSK-----DEKTANTFKDTFEILH-GTPIVRIGQKP-KILIPFRM 108
              G     L   D+D           A   +   E      P  R  + P      +  
Sbjct: 74  LATGPA--NLLVVDLDVPKPGAEGPDGAAHLRALTERHGQPMPSTRTVRTPSGGAHLYFP 131

Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
                +   T  +    +D    G Y VA      T + Y    P     + 
Sbjct: 132 APLAARLHNTAGTLAPLVDTRAWGGYVVAPGSILPTGR-YESVAPFALRPLP 182


>gi|184200566|ref|YP_001854773.1| hypothetical protein KRH_09200 [Kocuria rhizophila DC2201]
 gi|183580796|dbj|BAG29267.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 301

 Score = 85.3 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 30/209 (14%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA-CGFGFVCGVGEQPL 65
           ++       +GF L+PL  G+KRP      +   +   ++D+ P   G G  CG     L
Sbjct: 27  RDHLYALAIHGFHLLPLIPGEKRPAITDWEKRATVDPAQLDRWPKGAGVGIACGR--SGL 84

Query: 66  YAFDIDSKD------------EKTANTFKDTFEILHGT-----PIVRIGQKPKILIPFRM 108
              D DS                  + F D +                     + + FR 
Sbjct: 85  VVIDCDSHGSTPPPEWDRPGIRDGVDVFADLWSRHSPNVSMFDTFTVTTPSGGLHLYFRA 144

Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
                 + +     +  +D+   G Y      + K    YT    P          L + 
Sbjct: 145 PVG--SRIRNRTGVEWQVDVRAHGGYACGPGTNLKQG-TYTPAGDPG-----KLLPLPQW 196

Query: 169 DVEYLF--KFFQEITVPLVKDKKSIIPSK 195
             + L   +  Q   +P+    +S    +
Sbjct: 197 LHDMLAPQEPAQRRPMPVAPPTRSQADRR 225


>gi|291453089|ref|ZP_06592479.1| hypothetical protein SSHG_03382 [Streptomyces albus J1074]
 gi|291356038|gb|EFE82940.1| hypothetical protein SSHG_03382 [Streptomyces albus J1074]
          Length = 288

 Score = 85.3 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 45/186 (24%), Gaps = 35/186 (18%)

Query: 15  HNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSSEKIDK--LP--ACGFG 55
             G+ + PLR G KRP                    WE +  +     +          G
Sbjct: 5   ERGWPVFPLRPGGKRPALHPETRCPHAGACTNGHVTWERRATTDPDRIRAAWSTGDWNIG 64

Query: 56  FVCGVGEQPLYAFDID----SKDEKTANTFKDTFEILHGTPI---VRIGQKPKILIPFRM 108
              G     L   D+D      D               G P+     +         +  
Sbjct: 65  LATGPA--RLVVIDLDKPKDGTDAPDGAANLLALCEHAGQPVPTTRTVRTASGGTHLYFS 122

Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
             +G + + T  +    +D    G Y +A          Y    P     +         
Sbjct: 123 APDGTRLRNTAGALGPLIDTRAHGGYVLAPGSVI-NGHAYRVEGPALIRPL------PGW 175

Query: 169 DVEYLF 174
            +E L 
Sbjct: 176 LLERLA 181


>gi|239981226|ref|ZP_04703750.1| hypothetical protein SalbJ_17449 [Streptomyces albus J1074]
          Length = 296

 Score = 85.3 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 45/186 (24%), Gaps = 35/186 (18%)

Query: 15  HNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSSEKIDK--LP--ACGFG 55
             G+ + PLR G KRP                    WE +  +     +          G
Sbjct: 13  ERGWPVFPLRPGGKRPALHPETRCPHAGACTNGHVTWERRATTDPDRIRAAWSTGDWNIG 72

Query: 56  FVCGVGEQPLYAFDID----SKDEKTANTFKDTFEILHGTPI---VRIGQKPKILIPFRM 108
              G     L   D+D      D               G P+     +         +  
Sbjct: 73  LATGPA--RLVVIDLDKPKDGTDAPDGAANLLALCEHAGQPVPTTRTVRTASGGTHLYFS 130

Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
             +G + + T  +    +D    G Y +A          Y    P     +         
Sbjct: 131 APDGTRLRNTAGALGPLIDTRAHGGYVLAPGSVI-NGHAYRVEGPALIRPL------PGW 183

Query: 169 DVEYLF 174
            +E L 
Sbjct: 184 LLERLA 189


>gi|291283822|ref|YP_003500640.1| putative P-loop ATPase-like protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|290763695|gb|ADD57656.1| Predicted P-loop ATPase-like protein [Escherichia coli O55:H7 str.
           CB9615]
          Length = 728

 Score = 85.3 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 84/626 (13%), Positives = 154/626 (24%), Gaps = 122/626 (19%)

Query: 33  LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89
           + +W   +++     +    P  G     G       A D DS+DE      + T   L 
Sbjct: 63  IAQWTGYVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119

Query: 90  G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
           G   P        K L    ++ +  K+        G +++L  GQ FVA   H  +   
Sbjct: 120 GELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178

Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
             W         ++ P ++ E +E L++   E     V  +      +  +        +
Sbjct: 179 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDD 234

Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK----------GKE--IARRWS 254
             E          +  NG    +I       H + G             G E    +   
Sbjct: 235 TAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGGDPTSTAYFPAGTAGFEQGHFKCLH 292

Query: 255 KQGSTYDEENFNYKW----DTFD--FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS--R 306
              +  D+ +F        D F+               F    +   +        +  R
Sbjct: 293 ASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLPLPAFERDKWGRIEATISNAAKAVVR 352

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
                    F  ++       A +  W                +IT     F    +E +
Sbjct: 353 PDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD-----ADYARLRITMEKRGFKPVGRELI 407

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
            D+     D                               +     +I  +     D   
Sbjct: 408 RDVVLLAAD-------------------------------EQPFDSAITWLNGLEWDGVP 436

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486
           R                           +  TP+        +                 
Sbjct: 437 RIECF-----------------YHTHFGTADTPYTRAVSMYMWT---------------- 463

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
               G  L  G KA     + G  G GKS+ +  +          + + +   +    E 
Sbjct: 464 -ALAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFVEK 512

Query: 547 GKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                 L R + G  +  I E    +      IK             Y    ++ P    
Sbjct: 513 DD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLV 569

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIP 631
                N+  F+ +      RR++ + 
Sbjct: 570 FVGTTNEDEFLADKTG--NRRWLPVE 593


>gi|145354403|ref|XP_001421475.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581712|gb|ABO99768.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 724

 Score = 84.9 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 95/764 (12%), Positives = 195/764 (25%), Gaps = 112/764 (14%)

Query: 20  LIPLRLGDKRPQRLGKW-EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTA 78
           LIPL   +K P     + +E          +P   +G + G     +   D D    K  
Sbjct: 3   LIPLD-QNKEPTCGRGFLDEANYEQNTQKVIPGEMYGVLTGRP-NRVLVIDWDCYGGKCE 60

Query: 79  NTFKDTF---EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135
               +     ++      +   +       F  ++E     K T   +G +DI   G Y 
Sbjct: 61  FELTEEMLTRKVGGEGAYIVKTRSGGYHTYFAWDEERFGDWKGTVGIEGFVDIRTTGNYV 120

Query: 136 V---AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
           V   A          Y          + + P +  +   +L             +     
Sbjct: 121 VGADAPG--------YELLRG----DINNLPPMPNDLYSFLDGKVGHKVERADTECS--- 165

Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252
                       +T   +T  L   G    +     W+    +   E       +     
Sbjct: 166 ------------FTQASVTPLLEEMGFTGIH-----WLSGATSYDFECDQCRPQRGTTVG 208

Query: 253 WSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN 312
                  + E N     + F   E+G              +HG   P+            
Sbjct: 209 QCPCCGGFHEGNGRGGGNHFYVAEVGLGV-------LTVKNHGNCKPRQF---------- 251

Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS---MKEDVFDL 369
                 ++ G  +     K   +  +     +     +    +   L       +  +  
Sbjct: 252 -----RFEVGCLVTGITEKEQNEIKEGTSAGYIEVRREFEKHVAKILTKDLFCDDSCYGT 306

Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
           + +    ++ +   R+   +      V    K     +         +  D LD   +  
Sbjct: 307 TGDITKFSEAALVRRYRELSFVDENGVLRKGKKNGFIEKWLDDDNKRVY-DTLDVVPK-- 363

Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTR 488
              +   +L  G  V+            +   +    + FL+L+      SE  ++Y   
Sbjct: 364 NCSNKTYNLWRGYPVEG---------IPSELGKEGDVKPFLELLLVLCGGSENALEYALN 414

Query: 489 CVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
                      K    +  RGV G+GK T ++L+    G              +   +  
Sbjct: 415 WFACLFQRPEEKPITSLVFRGVQGTGKGTFLHLLHALMGK-------TFHETADPKKDIF 467

Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
             + ++I      + +        ++    +K M      T    +   Y         F
Sbjct: 468 GTHANMIEGK-KCLALNEADECIMKMYRKLLKSMLTDTSFTINPKHVQLYVIMNLVGFLF 526

Query: 608 IVPNKHLFVRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
              + +       D   RR++V+ P    + ++     +  +           +      
Sbjct: 527 FSNDDYPVFLEMSD---RRFVVMEPLLTHLNDQTGFLKEFRDVYIKDLRNLRAIYDHLM- 582

Query: 667 ISKGLDVDIPEVCLK--AKEEE----RQGTDTYQAWIDDCCDIG-ENLWE----ESHSLA 715
              GLD+   +        +      R     +  W + C  +     W      +  + 
Sbjct: 583 ---GLDLSTFDYVKDRPTTDAYSEMKRGCMPKFTRWFEHCVTVEFPEKWVGNKIRNSDIF 639

Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
             Y  +            S   V   LK   F    K  +I   
Sbjct: 640 IEYQTWLPAATRGQD---SATRVGNKLKD--FFKKEKGHRIPMR 678


>gi|312876298|ref|ZP_07736284.1| Bifunctional DNA primase/polymerase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796944|gb|EFR13287.1| Bifunctional DNA primase/polymerase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 277

 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 8/155 (5%)

Query: 33  LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL 88
               ++      K+ +          G   G      +  D+D +  K      +     
Sbjct: 50  PNGVKDATKDINKVKEWWTKKLWANIGVATGKIS-GFFVIDVDGEIGKEELRSLELEHSK 108

Query: 89  HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148
               + ++       I F+   + +            +DI   G Y V      K+  +Y
Sbjct: 109 LPDTVEQLTGSGGKHILFKYPSDVV--IPNKVGFIPKVDIRSDGGYIVVAPSIHKSGNQY 166

Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
            W    H F+V +        ++ + +       P
Sbjct: 167 MWEALSHPFEV-EIAEPPNWLIDLIAEKPTGGKRP 200


>gi|256006071|ref|ZP_05431004.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
           2360]
 gi|255989961|gb|EEU00110.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
           2360]
          Length = 207

 Score = 84.6 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 45/169 (26%), Gaps = 25/169 (14%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     K P   G ++      E+I K  
Sbjct: 7   DAALKYAEANIPVIPLHWICEDGSCSCKEGSNCDSKGKHPLYTGWYKNSTAYVEQIRKWW 66

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              P    G   G     L   D+D   ++T +  + T   L  T     G+  +    F
Sbjct: 67  TKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATHGKLPDTVTAVTGRGGR-HYVF 124

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH 155
           +  +   +           LD        V       +  +Y W     
Sbjct: 125 KYPQG--RSIPNKTKFAPDLDTRSTDGLIVVAPSIHVSGNQYQWLEGHS 171


>gi|302553095|ref|ZP_07305437.1| hypothetical protein SSQG_04324 [Streptomyces viridochromogenes DSM
           40736]
 gi|302470713|gb|EFL33806.1| hypothetical protein SSQG_04324 [Streptomyces viridochromogenes DSM
           40736]
          Length = 295

 Score = 84.2 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 52/212 (24%), Gaps = 44/212 (20%)

Query: 15  HNGFKLIPLRLGDKRPQ----------------RLGKWEEQLLSSEKID-KLP--ACGFG 55
             G+ +IPL    KRP                      +    + E I           G
Sbjct: 10  ERGWPVIPLLPNAKRPAGHPERACPGTGRCASGHRKPEQRATTNPELIRATWATRPYNVG 69

Query: 56  FVCGVGEQPLYAFDIDSKDEK------TANTFKDTFEILHGTPI-----VRIGQKPKILI 104
              G     L   D+D    +         T         G  +     VR  +  +   
Sbjct: 70  IATGPA--GLLVIDLDVCKPEEPKGAPDGATSLKALCERTGHTVPATYRVRTARGGE--H 125

Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
            +     G++ K +      H+D    G Y VA          Y           ++ P+
Sbjct: 126 LYFTAPAGMRLKNSANRLGPHIDTRAWGGYVVAPGSTTP-DGAYEVN--------DEAPV 176

Query: 165 LS-EEDVEYLFKFFQEITVPLVKDKKSIIPSK 195
                 +  L     +  V  +   +    + 
Sbjct: 177 APLPWWLAALLTEHPKPAVVELAPVRDGTRAA 208


>gi|152990211|ref|YP_001355933.1| hypothetical protein NIS_0462 [Nitratiruptor sp. SB155-2]
 gi|151422072|dbj|BAF69576.1| hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 718

 Score = 84.2 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 76/638 (11%), Positives = 168/638 (26%), Gaps = 109/638 (17%)

Query: 19  KLIPLRLGDKRPQRLGK---WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDE 75
             IP    + +         W +   +   + +  A G GFV      P    D+D   +
Sbjct: 26  TKIPYNPNNGKKASSTDPLAWGDIDEAQAGLVRYGANGLGFVL-TKSDPFVFIDLDHVLD 84

Query: 76  KTANTFKDT----FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
           +      +      + +     +        ++      + IK K T       L++   
Sbjct: 85  ENKRVKCEWARQLLKEIKSYTEISPSGDGLHVVVSGKLPDYIKHK-TKFDDGSALEVYES 143

Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
           G+Y           ++                 + E D+  L +F +          +  
Sbjct: 144 GRYMTITGEVFD-GRD----------------DIKELDLSILGEFAEHKIETKNAPVQIE 186

Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG--SHDEWIPVVMAVHHE-----TRGSS 244
             +            + E    L     ++ +     D+W  + M+  +       +   
Sbjct: 187 SATT----------LDDEAIIDLMKRKGQWPDAPKDGDDWSSLDMSFANRLAFWCGKDIE 236

Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304
           +   I R+       +D       +     ++  D                   P     
Sbjct: 237 RMDRIFRQSPLMRQKWDRPTAGSTYGRITLKKACDFVDSVYDPALRNESDCPFEPYNEEG 296

Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
              +D   K    +YK    L T   + W+                              
Sbjct: 297 GPRNDKEEKDPLWLYK---VLLTKGIEVWF------------------------------ 323

Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
              D+  E     +N++      ++  +          K+ A     G+      +  + 
Sbjct: 324 ---DIKLEKYGIKRNNRVDYIAKSSLQQIVFEIIGKTPKNIAVPTYIGAYEPSKPEKWEE 380

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVM 483
                    GI  +   +         + K      +     +   +L+   F+   + M
Sbjct: 381 E--------GIKYINLFKPTP------LMKVKPVKEMP----EIVKNLLLNLFDYDAKSM 422

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
             F   +        +        G  G+GK  L++L+K  F      N   +++     
Sbjct: 423 GLFINWLAFIYQYKERTGVAWIFMGKQGTGKGLLVDLLKKIFEEHMSSNITDANLDSQF- 481

Query: 544 PEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                 NP L   +   +  +S  N ++  +   ++K     + +           E   
Sbjct: 482 ------NPYLYNKLIVHLNEVSADNRKSRMLVKNRLKTWITDETLYINRKNMKE-VEIKN 534

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
                I  N+ + V   D    RR+ VI  +  +  ++
Sbjct: 535 FCNFIINSNETIPVDIEDSD--RRFNVIECNNVLKEQE 570


>gi|306833439|ref|ZP_07466566.1| prophage Lp4 protein 7 [Streptococcus bovis ATCC 700338]
 gi|304424209|gb|EFM27348.1| prophage Lp4 protein 7 [Streptococcus bovis ATCC 700338]
          Length = 574

 Score = 84.2 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 13/225 (5%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-IDKLP---ACGFGFVCGVGEQ 63
           E A      GF++ PL+   K  Q +  W+E+  +  + I           G   G    
Sbjct: 6   ESALNYAREGFQVFPLQSNSKSKQIVKSWKEKATTDNEVIQNWFSNTDYNVGVRTG---N 62

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
                DID+K E         F     +  +         + +R+++E            
Sbjct: 63  GFIVIDIDNKSEVNGYESIKLFLKDFPSTKIVKTPNNGWHMYYRVDRE----ISCRTGIV 118

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
             +DI G G Y V         + +     P     E      E  ++ + +   E+   
Sbjct: 119 KGVDIRGDGGYVVGIGSVVNGNRYFVSRDEPIAQANEAIYRFLE--MKSMNRKNLEVEEG 176

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228
           + + K++    +       + +++  I   L    E   N   DE
Sbjct: 177 IYQGKRNDYLFRMGCFLQQKGFSDEAIECCLKKENEWKCNPPLDE 221


>gi|283851766|ref|ZP_06369044.1| Bifunctional DNA primase/polymerase [Desulfovibrio sp. FW1012B]
 gi|283572886|gb|EFC20868.1| Bifunctional DNA primase/polymerase [Desulfovibrio sp. FW1012B]
          Length = 832

 Score = 84.2 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 66/255 (25%), Gaps = 44/255 (17%)

Query: 8   EQAKQAIHNGFKLIPL----------------RLGDKR----------PQRLGKWEEQLL 41
           E A +   +G  + P                    DKR          P+  G ++    
Sbjct: 22  EHALKYAASGKSVFPCWERDETEAEYQARLSTMPEDKRAAAKRWEAKNPRVAGGFKAATT 81

Query: 42  SSEKI----DKLPACGFGFVCGVGEQPLYAFDIDSK----DEKTANTFKDTFEILHGTPI 93
              KI     + P    G   G      +  D+D      +    +T           P 
Sbjct: 82  DESKILFWWQRWPDAAIGCPTGPAL-GAWVLDVDLPKIPGEPDGRDTLARLEADHGALPA 140

Query: 94  VRIGQKP--KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT 151
               +         F+ + +G + K T       LD  G G Y +           Y WT
Sbjct: 141 TVTQRTGSGGEQRFFKWSPDGPEIKNTGSKIGPKLDTRGAGGYVIMPPSLHPAGNRYAWT 200

Query: 152 TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT 211
           +        +        +E +    +    P ++ + S   +  +         ++  +
Sbjct: 201 SNGV-----ELAEAPAWLIELIL--VKPTPEPRMERQASTRTATGYGRAALEAEASKVAS 253

Query: 212 AFLSCFGEEFYNGSH 226
           A            ++
Sbjct: 254 APQGQRNGTLNAAAY 268


>gi|195546631|ref|YP_002117659.1| p101 [Rhizobium phage 16-3]
 gi|102642581|gb|ABF71362.1| p101 [Rhizobium phage 16-3]
          Length = 722

 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 28/249 (11%)

Query: 8   EQAKQAIHNGFKLIP----------------LRLGDKRPQRLGKWEEQLLSSEKI----- 46
           + A+  I  G  + P                +   +K P      +    S+  +     
Sbjct: 19  DIARSYIAAGVPVFPCRERASEDIDQATGEYVDYAEKAPYNPNGLKGATTSARIVGIWFG 78

Query: 47  DKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIV--RIGQKPKILI 104
           ++ P    G   G      +  D+D   ++  + +    E  HG      R         
Sbjct: 79  ERYPGALIGLPTGEPL-GAWVLDLDRHGDRDGHAWLAEMEAKHGALPETARASTANGGTH 137

Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
            F  +  GI+ +         +D  G G Y           + Y W        +     
Sbjct: 138 IFFKHVAGIRNRAAI---APGVDTRGDGGYVCGPGSQMADGRRYQWIDY-DGDGLPPIAD 193

Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
                ++ L     E          +  P  +       +    E+    +    +    
Sbjct: 194 APAWLIDLLKPKVVEAAERRQPSTYTYQPEDSGAARYAAKSFEMELEKLRNSPSGQRGQQ 253

Query: 225 SHDEWIPVV 233
                  + 
Sbjct: 254 LFASACSIG 262


>gi|56479563|ref|YP_161152.1| hypothetical protein ebA7287 [Aromatoleum aromaticum EbN1]
 gi|56315606|emb|CAI10251.1| hypothetical protein ebA7287 [Aromatoleum aromaticum EbN1]
          Length = 833

 Score = 84.2 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 126/419 (30%), Gaps = 33/419 (7%)

Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438
           +    RF      +    +   +       +    I                 +   LD 
Sbjct: 401 DELLERFALIYGEKEAVFDRQERMIVPLAGMRNICISRELHRRWMEHPTKAIVR---LDN 457

Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-DLVSGYFESEE----VMDYFTRCVGMA 493
                 +  +++      G P        E L DL++    +EE    V  +  + +   
Sbjct: 458 VGFDPTEKDRKITCNTYAGWPTKPKAGCCEMLIDLLAYLCSAEENADAVYQWLMKWLAYP 517

Query: 494 L-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
           +   G K Q  + + G  G+GKS     I   +G   +   +A+ I  +R          
Sbjct: 518 IQRPGAKMQSAVVMHGPQGTGKSQFFKAISSIYGPYGLTINQAA-IENHRNTWLASRLFI 576

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           L         +++        NA  +K++  G+ +     + N Y E       F    +
Sbjct: 577 LAE------EVVARQELYQVKNA--LKELVTGETVYVDPKFVNAYEEKNHVNIVFNSNEE 628

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
              V   DD   RR++V+         D   A K E +    A       +         
Sbjct: 629 MPIVLEDDD---RRHLVVRTPYAPQPEDFYRAVKREIEEGGIAALHA--HLLDLPLGDFT 683

Query: 673 V-DIPE--VCLKAKEEERQGTDT--YQAWIDDCCD-IGENLWEESHSLAKSYSEYREQEL 726
               P       A ++    + T  Y+ ++    + I   +   +  +  +Y  +     
Sbjct: 684 PHTKPPMTASKAALQDLALDSTTRFYREFVAGAIEGIKPGVVAIATDVFDAYRTWCN--- 740

Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
             + K      +   L++K  I   ++  +  + K      G+   P +    D + I+
Sbjct: 741 RINVKPAPMPRLINALEKKHRIECARKRYLGADGK-VMGPHGVCFIPEYREQPDRTRIL 798


>gi|163782228|ref|ZP_02177227.1| hypothetical protein HG1285_18884 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882760|gb|EDP76265.1| hypothetical protein HG1285_18884 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 880

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 73/234 (31%), Gaps = 19/234 (8%)

Query: 11  KQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKLPAC----GFGFVCGVGEQPL 65
           K     GF ++P   G KRP     ++  +  S E   +L           VCG     +
Sbjct: 17  KAYYELGFCVLPAIKGKKRPSLNWREFISERPSLEDTLRLFEGKIDPNLCIVCGEVS-GV 75

Query: 66  YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI-LIPFRMNKEGIKKKKTTESTQG 124
              DID  ++  A   +    +     I    +  K   I F+   E I  ++  E    
Sbjct: 76  VVLDIDGPEKFKAWLREKDKGLKSPLSIPSAIKTGKGFHIWFKHPSEDIGVRRFPEH--- 132

Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT-----PLLSEEDVEYLFKFFQE 179
             ++ G G   +       +   Y W        +E        L   E  ++L +  +E
Sbjct: 133 GFELRGTGGIVIVPPSLHPSGGIY-WPLHLEERSLEALLSWLKKLTLPELPDWLLEVAKE 191

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
                ++ +      +    +   Q T +++   L      F+   H   +   
Sbjct: 192 DEKRAIRYESDTPTLEGVELS---QETAQKLKTLLKEDLLPFWTEGHRHELACG 242


>gi|288918371|ref|ZP_06412724.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f]
 gi|288350266|gb|EFC84490.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f]
          Length = 794

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 65/612 (10%), Positives = 149/612 (24%), Gaps = 99/612 (16%)

Query: 25  LGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCGVGEQPLYAFDIDSKDEKTANT 80
            G K P+    ++E      +I     + P C +G V       L   D+D    + A+ 
Sbjct: 54  PG-KHPRTASGFKEATADRVQIRTWVRQWPGCNWGGVTA----GLVVVDLDG--PRGADG 106

Query: 81  FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI 140
           +    +     P +         + +R N   +    +  +    +DI   G Y V    
Sbjct: 107 WAALVDEHGEAPTLTHRTGRGRHLIYRQNGTKVSNSASKIADS--IDIRADGGYVVLPGS 164

Query: 141 HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200
              + + Y         +           V                   +  P       
Sbjct: 165 LHPSGRLYETEQAGAVVE------APRWLV------VSATAPRSTATSSTDGPRPGRLGE 212

Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260
                 + +     +C          + +  +           + G      ++ + +  
Sbjct: 213 AIPYGAHDDTLFKYACLLRSRNIDKAEAYALIE---KRRLDCQNGGPSEVAGFTAEAARA 269

Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
             +     WD +     GD   K S          +L+   L             F++ K
Sbjct: 270 KVDEV---WDRYPAGRGGD-GDKPSGGRGPSQ-ATQLVNLALERYELGQTDEGEPFAVSK 324

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
            G                           ++          +    F+ S     N+  +
Sbjct: 325 GGDVRIA----------------------RMLRGAGGLRAELSALYFERSGSAPSNSGLA 362

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
            +         R +  + +   + T    +      I     ++    +    G   +  
Sbjct: 363 DALVALEGFARRGE--KRSVAYRVTRDEADPARPVVIDLGEEETGRAVVVRPGGWEVVSN 420

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY--FTRCVGMALLGGN 498
              +         +S  T  +        LD +     +    D+      +  +L+   
Sbjct: 421 APVL-------FRRSALTKPLPTPERGGALDALRELL-NVSDRDWALLVAFLVASLIPEI 472

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
                +   G  G+ K+  M  +                               ++   G
Sbjct: 473 PHPVLLI-TGEHGTAKTGAMVTLVSLIDPSAAPT----------RATPRDYEQWVVAASG 521

Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
           S ++ +   +   +  +  + + + GD M  R  Y +                     R+
Sbjct: 522 SWVIPLDNVSYIADWFSDAVCKASTGDAMVRRTLYAD---------------------RD 560

Query: 619 PDDAWWRRYIVI 630
                +RR ++I
Sbjct: 561 LTVDTFRRVVII 572


>gi|284030144|ref|YP_003380075.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
 gi|283809437|gb|ADB31276.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
          Length = 308

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 63/262 (24%), Gaps = 36/262 (13%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSS----EKIDKLPACGFGFVCGVGEQPL 65
           A      G  + PL  G K P  +  WE    +      +I +      G   G     L
Sbjct: 25  AHWHADRGMAVFPLVPGRKTPA-VEDWEHAATTDHLSIAQIWRRAPYNIGVAAGR--SGL 81

Query: 66  YAFDIDSKDEK-------------------TANTFKDTFEILHGTPIVRIGQKPKILIPF 106
              D+D                         A    D  + L  T  V           +
Sbjct: 82  VVVDLDRPKGAGDTAPEPWHSRGAASGGDVLALLAADAGQELPATYTVATASGGS--HLY 139

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
               +GI+   T       +D  G G Y VA            W         +  P   
Sbjct: 140 FRQPDGIRLGNTAGRLGWKIDTRGHGGYVVAAGSVTFAG----WYATTSLTAPQPLP--- 192

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
                 L +   + T      ++    +  +T        ++ + A      +     + 
Sbjct: 193 AWITGALTRSPDQPTAARTATQQL-KDASAYTLAAVSGELDKLLAATEGHRNDTLNRAAF 251

Query: 227 DEWIPVVMAVHHETRGSSKGKE 248
                V   +  ++    +   
Sbjct: 252 ALGQLVGADLLDQSTARDELLS 273


>gi|42543571|pdb|1RO0|A Chain A, Bifunctional Dna PrimasePOLYMERASE DOMAIN OF ORF904 FROM
           The Archaeal Plasmid Prn1- Triple Mutant F50mL107ML110M
           Semet Remote
 gi|42543572|pdb|1RO2|A Chain A, Bifunctional Dna PrimasePOLYMERASE DOMAIN OF ORF904 FROM
           The Archaeal Plasmid Prn1- Triple Mutant F50mL107ML110M
           Manganese Soak
          Length = 216

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 26/207 (12%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----CGFGFVCGV 60
             AK  + +GF +IP+    K+P  +   K+  ++ S E+  +          +    G 
Sbjct: 6   RYAKWMLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ 65

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--------FRMNKEG 112
             + +   D +SK++  A   +   E L    +        I I          ++N   
Sbjct: 66  --KGMVIMDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 123

Query: 113 IKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLLSE 167
            +  K     Q +   +LG G      +      P  ++ YT     +     +   +S+
Sbjct: 124 EENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLY----NELKEISK 179

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPS 194
            D++ L +F  E    L          
Sbjct: 180 VDLKSLLRFLAEKGKRLGITLSKTAKE 206


>gi|167999191|ref|XP_001752301.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696696|gb|EDQ83034.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 416

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/379 (12%), Positives = 102/379 (26%), Gaps = 100/379 (26%)

Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
                + +S  + +  +   ++    +  ++                   ++ +   +  
Sbjct: 125 EVKWALKSSKASMMKEILTGMYKFIADVCES-----YTETIKPATKIIDFIQSSDNRRKM 179

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
             +           +LLDS    +G + G+ +    +  +   + YIT ST  PFV  + 
Sbjct: 180 MYTCAGMLYKEGFEELLDSRKDVIGMKGGMYNFIEDRFRRMEPDDYITLSTRIPFVPLDC 239

Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
                                                         + K+T  N +    
Sbjct: 240 ----------------------------------------------NSKAT--NEVLDLL 251

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
                     S +M+ R  ++  A P L  L    I  + E +E D++N   +K++TG D
Sbjct: 252 -----AKMPTSLVMRKR-VQSLAATPELAMLKERLIAFVQELDEGDKLNLGVMKELTGND 305

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
            +                       +  L +   D         I F   I         
Sbjct: 306 SLYIE------------------SSHDPLTMHLKD---------INFSNKIP-------- 330

Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
                      ++ ++  K Y++    ++ P       E      D +  ++    +   
Sbjct: 331 ----LLAPVFMRFVIEEYKQYLT--YRLEEPNEVKDCTEIICVSNDIFGQFLSANVEKNG 384

Query: 706 NLWEESHSLAKSYSEYREQ 724
                   L  +Y  + + 
Sbjct: 385 KSIVAIKELYDTYKYWSKD 403


>gi|124378226|ref|YP_001029423.1| GfV-C20-ORF1 [Glypta fumiferanae ichnovirus]
 gi|124270633|dbj|BAF45559.1| GfV-C20-ORF1 [Glypta fumiferanae ichnovirus]
          Length = 972

 Score = 83.8 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 64/484 (13%), Positives = 131/484 (27%), Gaps = 62/484 (12%)

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA-----YNKAMFSIYKKGHFL-- 325
           + +    T   +    +L     KL+          D      +N       +    L  
Sbjct: 444 NHKRGRKTCDLQRIHKALRKETMKLLSIKSGKIFAKDDNCIVYFNNKNSDATRDDIKLVQ 503

Query: 326 ----YTADTKAWYKKDKNNVYIWS--LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379
                  + K  Y    N +        + +I           K+  F L     +  + 
Sbjct: 504 ALYAAKPNIKTRYCYSGNTISCCDPKTNVWEIIGE--------KKFDFHLRTYLTEIAE- 554

Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439
                    T    +++   +   +    +  G   +  ++ L+S        +  +D  
Sbjct: 555 ------IKLTKAELKHMNTKNAIANIRNIILGGVEITNFANRLNSKLHLFITDNKTIDTS 608

Query: 440 --TGQKVKPTKELYITKSTGTPFVEG---EPSQEFLDLVSGYFESEEVMDYFTRCVGMAL 494
                      E     + G  +      +  +      +  F  +   D+F   +   L
Sbjct: 609 SIPPIIRHIEIEDLAKTTCGWSYNSELAAKYKEPVQSYFNTLFPEQSERDWFLSFIARFL 668

Query: 495 LGGNKAQRFIHIRG--VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
            G    + F+ +     G +GK TL  L+K  FG+ Y+ N+        R          
Sbjct: 669 NGRRMDEPFLILTDEHEGKTGKKTLAKLLKAVFGSYYLSNSTIVRAGGTRENNEFAG--G 726

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL---NYGNTYSESPASFTPFIV 609
           L      R+++     + D +N   IK +TG DC         +  T  E        ++
Sbjct: 727 LYGFNEKRLLLADGLQKTDTLNCGFIKAITG-DCNYYMKHINKFFRTQFEFVVQAGLVVI 785

Query: 610 PN--KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK----------- 656
            N          D+ + ++ +V P       ++     +                     
Sbjct: 786 ANEKNMPKFDKTDENFLKKMVVCPLRSRFVTQEEFQEMRRSKNKMTNILIANDSSKLPFH 845

Query: 657 KW--FLKGVKAYISKGLDVDIPEVCLKAKEE----ERQGTDTYQAWIDDCCDIGENLWEE 710
           +W      +           IP+     K+         TD     +  C    EN +  
Sbjct: 846 EWRSATLDLLTEYYNKPISTIPDSMKAWKKRVCDMFFDYTDWMN--LHLCKSQNENEFVS 903

Query: 711 SHSL 714
           +  +
Sbjct: 904 ATEI 907


>gi|227487379|ref|ZP_03917695.1| bifunctional DNA primase/polymerase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092603|gb|EEI27915.1| bifunctional DNA primase/polymerase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 300

 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 68/234 (29%), Gaps = 19/234 (8%)

Query: 13  AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFGFVCGVGEQPLYAF 68
               G +++PL    KRP+  G        +E+      K P    G       +     
Sbjct: 56  YTEWGLEVLPLD--GKRPRIHGGVNAATTDTEQVAEWWSKWPYANIGIRV---PEGCLVV 110

Query: 69  DIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
           D+D ++   A+  +                   + + F +  +G    +T       +D+
Sbjct: 111 DVDPRNGGLADYRRMFPHGSCPHTGRTFTGSGGLHLYFTLPYDG----ETRGKYGTGIDL 166

Query: 129 LGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187
            G G++ VA    HP T + Y W   P     +  PL S   ++        +      +
Sbjct: 167 QGRGKFLVAPPSIHPTTGRAYAWW--PFVPPEKWAPLPSWCYLD--VYKPPRVAPREPLE 222

Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS-HDEWIPVVMAVHHET 240
            +                   E           +     H++ + +   + +  
Sbjct: 223 IRRYKAQHAKNPGAGLIRAVAEAQQGERNSLLYWAARCAHEDGLQIDAELTNAA 276


>gi|315121956|ref|YP_004062445.1| P4 family phage/plasmid primase [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|315122924|ref|YP_004063413.1| P4 family phage/plasmid primase [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495358|gb|ADR51957.1| P4 family phage/plasmid primase [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313496326|gb|ADR52925.1| P4 family phage/plasmid primase [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 68

 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/67 (82%), Positives = 59/67 (88%)

Query: 1  MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
          M VMQWK QAKQAI NGFK+IPLR GDKRP R GKWEEQLLS+E IDKLP+CGFG VCGV
Sbjct: 1  MSVMQWKPQAKQAIKNGFKIIPLRHGDKRPLRAGKWEEQLLSNEDIDKLPSCGFGLVCGV 60

Query: 61 GEQPLYA 67
          GEQP+YA
Sbjct: 61 GEQPIYA 67


>gi|332983388|ref|YP_004464829.1| bifunctional DNA primase/polymerase [Mahella australiensis 50-1
           BON]
 gi|332701066|gb|AEE98007.1| Bifunctional DNA primase/polymerase [Mahella australiensis 50-1
           BON]
          Length = 271

 Score = 83.4 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 33/187 (17%)

Query: 9   QAKQAIHNGFKLIPLR----------------LGDKRPQRLGKWEEQLLS----SEKIDK 48
            AK+    G+ +IPL                  G K P      +         +   +K
Sbjct: 11  YAKRL---GWMIIPLNNIEDGRCSCGNPHCQSPG-KHPLTQHGMKNATADILVIARWWEK 66

Query: 49  LPACGFGFVCGVGEQPLYAFDIDSKDEKTAN--TFKDTFEILHGTPIVRIGQKPKILIPF 106
            P    G +C      ++  D+D++     +       +  L  T +   G        F
Sbjct: 67  WPNANIGLIC--RANGIFVLDVDARHGGIDSLYQLIAEYGELPYTVVCNSG-GGGAHFYF 123

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           +     +      +  +  LDI   G Y +       + K Y W      F         
Sbjct: 124 KYPVNIV--ITDKQGFKSGLDIRSNG-YILLPPSDHISGKSYMWRKSCTPFSTP-IAEAP 179

Query: 167 EEDVEYL 173
           +  +  +
Sbjct: 180 QWLLNMI 186


>gi|332160965|ref|YP_004297542.1| Replication protein [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665195|gb|ADZ41839.1| Replication protein [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330862121|emb|CBX72285.1| hypothetical protein YEW_AK02220 [Yersinia enterocolitica W22703]
          Length = 721

 Score = 83.0 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/366 (13%), Positives = 97/366 (26%), Gaps = 36/366 (9%)

Query: 35  KWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG- 90
            W ++ ++  +I+K    P  G    C      + A D DS+ E+     ++    L G 
Sbjct: 66  NWTKRQINDSEIEKWSREPDYGI---CMRTGNGVIALDCDSESEEIQAIIQELTLELFGV 122

Query: 91  -TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT 149
             P        K L    +  E  K+    E   G +++L  G   V    HP +     
Sbjct: 123 IPPRRYRSNSNKCLYLLAVEGEYRKRIHRLEGNNGIIEMLADGNQAVVAGTHP-SGARIL 181

Query: 150 WTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN-R 208
           W         ++  +++ E +E L+    E    +   +      +  +           
Sbjct: 182 WDNGL----PDEPVVITPEQLESLWSALAERLPVVNSTEAGTSRLRDRSQATPNATDETA 237

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR------------GSSKGKEIARRWSKQ 256
           +         +   +G      P        T             G   G       S  
Sbjct: 238 DFLDANGWTLDFGASGERYIRCPFEDGHSGATDPTSTVYFPAGTAGFELGHFKCLHASCG 297

Query: 257 GSTYDE--ENFNYKWDTFDFEEIGDTAKKR-STFTSLFYHHGKLIPKGLLAS--RFSDAY 311
                +       + D FD  E+  +      +F        +   +    +  R     
Sbjct: 298 HRNDGDYLNKLGLRIDDFDIVEVEASEPAPLPSFKRDNKGRIEATIENTAKAVMRPDFCS 357

Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
            +  F  ++            W             +  +IT     F    +E + D+  
Sbjct: 358 IQIRFDQFRDEIMFAPDKGDQWQAFGDP-----DYSRLRITMEKRGFKPIGRELIRDVVL 412

Query: 372 EPEDNN 377
              D  
Sbjct: 413 LAADEQ 418


>gi|170751546|ref|YP_001757806.1| bifunctional DNA primase/polymerase [Methylobacterium radiotolerans
           JCM 2831]
 gi|170658068|gb|ACB27123.1| Bifunctional DNA primase/polymerase [Methylobacterium radiotolerans
           JCM 2831]
          Length = 289

 Score = 82.6 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 12/143 (8%)

Query: 50  PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI---GQKPKILIPF 106
           P    G   G         D+D +     +   +  E  HG                I F
Sbjct: 75  PQANIGMATGT----TVVLDVDPRHG--GDASLEALEAEHGPLPETTRALTGGGGQHILF 128

Query: 107 RMNK--EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
           R     E              LDI G G Y VA +    + + Y W+   H   V     
Sbjct: 129 RAPADVEIRNSAGDQGGLAPGLDIRGAGGYIVAPSSRHASGRYYAWSVDHHPDDVP-PAE 187

Query: 165 LSEEDVEYLFKFFQEITVPLVKD 187
           + +  V+ L +  +        +
Sbjct: 188 MPDWLVQALSRTGEGAAARDPSE 210


>gi|257052763|ref|YP_003130596.1| hypothetical protein Huta_1690 [Halorhabdus utahensis DSM 12940]
 gi|256691526|gb|ACV11863.1| conserved hypothetical protein [Halorhabdus utahensis DSM 12940]
          Length = 370

 Score = 82.6 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 79/297 (26%), Gaps = 39/297 (13%)

Query: 2   PVMQWKEQAKQAIHNGFKLIPLRLGD---KRPQRLGKWEEQLLSSEKIDKLPACGFGFVC 58
              QW    ++        +P+  G            W +   +  +ID+    G GFV 
Sbjct: 20  DRDQWICWREETRDGKATKVPIEPGSDEFASTTDAETWTDFETARREIDREDIDGVGFVF 79

Query: 59  GVGEQPLYAFDID---SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
                P    D+D       K   T +D  + L     V        +I          +
Sbjct: 80  -SEAGPFVGVDLDDCRDPGGKLDETARDIVQRLDSYTEVSPSGTGVHVIV-------KGE 131

Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
                + +  +++    ++F               T      + +    +  E V     
Sbjct: 132 LPDGRNRRRSVELYDTARFFTVTGERIDE------TPTRVAHRQDALAAVHREYVREEDS 185

Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG---SHDEWIPV 232
                  P          S +    ++ +   +  +A  S   ++ +NG    ++     
Sbjct: 186 NSNGANAPGSVSPSQRRSSGSEAQLDDAEVLEKARSAENSGKFDDLWNGRKAGYESHSEA 245

Query: 233 VMAV---------------HHETRGSSKGKEIARRWS-KQGSTYDEENFNYKWDTFD 273
            MA+                   R S   +E         GSTY E+       T D
Sbjct: 246 DMALCCLLAFWTGGDRSQIDRLFRQSGLMREKWDAVHYADGSTYGEKTIERAIGTVD 302


>gi|309780874|ref|ZP_07675614.1| regulatory prophage protein [Ralstonia sp. 5_7_47FAA]
 gi|308920340|gb|EFP65997.1| regulatory prophage protein [Ralstonia sp. 5_7_47FAA]
          Length = 670

 Score = 82.6 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 57/215 (26%), Gaps = 27/215 (12%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKI-DKL---PACGFGFVCGVGEQ 63
           + AK  +  G  ++P+    K P      +  L + E+I D     PA   G   G    
Sbjct: 32  QAAKFYVRCGHPVVPVHPYAKNPYIKDWEQHPLRTVEEIQDHWSAHPADNVGLFMG---D 88

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI-----GQKPKILIPFRMNKE------- 111
              A DID+KD K               P +R       Q       FR+          
Sbjct: 89  EYVALDIDTKDGKEGARTLAWLA--AKYPPIRSTLTQRSQSGGWHKIFRLTPAQRCRLRK 146

Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
               +         LDI+      V           Y W          +   + ++  E
Sbjct: 147 HTNVRLGPCHANSGLDIITGNAIIVVAPSTTHVG-AYKWKDL-----DAEILDMPDDLFE 200

Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206
            L         P       ++ +K      +    
Sbjct: 201 LLVSVEHAGREPANDPAPQLLGAKPPVVELDDHII 235


>gi|302536929|ref|ZP_07289271.1| predicted protein [Streptomyces sp. C]
 gi|302445824|gb|EFL17640.1| predicted protein [Streptomyces sp. C]
          Length = 336

 Score = 82.2 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 58/249 (23%), Gaps = 48/249 (19%)

Query: 15  HNGFKLIPLRLGDKRPQ----------------RLGKWEEQLLSSEKIDK-LP--ACGFG 55
             G+ + PLR GDKRP                      +   L +E+I           G
Sbjct: 46  ERGWPVFPLRPGDKRPAGHPERNCPRTGRCTDGHRTPEQRATLDTEQITACWQTAPYNVG 105

Query: 56  FVCGVGEQPLYAFDIDSKDEKTANTFKDTFE----------------ILHGTPIVRIGQK 99
              G     L   D+D   E       D                       T    +  +
Sbjct: 106 LATGPA--GLLVVDLDIPKEDDGPAPADWAGATDGLDVFAMICERAGERLPTETFTVRTR 163

Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
                 +       + + +       +D    G Y VA      T              +
Sbjct: 164 RGGQHLYFTAPAEKRLRGSAGRLGWKVDTRAWGGYVVAAGSTVGTGSY---------EII 214

Query: 160 EDTP--LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217
            D P   L     + L        VP+   +  I  +  +          +   A     
Sbjct: 215 HDAPPAALPTWLGDLLITPPAPAPVPVAVLRSRIGKADRYATAALNGEVAKVAAAATGAQ 274

Query: 218 GEEFYNGSH 226
               YN ++
Sbjct: 275 NTTLYNAAY 283


>gi|46198964|ref|YP_004631.1| hypothetical protein TTC0656 [Thermus thermophilus HB27]
 gi|46196588|gb|AAS81004.1| hypothetical conserved protein [Thermus thermophilus HB27]
          Length = 293

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 16/152 (10%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRL------GKWEEQLLSSEK-IDKLPACGFGFVCGV 60
           E A      G+ ++PLR G K P                 + E      P CG G + G 
Sbjct: 5   EHALSYAAQGYGVLPLRPGGKEPLGKLVPHGLKNASRDPATLEAWWRSCPRCGVGILPGP 64

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
               +   D D  D +     +     L   P  R  +  +    F    EG++   +  
Sbjct: 65  ---EVLVLDFD--DPEAWEGLRQEHPALEAAPRQRTPKGGR--HVFLRLPEGVRLSASV- 116

Query: 121 STQGHLDILGCGQ-YFVAYNIHPKTKKEYTWT 151
                +D+ G G+ Y VA     K  + YTW 
Sbjct: 117 RAIPGVDLRGMGRAYVVAAPTRLKDGRTYTWE 148


>gi|320450734|ref|YP_004202830.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus
           SA-01]
 gi|320150903|gb|ADW22281.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus
           SA-01]
          Length = 300

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 11  KQAIHNGFKLIPLRLGDKRP---QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63
           ++ +  G+ ++PL  G+KRP         +E       ++      P  G G +     +
Sbjct: 16  QRYVRLGYAVLPLVPGEKRPHFRLVPHGLKEASQDPATLEAWWRSCPEAGVGIL---APE 72

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
            +   D+D    +     +  F  L   P  +  +    +  F    EG+K   +     
Sbjct: 73  GVLVLDVD--QGEAWEALRRDFPALEAAPRQKTPKGG--VHLFLRLPEGVKLSASV-RAI 127

Query: 124 GHLDILGCGQ-YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
             +D+ G G+ Y VA     K  + Y W  P    + E  P + +
Sbjct: 128 PGVDLRGMGRAYVVAAPTRLKDGRTYAWEVPL--VRPEALPPVPD 170


>gi|254516156|ref|ZP_05128216.1| putative integrase [gamma proteobacterium NOR5-3]
 gi|219675878|gb|EED32244.1| putative integrase [gamma proteobacterium NOR5-3]
          Length = 489

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/447 (12%), Positives = 121/447 (27%), Gaps = 49/447 (10%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNS--KSPRFWFNTDYRRQNVEENSKAKSTAQ 407
           K        L    + V +L+++    N  S  +    + +T         +    +   
Sbjct: 50  KNVDLDPARLSDPDQCVAELNKQYAVVNSGSRVEIADEFNDTHPFLTVDAFHDLFANVMV 109

Query: 408 SLEAGSIFSITSDLL---DSSSRFLGEQDGILDLETGQKVKPTKELYITKS-TGTPFVEG 463
            ++   +  +T       D      G Q           V  +   Y      G      
Sbjct: 110 LVDGKRLKPVTKYWFTHPDRRQYLAGTQ-------FAPGVPASPNYYNLWKDFGVQADPL 162

Query: 464 EPSQEFLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNL 520
                FL+ V       +++  +Y    + +A+   G      I +    G+GK    + 
Sbjct: 163 GSCPLFLNHVESVVCDGNQDCYEYLLNWLALAVQNPGVLPGVAICLLSGQGTGKGLFASY 222

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIK 579
               FGN +    +   +                 L  + ++   E +   ++     +K
Sbjct: 223 AGKLFGNHFKHITDRGQLFGRFTD----------HLDDALLMFADEMHWSGNKEETGLLK 272

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP-DDAWWRRYIVIPFDKPIAN 638
            +   +  ++   YG             I  N+   V    DD   RR+ V+        
Sbjct: 273 VLITEETRSSERKYG-ATMPVKNCVHLIIASNEGWVVPAELDD---RRFFVLEVASKRVG 328

Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
            D  +  +L  +      +  L  +        +            ++       + W+ 
Sbjct: 329 -DYGYFDQLSAEMDSGGPEALLHKLLTRDISTFNPKDFPRTQARVSQQLASLANIERWLY 387

Query: 699 D-----CCDIGENL-------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           D        +   L             L  +Y  +R +         S    T  L + G
Sbjct: 388 DLADSTQLSLDTGLIDAPWPAKLPKDQLYAAYCRWRSESRIAG-PVESKAVFTQTLTKFG 446

Query: 747 FIGGIKREKIEKEWKSKRI---IKGLK 770
           F  G      +K      +   ++GL+
Sbjct: 447 FTTGKATCPGKKNRVQAYVLPSVEGLR 473


>gi|302545972|ref|ZP_07298314.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463590|gb|EFL26683.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 301

 Score = 81.9 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 56/234 (23%), Gaps = 45/234 (19%)

Query: 4   MQWKEQAKQAIHN-------GFKLIPLRLGDKRPQRLG---------------KWEEQLL 41
           M + E      ++       G+ + PLR   K P   G               KWEE+  
Sbjct: 1   MPYDEYGNPFRNSAFNAAGRGWHVFPLRPDSKTPALHGADRCPRKGDCASGHRKWEERAT 60

Query: 42  S-SEKIDKLPA---CGFGFVCGVGEQPLYAFDIDSKDEKTANTFK------DTFEILHGT 91
              E+I    +          G     L   D+D   + ++                 G 
Sbjct: 61  DKPEQIAAWWSRHWYNVAVATGP--SGLVVIDLDVPKDNSSADTPFGVETFKALCERAGQ 118

Query: 92  PI---VRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148
           P+    R+         +     G++   T       +D    G Y VA          Y
Sbjct: 119 PVPATYRVRTASSGWHLYFTAPPGVQLANTAGKLGPLIDTRAWGGYVVAAGSAI-NGGVY 177

Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202
                     V   PL  E     L    Q      V          T      
Sbjct: 178 ------ADSGVHVAPL-PEWLCARLTARPQPQGHVAVPSSSRASRYATVALKAE 224


>gi|78214079|ref|YP_382858.1| ATPase-like [Synechococcus sp. CC9605]
 gi|78198538|gb|ABB36303.1| ATPase-like [Synechococcus sp. CC9605]
          Length = 355

 Score = 81.5 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 77/226 (34%), Gaps = 24/226 (10%)

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           ++ L G +  I    +     +  +   +   + +     + N   ++      + + N 
Sbjct: 26  MLGLHGKKAAI-DYDSSGVVNDPGQFNSIVSNEPVQVWRKFSNKT-DARLGVVIWRLFND 83

Query: 613 HLFVRNPD--DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK- 669
              V +    +   RR I     + +  +D +  +KL  +      +W     +  I K 
Sbjct: 84  LPGVSDSGGVEGMQRRIITFSIGQSVRRKDPNLKEKLC-EELPGILQWAWSLSRDEIRKA 142

Query: 670 ----GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL--WEESHSLAKSYSEYRE 723
               G    I E  ++A+      +   + ++    ++  +      +  L + Y ++  
Sbjct: 143 FDAAGRIASISEASIEAQ---LNASPWLK-FL---IEVYPDGIQDIAAKKLFERYQQWCA 195

Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREK---IEKEWKSKRII 766
            E    R  ++     L LK+     G++  +   +++E K+    
Sbjct: 196 DEGR--RAVLNNTNFGLKLKKLTAPKGVEGSRLPIVKRETKTANRY 239


>gi|86750422|ref|YP_486918.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2]
 gi|86573450|gb|ABD08007.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2]
          Length = 1082

 Score = 81.5 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/258 (18%), Positives = 83/258 (32%), Gaps = 47/258 (18%)

Query: 7   KEQAKQAIHNGFKLIPLRLGD--------KRPQRL-------------GKWEEQLLSSEK 45
           ++   + I NG   +P+            K P R+              KWE       +
Sbjct: 5   RDVFDRLIANGCSPLPIGPRSADPRGPQGKSPARIRSNARGEPIWFHFKKWETFC--DRQ 62

Query: 46  IDKL--------PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIG 97
             +         P CG G  CG     L A DID  D       +    +L    + + G
Sbjct: 63  PHRFAFTAELRDPECGIGIACGF--NNLVAVDIDRDD-----LIEPLLAVLPPMVVAKRG 115

Query: 98  QKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTT--PP 154
           +  K L  F    E   K     +  G LD +  G   V    IHP T + Y WTT    
Sbjct: 116 R--KGLTVFYRGAEHWPKA----NYTGFLDFIARGAQTVLPPTIHPDTGQPYAWTTERTL 169

Query: 155 HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL 214
               VE+ PLL+ +  + +            +D+++        ++ +   ++    +  
Sbjct: 170 LDTPVEELPLLTADHRKAMEAVLAAHGWQPKEDRQARTAVTAARSSAHSAVSDYFALSDA 229

Query: 215 SCFGEEFYNGSHDEWIPV 232
                    G+    + +
Sbjct: 230 VNSAALANIGAWAPALNL 247


>gi|326381302|ref|ZP_08202996.1| pancreatic ribonuclease [Gordonia neofelifaecis NRRL B-59395]
 gi|326199549|gb|EGD56729.1| pancreatic ribonuclease [Gordonia neofelifaecis NRRL B-59395]
          Length = 362

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 85/292 (29%), Gaps = 42/292 (14%)

Query: 9   QAKQAIHNGF-KLIPLRLGDKRPQRLG------KWEEQLLSSEKIDKLP-ACGFGFVCGV 60
           +A+     G+  + PL    K P   G       W +   +       P  C +G     
Sbjct: 59  EAEAYAARGWLDVFPLPAARKAPPPTGLTGRRAPWTD---TERAALVFPSGCNYGMRT-- 113

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFE----ILHGTPIVRIGQK--PKILIPFRMNKEGIK 114
               L A D+D  D KT        E     L  T  V       P     +R+      
Sbjct: 114 -PAGLLAIDVDHYDGKTGAVTLADLEAKLGPLPSTWRVTSHGAANPSGQRWYRVPAVAEY 172

Query: 115 KKKTTESTQGHLD-ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK-----VEDTPLLSEE 168
           +    +     ++ I    +Y V           Y W +P          V   P L  +
Sbjct: 173 ESAAGKD----IEVIHRNHRYSVLPPSVHPKGGRYAWISPDGAITEDVPLVTRIPELPAK 228

Query: 169 DVEYLFKFFQEI--TVPLVKDKKSIIPS---KTWTNNNN-RQYTNREITAFLSCFGEEFY 222
            V+YL      +  + P    + +       + W ++       N +  AF+S     F 
Sbjct: 229 WVDYLTSTRPPVPGSTPAGIVRATAELDRMHRDWLSDTPIDGTVNAKTKAFISYIPGAFD 288

Query: 223 NGS--HDEWIPVVMAVHH----ETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
            G+  +D  + +          E  G+   + +         TY E     +
Sbjct: 289 RGTSRYDTMVRLFWEAAKRNAEEFDGARVHQGMVAALEAIAQTYRERVGEDR 340


>gi|328882523|emb|CCA55762.1| hypothetical protein SVEN_2476 [Streptomyces venezuelae ATCC 10712]
          Length = 321

 Score = 81.5 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 55/221 (24%), Gaps = 37/221 (16%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRL---------------GKWEEQLLSSEKI--DKL-- 49
            A  A   G+ + PLR  DKRP                     E++  +   +       
Sbjct: 27  HAVAAAERGWHVFPLRPHDKRPAGHSTARCPATGRCTAGHKTPEQRATTDVDLLAAAWTH 86

Query: 50  PACGFGFVCGVGEQPLYAFDIDS---KDEKTANTFKDTFEILHGTPIVRIGQKPK----- 101
                G   G     L   D+D+    DE+       TFE L       +    +     
Sbjct: 87  APYNIGIATGP--SGLLVVDLDTLKPTDEEGTPDGVTTFEALCERAGQAVPLTHRVRTAR 144

Query: 102 -ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
                +     G +   T      H+D  G G Y VA          Y          + 
Sbjct: 145 GGQHLYFTQPTGHRLGNTAGRLGKHIDTRGWGGYVVAPGS-TTADGAYEVLDSRPPAPL- 202

Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201
                    ++ L    Q      V      + +  +    
Sbjct: 203 -----PPWILDALTARPQPAQTATVPPAPLTVRASRYAAAA 238


>gi|85716250|ref|ZP_01047224.1| Hypothetical Membrane Spanning Protein [Nitrobacter sp. Nb-311A]
 gi|85696922|gb|EAQ34806.1| Hypothetical Membrane Spanning Protein [Nitrobacter sp. Nb-311A]
          Length = 853

 Score = 81.1 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 73/274 (26%), Gaps = 36/274 (13%)

Query: 15  HNGFKLIPLRLGDKRPQ--RLGKW--EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDI 70
             GF++ P+   DK+P      +W   +         + P    G       + L   D+
Sbjct: 52  QRGFRVFPVIQNDKKPYIKEWPEWATHDAPRIQAVWGRYPILNIGCF----NEDLILIDV 107

Query: 71  DSKDEKTANTFKDTFEIL-HGTPIVRIGQ--KPKILIPFRMNKEGIKKKKTTESTQ---G 124
           D+K  K         E L  G P+    +         +R   + +   KT  +      
Sbjct: 108 DTKAGKHGAKSLALLEALYEGLPLTYTQRSASGGYHFTYRAPPQIVVTIKTCSNKIVGFP 167

Query: 125 HLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
            +DI  G   Y V          EYT                 +  ++ L K        
Sbjct: 168 DIDIRAGRTGYIVGAGSSTAVG-EYTVEKDLP------IADAPQWLIDLLPKV------- 213

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET--- 240
             +       S+T     + +        +L     E   G+  +     +A H +    
Sbjct: 214 HDRRATRNGDSQTPLVELDTESAIARAADWLENNAPEAVQGAGGDAETYKVACHVKGFGI 273

Query: 241 ---RGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              +      +      K    +  +    K   
Sbjct: 274 SPEKCLELMLDHWNDI-KASPPWKPDELEEKVAN 306


>gi|320450759|ref|YP_004202855.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus
           SA-01]
 gi|320150928|gb|ADW22306.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus
           SA-01]
          Length = 330

 Score = 81.1 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 17/165 (10%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQR---LGKWEEQLLSSEKIDKL----PACGFGFVCGVG 61
            A++ +  G++ +PL  G+KRP         ++    S  ++      P CG G + G  
Sbjct: 12  FAQRYLSYGYRALPLFPGEKRPHPGLVPHGLKDATGDSATLEAWWRACPECGVGLLPGP- 70

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
              +   D+D+         K+    L   P  R  +   + +  R+  E + +   T  
Sbjct: 71  --EVLVLDVDAPGAW--ERLKEEHPALLEAPRARTPR-GGVHVYLRLPPEAVGRLTATTK 125

Query: 122 TQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
               +D+ G G+ Y VA      T   Y W       + E+ PL+
Sbjct: 126 ALPGVDLRGLGRSYLVAPPTTLPTG-AYAWEVAL--RRPEELPLV 167


>gi|160942659|ref|ZP_02089903.1| hypothetical protein FAEPRAM212_00132 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446074|gb|EDP23077.1| hypothetical protein FAEPRAM212_00132 [Faecalibacterium prausnitzii
           M21/2]
          Length = 169

 Score = 81.1 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-- 697
           D  F  +  ++       W L+G+   ++      I E  ++  E     +D    ++  
Sbjct: 2   DNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQFMQA 61

Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-NLKQKGFIG 749
                   +  E S  L ++Y+++ E  L      +  +  +   LK  G  G
Sbjct: 62  SAYVRFKPDTEERSTYLYRAYTKWCEDNLES---PVPQKKFSQFLLKNAGKYG 111


>gi|288922735|ref|ZP_06416906.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f]
 gi|288345912|gb|EFC80270.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f]
          Length = 350

 Score = 80.7 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 77/305 (25%), Gaps = 60/305 (19%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQR---------------LGKW-EEQLLSSEKIDKL---- 49
           A  A   G+ ++PL  G+KRP                    W +   L    I       
Sbjct: 49  ALDAAARGWYVLPLLPGEKRPASHPADRCPCTGPCRDGHRTWEQRATLDGATITAYWSAH 108

Query: 50  PACGFGFVCGVGEQPLYAFDIDSKDEK-------------------TANTFKDTFEILHG 90
           P  G G   G     L   D+D+                            +   E +  
Sbjct: 109 PTHGVGIATGP--SGLVVVDLDTPKPGDRPPSAVWAAEGVRTGVHALTVLARRVGESVTP 166

Query: 91  TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW 150
           T  VR G+       +     G++   T  S    +D    G   VA   +  + + YT 
Sbjct: 167 TYAVRTGRGG--WHLYYQAPAGVRLTNTGRSIGPWIDTRAWGGQVVAAG-NTVSGRPYTL 223

Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210
           T       +              + F    T PL   +   +       +          
Sbjct: 224 THDAPPAPLPP------------WLFQLIQTAPLPPQRPVRVAVGAGRRSAYITAAVNRQ 271

Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHH----ETRGSSKGKEIARRWSKQGSTYDEENFN 266
            A+++       N  +   + +   V      E   +   K+ A        T+      
Sbjct: 272 LAYITHATGGRNNAVYRSAVALGQLVAGGALTEADATDMLKQAAGGHVATDPTFTWAEVE 331

Query: 267 YKWDT 271
               +
Sbjct: 332 ATISS 336


>gi|290959765|ref|YP_003490947.1| hypothetical protein SCAB_53671 [Streptomyces scabiei 87.22]
 gi|260649291|emb|CBG72406.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 301

 Score = 80.7 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 66/250 (26%), Gaps = 50/250 (20%)

Query: 17  GFKLIPLRLGDKRPQRLGKW----------------EEQLLSSEKIDK-LPAC--GFGFV 57
           G+ +IPLR   K P   G+                 +   L   +I++   +     G  
Sbjct: 20  GWPVIPLRPRSKVPALHGERRCPHSGDCAGGHRTFEQRATLDPARIERCWSSGPFNVGIA 79

Query: 58  CGVGEQPLYAFDIDSKDE-------KTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRM 108
            G     L   D+D+            A  F+   E          RI         +  
Sbjct: 80  TGPA--GLLVVDLDTLKPTDEAGTPDGAANFQALCERAGHTVPATRRIRTPSGGEHLYFT 137

Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL--LS 166
              G++   TT +    +D    G   VA          YT         ++D P+  LS
Sbjct: 138 APSGVRFANTTGTLTPKVDTRAWGGQVVAPGSITPHG-PYTV--------LDDQPVANLS 188

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSI---------IPSKTWTNNNNRQYTNREITAFLSCF 217
           E   + L    +  T P++                                E+   +   
Sbjct: 189 EWLQKALTASQRRATAPILPTLARDADRYAAAVLNREVAAVAATGEGGRQAELLRAVRAV 248

Query: 218 GEEFYNGSHD 227
           G     G  D
Sbjct: 249 GRFVAWGDLD 258


>gi|308176189|ref|YP_003915595.1| bifunctional primase/DNA polymerase protein [Arthrobacter
           arilaitensis Re117]
 gi|307743652|emb|CBT74624.1| putative bifunctional primase/DNA polymerase protein [Arthrobacter
           arilaitensis Re117]
          Length = 301

 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 8/139 (5%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFGFVCGVGEQ 63
           + A+     G  + P   G+KRP     + +     ++     D+ P+       G    
Sbjct: 18  DAARSLASAGVPVFPCVPGEKRPLTRRGFHDAANDLDQVSAWWDRWPSANLAIPTGPAS- 76

Query: 64  PLYAFDIDSKDEKTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
            +   DID     +            L       +      L  +       +++ + ++
Sbjct: 77  GIDVVDIDIGSTGSGVPAFQRARREGLVHGWAALVRTPSGGLHVYF-PAGTSREQPSWQA 135

Query: 122 TQGHLDILGCGQYFVAYNI 140
              H+D  G G Y +A   
Sbjct: 136 PMAHIDFRGTGGYVLAPPS 154


>gi|269977396|ref|ZP_06184368.1| P4 family phage/plasmid primase [Mobiluncus mulieris 28-1]
 gi|269934312|gb|EEZ90874.1| P4 family phage/plasmid primase [Mobiluncus mulieris 28-1]
          Length = 283

 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 64/231 (27%), Gaps = 21/231 (9%)

Query: 10  AKQAIHNGFKLIPLRLGD----KRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVG 61
           A +    G+ + P +       K P   G ++        I +     P    G      
Sbjct: 20  AIELAGRGWPVFPCQEAGREHPKAPYVRGGFKSATTDLGMIRRWWKEYPNALIGLAL--- 76

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
            + L   D+D ++  +    ++    L  T  V  G+       +  +       +   +
Sbjct: 77  PKTLLVLDVDPRNGGSLEALQEKIGRLPETLRVESGRGDGGTHYYFRHPGIPLYGR---N 133

Query: 122 TQGHLDILGCG-QYFVAYNI-HPKTKKEYTWT-TPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
               +D+   G  Y +A    HP+T   Y W         V +   L+ +    +     
Sbjct: 134 LPEGVDLKEGGKGYVIAPPSLHPETGMPYKWIPGALSSLTVGNVKRLAAKPAPSVASRPT 193

Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229
                   DK   +     T    ++       A          N   + W
Sbjct: 194 RFIGYKNTDKWRGVLRVVETAAEGQRNRTLFWAACRMAEN----NADQNAW 240


>gi|254504973|ref|ZP_05117124.1| hypothetical protein SADFL11_5012 [Labrenzia alexandrii DFL-11]
 gi|222441044|gb|EEE47723.1| hypothetical protein SADFL11_5012 [Labrenzia alexandrii DFL-11]
          Length = 1485

 Score = 80.3 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 73/270 (27%), Gaps = 29/270 (10%)

Query: 34  GKWEEQLLSSEKIDKLPA-------CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE 86
             W+  + +   +++L            G +       L   D+D+      +  +D   
Sbjct: 57  DGWQN-VTAETAVERLSDNLRNPYPHNIGVLL---NDGLVCVDVDTDHPGIVDAVEDWAR 112

Query: 87  ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES-TQGHLDILGCGQYFVAYNIHPKTK 145
            L G  + ++G   K +  F   ++               +DIL  G+  +       + 
Sbjct: 113 SLGGDYVAKVG--GKGVSVFVRLEDPDLHLPGKLHVGDHLIDILASGRQTIVPPSMHTSG 170

Query: 146 KEYTWTTP--PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
           K Y W          ++D P L+E   + L            K        +++  +   
Sbjct: 171 KRYRWVGDVALEDSSLDDLPSLNETAWQALLDALGVHGDLAGKGSALG-SGQSYEKDGFS 229

Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
           +Y     T                    V     +  R  +         +++ ST    
Sbjct: 230 KYLEDLATESFDHMARWMRPLELARIQRVG----NGFRAVNT--------TRKSSTNRPT 277

Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293
               +W       + D A        L+  
Sbjct: 278 AQRTQWLEISPGRVVDKATGVYGIAKLYQA 307


>gi|307825540|ref|ZP_07655758.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
 gi|307733426|gb|EFO04285.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
          Length = 803

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 101/328 (30%), Gaps = 41/328 (12%)

Query: 446 PTKELYITKSTGTPFVEGEP------SQEFLDLVSGYFESE----EVMDYFTRCVGMAL- 494
                     T   +               LDL+      E     V ++  R +   L 
Sbjct: 444 FDPTEKDKNITCNVWDGFPTTPIDGNCDRLLDLLMYMCADEKNSDAVYNWVLRWLAYPLQ 503

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
             G K +  I I G  G+GK+   ++I   +G    I  + S I        G     L 
Sbjct: 504 HPGAKMKTTIVIHGPQGTGKNLFFDVILGIYGKYGRII-DQSAIEDKFNDCFGGKLFMLA 562

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
                   +++ ++     N  K+K +  GD +         Y E+      F+   +  
Sbjct: 563 D------EVVARSDLYHIKN--KLKGLITGDRIRINPKNMAAYEEANHVNLVFLSNERMP 614

Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK----G 670
            V + DD   RR+ VI +        A        +  LE      + +  Y+       
Sbjct: 615 VVLDQDD---RRHQVI-WT------PAKLGPDFYKEIALEIDNGGAEALHYYLVNLPLGD 664

Query: 671 LDVDIPEVCLKAKEEERQGT-DTYQAWIDDCCDIG----ENLWEESHSLAKSYSEYREQE 725
            +     +   AK++ +  + D+   + D+           +   S  +   Y+ +  +E
Sbjct: 665 FNPHTKPLMTAAKQDLQDLSKDSIIRFYDEWNTKEISGVPPIPALSEDIYTLYTHWCRRE 724

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKR 753
               R     + +    K+ G     KR
Sbjct: 725 G--VRAAPKNKAIDAIAKRPGVKKERKR 750


>gi|226363434|ref|YP_002781216.1| hypothetical protein ROP_40240 [Rhodococcus opacus B4]
 gi|226241923|dbj|BAH52271.1| hypothetical protein [Rhodococcus opacus B4]
          Length = 904

 Score = 79.9 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 25/212 (11%)

Query: 3   VMQWKEQAKQAIHNGFK-LIPLR-LGDK--RPQRLGKWEEQLLSSEKIDKL----PACGF 54
              + + A +  + G++ ++P +  G K   P+    +E    S   +       PA   
Sbjct: 11  ASPYADGATELWNAGWRGVLPTKRPGTKWPIPEGYTGYEGVYPSYADLMAWTEDKPASNI 70

Query: 55  GFVCGVGEQPLYAFDIDSKDEKTAN----TFKDTFEILHGTPIVRIGQKPKILIPFRMNK 110
                   + +   D+D+ D+K          + +  L  T I          I F    
Sbjct: 71  ALRM---PKNIIGIDVDAYDKKQGAVTFARALELWGPLPDTWISTSRNDGVSGIRFFTIP 127

Query: 111 EGIKKKKTTE-STQGHLDI--LGCGQYFVAYNIHPKTKKEYTWTTPPHRF-------KVE 160
           EG   +   E      ++I         VA ++HP T   Y W  P           +  
Sbjct: 128 EGTALRTIIELDGTKDIEIVQYFHRYAIVAPSVHPLTSSTYRWVMPDGTDAPETVVPEPH 187

Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
           + P L +  +  L     +   P+        
Sbjct: 188 ELPTLPDRWLTALEAPIVDTLQPVDVQAALRD 219


>gi|62184576|ref|YP_220481.1| hypothetical protein pFP11.26 [Streptomyces sp. F11]
 gi|61661460|gb|AAX51330.1| unknown [Streptomyces sp. F11]
          Length = 301

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 74/288 (25%), Gaps = 33/288 (11%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-LPAC--GFGFVCGVGEQPL 65
           A +    G  + PL +G K P R   WEE+     E I++         G  CG     L
Sbjct: 5   ALRYAERGMFVHPLLVGAKEP-RWTNWEERATRDPEVIERTWGRAPFNIGVACGP--SGL 61

Query: 66  YAFDIDSKDEKTANTFKDTFE---------------ILHGTPIVRIGQKPKILIPFRMNK 110
            A D+D   E   +   +  +                +  T  VR     +  + +R   
Sbjct: 62  VALDLDVPHEGEVSGSPEIVDGVTMLDSLAARTPGARVTPTLTVRTPSGGR-HLVYRAPA 120

Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170
            G+  + T  +    LD    G Y V      +    Y              P      +
Sbjct: 121 -GVAVRNTARTLGFCLDTRAAGGYVVGIGSVVE-GAAY-VLEDGSPTDPAVLPGWLLTLI 177

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
               K  +    P   D  + +   T      +++    + +           G  +  +
Sbjct: 178 TAAPKPPKAGGAPRRADVVARLRELTRQGTREQRWAAGILRSECGELAAMRQEGGRNNRL 237

Query: 231 PVVM-------AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
            +         A        ++        S                +
Sbjct: 238 NLAAYRAGQLVAAGLVDHDVAEEHLTEAAQSAGLGVDTPREIEKTIRS 285


>gi|183984415|ref|YP_001852706.1| hypothetical protein MMAR_4444 [Mycobacterium marinum M]
 gi|183177741|gb|ACC42851.1| hypothetical protein MMAR_4444 [Mycobacterium marinum M]
          Length = 400

 Score = 79.9 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 72/302 (23%), Gaps = 40/302 (13%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRL--GKWEEQLLSS-----EKIDKLPACGFGFVCG 59
            + A+     G  +IP++ G K P       W  +         E   + P  G     G
Sbjct: 18  ADAAETYAKAGLHVIPVKPGTKNPGSYLGRGWPARATDDLEVVREWWRRWPDAGIAVHVG 77

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE-----GIK 114
                L   D+D  +    + +    E              +    +R+ +      G+ 
Sbjct: 78  GC--GLVVVDVDVPENVPDSLWV-LLESAAFRSTTTDADSKRGYYFYRLRRGELFGCGLG 134

Query: 115 KKKTTESTQGHLDILGCGQYFVA-YNIHPKTKKEYTWTTPPHRFKVE-------DTPLLS 166
           + K  +  +   ++   G   V     HP+    Y          +        + P   
Sbjct: 135 RLKPPKGKRWG-EVKCYGGAVVLGPTEHPREGGRYATAPGGTLSYLPAEIADGLNAPDTD 193

Query: 167 EED----------VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216
             +          V+   +   +   P            + TN +     +    A    
Sbjct: 194 RAEAVTPGELAARVKAFLETNIDNDAPHALAPICRSFDPSPTNRHP-TMWDALCWAMREA 252

Query: 217 FGEEFYNGS-----HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
               F            W   +   +         + +    +   +    E    +   
Sbjct: 253 KAGRFPARDAAIALRARWTDAIGGQYRGGDPDEFDRMLRDAVAVADADGTREELAARAHR 312

Query: 272 FD 273
           F 
Sbjct: 313 FT 314


>gi|329936166|ref|ZP_08285959.1| hypothetical protein SGM_1451 [Streptomyces griseoaurantiacus M045]
 gi|329304276|gb|EGG48156.1| hypothetical protein SGM_1451 [Streptomyces griseoaurantiacus M045]
          Length = 300

 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 54/257 (21%), Gaps = 44/257 (17%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSS-----EKIDKL 49
           A  A   G+ + PLR G KRP   G               KWE++  +          + 
Sbjct: 8   ALDAAARGWHVFPLRPGTKRPALHGETACPGTGPCERGHRKWEQRATTDPGRIRATWSRA 67

Query: 50  PACGFGFVCGVGEQPLYAFDIDSK----------DEKTANTFKDTFEILHGTPI---VRI 96
           P    G   G     L   D+D            D               G  +    R 
Sbjct: 68  P-YNVGIATGP--SGLVVVDLDLPKNDDKGKGSSDAPCGAASFGALCERAGHAVPDTYRT 124

Query: 97  GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156
                    +     GI+   +  +    +D    G Y VA          Y        
Sbjct: 125 RTASGGTHLYFTAPPGIRLGNSAGTVAPLVDTRAWGGYVVAAGSTTPAG-AYEALCGSVA 183

Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216
             +          +  +    Q               S   T   N              
Sbjct: 184 APL------PGWLLS-ILTPAQRPAERASVAVLVQSRSYADTALANESRNVASAVTGQRE 236

Query: 217 FGEEFYNGSHDEWIPVV 233
                   +   +I   
Sbjct: 237 ATLFRAARALGRFIAWG 253


>gi|222476074|ref|YP_002564595.1| hypothetical protein Hlac_3173 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454445|gb|ACM58709.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 417

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 83/298 (27%), Gaps = 43/298 (14%)

Query: 5   QWKEQAKQAIHNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVG 61
           QW    ++        +P+  G            W+    + E  +   A G GFV    
Sbjct: 21  QWVCWREETRDGKPTKVPVTPGTGGFASSTDPETWDAFETALEYTETEHADGVGFVF-TD 79

Query: 62  EQPLYAFDI-DSKDEKTA---NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
           + P+   D+ D +D +T    +  +D  + L     V        ++          +  
Sbjct: 80  DDPIVGVDLDDCRDPETGDVDDAAQDIIKRLDSYTEVSPSGTGYHVLI-------TGELP 132

Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
              + +G +++    ++F     H         T      + +    +  E V+   +  
Sbjct: 133 EGRNRRGSVELYDTARFFTVTGDHVDE------TLGRVARRQDALTAIHREYVQDTERDT 186

Query: 178 QEITVP---LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG---SHDEWIP 231
              + P         +   +    +  +     +   A      E  +NG    +D    
Sbjct: 187 ASESEPGNGTDDQSTATGTADVDVDLEDEDLLEKARNASNGEKFERLWNGNTVGYDSQSE 246

Query: 232 VVMAV---------------HHETRGSSKGKEIARRWS-KQGSTYDEENFNYKWDTFD 273
             MA+                   R S   +E         GSTY E+       T  
Sbjct: 247 ADMALCCLLAFWTGGDRTQMKQLFRQSGLLREKWDEVHYADGSTYGEKTIERAIATTS 304


>gi|295096871|emb|CBK85961.1| Predicted P-loop ATPase and inactivated derivatives [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 728

 Score = 79.2 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 65/197 (32%), Gaps = 15/197 (7%)

Query: 33  LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89
           + +W E +++     +    P  G     G       A D DS+DE      + T   L 
Sbjct: 63  IAQWTEHVVTEHDFARWSKEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119

Query: 90  G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
           G   P        K L    +  +  K+        G +++L  GQ FVA   H  +   
Sbjct: 120 GELPPRRWRANSNKCLYLLAVEGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178

Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
             W         ++ P+++ + +E L++   E     V  +      +  +         
Sbjct: 179 IEWDGGL----PDEPPVITADQLETLWQRLAEQLPVSVTTEAGSTKMRDRSTFTP--GAT 232

Query: 208 REITAFLSCFGEEFYNG 224
            E   +L   G    +G
Sbjct: 233 DETAEYLDANGWTLLDG 249


>gi|330857717|gb|AEC46815.1| primase [Xanthomonas vesicatoria]
          Length = 803

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/376 (15%), Positives = 105/376 (27%), Gaps = 34/376 (9%)

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
              +           +    +          S +    +   +D +          +   
Sbjct: 401 TVFDHQEHMLVALGDMRDACVRRELHRAWLESPQRAIVRVQEVDFDPSGCKPG---ITCN 457

Query: 454 KSTGTPFVEGE-PSQEFLDLVSGYFESEE----VMDYFTRCVGMAL-LGGNKAQRFIHIR 507
              G P V  E    + L L+     +E     + D+  + +   L   G K +  I I 
Sbjct: 458 LFAGWPTVPQEGTCDKLLQLLWHMCGNEANQRMLYDWVIKWLAYPLQHPGAKMKSTIVIH 517

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G  G+GK+   +     FG    +  + S +       A +    L         +++ T
Sbjct: 518 GPQGTGKNMFFDEYMKLFGEYGRV-LDQSALEDKFNDWASRKLFLLAD------EVVART 570

Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
                 N  K+K +  GD +         Y E   +   F+       V   DD   RR+
Sbjct: 571 EVYHLKN--KLKALITGDRIRINPKNIQAYEEDNHANLVFLSNEAMPVVLEEDD---RRH 625

Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAKK-WFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
            VI     +  R               A   + L+      + G +         AK E 
Sbjct: 626 AVIWTPDKLPGRVLPGGAGEIRAGGTAALHHYLLQVDLGDFTNGTNPP----MTAAKAEL 681

Query: 687 RQ-GTDTYQAWIDDCCDIG-ENLW---EESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
              G D+ Q ++D+        L      S    + Y  +         K   +      
Sbjct: 682 INLGQDSPQRFLDELYGQDIPGLKPRPAPSKEWYEVYKVWC---GREGVKPAPSPKFINA 738

Query: 742 LKQKGFIGGIKREKIE 757
           L +K  I    R +  
Sbjct: 739 LVRKRGITHPDRARKR 754


>gi|326331498|ref|ZP_08197788.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae
           bacterium Broad-1]
 gi|325950754|gb|EGD42804.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae
           bacterium Broad-1]
          Length = 304

 Score = 79.2 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 58/212 (27%), Gaps = 11/212 (5%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
           K+ A         + P   G K P  L  +++  +S  ++ +     P    G   G   
Sbjct: 26  KDAAVALATTRIPVFPCVPGGKEPLTLRGFKDASISIRQVQRWWQRHPDANIGIPTGAAS 85

Query: 63  QPLYAFDIDSKDEKTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             L A D+D   ++T     D      L       +      L  +    +   + ++  
Sbjct: 86  -GLAAVDVDVHGDRTGFAAFDRAGRAGLVDRWSWLVRTPSGGLHAYFRPIDP--EMRSWS 142

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
               HLD  G G Y +A           +               L  + +       + +
Sbjct: 143 LPGQHLDFRGDGGYVIAPPSRISNSDATSRAYQVIAVAQHQARPLDSDALRRFLDPPRAV 202

Query: 181 TVPLVKDKKSIIPSKT--WTNNNNRQYTNREI 210
             P         P +   W         N+ +
Sbjct: 203 RPPAALTLGDARPDRLAHWVATRPEGARNQSL 234


>gi|289803544|ref|ZP_06534173.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 367

 Score = 78.8 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 47/139 (33%), Gaps = 9/139 (6%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
            R +G ++G+LD  TG      K  ++       F            +  F   +     
Sbjct: 221 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 280

Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
              E  D     + M L      Q F+ + G GGSGKS L  +     G     +A    
Sbjct: 281 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 340

Query: 538 IMQNRPPEAGKANPSLIRL 556
           +   R   A     SLIRL
Sbjct: 341 LESPRERAA-LIGFSLIRL 358


>gi|90962626|ref|YP_536542.1| hypothetical protein LSL_1657 [Lactobacillus phage Sal3]
 gi|90821820|gb|ABE00459.1| Hypothetical protein, phage associated [Lactobacillus phage Sal3]
          Length = 256

 Score = 78.4 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 31/227 (13%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC--GFGFVCGVGEQPL 65
           +Q  + +  G  + P+    K+P +   + +       I +             + +  L
Sbjct: 5   DQVIEMVQRGLYVYPIVPNGKQPIKDYSYLKATQDIALIKRWFMDEPNINIGLNLAKSNL 64

Query: 66  YAFDIDSKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
              DID+ +       +          +  V   +   +   +R +      +KT     
Sbjct: 65  IIVDIDNHNNDLQAPLQSLSNLGYNLPSDYVERTKSGGLHFYYRCSDGIPATRKTKFID- 123

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
             +D+L    + V            T     +   ++D P      ++ L        +P
Sbjct: 124 -GVDLLSD--FVVTSPS--------TNYKILNGATLDDIPQTPNWIIKAL----DNRAMP 168

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
             K + +  P + +       Y   EI   +         G+ + WI
Sbjct: 169 TDKMQDNPTPYRRYYTG----YLIDEIVNGVDA-------GNRNNWI 204


>gi|295396334|ref|ZP_06806501.1| N- superfamily bifunctional DNA primase/polymerase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294970829|gb|EFG46737.1| N- superfamily bifunctional DNA primase/polymerase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 208

 Score = 78.4 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 49/167 (29%), Gaps = 10/167 (5%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65
           A++   +G  + P    +KRP     + +     E+++      P    G   G     +
Sbjct: 25  ARELAQSGVPVFPCVPYEKRPLTPRGFHDASADPEQVEMWWRHTPLASIGIPTGQPS-GM 83

Query: 66  YAFDIDSKDEKTANTFKDTFEI---LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
            A D+D                   + G  ++       +   +        ++++ ++ 
Sbjct: 84  VAVDVDQHGRVDGYQAIRRARQAGLVAGWEMLVRTPTGGMHAYY--PAAPGLEQRSWQAA 141

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED 169
           +  +D  G G Y +                         +P+ S+  
Sbjct: 142 RAGVDFRGDGGYVIVPPSLRSISGATVSYRVESVIPGPASPIDSDAL 188


>gi|170744933|ref|YP_001773588.1| hypothetical protein M446_6918 [Methylobacterium sp. 4-46]
 gi|168199207|gb|ACA21154.1| hypothetical protein M446_6918 [Methylobacterium sp. 4-46]
          Length = 681

 Score = 78.4 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/374 (13%), Positives = 115/374 (30%), Gaps = 43/374 (11%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCV 490
           +G++  E  +  +   +L + +        G         +         E   Y    +
Sbjct: 293 NGLI-FEPEKGREVDGQLNLWRGFAIQPQPG-DWTRLRRHIREVLAAGDAEADRYIIAWL 350

Query: 491 GMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
              L   G +A+  +  +G  G+GK TL N +    G      ++A  +           
Sbjct: 351 AWLLQNPGRRAEVALVFKGTKGTGKGTLGNALCRILGQHATHISDAEHLSGRFN------ 404

Query: 550 NPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
                 L  +  +   E     D+     +K++     +       +     P      +
Sbjct: 405 ----AHLRDACFLFADEAYWPGDKSAEGSLKRLITEPDLFIEGKGRDG-VTVPNRLHVLM 459

Query: 609 VPNKHLFVR-NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
             N+   V    D+   RR+ V      +  +D  +   L  +         L  + A+ 
Sbjct: 460 ASNEDWIVPAGADE---RRFAVF-AVSDVHKQDPEWFGPLYDEMEAGGLAAMLHDLLAFD 515

Query: 668 SKGLDVDIPEVCLKA--KEEERQGTDTYQAWIDDCCDI----GENLWEESHSLAKSYSEY 721
            KG      +V   A   E++ +       W  +  +     G +  E + +++  + E 
Sbjct: 516 LKGWHPR--QVVRTAALVEQQERSLRPLDEWWVELLETGILEGADPREPNRAVSTGWDEE 573

Query: 722 REQELNYDRKR----------ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK---G 768
                N   KR          +S +  T++ +Q G     K     ++   ++       
Sbjct: 574 VPAGFNTRSKRRRGLFDQAREMSPKLKTVSDRQLGSYLKSKGCSNHRKVMRRQGWTFPPL 633

Query: 769 LKLKPAFESVDDNS 782
            +L+  +E++    
Sbjct: 634 AQLRAEWEALFPGW 647


>gi|299820270|gb|ADJ54280.1| hypothetical phage/plasmid primase [archaeon enrichment culture
           clone 1(2010)]
          Length = 575

 Score = 78.4 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 106/327 (32%), Gaps = 39/327 (11%)

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           +F       F+ +E  +YF   VG  L   N         G   SGKST++ L+      
Sbjct: 262 KFYQFFRKQFDDKEW-EYFIDLVGALLKPSNSKLIGYI-DGPTDSGKSTILYLLTRPIKK 319

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG-GDC 586
                +  S                L  L G  I+I+      D++ A  +  + G  D 
Sbjct: 320 MVATISSISIKQG--------YVFGLEMLYGKHILIM--PERIDKLPAELLNLLLGKRDQ 369

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD----DAWWRRYIVIPFDKPIANRDAS 642
           +              +        N    +   D    DA   R   I   KPI      
Sbjct: 370 ILIERKNK-PAVMMESLKLAIFAGNGPPKIEYLDPDALDALLNRLSYIR-IKPIQGPKIE 427

Query: 643 FAQKLETK-YTLEAKKWFLKGV----KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
              +L +    +    W   G     + +  +   +D     ++++EE      T + ++
Sbjct: 428 DIDRLISDIDIMSFLMWC--GWNLRQREWQIRKRGIDEIWEVIQSREE------TVEKFL 479

Query: 698 D-DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
           + D   I  +   +   L  +Y ++ ++ L       S       L +KG   G+     
Sbjct: 480 ESDWVKIDPDGRIKGTVLYNAYVKFVKRVLKMT--PTSLTNFYNELDEKGSKYGVSTYIR 537

Query: 757 EKEWKSKRIIKGLKLKPAFESVDDNSN 783
           EK       ++GL+L  A +  D +S 
Sbjct: 538 EK----VTWVRGLRLTEASDVTDKDSQ 560


>gi|213163899|ref|YP_002321451.1| putative primase [Stenotrophomonas phage S1]
 gi|212295210|gb|ACJ24725.1| gp1 [Stenotrophomonas phage S1]
          Length = 804

 Score = 78.0 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 112/338 (33%), Gaps = 42/338 (12%)

Query: 448 KELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEE----VMDYFTRCVGMAL-LGGNKAQ 501
             +      G P V  E      L L+     +E     + D+  + +   L   G K +
Sbjct: 452 PGVTCNLFAGWPTVPQEGNCDRLLQLLWHMCGNEANQKALYDWVVKWLAYPLQHPGAKMK 511

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
             I I G  G+GK+   +     +G    +  + + +       A +    L        
Sbjct: 512 STIVIHGPQGTGKNMFFDEYMKLYGEYGRV-LDQAALEDKFNDWASRKLFLLAD------ 564

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
            +++ T      N  K+K +  GD +         Y E   +   F+       V   DD
Sbjct: 565 EVVARTEVYHLKN--KLKALITGDRIRINPKNIQAYEEDNHANLVFLSNEAMPVVLEEDD 622

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK----GLDVDIPE 677
              RR+ VI         D   +Q+  ++   + +      +  Y+ +    G       
Sbjct: 623 ---RRHAVI------WTPDK-LSQEFYSEVLSDIRNGATAALHHYLLQVDLTGFTNGTNP 672

Query: 678 VCLKAKEEERQ-GTDTYQAWIDDCCDIGEN------LWEESHSLAKSYSEYREQELNYDR 730
              +AKEE      D+ Q ++D+    G++      +   S    + Y  +  +E     
Sbjct: 673 PMTQAKEELIGLSQDSPQRFLDEL--YGDDIPGLKPMPALSKEWYEVYKAWCAREGMP-- 728

Query: 731 KRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
           +   +      L +K     +  ++  K ++ ++ + G
Sbjct: 729 RPAPSPKFINALVRKR--QILHPDRARKRYQIEQTVNG 764


>gi|296139150|ref|YP_003646393.1| Bifunctional DNA primase/polymerase [Tsukamurella paurometabola DSM
           20162]
 gi|296027284|gb|ADG78054.1| Bifunctional DNA primase/polymerase [Tsukamurella paurometabola DSM
           20162]
          Length = 808

 Score = 77.6 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 75/251 (29%), Gaps = 29/251 (11%)

Query: 2   PVMQWKEQAKQAIHNGFK-LIPLRLGDKRPQRLG--KWEEQLLSSEKIDKLPAC------ 52
           P   +   A+  +  G++ ++PL  G K P              + +I            
Sbjct: 11  PADGYAAWAQAYLDAGWRGVLPLPEGMKLPPPTSYTGQGTPDPDAAQIAAWARSPRFERG 70

Query: 53  GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP-----IVRIGQKPKILIPFR 107
                       + A D+D+ D K A       E   G P                  +R
Sbjct: 71  NLALRL---PPNVIALDVDNHDGKPAAETIAALERAAGVPLPQTWTSTSRSDGSCHAFYR 127

Query: 108 MNKEGIKKK--KTTESTQGHLDILGCG-QYFVAYNI-HPKTKKE-YTWTTP-------PH 155
           ++     +    + +     +D+L  G +Y + +   +P      Y W  P         
Sbjct: 128 VSLLAGDRGWPGSLKQFGPGVDLLQTGHRYSLVWPSTNPANDGAHYRWYRPDGSPAAVGE 187

Query: 156 RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLS 215
             + ED   L +  ++ +            + + + +  +   + + R   +  +   ++
Sbjct: 188 IPRPEDLTELPQSFIDAITAPRSISGEKATEAEATALLDRLAAHPDYRAPMSERMAEAVA 247

Query: 216 CFGEEFYNGSH 226
              E+F    H
Sbjct: 248 DAIEQFPADGH 258


>gi|22788811|ref|NP_690523.1| Orf104 [Heliothis zea virus 1]
 gi|22671571|gb|AAN04398.1|AF451898_103 Orf104 [Heliothis zea virus 1]
          Length = 1585

 Score = 77.6 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/249 (18%), Positives = 83/249 (33%), Gaps = 29/249 (11%)

Query: 472  LVSGYFESEE--VMDYFTRCVGMALLGGNKAQRFI-HIRGVGGSGKSTLMNLIKYAFGNQ 528
             +S  F+  E  + DYF       L    K Q+ +    G    GK+TL+NL      + 
Sbjct: 1160 FLSETFKYNEHVLRDYFMYTC--CLYQPCKVQKHMNIYYGSPRCGKTTLLNLHTEMCNDD 1217

Query: 529  YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CM 587
             +           +  ++   +P+ I L    I II+E +    I+   +K MTG D   
Sbjct: 1218 AIYRTSKEY----KDVKSSGPSPNAIHLKTKYISIINELS---SISNNLLKTMTGDDGTN 1270

Query: 588  TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDAS--- 642
              R  +   +    +        N   ++  PD+A   R I+  F+    +  +D +   
Sbjct: 1271 DDRTLFSTKFPMLSSCTFLVAACNHLPYMTMPDEAIRDRIIIFLFEMKATDVVKDPNCML 1330

Query: 643  -FAQKLETKYTLEA------KKWFLKGVKAYISKGLDVDIPEVCLKAKE----EERQGTD 691
             FA+    K  +E           L            +  P+   +       E     +
Sbjct: 1331 TFAENYTYKEQMEVSKMAPLLSNLLYVYFRQHRNDYGIVSPKCINRVSTKLLYEFMLKNN 1390

Query: 692  TYQAWIDDC 700
                 +D C
Sbjct: 1391 YLYKVLDMC 1399


>gi|327541459|gb|EGF27997.1| Bifunctional DNA primase/polymerase [Rhodopirellula baltica WH47]
          Length = 339

 Score = 77.6 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 90/299 (30%), Gaps = 34/299 (11%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRL-GDKRPQ--RLGKWEEQLLSSEKIDKLP--ACGFG 55
           M   Q  + A+  +  G  +IPL+  G K P      ++ ++  + +++ +      G G
Sbjct: 23  MASSQ-LDLARAYVSAGVSVIPLKTDGTKAPALASWNEYRKRFAADDELRRWFRRPAGIG 81

Query: 56  FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEI-LHGTPIVRIGQKPKILIPFRMNK-EGI 113
            VCGV    L   D D    +T   +       L     +         +P+R     G 
Sbjct: 82  LVCGVQSNGLEVLDFDEDPVETMLEWAKILPEGLLDRLTIVATGGGGFHVPYRCESVTGN 141

Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNI---HPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170
            K          ++  G G Y V          + K Y W T      +   P +S ++ 
Sbjct: 142 TKIAMAAEGGVLIESRGDGGYVVGVGSATRVHSSGKSY-WQTAGE--PLPSLPTVSADER 198

Query: 171 EYL----FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQ-----YTNREITAFLSCFGEEF 221
           + +     +  +         +K     +  T  ++         + +    L   G   
Sbjct: 199 KLMWMAAAELDERPDAADEFVRKRRAQLRPLTKPDSDTPWGAFDESADWREILEPAGWTT 258

Query: 222 YNGSHDEWIPVV-----MAVHHETRGSSKGKEIARRWSKQGSTYD-EENFNYKWDTFDF 274
            NG H  W          AV       ++   +   +S        E   +  W  F  
Sbjct: 259 TNGKH--WTRAGKTFGTSAVLGTANNGNEILTV---FSTNAGELSVEGTGHRNWGKFAA 312


>gi|254454539|ref|ZP_05067976.1| Bifunctional DNA primase/polymerase, N-terminal domain family
           [Octadecabacter antarcticus 238]
 gi|198268945|gb|EDY93215.1| Bifunctional DNA primase/polymerase, N-terminal domain family
           [Octadecabacter antarcticus 238]
          Length = 219

 Score = 77.6 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 26/225 (11%)

Query: 39  QLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTA-NTFKDTFEILHGTPI 93
           Q     +ID+     P    G   G     +   DID KD+K       D          
Sbjct: 14  QSRDHRQIDRWWDKHPDALPGLPTGAAS-GVAVLDIDRKDDKDGFTALSDAGLDRFTDGR 72

Query: 94  VRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP 153
             +         +  + +G+  + +T      +D+L  G Y +A      T+  Y  ++ 
Sbjct: 73  YVVDTPSGGQHIYFAHIDGL--RCSTSKIAEGVDVLADGGYVIAPGAE-TTQGTYPTSSN 129

Query: 154 PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213
                V+  P      +  L    +  T P   +                    +     
Sbjct: 130 SEDMTVKPFPKT----LRKLVGQRKATTKPKSSEPAQA------------WKIVKAALKS 173

Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258
           +   G+   + S D W+ ++ A+HHE+ GS+KG+++A  WS    
Sbjct: 174 IPNNGKG-ADVSRDWWVKMLAALHHESSGSAKGRKLAHTWSGTCQ 217


>gi|239905658|ref|YP_002952397.1| hypothetical protein DMR_10200 [Desulfovibrio magneticus RS-1]
 gi|239795522|dbj|BAH74511.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 677

 Score = 77.2 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 26/193 (13%)

Query: 12  QAIHNGFKLIPLR-----LGD-----KRP--QRLGKW--EEQLLSSEKIDKLPACGFGFV 57
           + + + F LIPL       G      KRP      KW  +++  S +      A   G  
Sbjct: 28  EFLSDSFSLIPLVGGFPAPGQSSSEFKRPTEANWTKWCVQKRQFSRDDFSPERA---GVA 84

Query: 58  CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
           CG     +   D+D   +       +  E L  T  V+ G   +    +        ++ 
Sbjct: 85  CGPAS-GVLVLDVDDMGKFREWLAANVGEELPATLTVKTGGIGERYHFYFQYPN-DGQRY 142

Query: 118 TTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY-LFK 175
              S +   DI G G   +     HP+T+K Y     P      +     +    Y L++
Sbjct: 143 PNRSVKDVFDIRGVGGEVLCPGSLHPETRKPYIIVESPE-----NLAPAPDWLRNYSLYR 197

Query: 176 FFQEITVPLVKDK 188
             + +      D 
Sbjct: 198 TIKPLAPVSTSDA 210


>gi|239928908|ref|ZP_04685861.1| hypothetical protein SghaA1_11855 [Streptomyces ghanaensis ATCC
           14672]
 gi|291437235|ref|ZP_06576625.1| hypothetical protein SSFG_02335 [Streptomyces ghanaensis ATCC
           14672]
 gi|291340130|gb|EFE67086.1| hypothetical protein SSFG_02335 [Streptomyces ghanaensis ATCC
           14672]
          Length = 296

 Score = 77.2 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 48/202 (23%), Gaps = 30/202 (14%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLG---------------KWEEQLL-SSEKID-KLPAC 52
           A  A   G+ + PLR G KRP   G               KWE++     ++I       
Sbjct: 9   ALDAAARGWHVFPLRPGTKRPALHGEKTCTRTGPCARGHRKWEQRATVDPDRIRAAWSQA 68

Query: 53  --GFGFVCGVGEQPLYAFDIDSK------DEKTANTFKDTFEILHGTPIVRIGQK---PK 101
               G   G     L   D+D        D               G  +    +      
Sbjct: 69  PFNVGIATGP--SGLLVVDLDVPKDKGSSDAPGGAATFAALCERAGHAVPTTYRTRTASG 126

Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
               +     G++   T  +    +D    G Y VA                        
Sbjct: 127 GTHLYFTAPNGVRLPNTAGTVADSVDTRAWGGYVVAAGSTTPAGPYEALCGSAAAVLPAW 186

Query: 162 TPLLSEEDVEYLFKFFQEITVP 183
              + +         F+   V 
Sbjct: 187 LQSILQPAPARPVGPFRLPAVD 208


>gi|330467066|ref|YP_004404809.1| bifunctional DNA primase/polymerase [Verrucosispora maris
           AB-18-032]
 gi|328810037|gb|AEB44209.1| bifunctional DNA primase/polymerase [Verrucosispora maris
           AB-18-032]
          Length = 304

 Score = 77.2 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 48/179 (26%), Gaps = 30/179 (16%)

Query: 10  AKQAIHNGFKLIPLRLGDKRP-------------------------QRLGKWEEQLLSSE 44
           A   +  G+ +  L    KRP                                +   ++ 
Sbjct: 11  ALDYVARGWPVFML-GRTKRPVANCPDCATTTAGHDREACPCLTCHGFYAATTDPDRAAA 69

Query: 45  KIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILI 104
            +  +P        G     +   D+D       +      + L       +     + +
Sbjct: 70  IVRAVPTGQLALRTGAAS-GVVVVDVDPAHGGRDSMNALIADGLLPPTAYVVTGSGGLHL 128

Query: 105 PFRMNKEGI--KKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVE 160
            +R   + +   + K  +     +D+   G Y V     HP+T + Y W       ++ 
Sbjct: 129 YYRHPGQPVPCSQGKPGQGLGPGIDVKADGGYVVLPPSVHPRTGRAYRWAPDRAMEEMP 187


>gi|238063625|ref|ZP_04608334.1| bifunctional DNA primase/polymerase [Micromonospora sp. ATCC 39149]
 gi|237885436|gb|EEP74264.1| bifunctional DNA primase/polymerase [Micromonospora sp. ATCC 39149]
          Length = 291

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 9/128 (7%)

Query: 46  IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
           ID +P        G         D+D +     +      E L       +     + + 
Sbjct: 68  IDAVPRGQLALRTGAAS-GTVVVDVDPRHGGHHSMAALITEGLLPRTRYAVTGSNGLHLY 126

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPL 164
           +R     +  +         +DI   G Y V     H +T + Y W          D   
Sbjct: 127 YRHPGTSVISRPMPGRY--GIDIKADGGYVVLPPSRHQRTGRPYRWADGE-----HDLTE 179

Query: 165 LSEEDVEY 172
           ++   ++ 
Sbjct: 180 MAPALLDA 187


>gi|251793969|ref|YP_003008701.1| phage DNA primase [Aggregatibacter aphrophilus NJ8700]
 gi|247535368|gb|ACS98614.1| phage DNA primase [Aggregatibacter aphrophilus NJ8700]
          Length = 239

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 76/245 (31%), Gaps = 22/245 (8%)

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
           M   +++  E +     +   +K ++ GD +     + + +          IV N+    
Sbjct: 1   MNKTLILCPEQSRYGG-DGGGLKSISTGDLVNIDPKHKSKFKAIIP-AIVLIVNNEPTRF 58

Query: 617 RNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
              +    RR ++  FDK +  + R+     K+E           ++  K  +     + 
Sbjct: 59  TERNGGIERRRVIFHFDKVVQESKREPHLMDKIE-AEAGGIIYKLIQAFKNPLDAKKALI 117

Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGE-------NLWE--ESHSLAKSYSEYREQE 725
             +   +A E  +  +D    +        E       N         L  +Y  + E  
Sbjct: 118 QQQESAEALEI-KMNSDHLAVFCSYFLTSQESNGLGIGNAKTGLPRTHLYPAYLVFTEAN 176

Query: 726 LNYDRKRISTRTVTLNLK----QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
               +  ++    +  L+    Q        R++I    +  R I  +  K  F+   + 
Sbjct: 177 --NIQNALTLNNFSEALRQGLAQHKNKYPYARKRITSGMEKGRYITNVHFK-DFDEFYNE 233

Query: 782 SNIID 786
               +
Sbjct: 234 YIKSN 238


>gi|239916596|ref|YP_002956154.1| hypothetical protein Mlut_00280 [Micrococcus luteus NCTC 2665]
 gi|281414938|ref|ZP_06246680.1| hypothetical protein MlutN2_07018 [Micrococcus luteus NCTC 2665]
 gi|239837803|gb|ACS29600.1| Hypothetical protein Mlut_00280 [Micrococcus luteus NCTC 2665]
          Length = 314

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 37/131 (28%), Gaps = 10/131 (7%)

Query: 17  GFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDS 72
           G  + P   G KRP     + +      +++      P        G     +   D+D 
Sbjct: 32  GVPVFPCVPGGKRPLTEHGFHDATTDPGQVEAWWRTHPDANLAVPTGAAS-GMVVVDVDV 90

Query: 73  KDEKTANTFKDTFEI---LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDIL 129
                     +       + G   +       +   +       + +++ ++ +  +D  
Sbjct: 91  HAPTDGYEAFERAHRAGLVSGWAFLVSTPSGGMHAYY--PATPDRAQRSWQAARAGVDFR 148

Query: 130 GCGQYFVAYNI 140
           G G Y +    
Sbjct: 149 GGGGYILLPPS 159


>gi|119869598|ref|YP_939550.1| hypothetical protein Mkms_3566 [Mycobacterium sp. KMS]
 gi|119695687|gb|ABL92760.1| conserved hypothetical protein [Mycobacterium sp. KMS]
          Length = 717

 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 26/235 (11%)

Query: 17  GFK-LIPLRLGDK--RPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFD 69
           G++ +IP+   DK   P     +    ++ E +       P    G         +   D
Sbjct: 42  GWRGVIPVDPRDKGGVPAGFTGYGGIDVTPENMAWFAKSKPGHNIGLRL---PDGVIGID 98

Query: 70  IDSKDEK-TANTFKDTFEILHGTPI--VRIGQKPK--ILIPFRMNKEGI--KKKKTTEST 122
           +D+   K  A+TF +        P       +      +  +R+          +  +  
Sbjct: 99  VDAYGPKKGADTFAEAQGRWGALPPSYRSTSRDDGISGIRLYRVPAGTKLETIIEFKDLD 158

Query: 123 QGHLDILG-CGQYF-VAYNIHPKTKKEYTWTTPPH------RFKVEDTPLLSEEDVEYL- 173
              ++I+    ++     +IH KT + Y W +             +D P L    V  L 
Sbjct: 159 IRDIEIVQRHHRHVQCWPSIHDKTGQRYRWVSELDGSAMDTPPAPDDLPNLPAAWVAALR 218

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228
            +     T     +    + +     + + +       A   C+G   ++ +   
Sbjct: 219 AESGSNGTPLNGAEAPVDVQTALTEGDASPRVAELLARAIGDCYGGSRFDHTRGN 273


>gi|331694991|ref|YP_004331230.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949680|gb|AEA23377.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 315

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 38/180 (21%), Gaps = 39/180 (21%)

Query: 16  NGFKLIPLRLGDKRPQRLG-----------------KWEEQLLSS-----EKIDKLPACG 53
            G+ + PL    KRP   G                  WE++  +             A  
Sbjct: 21  RGWPVFPLHPATKRPALHGHAHCPRTGPCAGADGHLGWEQRATTDPDRIHTAWAAGRAFN 80

Query: 54  FGFVCGVGEQPLYAFDIDS----------KDEKTANTFKDTFEILHGTPIVRIG---QKP 100
            G   G     L   D D+                           G             
Sbjct: 81  IGLATGPA--GLVVIDCDTDTDGAPRAQWAGAGGGLDVLHRLADQAGALPATFTVATPSG 138

Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
                +R      + + T       +D    G Y VA          YT T      ++ 
Sbjct: 139 GTHFYYRAPA-CDELRNTAGLLGWKIDSRAHGGYVVAAGSTTPAG-AYTITDARDPVELP 196


>gi|145354411|ref|XP_001421479.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581716|gb|ABO99772.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 689

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 90/742 (12%), Positives = 191/742 (25%), Gaps = 113/742 (15%)

Query: 54  FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF---EILHGTPIVRIGQKPKILIPFRMNK 110
           +G + G     +   D D    K      +     ++      +   +       F  ++
Sbjct: 2   YGVLTGRP-NRVLVIDWDCYGGKCEFELTEEMLTRKVGGEGAYIVKTRSGGYHTYFAWDE 60

Query: 111 EGIKKKKTTESTQGHLDILGCGQYFV---AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
           E     K T   +G +DI   G Y V   A          Y          + + P +  
Sbjct: 61  ERFGDWKGTVGIEGFVDIRTTGNYVVGADAPG--------YELLRG----DINNLPPMPN 108

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
           +   +L             +                 +T   +T  L   G    +    
Sbjct: 109 DLYSFLDGKVGHKVERADTECS---------------FTQASVTPLLEEMGFTGIH---- 149

Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
            W+    +   E       +            + E N     + F   E+G         
Sbjct: 150 -WLSGATSYDFECDQCRPQRGTTVGQCPCCGGFHEGNGRGGGNHFYVAEVGLGV------ 202

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
                +HG   P+                  ++ G  +     K   +  +     +   
Sbjct: 203 -LTVKNHGNCKPRQF---------------RFEVGCLVTGITEKEQNEIKEGTSAGYIEV 246

Query: 348 LDKITASIMNFLVS---MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
             +    +   L       +  +  + +    ++ +   R+   +      V    K   
Sbjct: 247 RREFEKHVAKILTKDLFCDDSCYGTTGDITKYSEAALVRRYRELSFVDENGVLRKGKKNG 306

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
             +         +  + LD   +     +   +L  G  V+            +   +  
Sbjct: 307 FIEKWLDDDNKRVYDN-LDVVPK--NCSNKTYNLWRGYPVEG---------IPSELGKEG 354

Query: 465 PSQEFLDLVSGYFE-SEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
             + FL+L+      SE  ++Y +            K    +  RGV G+GK T ++L+ 
Sbjct: 355 DVKPFLELLLVLCGGSENALEYASNWFACLFQRPEEKPITSLVFRGVQGTGKGTFLHLLH 414

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
              G              +   +    + ++I      + +        ++    +K M 
Sbjct: 415 ALMGK-------TFHETADPKKDIFGTHANMIEGK-KCLALNEADECIMKMYRKLLKSML 466

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI-PFDKPIANRDA 641
                T    +   Y         F   + +       D   RR++V+ P    + ++  
Sbjct: 467 TDTSFTINPKHVQLYVIMNLVGFLFFSNDDYPVFLEMSD---RRFVVMEPLLTHLNDQTG 523

Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK--AKEEE----RQGTDTYQA 695
              +  E           +         GLD+   +        +      R     +  
Sbjct: 524 FLKEFREVYIRDPRNLRAIYDHLM----GLDLSTFDYVKDRPTTDAYSEMKRGCMPKFTR 579

Query: 696 WIDDCCDIG-ENLWE----ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
           W + C  +     W      +  +   Y  +        R + S   V   LK   F   
Sbjct: 580 WFEHCVTVEFPEKWVGNKIRNSDIFIEYQTWLPA---AARGQDSATKVGNKLKD--FFKK 634

Query: 751 IKREKIEK---EWKSKRIIKGL 769
            K  ++       +  R  KG+
Sbjct: 635 EKGHRVPMQEDHLRQGRDEKGV 656


>gi|194430133|ref|ZP_03062636.1| replication protein [Escherichia coli B171]
 gi|194411843|gb|EDX28162.1| replication protein [Escherichia coli B171]
 gi|323159199|gb|EFZ45189.1| virulence-associated protein E family protein [Escherichia coli
           E128010]
          Length = 642

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 80/593 (13%), Positives = 145/593 (24%), Gaps = 116/593 (19%)

Query: 63  QPLYAFDIDSKDEKTANTFKDTFEILHG--TPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
               A D DS+DE      + T   L G   P        K L    ++ +  K+     
Sbjct: 5   HGWLALDCDSEDEDIQADIRKTLVQLLGELPPRRWRANSNKCLYLLAVDGDFCKRIHRLA 64

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
              G +++L  GQ FVA   H  +     W         ++ P ++ E +E L++   E 
Sbjct: 65  GDMGIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQ 119

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTN-REITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239
               V  +      +  +        +  E          +  NG    +I       H 
Sbjct: 120 LPVSVTTEAGNTKMRDRSAFTPGATDDTAEYLDANGWTLLDGANGER--YIRCPFEDGHS 177

Query: 240 TRGSSK----------GKE--IARRWSKQGSTYDEENFNYKW----DTFD--FEEIGDTA 281
           + G             G E    +      +  D+ +F        D F+          
Sbjct: 178 SGGDPTSTAYFPAGTAGFEQGHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEP 237

Query: 282 KKRSTFTSLFYHHGKLIPKGLLAS--RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN 339
                F    +   +        +  R         F  ++      +A +  W      
Sbjct: 238 LPLPAFERDKWGRIEATISNAAKAVVRPDFVDIDIRFDQFRDEIMFASAGSGQWRAFTD- 296

Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
                     +IT     F    +E + D+     D                        
Sbjct: 297 ----ADYARLRITMEKRGFKPVGRELIRDVVLLAAD------------------------ 328

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
                  +     +I  +     D   R                           +  TP
Sbjct: 329 -------EQPFDSAITWLNGLEWDGVPRIECF-----------------YHTHFGTADTP 364

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
           +        +                     G  L  G KA     + G  G GKS+ + 
Sbjct: 365 YTRAVSMYMWT-----------------ALAGRVLEPGIKADMVPILVGPQGCGKSSGVE 407

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKI 578
            +          + + +   +    E       L R + G  +  I E    +      I
Sbjct: 408 AL----------SPDPAFFTEISFAEKDD---DLARKMRGRLVAEIGELRGLNTKELESI 454

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
           K             Y    ++ P         N+  F+ +      RR++ + 
Sbjct: 455 KAFVTRTHENWIPKYREFATQFPRRLVFVGTTNEDEFLADKTG--NRRWLPVE 505


>gi|29566306|ref|NP_817873.1| gp22 [Mycobacterium phage Corndog]
 gi|29425031|gb|AAN01954.1| gp22 [Mycobacterium phage Corndog]
          Length = 786

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 17/185 (9%)

Query: 6   WKEQAKQAIHNGFK-LIPLRLGDKRPQRLG--KWEEQLLSSEKIDKLPA-CGFGFVCGVG 61
           + + A+     G++ ++PL+   K P   G   ++  + S   I +       G +C   
Sbjct: 9   YGDAAQVYWDKGWRGVLPLKRETKWPPPSGFTGYDGAVPSYPDILQWSELYPDGNLCLRL 68

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK------ILIPFRMNKEGI-- 113
              +   D+D+   KT        E   G          +       L  FR+    +  
Sbjct: 69  PDGVVGIDVDAYGAKTGAAALAEAERRWGPLPDGPQSTSRLDDPVSGLRLFRVPPGTLLE 128

Query: 114 KKKKTTESTQGHLDILG-CGQYFVAYNIHPKTKKEYTWTTPPHRF----KVEDTPLLSEE 168
                 E + G ++++    +Y V +       + Y W     +     +++D P L   
Sbjct: 129 TIIVFRELSIGDIEVIQPHHRYAVCWPSIHPEGRAYWWRNSQGQTIGIPELDDIPELPPS 188

Query: 169 DVEYL 173
            +E L
Sbjct: 189 WLEGL 193


>gi|108800482|ref|YP_640679.1| hypothetical protein Mmcs_3516 [Mycobacterium sp. MCS]
 gi|119869621|ref|YP_939573.1| hypothetical protein Mkms_3589 [Mycobacterium sp. KMS]
 gi|108770901|gb|ABG09623.1| hypothetical protein Mmcs_3516 [Mycobacterium sp. MCS]
 gi|119695710|gb|ABL92783.1| conserved hypothetical protein [Mycobacterium sp. KMS]
          Length = 718

 Score = 76.5 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 20/226 (8%)

Query: 17  GFK-LIPLRLGDK--RPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFD 69
           G++ +IP+   DK   P     +    ++ E +       P    G         +   D
Sbjct: 42  GWRGVIPVDPRDKGGIPAGFTGYGGIDVTPENMAWFAKSKPGHNIGLRL---PDGVIGID 98

Query: 70  IDSKDEK-TANTFKDTFEILHGTPI--VRIGQKPK--ILIPFRMNKEGI--KKKKTTEST 122
           +D+   K  A+TF +        P       +      +  +R+          +  +  
Sbjct: 99  VDAYGPKKGADTFAEAQGRWGALPPSYRSTSRDDGISGIRLYRVPAGTKLETIIEFKDLD 158

Query: 123 QGHLDILG-CGQYF-VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
              ++I+    ++     +IH KT + Y W +      V DTP   E+  +    +   +
Sbjct: 159 IRDIEIVQRHHRHVQCWPSIHDKTGQRYRWVSELDGS-VMDTPPAPEDLPDLPAAWVAAL 217

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
            V       + +       +     T  + +  ++          +
Sbjct: 218 RVEESGSNGTPLNGAEAPVDVQTALTEGDASPRVAELLARAIGDCY 263


>gi|218884436|ref|YP_002428818.1| primase [Desulfurococcus kamchatkensis 1221n]
 gi|218766052|gb|ACL11451.1| primase [Desulfurococcus kamchatkensis 1221n]
          Length = 598

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/409 (12%), Positives = 118/409 (28%), Gaps = 73/409 (17%)

Query: 425 SSRFLGEQDGILDLETG--------QKVKPTKELYITKSTGTP---------------FV 461
              F+  ++ + D                P  E+ +      P               ++
Sbjct: 192 DYNFIVFENKLFDWRVFLKTENLVEAVKDPDPEIVVMHRIPNPIDLDAWRAVRPGLQQYI 251

Query: 462 EGEPSQEFLDLVSGYFE-------------------SEEVMDYFTRCVGMALLGGN---- 498
             +   + + L+                         E  + +  + VG  +L G     
Sbjct: 252 PPKNCSDLVALLRQLAPATYSYLYSLAYVAGASQDFIESRICFLVQMVGRMMLPGYRVNG 311

Query: 499 ----KAQRFIHIRGVGGSGKSTLMNLIKY--AFGNQYVINAEASDIMQNRPPEAGKANPS 552
               K +    + G   +GKST +         G +     + + +    P +  +    
Sbjct: 312 VIVEKLKNVFALLGKTNTGKSTFLQDYTGDVVLGKENYRITDLARLTSLDPEDRLR---E 368

Query: 553 LIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
              L G+ +VI  +      ++  + I+ ++GGD + AR  Y ++Y E   SF   I  N
Sbjct: 369 FHDLRGTLMVIHPDIGRKSRVSDWSIIRDVSGGDRIKARGLYKDSY-EYYPSFKIAISSN 427

Query: 612 KHLFVRNPDDAWW---RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
               +    +A     +R+ V         +  +   +        A   +L G    + 
Sbjct: 428 DPPPIGEEGEALKALLQRFKVFETWNTFTGK--TLDIEPLEAEVSRAVIAYLYGAYLVLK 485

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG---ENLWEESHSLAKSYSEYREQE 725
            G            ++   + ++    +I +  + G         +  L    S++ +  
Sbjct: 486 AGW---ACTGVSDIEDAWLRYSEPIYRYIIEMIERGVLVRGGEINTGDLYSLLSKFIKCR 542

Query: 726 LNYDRKRISTRTVTLN-----LKQKGFIGGIKREKIEKEWKSKRIIKGL 769
                +       +       + +K      K     K  +   +I GL
Sbjct: 543 SRESEEEDYEEEGSALPPQDVVTKKLKKWSAKLGIAVKHKERGNVIIGL 591


>gi|158421602|ref|YP_001527829.1| bifunctional DNA primase/polymerase [Deinococcus geothermalis DSM
           11300]
 gi|158342845|gb|ABW35131.1| Bifunctional DNA primase/polymerase [Deinococcus geothermalis DSM
           11300]
          Length = 402

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 80/287 (27%), Gaps = 21/287 (7%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQ 63
           +   +  I  G K       +K        ++   + E++         G G V G    
Sbjct: 32  RPHGQALISTGHKTSGTDGREK--GAWQALQQTPATREEVLTWLRPGWRGLGLVTGSVS- 88

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN--KEGIKKKKTTES 121
            +   D+D  +      F +    L G   VR  +   +    R         + +T + 
Sbjct: 89  GIVVIDVDQSEGV--ARFTEWG--LLGRAHVRT-RSGGLHWYLRHPGWPVRTVQSQTNKR 143

Query: 122 TQG--HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
            +    +D+ G G Y V                P    +  D P L   +V+ L      
Sbjct: 144 LEWIRGIDVRGDGGYVVIPPTRFGRVGY----EPLRDHRDLDDPSLLPFEVQVLLGLHAA 199

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239
            + P  +   S  P+       + +  ++E+              +   +        + 
Sbjct: 200 PSAPGPRAAVSPAPASGPWVARDGRTLDQELLYRALELAHTGGRRNESGFWLACQLRDNG 259

Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
            R     + + R  S+  +T  +        TF+          R  
Sbjct: 260 FREGDAEEVLRRYVSQVPATNSKGERED--YTFEEARHSLGQAYRRE 304


>gi|297566004|ref|YP_003684976.1| Bifunctional DNA primase/polymerase [Meiothermus silvanus DSM 9946]
 gi|296850453|gb|ADH63468.1| Bifunctional DNA primase/polymerase [Meiothermus silvanus DSM 9946]
          Length = 1006

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 13/148 (8%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQR---LGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
           A +    G+ ++PL  G+KRP          +     E + +     P  G G +     
Sbjct: 13  ALEYAGMGYPVLPLLPGEKRPHGRLVPSGLRDASTDPEVLRRWWQAAPGAGVGIL---PP 69

Query: 63  QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
               A D D      A      +  L   P  R  +   + +  R+    +    ++   
Sbjct: 70  AETLALDCDVPSAWGA--LLAEYPELGEAPRQRTPR-GGVHVFLRLPAGLVGSLTSSARK 126

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTW 150
              +D+ G G+ ++A          Y W
Sbjct: 127 LPGVDLRGLGKAYLAAAPTTLPNGAYVW 154


>gi|33864892|ref|NP_896451.1| hypothetical protein SYNW0356 [Synechococcus sp. WH 8102]
 gi|33638576|emb|CAE06871.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 656

 Score = 76.1 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 19/236 (8%)

Query: 2   PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLG--------KWEEQLLSSEKIDKLPAC- 52
           PV  W+++    +  G  LIP   G+K    +          W+    + ++I  +    
Sbjct: 3   PVSNWRQKLLPQLT-GLPLIPCGAGEKFKAPIDPSTGFGAKGWQHMSFTPDEIAAMGPKV 61

Query: 53  -GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIV-RIGQKPKILIPFRMNK 110
              G   G     +  FDID      +   +   E    T +V R     +  + FR+ K
Sbjct: 62  LCVGTRLGPDAGGIVCFDIDGLSA-ISELIRMGIEHQPVTWMVGRNTDSNRYKLFFRVPK 120

Query: 111 EGIKKKKTT----ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
           E  +               ++I       +    H ++  EY WT   +  ++   P   
Sbjct: 121 ERWEHLPGKCEVKADGNEKVEIFWSTGQCIVAGEHRQSGGEYVWT-QRNPERIAPIPDDW 179

Query: 167 EED-VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
                + + K     +   V D    IP             + +    L  +G+ +
Sbjct: 180 WALWQKAMAKTENRRSHKQVGDWHDAIPCPICGRTEPDCRQSADGKVILCHYGKRW 235


>gi|291297141|ref|YP_003508539.1| Bifunctional DNA primase/polymerase [Meiothermus ruber DSM 1279]
 gi|290472100|gb|ADD29519.1| Bifunctional DNA primase/polymerase [Meiothermus ruber DSM 1279]
          Length = 1002

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 15/151 (9%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQR---LGKWEEQLLSSEKIDKL----PACGFGFVCGV 60
           + A +    G+ ++PL  G+KRP                E + +     P  G G +   
Sbjct: 6   QAALEYARLGYAVLPLLPGEKRPHSRLAPNGLTNATPDPEVLRRWWQAVPTAGVGIL--- 62

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             + +   D D    +     +  +  L   P  R  +   + +  ++ K  I    TT 
Sbjct: 63  PPEQVLVLDFD--APEVWEQLRAEYPELATAPRQRSPR-GGVHVFLKLPKSLIGSLTTTA 119

Query: 121 STQGHLDILGCGQ-YFVAYNIHPKTKKEYTW 150
                LD+ G G+ Y  A          Y+W
Sbjct: 120 RKMPGLDLRGLGKAYLAAAPTELPNGG-YSW 149


>gi|187251854|ref|YP_001876336.1| bifunctional DNA primase/polymerase [Elusimicrobium minutum Pei191]
 gi|186972014|gb|ACC98999.1| Bifunctional DNA primase/polymerase [Elusimicrobium minutum Pei191]
          Length = 255

 Score = 76.1 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 67/230 (29%), Gaps = 36/230 (15%)

Query: 14  IHNGFKLIPLR-LGDKR--------------PQRLGKWEEQLLSSEKIDKL-----PACG 53
           +  GFK+ P+    +K+              P   G  +    +  +I         +C 
Sbjct: 14  LRRGFKVFPVWYPKEKKCACFNASCNCPAKHPMFKGGHKIASSNISQIKNWTTSIKESCN 73

Query: 54  FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
           +    G     +   DID + +   +        L  T  V  G        F++  +  
Sbjct: 74  WAVATGKPSN-IVVVDIDFRKDGDKSIAP---YNLPSTYTVSTGN--GFHYYFKLPMQY- 126

Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
           +   +  +    +D    G Y +       +   Y      +   + D P      +E +
Sbjct: 127 QYLASKINLLQGVDFKANGGYVIIPPSIHISGAAYK---MHNDITIADIP---ANLLEVI 180

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE-ITAFLSCFGEEFY 222
            +  +         +++    +        +   +  +T +LS   E+  
Sbjct: 181 LRQVKNNIFREG--ERNSQLFRIGVGFAYNRSKEKSRLTKYLSVVNEDRC 228


>gi|224178113|ref|YP_002600956.1| putative phage associated DNA primase [Pyramimonas parkeae]
 gi|224178119|ref|YP_002600974.1| putative phage associated DNA primase [Pyramimonas parkeae]
 gi|215882780|gb|ACJ71153.1| putative phage associated DNA primase [Pyramimonas parkeae]
 gi|215882786|gb|ACJ71159.1| putative phage associated DNA primase [Pyramimonas parkeae]
          Length = 454

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/374 (12%), Positives = 108/374 (28%), Gaps = 42/374 (11%)

Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
                 +D    +     ++L +   T     +    ++    +     S+ +  +F + 
Sbjct: 16  NFPIEFIDPLDREMYLHRRKLNLKTITD---GKNIDLEKLQKELQKIALSDWLQGFF-KT 71

Query: 490 VGM---------ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           +             +      R I     G   ++      + A G   +++        
Sbjct: 72  LTYNLAEQSPLNIFILRTFMNRIIFAAKEGHFYQTITWLSGRSATGKSSIVSICKFLSEG 131

Query: 541 NRPPEAGKAN-PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
           +       +N  +   L+G ++++I++ ++        ++ + G D ++      N    
Sbjct: 132 SYLELGKDSNQFTASALVGKKLLLITDPSKITPNQIDILRTVAGRDTLSYENKNMNGTYT 191

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWR----RYIVIPFDKPIANRDASFAQKLETKYTLEA 655
                   IV N++    +     W+    R  +I  +      + S   +    +    
Sbjct: 192 FVPYCQILIVTNRNPRDYDN---IWQLEELRTKIIDIEYLHPLPEVSNFNQYLESFKDHF 248

Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCCDI--------G 704
             W     + Y+   L     +     +              ++I+DC  I         
Sbjct: 249 HVWATFCPREYL---LQTTRSQAIQNTRSSNEHVSTEISPLHSFIEDCIYICDPAYECNE 305

Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF-------IGGIKREKIE 757
           + L+     L  +Y  + E++        S R       Q          I   + +  E
Sbjct: 306 KELFVTKKDLLIAYENWIEKQGQEASFDGSARKFFQKNIQNALLTTYNIAIKNYRPKVTE 365

Query: 758 KEWKSKRIIKGLKL 771
           K        KG+KL
Sbjct: 366 KNEVRPLAWKGIKL 379


>gi|134097719|ref|YP_001103380.1| hypothetical protein SACE_1124 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006321|ref|ZP_06564294.1| hypothetical protein SeryN2_17535 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133910342|emb|CAM00455.1| hypothetical protein SACE_1124 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 314

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 55/260 (21%), Gaps = 48/260 (18%)

Query: 16  NGFKLIPLRLGDKRPQRLG---------------KWEEQLLSSEKIDK--L--PACGFGF 56
            G+ + PL+ G   P   G               KWE++     K  +      A   G 
Sbjct: 17  RGWPVFPLKPGGSFPALHGVDDCPRTGVCADGHLKWEQRATIYAKRIRACWTHDAYNIGL 76

Query: 57  VCGVGEQPLYAFDIDSKDEK--------------TANTFKDTFEILHGTPIVRI----GQ 98
             G     L   D D                     + F          P +        
Sbjct: 77  ATGPA--GLLVVDFDVPKPGKPVPDRWAAQGVESGMDVFLLLCAEAGQAPPLETFTVATP 134

Query: 99  KPKILIPFRMNKEGIKKKKT--TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156
                + F +  +   +            +D  G G Y VA     +    YT T     
Sbjct: 135 SGGTHLYFTVPADAGLRITQGERNGLGWGIDTRGHGGYVVAPGSI-RRDGTYTITHDRPL 193

Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216
             +          +E L         P      S   +         +            
Sbjct: 194 MPL------PGWLIERLRPQELPPQQPTPVATISGRRAGFLRAAIEGEVRRVTSADGGQR 247

Query: 217 FGEEFYNGSHDEWIPVVMAV 236
               +   +    +    A+
Sbjct: 248 NFALYCAATALGQLVAGGAL 267


>gi|281357235|ref|ZP_06243724.1| Bifunctional DNA primase/polymerase [Victivallis vadensis ATCC
           BAA-548]
 gi|281316266|gb|EFB00291.1| Bifunctional DNA primase/polymerase [Victivallis vadensis ATCC
           BAA-548]
          Length = 660

 Score = 75.7 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 17/220 (7%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQP 64
           A++ +     ++P     K P   +   W+E+L +  +I    A        +CG     
Sbjct: 8   AEEYLAAKLSVLPAVREKKCPAVGKWKVWQERLPTDVEIRAWFANRHDAICLICGKISGN 67

Query: 65  LYAFDIDSKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
           L   D D+   +    +K+   + L+   ++           +R + E     K  +  +
Sbjct: 68  LEILDFDN-HGELFPKWKELIPQELYEKLVIEQTPSGGFHAAYRCSDEICGNLKLAQGER 126

Query: 124 GH-----LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
                  ++  G G  F+    +P                +       ++  +  +   +
Sbjct: 127 DGKLVTLIETRGNGGLFL---CYPTEGYTLKQAAFTSLQILSS--DERKQLFDAAYSLNE 181

Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218
           +      +               +      +I   L C G
Sbjct: 182 KTQGEAKEPPDITDSDLFEERPGDDFNERGDIRDLLICHG 221


>gi|74835168|dbj|BAE44469.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
           Abortusequi]
          Length = 160

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 13/130 (10%)

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
              G     +A    +   R             L+G  ++ + E  +     A  +K +T
Sbjct: 1   MLAGEDNAASAPIETLESPR---------ERAALIGFSLIRLPEQEKWSGDGAG-LKAIT 50

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRD 640
           GGD ++    Y + YS    +    +  N  +   +      RR +++ F + I    RD
Sbjct: 51  GGDALSVDPKYKDAYSTHIPAVILAV-NNNPMRFSDRSGGVSRRRVILHFPEQIAPKERD 109

Query: 641 ASFAQKLETK 650
                K+  +
Sbjct: 110 PQLKNKIARE 119


>gi|227542783|ref|ZP_03972832.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227181409|gb|EEI62381.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 259

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 64/237 (27%), Gaps = 17/237 (7%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQP 64
           QA      G +++PL    K+P              +I K     P    G         
Sbjct: 4   QALGYSEWGLEVVPLN--GKKPFSKPGLYAATTDPNQIIKWWTERPHANIGLRV---PAG 58

Query: 65  LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124
               D+D ++   A+  +             I     + + F +   G    +T      
Sbjct: 59  CLVVDVDPRNGGIADYRRLFPNGSCPYTARTITGSGGLHLYFTLPYSG----ETNAHFGK 114

Query: 125 HLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
            +D+ G  +  V     HPKT + Y W         E    L E  + +++K        
Sbjct: 115 GIDLQGRKRLTVLPPSIHPKTHRAYKWWPFL---PPEQWAPLPEWCLPHVYKVPDTKPKV 171

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
               ++  +           +          +         +  + + +   + +  
Sbjct: 172 PEHIRRHYMKQSKDPGAGLIRTVVEAQEGNRNHALNWAAWTAAKDGLDIKQELINAA 228


>gi|294817427|ref|ZP_06776069.1| Bifunctional DNA primase/polymerase [Streptomyces clavuligerus ATCC
           27064]
 gi|294322242|gb|EFG04377.1| Bifunctional DNA primase/polymerase [Streptomyces clavuligerus ATCC
           27064]
          Length = 374

 Score = 75.3 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 59/269 (21%), Gaps = 71/269 (26%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRL-----------------------GKWEEQLLSSE 44
           E A      G+ + PL  G K P                            +        
Sbjct: 30  ETALWCAAQGWPVHPLAPGRKTPAPNCGDCRDRPHPPQECDCIPAGRWCHGFHAATTDPA 89

Query: 45  KIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKT----------------------- 77
            I       P  G G  CG     L   D+D+                            
Sbjct: 90  LITAWWTRQPRFGVGVACGPA--GLVVIDVDAHPAPLPTPDRLLPGIHIPESVCLDGLRH 147

Query: 78  ANTFKDTFEILHGTP---------IVRIGQKPKILIPFRMNKEGIKKKKTTESTQ---GH 125
                     L G P          VR       L       +  +    +   +     
Sbjct: 148 GFHSLAVLAALRGRPDPSQDESTLRVRTPSGGLHLWYTARPGQEWRCSTGSGVNRALAWQ 207

Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185
           +D+   G Y +A      + + YT   P     V     L +     L +       P  
Sbjct: 208 VDVRAHGGYIIAPGTRTASGR-YTACGP-----VRRPAPLPDWLAAELERTGHRPVPPHP 261

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFL 214
           +     +PS+ W   N  +         L
Sbjct: 262 RTAT-PVPSRAWAAVNAARGGRDSAARVL 289


>gi|330970611|gb|EGH70677.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 823

 Score = 74.9 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 91/705 (12%), Positives = 189/705 (26%), Gaps = 112/705 (15%)

Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE---- 160
            +R + E  K+    E   G +      Q  +  +IHP T + YTW TPP    +     
Sbjct: 89  LYRADAEQYKRFTVFELRAGLV------QDVLPPSIHPGTGQPYTWRTPPDASGLPVLIS 142

Query: 161 DTPLLS------EEDVEYLFKFFQEITVPLVKDKKSIIPS------KTWTNNNNRQYTNR 208
           D   +       +   E    +  +   P  K K    P+       +  +  N  +   
Sbjct: 143 DLLNVWNNWDVFKRGAEAACPWLPKDAKPTGKQKPKPKPALVGGRRPSVIDEFNNCHDVE 202

Query: 209 EITA------------------------------FLSCFGEEFYNGSHDEWIPVVMAVHH 238
           EI                                +     +   NG  ++   V   + H
Sbjct: 203 EILRSHGYTKRGGKWLYPQSSTGLPGITVAEGKVYSHHAADPLANGHQNDAFEVFCLLEH 262

Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY--HHGK 296
               S   KE AR    Q +     +                    S            +
Sbjct: 263 GGDQSKAVKEAARMLGMQSTRPSASDLPPAPTEGSDTPDAAAPDAPSEAAPAPDGGAGEE 322

Query: 297 LIPKGLLASR---------FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
           L  + +L            +    ++AM     +         K W       +      
Sbjct: 323 LTIEQVLRRFALVEGTTHVWDFDKSRAMKKSAFEARV-GKPIAKLWLDATDKKLIADEQV 381

Query: 348 LD----KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
            D    +  A      + M+     +  +   +  + +  R       +    +  +   
Sbjct: 382 KDIEQARKMAGKKGGALGMRPTERYVYIDGTKDVWDREKKRRIAEGAVKMALGDTYALWL 441

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           ++++         +    +             ++   G  ++P  +              
Sbjct: 442 NSSERRVVDVEHIVFDPTMTKDPSIY------INTFDGLPLEPVNDDA----------AC 485

Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKS-TLMNL 520
              +  +  +      E    + TR +   L  LG       +    + GSGKS    + 
Sbjct: 486 ANLRWLISFLCN--HDEAAALWLTRWLAYPLQHLGAKMDTAVLMHSTMEGSGKSLLFADT 543

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIK 579
               +G       +             ++N +  +      V     + +   N   KIK
Sbjct: 544 FGALYGQYAATVGQTQL----------ESNFNAWQSRKMWAVFEEVVSRDQRYNQVGKIK 593

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVI-PFDKPIA 637
            +  G  +     + N + E+      F+        + + D    RR +V+ P +    
Sbjct: 594 HLVTGKTVRMESKFINGWEEANHMNAVFLSNEILPWPISDSD----RRMLVMWPMETLPV 649

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
            R  +  ++LE         W L+      ++           +     R G  T+  ++
Sbjct: 650 ARQKAIGRELENGGVAALYGWLLRVDLGDFNERTRPPSTASRERLVALSRAGWQTF-LYL 708

Query: 698 DDCCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
               ++G  LW    S  L   + E+ ++        +S    +L
Sbjct: 709 WRYGELGRGLWGVCLSTDLYALFLEWCQRNKE---HVMSQTKFSL 750


>gi|220915145|ref|YP_002490449.1| ATPase-like protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219952999|gb|ACL63383.1| ATPase-like protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 548

 Score = 74.9 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 73/237 (30%), Gaps = 15/237 (6%)

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
           +  +            P   + + ++   + E  M +            N++++++ +RG
Sbjct: 248 DDRVCFKRFDWKPAEAPFPAWEEFLTRLSDREAFMAFVW----SCFEKKNRSRQYLWLRG 303

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
            G  GKS ++ ++   FG        +     N+             L G R+VI  +  
Sbjct: 304 EGQDGKSKVLGVLLEVFGPAGAAINNSHVEKGNQ--------FFFSALYGKRLVIYPDCK 355

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
                    ++  T GD +         ++        F+  N      +   A   R I
Sbjct: 356 NAKFGMKEIVRNCTSGDPVAVEFKGETPFTTVL-RIRLFVASNTKPEFTSQ-AADRSRII 413

Query: 629 VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
            +   +  +  D ++ ++L                +   +   D+ + E      +E
Sbjct: 414 YVEVAESASKDDPTWEERL-KAQLPGFLWSCKATYERVCAHHGDIPVSEQTKAMLDE 469


>gi|251793968|ref|YP_003008700.1| bacteriophage P4 DNA primase [Aggregatibacter aphrophilus NJ8700]
 gi|247535367|gb|ACS98613.1| bacteriophage P4 DNA primase [Aggregatibacter aphrophilus NJ8700]
          Length = 130

 Score = 74.9 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 2/124 (1%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF-ESE 480
           + S   L  ++G+L+  T +     +E ++T      +     +   F   ++      E
Sbjct: 3   EQSKELLAFKNGVLNRSTLEFSPHCRENWLTSFIPHNYTNQTENTPHFDSWLNFVADGKE 62

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           +        +   L   +  Q F  + G GGSGKS    +     G Q   +    D+ +
Sbjct: 63  DKKQAILSALYAILTNRHNWQLFFEVTGDGGSGKSVFAQIATMLAGEQNTESGRLVDLDE 122

Query: 541 NRPP 544
            R  
Sbjct: 123 PRGR 126


>gi|69245155|ref|ZP_00603279.1| prophage Lp4 protein 7, DNA replication [Enterococcus faecium DO]
 gi|257879626|ref|ZP_05659279.1| prophage Lp4 protein 7 [Enterococcus faecium 1,230,933]
 gi|257890293|ref|ZP_05669946.1| prophage Lp4 protein 7 [Enterococcus faecium 1,231,410]
 gi|260559711|ref|ZP_05831891.1| prophage Lp4 protein 7 [Enterococcus faecium C68]
 gi|293560113|ref|ZP_06676617.1| prophage Lp4 protein 7, DNA replication [Enterococcus faecium
           E1162]
 gi|314938177|ref|ZP_07845482.1| DNA primase/polymerase [Enterococcus faecium TX0133a04]
 gi|314943779|ref|ZP_07850514.1| DNA primase/polymerase [Enterococcus faecium TX0133C]
 gi|314951148|ref|ZP_07854206.1| DNA primase/polymerase [Enterococcus faecium TX0133A]
 gi|314994614|ref|ZP_07859874.1| DNA primase/polymerase [Enterococcus faecium TX0133B]
 gi|314995576|ref|ZP_07860670.1| DNA primase/polymerase [Enterococcus faecium TX0133a01]
 gi|68195998|gb|EAN10431.1| prophage Lp4 protein 7, DNA replication [Enterococcus faecium DO]
 gi|257813854|gb|EEV42612.1| prophage Lp4 protein 7 [Enterococcus faecium 1,230,933]
 gi|257826653|gb|EEV53279.1| prophage Lp4 protein 7 [Enterococcus faecium 1,231,410]
 gi|260074379|gb|EEW62701.1| prophage Lp4 protein 7 [Enterococcus faecium C68]
 gi|291605980|gb|EFF35410.1| prophage Lp4 protein 7, DNA replication [Enterococcus faecium
           E1162]
 gi|313590164|gb|EFR69009.1| DNA primase/polymerase [Enterococcus faecium TX0133a01]
 gi|313591019|gb|EFR69864.1| DNA primase/polymerase [Enterococcus faecium TX0133B]
 gi|313596627|gb|EFR75472.1| DNA primase/polymerase [Enterococcus faecium TX0133A]
 gi|313597503|gb|EFR76348.1| DNA primase/polymerase [Enterococcus faecium TX0133C]
 gi|313642524|gb|EFS07104.1| DNA primase/polymerase [Enterococcus faecium TX0133a04]
          Length = 282

 Score = 74.9 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 81/297 (27%), Gaps = 46/297 (15%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
           + A +   +G+ + PL  G K P +    W +    S +I++          G +    +
Sbjct: 6   QAATELQKSGWSIYPLSPGTKIPIKGSSGWNDATNDSNQINEWWTEDATRNIGLML--ED 63

Query: 63  QPLYAFDID----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK-------- 110
             +   D+D    +++         +      +    I     I   F++          
Sbjct: 64  HQMVVVDLDQHSETRNGVENYKKLASMYDPFPSTYTEITPGKGIHFFFKIPDGVIIQQET 123

Query: 111 EGIKKKKTTESTQ---GHLDILGCGQYFVAYNIHPKT-KKEYTWTTPPHRFKVEDTPLLS 166
                    +        +DI+  G       I  ++  + Y    P     + +     
Sbjct: 124 GAFADIFGRDDKGKSLSGIDIITKGVPIAPTMIISRSVGRAYE---PIENVSLNNIAPAP 180

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
           +  V  L K  QEI        K+                       L    +    GS 
Sbjct: 181 DWLVNLLLKKPQEIKTQYRPVAKTGT------------------AKKLDMIVQGAGEGSR 222

Query: 227 DEWIP--VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
           ++ +       + H     +  + I    +       ++  N    +   +++   A
Sbjct: 223 NDHLTKLCGWLLWHGVDNQTLAELIYTANAYNEPPLKDKEVNQIIRSMIKKDLRGKA 279


>gi|240142756|ref|YP_002967269.1| hypothetical protein MexAM1_META2p1160 [Methylobacterium extorquens
           AM1]
 gi|240012703|gb|ACS43928.1| Hypothetical protein MexAM1_META2p1160 [Methylobacterium extorquens
           AM1]
          Length = 1370

 Score = 74.9 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 74/243 (30%), Gaps = 23/243 (9%)

Query: 6   WKEQAKQAIHNGFKLIPLRL-GDKRPQR---LGKWEEQLLSSEK------IDKLPACGFG 55
           +   A++   NG+   P +  GD++P +     +W E+  +  +      +    A    
Sbjct: 67  YSHCAQRCWENGWVTFPQQRDGDRKPTKGVTYKQWSERAQTLREVIDMTCLRDAAAQNVA 126

Query: 56  FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVR--IGQKPKILIPFRMNKE-- 111
            V    +  ++  D+D ++    +        + G P +R     + K  + +  +    
Sbjct: 127 TVT-SAQNRVFVVDVDVQNVAITDAIIRLARRMLGVPFIREYTQSRGKASLIYSTDPAND 185

Query: 112 -------GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT-PPHRFKVEDTP 163
                       +  + T   ++IL     F     H KT   + +    P R +     
Sbjct: 186 PVALKRSYPVLSRDGKPTSQAVEILSNNAAFTILGRHWKTGSSFQYRGLHPLRDRPTAAA 245

Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
            +++  +    +   E  V L K +        +                +    +   +
Sbjct: 246 SVTQTQLRAFLERVSEEIVLLGKLQSYQGREVVFEEGAVEGAQVDTDGLVIPGNAKSVRD 305

Query: 224 GSH 226
            S 
Sbjct: 306 VSW 308


>gi|125974153|ref|YP_001038063.1| hypothetical protein Cthe_1647 [Clostridium thermocellum ATCC
           27405]
 gi|125714378|gb|ABN52870.1| conserved hypothetical protein [Clostridium thermocellum ATCC
           27405]
          Length = 851

 Score = 74.9 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 64/265 (24%), Gaps = 37/265 (13%)

Query: 19  KLIPLRLGDKRPQ---RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS--- 72
             IP      R         W     +    ++    G  FV       L   DID    
Sbjct: 30  SKIPYNPLTGRKASSTNPNDWSTLDDAIAAKEQYLYTGLDFVFAK-SGGLVGIDIDHCRD 88

Query: 73  -KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
               + ++T KD  E       +       + I ++         K  ++T+  +++   
Sbjct: 89  KNTGELSDTAKDILERFPSYTEISPSGTG-LHIFYKGEMPA----KGNKNTKTGVEMYAH 143

Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
            +YF                       +  TP    ED   L    +       +  KS 
Sbjct: 144 SRYFTMTG-----------------DPLPGTPDSIAEDNGALAWIHENYIKSKKRSGKSK 186

Query: 192 IPSKTWT-NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIA 250
              K +       +    +     +    E       +W         E   +       
Sbjct: 187 KNRKNFKLEPLTDEEILEKAQTAENHKEFELLWEG--KWQEAGYPSQSEADLALCCMLAF 244

Query: 251 RRWSKQGSTY----DEENFNYKWDT 271
                +        +   F  KWDT
Sbjct: 245 WSGKNKEQMDRLFRNSGLFREKWDT 269


>gi|284028383|ref|YP_003378314.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
 gi|283807676|gb|ADB29515.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
          Length = 290

 Score = 74.5 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 38/149 (25%), Gaps = 4/149 (2%)

Query: 50  PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN 109
           P        G     L   D+D       +  +     L    +          + +R  
Sbjct: 70  PDGQLAVRTGAVA-GLVVVDVDPAHGGNDSLAELVTHQLVPRTLWVRTGSGGAHLYYRHP 128

Query: 110 KEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
              I  +      +  +D+   G Y V     H +T   Y W + P         L++  
Sbjct: 129 GREIASRPMPG--RAGIDVKADGGYVVLPPSMHHRTHLPYQWGSGPADPTEMPPALITAC 186

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTW 197
                 +       P+   +   I +   
Sbjct: 187 LPATPAESATRTAGPIRTTRAGGISNPEG 215


>gi|323138660|ref|ZP_08073727.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
 gi|322396148|gb|EFX98682.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
          Length = 416

 Score = 74.5 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 55/227 (24%), Gaps = 24/227 (10%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-----IDKLPACGFGFVCGVGEQP 64
           A +    G  + P     KRP    KW E              + P              
Sbjct: 23  AHELAAAGLHVHPCDA-TKRPLT--KWSESSSIDAARIDDWWTRWPDALPAIDL--ASAG 77

Query: 65  LYAFDID-SKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
           L   D D          F     +     G P++   +   +   FR   + +  ++   
Sbjct: 78  LLVIDADRHGGPDGVAAFDQLVAVHGLPDGAPVIETAR-GGLHYIFRNLPDQLGNREGGL 136

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP----HRFKVEDTPLLSEEDVEYLFKF 176
           + +G +++ G G Y +A        + +            +     P +       +   
Sbjct: 137 AGRG-INVRGAGGYIIAPGSILPDGRCWREADGSPTLVEAYSSGTIPEVPAW----IVAL 191

Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
            ++             P  +      R   + E             N
Sbjct: 192 IRDKPARPEPSPSPSRPPGSREEAYARAAIDDEAAKVAGAAEGGRNN 238


>gi|301116645|ref|XP_002906051.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262109351|gb|EEY67403.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 325

 Score = 74.2 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 14/232 (6%)

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           GGSGKS L NL+K+AFG   +     S   Q +   +  A   ++        I      
Sbjct: 66  GGSGKSLLANLVKFAFGQDQIGLLSNSM--QEKFGLSEFATKQIVCCDDMPHNIAKTLPR 123

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
           +D +       M     ++  +    +      +    I  N     ++      RR ++
Sbjct: 124 SDFL------SMMTRGSISCPVKGKGSIEVLDWNIPTLINSNHMPNYKDEAGEIVRRLMI 177

Query: 630 IPFDKPIANR--DASFAQKLETKYTLEAKKWF----LKGVKAYISKGLDVDIPEVCLKAK 683
           + F K + +   D    QK++ +             ++    Y SK +    P+  +   
Sbjct: 178 VEFGKQVPDDEVDVELEQKIKDQEFATFLHRCRSKYIEFKAKYASKKVTAFAPQSFIDRS 237

Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
            E R+  +    +        E        + +    + +++   D+     
Sbjct: 238 NEFRETANNSYGFAMGNVAYEEGAEISRSEMRRHLLVWMQEKFGLDKLPKEQ 289


>gi|160946062|ref|ZP_02093280.1| hypothetical protein PEPMIC_00015 [Parvimonas micra ATCC 33270]
 gi|158447845|gb|EDP24840.1| hypothetical protein PEPMIC_00015 [Parvimonas micra ATCC 33270]
          Length = 107

 Score = 74.2 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
           +KA +E R+  D    +I++ C I      ES  L   Y ++  Q    +   +  R+  
Sbjct: 1   MKATDEYREDMDILGPYINENCIINPMAKVESRKLYDDYKKWCYQNDELE---LKNRSFY 57

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
             L  +GF       K ++   +K    G+ LK     + ++ +  D
Sbjct: 58  RQLVTRGF-------KKKRGTANKIFFYGIGLKKEQSYLSNSFSNSD 97


>gi|123188785|ref|XP_001281913.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121837810|gb|EAX68983.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 270

 Score = 74.2 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 81/277 (29%), Gaps = 33/277 (11%)

Query: 478 ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAE 534
            +E V +Y        L     K +  + I G  G+GK+T   +++     G        
Sbjct: 3   GNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTN 62

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
             +I           N S+  +       +   +    +N+  +K +           Y 
Sbjct: 63  LENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYK 115

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
           +       +    +  N         D   RRY+V+        +D  +   L    T  
Sbjct: 116 DQRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPN 171

Query: 655 AKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLW 708
                            +   IP    + ++   +   +    +ID    +C D      
Sbjct: 172 FYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE----- 224

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
               SL  SY +Y ++   Y     S RT   N+K  
Sbjct: 225 ---RSLYDSYKQYCQE---YGYMAASKRTFLANVKSL 255


>gi|301115482|ref|XP_002905470.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262110259|gb|EEY68311.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 243

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 80/245 (32%), Gaps = 36/245 (14%)

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
            + + G GGSGKS LMNL+K  +G                          L      +++
Sbjct: 1   MVLLYGEGGSGKSLLMNLLKAIWG--------------------------LKEYSQKQVL 34

Query: 563 IISETNE-NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP-NKHLFVRNPD 620
              + +     +  A    M   + ++  +                I+  NK    ++  
Sbjct: 35  CCDDMDNLAKTLPKADFLSMATPESISCPVKGKQRLVIVLDWNIGAILNDNKLPNYKDES 94

Query: 621 DAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWF----LKGVKAYISKGLDVD 674
               RR++V  F   I     +  F   ++ +             LK    Y  KG++  
Sbjct: 95  GEVVRRFMVANFMNIIPEERENTIFENDIKDQEFGVFLHRCRSAYLKFYFKYKIKGVESF 154

Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            P   ++ +   R  T+    +I + C   E        L K+   Y ++   Y+ K+ S
Sbjct: 155 CPVSFIENRNLLRMATNYTYQFISEKCTYEEGASISVSQLNKALKAYIKE--RYEMKQTS 212

Query: 735 TRTVT 739
             T+ 
Sbjct: 213 KDTIN 217


>gi|301386003|ref|ZP_07234421.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
           tomato Max13]
          Length = 811

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 93/720 (12%), Positives = 182/720 (25%), Gaps = 142/720 (19%)

Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT-- 162
            +R + E  K+    E   G +      Q  +  +IHP T + YTW TPP    +     
Sbjct: 77  LYRADAEKYKRLTVFELRAGLV------QDVLPPSIHPGTGQPYTWRTPPDASGLPVLIG 130

Query: 163 ------------PLLSEEDVEYLFKFFQEITVPLVKDKKSII--PSKTWTNNNNRQYTNR 208
                          +E    +L K  +       K K++ +     +  +  N  +   
Sbjct: 131 DLLNVWNNWDVFKRGAEAACPWLPKDAKPTAKQKPKPKRAPVAGNRPSVIDEFNNCHDVE 190

Query: 209 EITA------------------------------FLSCFGEEFYNGSHDEWIPVVMAVHH 238
           EI                                +     +   NG  ++   V   + H
Sbjct: 191 EILRSHGYTKRGGKWLYPQSSTGLPGITVAEGKVYSHHAADPLANGHQNDAFEVFCLLEH 250

Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
               S   K+ AR    Q                      D     +  +          
Sbjct: 251 GGDQSKAVKDAARMLGMQS---------------TRPSASDLPPAPTEGSDKPDAAAPDA 295

Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
                 +    A  +       +   L    T  W   DK+                  F
Sbjct: 296 ASEAAPAPDGGAGEELTIEQVLRRFALVEGTTHVW-DFDKS-----------RAMKKSAF 343

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
              + + +  L  +  D                + + +          +  E       T
Sbjct: 344 EARVGKPIAKLWLDATDKKL---IADDQVKDIEQARKMAGKKGGALGMRPTERYVYIDGT 400

Query: 419 SDLLDS----------------SSRFLGEQDG---ILDLETGQKVKPTKELYITKSTGTP 459
            D+ D                  +  L    G   ++D+E         +          
Sbjct: 401 KDVWDREKKRRIAEGAVKMALGDTYALWLNSGERRVVDVEHIVFDPTMTKDPSIYINTFD 460

Query: 460 FVEGEPSQEF-----LDLVSGYFESEEVMDYFT--RCVGMAL--LGGNKAQRFIHIRGVG 510
            +  EP  +      L  +  +  + +        R +   L  LG       +    + 
Sbjct: 461 GLPLEPVNDDAACANLRWLISFLCNHDEAAALWLTRWLAYPLQHLGAKMDTAVLMHSTME 520

Query: 511 GSGKS-TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           GSGKS    +     +G       +             ++N +  +      V     + 
Sbjct: 521 GSGKSLLFADTFGALYGQYAATVGQTQL----------ESNFNAWQSRKMWAVFEEVVSR 570

Query: 570 NDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRY 627
           +   N   KIK +  G  +     + N + E+      F+        + + D    RR 
Sbjct: 571 DQRYNQVGKIKHLVTGKTVRMESKFINGWEEANHMNAVFLSNEILPWPISDSD----RRM 626

Query: 628 IVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV----CLKA 682
           +V+ P +     R  +  ++LE         W L+      ++                +
Sbjct: 627 LVMWPMETLPVARQKAIGRELENGGVAALYGWLLRVDLGDFNERTRPPSTASRERLVALS 686

Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEE--SHSLAKSYSEYREQELNYDRKRISTRTVTL 740
           +   +        W     ++G  LW    S  L   + E+ ++        +S    +L
Sbjct: 687 RAGWQT---FLHLW--RYGELGRGLWGACLSTDLYALFIEWCQRNKE---HVMSQTKFSL 738


>gi|184154704|ref|YP_001843044.1| hypothetical protein LAF_0228 [Lactobacillus fermentum IFO 3956]
 gi|183226048|dbj|BAG26564.1| hypothetical phage protein [Lactobacillus fermentum IFO 3956]
          Length = 274

 Score = 74.2 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 69/285 (24%), Gaps = 39/285 (13%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRL-GKWEEQLLSSEKIDKLPAC-GFGFVCGVGEQP 64
           K +A Q    G  + PL  G K P +    + E    ++ I +     G G         
Sbjct: 4   KRRALQLAQAGVPVYPLAPGSKTPPKGHHGYREATTDTDTILRWSDDWGLGIDL--FTAG 61

Query: 65  LYAFDID-----------SKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNK 110
           +   D+D              +      K   E        P+         L  F    
Sbjct: 62  IVVLDLDRPGTTTDGKAVHGGKDGVKALKIYLEQHQRQLPHPMYAEQTPHGGLHLFFKLD 121

Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT-TPPHRFKVEDTPLLSEED 169
           + +++     +    +DILG   + +A          Y           + DT    +  
Sbjct: 122 QPLERPTRKTNALPGVDILGD--FVIASPSEVD-GSPYLVMQDQTQPVSIHDTATAPQWI 178

Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229
           V  L                    + T                      +    G  + W
Sbjct: 179 VGLLTAPQTAFNPAKTNSLMKGQKTYTGR--------------LFDKIAQGADEGERNNW 224

Query: 230 IP-VVMAVHHETRGSSKGKEI--ARRWSKQGSTYDEENFNYKWDT 271
           +  V  ++ +     +    +             D+   N  + +
Sbjct: 225 LASVTGSILNAGTDPANAYYLIGWINERFISPPLDDREVNAVFKS 269


>gi|299782825|gb|ADJ40823.1| Hypothetical phage protein [Lactobacillus fermentum CECT 5716]
          Length = 274

 Score = 74.2 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 70/285 (24%), Gaps = 39/285 (13%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRL-GKWEEQLLSSEKIDKLPAC-GFGFVCGVGEQP 64
           K +A Q    G  + PL  G K P +    + E    ++ I +     G G         
Sbjct: 4   KRRALQLXQAGVPVYPLAPGSKTPPKGHHGYREATTDTDTILRWSDDWGLGIDL--FTAG 61

Query: 65  LYAFDID-----------SKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNK 110
           +   D+D              +      K   E        P+         L  F    
Sbjct: 62  MLVVDLDRPGTDRNGHAVHGGKNGVKALKRYLEQHQRRLPHPMYAEQTPHGGLHLFFKLD 121

Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH-RFKVEDTPLLSEED 169
           + ++K     +    +DILG   + +A          Y           + DT    +  
Sbjct: 122 QPLQKPTRKPNALPGVDILGD--FVIASPSEVD-GSPYLVMQGQAQPVSIHDTATAPQLI 178

Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229
           V+ L                    + T                      +    G  + W
Sbjct: 179 VDLLTAPQTAFNPTKANSFMKGQKTYTGR--------------LFDKIAQGANEGERNNW 224

Query: 230 IP-VVMAVHHETRGSSKGKEI--ARRWSKQGSTYDEENFNYKWDT 271
           +  V  ++ +     +    +             D+   N  + +
Sbjct: 225 LASVTGSILNAGTDPANAYYLIGWINERFISPPLDDREVNAVFKS 269


>gi|33603114|ref|NP_890674.1| hypothetical protein BB4140 [Bordetella bronchiseptica RB50]
 gi|33568745|emb|CAE34503.1| phage-related hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 700

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 75/280 (26%), Gaps = 54/280 (19%)

Query: 33  LGKWEEQLLSSEKIDKLPACG----FGFVCGVGEQPLYA--FDIDSKDEKTANTFKDTFE 86
              W       +    L   G     GF  G  E   +    D D   +       D   
Sbjct: 83  PDDWAHLASYEDAKATLSRLGAGWILGFALGPDESGGHWQGIDFDDIPQNL---LSDLAN 139

Query: 87  ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKK 146
            +HG   V   +K    I +       +   T       ++    G+YF           
Sbjct: 140 DVHGYVEVSPSRKGAHAIGYG------RHFATLGHNGTGIEAYAKGRYFTVT-------- 185

Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206
                             + +  +  L  + +E   P    +++     T     N +  
Sbjct: 186 ---------------EQRIRDGGLICLAAYIEETLAPRHGARRATNAGMTEVVPVNAKTV 230

Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
               +A L           +  W+ + +A+         G+ +   WS     +D ++  
Sbjct: 231 TELRSALL-----YMRAEDYHLWVNMGLALREL---GETGRGLWMEWSATSEKFDSKDAA 282

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
            KW++F            +++ ++F    +        S 
Sbjct: 283 KKWNSFKPTG--------TSYQAVFAEAARHGWVNPGRSD 314


>gi|81428209|ref|YP_395209.1| hypothetical protein LSA0594 [Lactobacillus sakei subsp. sakei 23K]
 gi|78609851|emb|CAI54898.1| Hypothetical prophage lsa1protein [Lactobacillus sakei subsp. sakei
           23K]
          Length = 266

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 20/164 (12%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQP 64
           A      G ++ PL    K P +     +E   + E++       P C  G       + 
Sbjct: 8   AMSYAKRGLQVFPLTPNSKIPLKGTQGSKEATSTPEQVKTWWTNNPDCNIGVAT----RG 63

Query: 65  LYAFDIDSKDEKTANT------FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118
               DID      A+        +DT+  L  T  V+     +    +    EG++  + 
Sbjct: 64  FIVLDIDINHVDDADGYHSLEVLEDTYNKLPETLTVKTASGGR--HLYFKLPEGVELPQK 121

Query: 119 TESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
                  +DI      Y +           YT+        + +
Sbjct: 122 IAFL-NGVDIKANPNNYVLLPPSRI-NGDAYTFENKRPMADLPE 163


>gi|33865636|ref|NP_897195.1| hypothetical protein SYNW1102 [Synechococcus sp. WH 8102]
 gi|33632806|emb|CAE07617.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 688

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 25/207 (12%)

Query: 4   MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLG--------KWEEQLLSSEKIDKLPACG-- 53
           M W+E+  +    GF L+P   G+K    +          W +   + + I  L   G  
Sbjct: 1   MSWREKLPEL--QGFALLPCGAGEKGKAPIDQVTGKHLNNWPDASFTPDDI--LAMNGKV 56

Query: 54  --FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN-- 109
              G   G     L   DID     T            G  I R     ++ + F++N  
Sbjct: 57  KCVGVRPGPDSDNLLFIDIDGASALTFCQEHRCDLKDAGWIIRRTTADDRLKVAFQINDQ 116

Query: 110 ---KEGIKKKKTTESTQGH--LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
              +E     KT  ST     L++       V    H  +  +Y W   P        P 
Sbjct: 117 ELEEELSDIGKTVHSTGAGEQLELFWSTGQCVVLGDHKTSGGQYVWEGSPAEIDSPTEP- 175

Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSI 191
              E ++ L +  ++      +  K  
Sbjct: 176 -WRELIKLLIQITRQRQSSSGQSDKGD 201


>gi|289642846|ref|ZP_06474982.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca
           glomerata]
 gi|289507323|gb|EFD28286.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca
           glomerata]
          Length = 300

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 57/218 (26%), Gaps = 42/218 (19%)

Query: 11  KQAIHNGFKLIPLRLGDKRP---------------------QRLGKWEEQLLSSEKIDKL 49
           +  I  G+ +  +    KRP                          +    L  +++  +
Sbjct: 13  ESYIEAGWPVF-VLGRTKRPVANCPRCRDAGRDHDPEACACLSCHGFYAATLDLDRVAAM 71

Query: 50  PACG----FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
            +           G     L   DID       +        +  T  V  G      + 
Sbjct: 72  LSAAPRGLLAIRTGALA-GLVVVDIDPGHGGRLDPAL-----MTPTAAVASG-GGGWHLY 124

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPL 164
           +      +  ++    T   +D+   G Y VA    HP T+  Y WT             
Sbjct: 125 YAHPGPPVLSRRLPGRT--GVDVKADGGYVVAPPSIHPVTRTPYRWTARQT------VGE 176

Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202
           +       +       + P      +  P++  T  ++
Sbjct: 177 MPPPLHAAVTAPAAPSSQPTRPPATAGPPARRPTGGDD 214


>gi|283778057|ref|YP_003368812.1| bifunctional DNA primase/polymerase [Pirellula staleyi DSM 6068]
 gi|283436510|gb|ADB14952.1| Bifunctional DNA primase/polymerase [Pirellula staleyi DSM 6068]
          Length = 409

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 14/152 (9%)

Query: 17  GFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDI 70
           G  L+PL    K+P      +++        I       P  G   V G     + A D 
Sbjct: 16  GLSLLPLHYKQKKPAVRSWKRYQTTRPDEATIYHWWANHPERGLAIVLGQVSSCIVARDF 75

Query: 71  DSKDEKTANTFKDTFEILHGT-PIVRIGQKPKILIPFRMNKEGIKK--KKTTESTQGHLD 127
           D+ +      +  +F  L    P V   +     +  R + E I++  K+T        +
Sbjct: 76  DTMEA--YEQWAASFSELAAKLPTVETSR--GRHVYARADFEAIRRRGKETIYEFDDG-E 130

Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
           +   G Y  A      +  +Y W         
Sbjct: 131 LRLSGCYVAAPPSMHPSGSQYRWLISMVELPP 162


>gi|240171663|ref|ZP_04750322.1| hypothetical protein MkanA1_20283 [Mycobacterium kansasii ATCC
           12478]
          Length = 834

 Score = 73.8 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 47/187 (25%), Gaps = 28/187 (14%)

Query: 17  GFKLIPLRL----GDKRPQRLGK--WEEQLLSSEK-IDKLPA---CGFGFVCGVGEQPLY 66
           G+ ++P+R       K P  +    W  +  S  + I    A    G    CG       
Sbjct: 89  GWYVLPVRRVAGKAGKHPGGIVGHEWHHKSSSDPQVIAAWYAATDHGIALHCGR--SGAV 146

Query: 67  AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP---KILIPFRMNK-EGIKKKKTTEST 122
            FD+D  D        D       T   +  +     +    F M   + +         
Sbjct: 147 VFDVDDPDA-----MPDVLARHLDTAPHQSSRPDTPRRGHYVFAMPPGQTLGNGTGRLGG 201

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
               +I G     +A         EY W            P+L  +  E L         
Sbjct: 202 AWG-EIRGANGVIIAAPSWHPEGGEYRWAHAGI------VPVLPADIAELLPDAASAEDA 254

Query: 183 PLVKDKK 189
                  
Sbjct: 255 VSDAVVA 261


>gi|284031274|ref|YP_003381205.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
 gi|283810567|gb|ADB32406.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
          Length = 307

 Score = 73.4 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 43/180 (23%), Gaps = 6/180 (3%)

Query: 50  PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN 109
           P        G+    L   D+D       +  +     L    +          + +R  
Sbjct: 77  PGGQLAVRTGMVS-GLLVVDVDPAHGGWESLSELVARQLVPRTLWVRTGSDGAHLYYRHP 135

Query: 110 KEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
              +  +      +  +D+   G Y V     H +T++ Y W T            +   
Sbjct: 136 GLHMPSRPMPN--RPGIDVKADGGYVVLPPSIHHRTRRPYAWGTGSDLADPAAVVEMPPP 193

Query: 169 DVEY--LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
            +         +    P          +     ++  +     + A       +     +
Sbjct: 194 LIAACLPATPAESTHAPSAPLSGPQRDTGGGGISHPDKLLTAHLDAVRQAPQGKRRTTLY 253


>gi|326955330|gb|AEA29023.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 296

 Score = 73.4 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 46/206 (22%), Gaps = 31/206 (15%)

Query: 18  FKLIPLRLGDKRPQRLGKWEEQLLSS----EKIDKLPACGFGFVCGVGEQPLYAFDIDSK 73
           F + P+    K P     W+++        E   +      G V G     L   D+D  
Sbjct: 21  FPIFPVAPFGKTPAVRR-WQDRATQDNRVIEAWYRQAPFNIGLVTGK---GLVVVDLDVA 76

Query: 74  DEK---------------TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118
                              A   ++T E   G             + F ++     +   
Sbjct: 77  RGGDGRSGESGELSGREHLARIARETGEEYPGDTYTVRTPSGGDHLYFAVSDREFLRNTG 136

Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
                  +D    G Y VA          Y          +             L     
Sbjct: 137 -GRLGARIDTRANGGYIVAAGSRRP-GGMYRVVNRRPIAPL------PSWLATALAPTPP 188

Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQ 204
                 V    S   +   T+  N +
Sbjct: 189 TPRPAPVHAVASGNLTGYVTSAINAE 214


>gi|258616764|ref|ZP_05714534.1| prophage Lp4 protein 7, DNA replication [Enterococcus faecium DO]
          Length = 241

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 64/234 (27%), Gaps = 28/234 (11%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
           + A +   +G+ + PL  G K P +    W +    S +I++          G +    +
Sbjct: 6   QAATELQKSGWSIYPLSPGTKIPIKGSSGWNDATNDSNQINEWWTEDATRNIGLML--ED 63

Query: 63  QPLYAFDID----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK-------- 110
             +   D+D    +++         +      +    I     I   F++          
Sbjct: 64  HQMVVVDLDQHSETRNGVENYKKLASMYDPFPSTYTEITPGKGIHFFFKIPDGVIIQQET 123

Query: 111 EGIKKKKTTESTQ---GHLDILGCGQYFVAYNIHPKT-KKEYTWTTPPHRFKVEDTPLLS 166
                    +        +DI+  G       I  ++  + Y    P     + +     
Sbjct: 124 GAFADIFGRDDKGKSLSGIDIITKGVPIAPTMIISRSVGRAYE---PIENVSLNNIAPAP 180

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT--NNNNRQYTNREITAFLSCFG 218
           +  V  L K  QEI        K+    K             N  +T       
Sbjct: 181 DWLVNLLLKKPQEIKTQYRPVAKTGTAKKLDMIVQGAGEGSRNDHLTKLCGWLL 234


>gi|323138608|ref|ZP_08073675.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
 gi|322396096|gb|EFX98630.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
          Length = 721

 Score = 73.4 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 43/165 (26%), Gaps = 22/165 (13%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQPLY 66
           A   I  G+  IP+    K P     W +  +S+++  +      C  G   G     L 
Sbjct: 30  ALDYIERGWSPIPISFRSKAPSLP-GWTDLRISADEASRYFNGAPCNIGVALGEVSGGLV 88

Query: 67  AFDIDSKDEKTAN-TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125
             D+D ++   A   F      + G    R          +  N   +            
Sbjct: 89  DVDLDCREAIAAAPYFLQKTAAIFGRETAR-----ASHWLYYTNSASVNLSANVYFDDPI 143

Query: 126 ----------LDIL-GCGQYFVAYNI-HPKTKKEYTWTTPPHRFK 158
                     +D+  G     V     H  T +   W        
Sbjct: 144 AKERGAKARLVDLRLGPKVQTVFPGSAHEDTSEPIAWEPGCDGEP 188


>gi|90962176|ref|YP_536092.1| hypothetical protein LSL_1201 [Lactobacillus phage Sal4]
 gi|90821370|gb|ABE00009.1| Hypothetical protein, phage associated [Lactobacillus phage Sal4]
 gi|300214850|gb|ADJ79266.1| Putative uncharacterized protein [Lactobacillus salivarius CECT
           5713]
          Length = 256

 Score = 73.0 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 16/178 (8%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC--GFGFVCGVGEQPLY 66
           Q  + +  G  + P+    K+P +   + +       I +             + +  L 
Sbjct: 6   QVIKMVQRGLYVYPIVPNGKQPIKDYSYLKASQDIALIKRWFMDEPNINIGLNLAKSNLI 65

Query: 67  AFDIDSKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124
             DID+ +       +          +  V   Q   +   FR NK     +KT      
Sbjct: 66  VVDIDNHNNDLQAPLQSLSNLGYNLPSDYVERTQSGGLHYYFRSNKPVKPTRKTKFID-- 123

Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
            +D+L    + V+   +      Y          ++D P      ++ L         
Sbjct: 124 GVDLLSD--FVVSSPSN-----NYKVLNGA---TLDDIPQAPNWIIKALDNRAMPTDK 171


>gi|222475878|ref|YP_002564399.1| hypothetical protein Hlac_2965 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454249|gb|ACM58513.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 440

 Score = 72.6 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/327 (12%), Positives = 84/327 (25%), Gaps = 26/327 (7%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGD---KRPQRLGKWEEQLLSSEKIDKLPACGFGFV 57
           +   QW     Q   +    +P+  G            W +   + + +   P  G GFV
Sbjct: 15  VDRDQWVCWRSQQREDKHTKVPIIPGTTQFASTTDPDTWRDFQTARKAVTSTPVDGLGFV 74

Query: 58  CGVGEQPLYAFDI-DSKDEKTANT---FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
               + PL   D+ D +D  T             L     V   +    ++      EG 
Sbjct: 75  F-TTDDPLIGIDLDDCRDPDTGEPTAWASQIITQLDSYTEVSPSETGYHILVTGALPEG- 132

Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
                  +  G+L++    ++F                       +    + SE   E  
Sbjct: 133 ------RNRAGNLELYDRSRFFTVTGTQLAETPATVAERTAAVASLHAEKVASESSSEPP 186

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS---HDEWI 230
                    P          +      ++ +  NR   A         + G    ++   
Sbjct: 187 STTTDR--SPNDDTTAPETATAGVGALSDEELLNRATAAANGAKFRRLWGGDTSGYESHS 244

Query: 231 PVVMAVHH-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285
              MA+         R   +   + R+       +DE ++     T+  + +     +  
Sbjct: 245 EADMALCRLLAFWTGRDRGRMDRLFRQSGLARDKWDEVHYADG-STYGEKTLERAIARTD 303

Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYN 312
              +           G   +   D+  
Sbjct: 304 DVYTPPGTADASPSAGDTDTAPDDSAA 330


>gi|254555204|ref|YP_003061621.1| prophage Lp3 protein 7 [Lactobacillus plantarum JDM1]
 gi|254044131|gb|ACT60924.1| prophage Lp3 protein 7 [Lactobacillus plantarum JDM1]
          Length = 266

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 49/195 (25%), Gaps = 22/195 (11%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
           ++A +    G+ + PL    K+P + +  ++        I       PA   G       
Sbjct: 8   DKAIELAQQGYAVYPLIENTKKPPKGVAGYQAATSDQNTIFAWFKKHPAYNLGLRL--DL 65

Query: 63  QPLYAFDIDSKDEKTA-----NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
             L   DID  D                + L     +       +    +      +K  
Sbjct: 66  SDLLVVDIDMHDPTKNGRASLAQLFKQGQTLPNDTYIERTANGGVHYFLKYAGAKARKI- 124

Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
                   +D+L    + V         K Y          + D     +  V+ L    
Sbjct: 125 ---DVWPGIDLLSD--FTVIAPSEI-NGKPYQ---AIDGRTLADIKPAPQWLVDKLAGQK 175

Query: 178 QEITVPLVKDKKSII 192
              T     + +   
Sbjct: 176 VNWTSEHACNTRQKK 190


>gi|67922845|ref|ZP_00516344.1| hypothetical protein CwatDRAFT_3556 [Crocosphaera watsonii WH 8501]
 gi|67855338|gb|EAM50598.1| hypothetical protein CwatDRAFT_3556 [Crocosphaera watsonii WH 8501]
          Length = 514

 Score = 72.6 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 72/257 (28%), Gaps = 10/257 (3%)

Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297
             T    +  +  R+   + +    E      D            +            KL
Sbjct: 215 SVTAARERLSDCFRQACCKVTCLAWETEEKGIDDAIAANGSQWFDEMWKKRGSKPKTVKL 274

Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW----SLTLDKITA 353
                    +++       +   +   +Y   TK WY        +W    + +++++  
Sbjct: 275 SRIEHDLPAWNEKSITDWLATLYEKKLIYEDRTKEWYLYGGQKEGVWSITSNESIERMLM 334

Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY---RRQNVEENSKAKSTAQSLE 410
           + M+ L+   +           + K S   +F         + Q ++  S      +   
Sbjct: 335 TQMDNLLDESKKFNKQIYTAMKSVKESNRDKFEKKELLSQLKEQLIDYRSYKLRFVKDCR 394

Query: 411 AGSIFSITSDLL--DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
                 +  D     S    +   +G+LDL+       + + + T +    +    P Q 
Sbjct: 395 ERLSRVVLIDKFVSKSDPNLIPMANGVLDLQDRILHPHSPKNHYTSALPYEYAPNTPYQP 454

Query: 469 FLDLVSGYF-ESEEVMD 484
             + +         +++
Sbjct: 455 IKEWLIEMLEGDLSLVE 471


>gi|258543727|ref|YP_003189160.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01]
 gi|256634805|dbj|BAI00781.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01]
 gi|256637861|dbj|BAI03830.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-03]
 gi|256640915|dbj|BAI06877.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-07]
 gi|256643970|dbj|BAI09925.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-22]
 gi|256647025|dbj|BAI12973.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-26]
 gi|256650078|dbj|BAI16019.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-32]
 gi|256653068|dbj|BAI19002.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256656122|dbj|BAI22049.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-12]
          Length = 288

 Score = 72.2 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 72/248 (29%), Gaps = 29/248 (11%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-----IDKLPACGFG 55
           + ++   E+A+    +G K+ P    DK+P    KW E   +  +         P    G
Sbjct: 30  LALLPVAEKAQLLARHGLKIFPCN-EDKKPVC--KWSEVATNCPESVPLLWRTYPGTLIG 86

Query: 56  FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH---GTPIVRIGQKPKILIPFRMNKEG 112
              G         D+D             ++              +K  + + FR  +  
Sbjct: 87  VATGKAS-GFDVLDLDLYKPDADA----WYQEHCARIPATRTHKTRKDGLHLLFRHRENM 141

Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNI----HPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
              + +       +D+   G Y + +           +   W  P    ++   PL  + 
Sbjct: 142 ---RNSAGKIAPGVDVRADGGYIIWWPAAGYEIIDKSRAQPW--PAWLVEMTQPPLPRKA 196

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228
           D+E+L            +  +  + +      +  +    +I    +     F    +  
Sbjct: 197 DLEHL----DNKLKDADRYVQGAVRAAVQAVASAPEGRRNDILNGETYSLARFIPEGYLT 252

Query: 229 WIPVVMAV 236
              +  A+
Sbjct: 253 ATDIAYAM 260


>gi|227432710|ref|ZP_03914681.1| possible DNA primase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351526|gb|EEJ41781.1| possible DNA primase [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 192

 Score = 72.2 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 47/158 (29%), Gaps = 10/158 (6%)

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLET 649
           G                N+   +++  +   RR  ++          +  D  + +    
Sbjct: 9   GQDSFSFTNHAKLLFTANEAPAIKSN-EGLRRRIKILIAKSSPHVATSGDDDHYTE--YM 65

Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
           K       + +            + + +    A  E     D  + W+++      N   
Sbjct: 66  KERGAFVYYAMSLYMEA-KNRRKMSLTKDIEDATAEWFLKGDDIENWVNEHLVEDTNSRP 124

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
            S+ +     +Y  +      K  S++TV   +++ G+
Sbjct: 125 RSNWIYNELKDYWAENGL--EKVPSSKTVMARIRELGY 160


>gi|227544976|ref|ZP_03975025.1| Bifunctional DNA primase/polymerase [Lactobacillus reuteri CF48-3A]
 gi|300909991|ref|ZP_07127451.1| phage protein [Lactobacillus reuteri SD2112]
 gi|227185037|gb|EEI65108.1| Bifunctional DNA primase/polymerase [Lactobacillus reuteri CF48-3A]
 gi|300892639|gb|EFK85999.1| phage protein [Lactobacillus reuteri SD2112]
          Length = 259

 Score = 72.2 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 78/281 (27%), Gaps = 37/281 (13%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCGVGEQP 64
            A Q    GF ++P +   KRP          L+ E++     K P              
Sbjct: 7   YAIQYAQKGFYVLPTQ--GKRPLIKFA-NTPPLTVEQVKYYWSKYPDANIALRT----VD 59

Query: 65  LYAFDIDSKDEKTANTFKDT----FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
            +  DID+K+    +  K         L    + ++       + ++  K     +    
Sbjct: 60  FFVLDIDTKEAHGKDGMKSYQTLKNTGLIAPTLAQLTASGGNQLFYKKPKNIPVNQ--VI 117

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
             +  +DI      Y +       +K  Y W        +   P         + +   E
Sbjct: 118 GLKQGIDIKAHINNYVIVPPS-TTSKGSYQW--------LNKLP---------MREPKTE 159

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239
           +   + K          W+ ++  +     +   L     E     +   +     +H  
Sbjct: 160 LVKFINKHHPLNNHKNDWSKHHTDKKWTGIVLDNLVKGAPEGQRNDYMTRL-CGQMIHAG 218

Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
              ++    I    S      + +       +   EEIG +
Sbjct: 219 ADDNTIWLLIQYANSFNSPPLENKELEKILSSIIREEIGKS 259


>gi|123328427|ref|XP_001293761.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121870948|gb|EAX80831.1| hypothetical protein TVAG_173510 [Trichomonas vaginalis G3]
          Length = 270

 Score = 72.2 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 83/277 (29%), Gaps = 33/277 (11%)

Query: 478 ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAE 534
            +E+V +Y        L     K +  + I G  G+GK+T   +++     G        
Sbjct: 3   GNEKVYEYILCWFANILQYPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTN 62

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
             +I           N S+  +       +   +    +N+  +K +           Y 
Sbjct: 63  LENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYK 115

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
           ++      +    +  N         D   RRY+V+        +D  +   L    T +
Sbjct: 116 DSRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSD 171

Query: 655 AKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLW 708
                            +   IP    + ++   +   +    +ID    +C D      
Sbjct: 172 FYNHLFSYFMTLDISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE----- 224

Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
               SL   Y +Y ++   Y     S RT   N+K  
Sbjct: 225 ---RSLYDEYKQYCQE---YGYMTASKRTFLANVKNL 255


>gi|86739908|ref|YP_480308.1| hypothetical protein Francci3_1201 [Frankia sp. CcI3]
 gi|86566770|gb|ABD10579.1| conserved hypothetical protein 2SC10A7.05c [Frankia sp. CcI3]
          Length = 295

 Score = 72.2 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 43/153 (28%), Gaps = 17/153 (11%)

Query: 37  EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI 96
            ++      +  +P        G     L   DID ++  T +        +  T  V  
Sbjct: 63  TDRNRIVAMLAAVPDGLLAIRTGTAA-GLAVIDIDPRNGGTLDRSL-----MTPTAAVAT 116

Query: 97  GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPH 155
           G      + +R     +  +    +    +DI   G   VA    HP T + Y W     
Sbjct: 117 G-GGGWHLYYRHPGHPVLSR--PLTGAPGIDIKADGGLVVAPPSLHPTTGRPYQWAGTR- 172

Query: 156 RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
              V + P      +         +T P     
Sbjct: 173 --PVAEMPPA----LIAAVAADPPMTKPAPPRS 199


>gi|284033434|ref|YP_003383365.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
 gi|283812727|gb|ADB34566.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
          Length = 292

 Score = 72.2 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 47/182 (25%), Gaps = 10/182 (5%)

Query: 46  IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
           I+ +P        G     L   D+D      A+        L             + + 
Sbjct: 66  INAVPGGQLAVRTGAVS-GLAVIDVDPAHGGDASLSDLMTAGLVPRTRHVHTGSGGLHLY 124

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPL 164
           +R   + +  +      +  +D+   G Y V     H +T + Y W          D   
Sbjct: 125 YRHPGQHLPSRPMPN--RPGIDVKADGGYVVLPPSIHHRTHRPYRW-----GTAGNDVVE 177

Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
           +    V                 +  +  +     ++  +  +  + A  +    +    
Sbjct: 178 MPPALVTACL-PAPTPAESHTHPRTPVATTAGGGISHPDRLLSAHLDAVRNAPTGKRRTT 236

Query: 225 SH 226
            +
Sbjct: 237 LY 238


>gi|315442842|ref|YP_004075721.1| bifunctional DNA primase/polymerase famiily protein [Mycobacterium
           sp. Spyr1]
 gi|315261145|gb|ADT97886.1| bifunctional DNA primase/polymerase famiily protein [Mycobacterium
           sp. Spyr1]
          Length = 353

 Score = 72.2 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 46/210 (21%), Gaps = 33/210 (15%)

Query: 30  PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89
           P  +  W           +      G   G     +   D+D +     +      E  H
Sbjct: 95  PTIVAWWSG---------RYAGHNIG---GRVPANIVVVDVDPRSG--GDESLAALERQH 140

Query: 90  GTPIVRIG-----QKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPK 143
           G      G             FR     +   +        +DI     Y V     HP 
Sbjct: 141 GRMPDAFGEISGRGDGGRHYWFRAPAGPLSSSR----LGRGIDIKTHSGYVVLPPSIHPD 196

Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
           T + Y     P        P      +    +     +   +    +      +      
Sbjct: 197 TGRPYEKVDGPIT-----PPPAWLAGLLLPEQPKPSTSTRAMTPATARTAHDFFNTGTGT 251

Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
             +  +     S       +G    W PV 
Sbjct: 252 GLSIEKFNENTSWRDVLEPHG----WRPVG 277


>gi|38683726|gb|AAR26902.1| FirrV-1-B27 [Feldmannia irregularis virus a]
          Length = 575

 Score = 71.8 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 72/218 (33%), Gaps = 39/218 (17%)

Query: 480 EEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
           ++++ +    VG      N   + Q    ++G+ G+GKST++ +I+  +G + +     +
Sbjct: 307 QDMVHWLFVFVGRLFFAVNERDQWQVIPFLKGIAGTGKSTVIKVIQKLYGARDIGVLS-N 365

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
           ++ +               +   ++ II E   +  ++ A  + M  G+ ++  + + + 
Sbjct: 366 NMEKQFGAST---------IFDKKVFIIPEMKGDFTLDVAVFQSMVTGEEVSLAVKHESP 416

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654
                 +    +  N+    ++   +  RR +V  F   +     + +    +       
Sbjct: 417 RVG-KWTVPGIMAGNESPNWQDKSGSISRRVVVFDFPNKVPLETSNPNLFCDIVDSEIPA 475

Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
                                     KA    +   D 
Sbjct: 476 I-----------------------IRKATMSYQWAVDH 490


>gi|257883931|ref|ZP_05663584.1| prophage Lp4 protein 7 [Enterococcus faecium 1,231,501]
 gi|257819769|gb|EEV46917.1| prophage Lp4 protein 7 [Enterococcus faecium 1,231,501]
          Length = 274

 Score = 71.8 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 78/293 (26%), Gaps = 46/293 (15%)

Query: 12  QAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLY 66
           +   +G+ + PL  G K P +    W +    S +I++          G +    +  + 
Sbjct: 2   ELQKSGWSIYPLSPGTKIPVKGSSGWNDATNDSNQINEWWTEDATRNIGLML--EDHQMM 59

Query: 67  AFDID----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK--------EGIK 114
             D+D    +++         +      +    I     I   F++              
Sbjct: 60  VVDLDRHSETRNGVENYKKLASMYDPFPSTYTEITPGKGIHFFFKIPDGVIIQQETGAFA 119

Query: 115 KKKTTESTQ---GHLDILGCGQYFVAYNIHPKT-KKEYTWTTPPHRFKVEDTPLLSEEDV 170
                +        +DI+  G       I   +  + Y    P     + +     +  V
Sbjct: 120 DIFGRDDKGKSLSGIDIITKGVPIAPTMIISGSVGRAYE---PIENVSLNNIAPAPDWLV 176

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
             L K  QEI        K+                       L    +    GS ++ +
Sbjct: 177 NLLLKKTQEIKTQYRPVAKTGT------------------AKKLDMIVQGAGEGSRNDHL 218

Query: 231 P--VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
                  + H     +  + I    +       ++  N    +   +++   A
Sbjct: 219 TKLCGWLLWHGVDNQTLAELIYTANAYNEPPLKDKEVNQIIRSMIKKDLRGKA 271


>gi|13470708|ref|NP_102277.1| hypothetical protein mll0485 [Mesorhizobium loti MAFF303099]
 gi|14021451|dbj|BAB48063.1| mll0485 [Mesorhizobium loti MAFF303099]
          Length = 780

 Score = 71.8 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 77/721 (10%), Positives = 184/721 (25%), Gaps = 96/721 (13%)

Query: 24  RLGDKRPQRL--------------GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFD 69
           + G  +P ++                W +   +   +      G GFV      P +  D
Sbjct: 27  KPGSPKPAKMPYSANGGRADTTNPATWSDYPTAVRALASGQYAGIGFVFAEN-DPFFVID 85

Query: 70  IDS-KDEKTANTFKD--TFEILHGTPIVRIGQKPKILIPF-RMNKEGIKKKKTTESTQGH 125
           +D  +D  T     +      +       + Q  + +  F R +K  +       +    
Sbjct: 86  LDGCRDATTGELSAEAAAITRMFPNAAWELSQSGEGIHIFGRCDKVALG---GFRNKWAG 142

Query: 126 L-DILGCGQYFVAYNIHPKTKKEYTWTTPPHRF-------KVEDTPLLSEEDVEYLFKFF 177
             +     ++        +   +  WT             + + +    E D  ++    
Sbjct: 143 WCEFYRTKRFVAFGPGGIQGNIDIDWTNQLAILVPARGVGEQDASQEAVERDPRWIGPDD 202

Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL----SCFGEEFYNGSHDEWIPVV 233
            E  +           +K   +  N Q       A      S  G+ F + S D+ +  V
Sbjct: 203 DEELLRRFLASTGGTKAKLQASPTNLQLWEAHAAALAQYFPSATGKPFDHSSADQALANV 262

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293
           +A     R   +   +  R     S         +   +    +    +   T       
Sbjct: 263 LAFW-TGRDYGRIIRLFGR-----SALGRREKWTRRAAYRNSTVNAAVRSCQTVYGGNGQ 316

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
             +           SD        +      L       W+ +   +    + +      
Sbjct: 317 ERRSRQVQENVRIGSDIGADIHTRVMTLEDML----QDLWFIRHSKSGGAIADSR----- 367

Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
                       +  L         ++       +T   +    +        Q  ++ S
Sbjct: 368 -----------TLNVLPFATAQREYSASRYEVAASTIDPKTGDFKKRYLPVFNQWEQSPS 416

Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG-TPFVEGEPSQEFLDL 472
             S+             + +G +  E  +        +        P       + + + 
Sbjct: 417 RKSVDVITW--------KPNGAVICEAPESQGAGFNTWRGFQPYRLPDGSQSLVEVWSEH 468

Query: 473 VSGYFESEEVMDYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
           ++     E     F + +   +          ++ I    G G++ L +++         
Sbjct: 469 LAYLIPIEAERVRFEQWLAHIVQRPEELPQSAYLFITEETGIGRNWLSSVLVRVLRGYVA 528

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGD 585
              +  +++               RL    + ++ E            ++ K+K M   +
Sbjct: 529 AGIDIQEMLDGTFNG---------RLSRKLLAVVDEAKAGMQGYGRWSHSEKLKSMINPE 579

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
                  +G  + E       F   N      +  D   RR+ V+    P   +   + +
Sbjct: 580 MRRINEKHGLEFVEWNCCRWLFFSNNWDALPFDASD---RRFNVV--ANPTHRQSPDYYE 634

Query: 646 KLETKYTLEAKKWFLKGVKAYISK-----GLDVDIPEVCLKAKEEERQGTDT-YQAWIDD 699
           ++ ++         ++     +       G   D+ E   KA        D    A+ D+
Sbjct: 635 RIYSQIANPDFISAVRKRLELLDISGFKPGAIPDMNEAKRKALGAMASDLDNLLAAFRDE 694

Query: 700 C 700
            
Sbjct: 695 W 695


>gi|160941777|ref|ZP_02089104.1| hypothetical protein CLOBOL_06673 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435274|gb|EDP13041.1| hypothetical protein CLOBOL_06673 [Clostridium bolteae ATCC
           BAA-613]
          Length = 102

 Score = 71.8 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
           ++ A      G  + PL    K P     +++      +IDK     P    G   G   
Sbjct: 8   RQYALAYAKVGMAVFPLVPKSKNPATQHGFQDATTDFNQIDKWWMKNPNYNIGIATGQVS 67

Query: 63  QPLYAFDIDS---KDEKTANTFKDTFEILHGTP 92
             L   D+D    K +    T +D        P
Sbjct: 68  GGLIVIDLDIDKEKGKHGNETLRDWEAEQGQLP 100


>gi|9631496|ref|NP_048160.1| ORF MSV089 Putative NTPase, Rabbit fibroma virus C5 (vaccinia D5R)
           homolog, similar to PIR:G41700 [Melanoplus sanguinipes
           entomopoxvirus]
 gi|4049849|gb|AAC97809.1| ORF MSV089 Putative NTPase, Rabbit fibroma virus C5 (vaccinia D5R)
           homolog, similar to PIR:G41700 [Melanoplus sanguinipes
           entomopoxvirus]
          Length = 834

 Score = 71.8 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 103/326 (31%), Gaps = 39/326 (11%)

Query: 325 LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384
            +  D     K +K+    W           M +     + + +       ++K   S +
Sbjct: 354 KFIKDLDIVRKVNKDLKLYWDGMKWMPIIDDMIYGKIALKLLDEYKNTMLLHDKKYVSTK 413

Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444
           ++     R                    +  S ++D  +++   +   +GI DL+    +
Sbjct: 414 YFKEAKVRI------------------LTDLSDSTDTYNTNPYLIQMCNGIFDLKNNIFI 455

Query: 445 KPTKELYITKSTGTP-------------FVEGEPSQEFLDL-VSGYFESEEVMDYFTRC- 489
              +     K    P             +     +   L   ++              C 
Sbjct: 456 YGIEAKKYIKPNYIPLSYKNIEEMSEEEYNNYMENYNMLVTVINNIIPENHKDRKIFECN 515

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +  +LL  +K      + G   SGK+T+  L+   FGN ++       I   +       
Sbjct: 516 ISSSLLQISKETIT-FLVGPTKSGKTTIKLLLAALFGNLFLTIP---IIDYVKQHNPHSP 571

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
           N  L +L G  +   SE+N  D+ ++  IK MT    + +R+   N   +     T  I 
Sbjct: 572 NAWLGKLNGKLVCFASESNACDKFDSQTIKHMTER-IIISRVLNSNEGDQ-HNYATQIID 629

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKP 635
            N    +   D+A   R  VI  D  
Sbjct: 630 TNIFPSIDITDNAILERLAVINIDHS 655


>gi|66391796|ref|YP_238520.1| replication protein [Streptococcus phage 2972]
 gi|56718453|gb|AAW27959.1| replication protein [Streptococcus phage 2972]
          Length = 271

 Score = 71.5 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 66/286 (23%), Gaps = 31/286 (10%)

Query: 4   MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVC 58
           M+  + A      G+ +IP+    K P     + ++   +   I +     P        
Sbjct: 1   MEMVDYAINYQRMGYSVIPISKNGKTPLIS--FADKPPMTENDIRRVWRDNPDANIALRT 58

Query: 59  GVGEQPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
                  +  D+D   D       ++     L    +  I       I  + +       
Sbjct: 59  ----DTFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHIYLKKDPNHP--I 112

Query: 117 KTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
                    +DI      Y +    +  +K  Y W                   ++ L K
Sbjct: 113 SQNIGMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDKVHSPKD-GSITEAPLALIKVLQK 170

Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VV 233
              E     V    S     T T                         G  +  +   V 
Sbjct: 171 MKPEPLSYEVSSFASDSVRSTKTTKLFESI-----------LLGFGDQGGRNNALAEFVG 219

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279
             +                 S      D++ F   + +   +EI  
Sbjct: 220 GLLLRGVDPEITYHLAKMANSNTSEPLDDKEFERTFKSMLDKEIRR 265


>gi|188496353|ref|ZP_03003623.1| conserved hypothetical protein [Escherichia coli 53638]
 gi|188491552|gb|EDU66655.1| conserved hypothetical protein [Escherichia coli 53638]
 gi|323171853|gb|EFZ57497.1| nucleoside triphosphatase, D5 family [Escherichia coli LT-68]
          Length = 241

 Score = 71.1 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 72/230 (31%), Gaps = 38/230 (16%)

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
            +++GSR++++++  +        IK++TGGD +     Y   ++            N  
Sbjct: 11  AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNP 68

Query: 614 LFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
           +          RR ++  FD  +  A +D    +K+         +  L           
Sbjct: 69  MIFTERAGGVARRRVIFRFDNIVNEAEKDRELPEKI-AAEIPVIIRRLLA---------- 117

Query: 672 DVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCCDI------GENLWEE 710
           +   PE       E+R         Q TD          ++++   +          +  
Sbjct: 118 NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTT 177

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
            +SL + Y  +         K ++       +K    + G +    +   
Sbjct: 178 RNSLYRVYLAFMAYAGRT--KPLNVNDFGKAMKPAAKVYGHEYITRKING 225


>gi|123192617|ref|XP_001282637.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121840302|gb|EAX69707.1| hypothetical protein TVAG_545240 [Trichomonas vaginalis G3]
          Length = 269

 Score = 71.1 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 84/274 (30%), Gaps = 25/274 (9%)

Query: 477 FESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINA 533
            E+++V +Y        L     K +  + I G  G+GK+T   +++     G       
Sbjct: 1   METKKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMT 60

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
              +I           N S+  +       +   +    +N+  +K +           Y
Sbjct: 61  NLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKY 113

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
            +       +    +  N         D   RRY+V+        +D  +   L    T 
Sbjct: 114 KDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTS 169

Query: 654 EAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEES 711
           +                 +   IP    + ++   +   +    +ID+     +    + 
Sbjct: 170 DFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDE 223

Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
            SL  SY +Y ++   Y     S RT   N+K  
Sbjct: 224 RSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 254


>gi|168229312|ref|YP_001686833.1| orf39 [Streptococcus phage 858]
 gi|155241707|gb|ABT18027.1| orf39 [Streptococcus phage 858]
          Length = 271

 Score = 71.1 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 87/289 (30%), Gaps = 31/289 (10%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63
           E A      GF +IP+    KR   + K++++  S E++ +L    P             
Sbjct: 6   EYALHYQKLGFSVIPIDKTSKR--AVTKFKDKTFSEEEVKRLWHEHPNANIALRT----T 59

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
             +  DID  + +      + +E+    P     + P       + K            +
Sbjct: 60  DFFVIDIDVSESEDGFQSLEDWELSKYIPKTLTAKTPSGGRHIFLKKPKGVNISQDIRVK 119

Query: 124 GHLDILG-CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
             +DI      Y +    +    + Y+W         +      +E ++ L         
Sbjct: 120 PGIDIKANNNNYILVAPSNSSKGR-YSW-----NKDTDTIAEAPKEIIDIL--------- 164

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHHET 240
              K ++   P    TN    +++++    F          G  +  +   +   +  + 
Sbjct: 165 ---KSEQKHEPLVFSTNYQRNEFSSKTAKLFEQIVFGLGDKGGRNNALASFIGGLLTRKV 221

Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTS 289
              +              +  +   +  +++   +E+       +T ++
Sbjct: 222 DIDAVYLLAKIANHYTPESLPQSELDRTFESMVRKELDTKHGNTTTHST 270


>gi|159036858|ref|YP_001536111.1| bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205]
 gi|157915693|gb|ABV97120.1| Bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205]
          Length = 290

 Score = 70.7 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 42/170 (24%), Gaps = 35/170 (20%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQ-------RLGKW--------------------EEQLLS 42
           A +    G+ +  L    KRP            +                     +    
Sbjct: 6   AMEYAERGWPVFML-ARSKRPLAGCERCDDKRGYDGHDRDICPCLTCHGFYAATTDPDRI 64

Query: 43  SEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
           +  ID  P        G     +   D+D ++           + L       I     +
Sbjct: 65  TAMIDTAPRGQLALRTGRASD-VVVLDVDPRNGGHRGLATLVADGLAPRTAYVITGSDGL 123

Query: 103 LIPFRMNKEGI-KKKKTTESTQGHLDILGCGQYFVAYNIHP-KTKKEYTW 150
            + +R     +  K          +DI   G Y V       +T + Y W
Sbjct: 124 HLFYRHPGTPLAAKVPGV----PGVDIKTDGGYVVLPPSIHQRTGRPYRW 169


>gi|169829605|ref|YP_001699763.1| hypothetical protein Bsph_4172 [Lysinibacillus sphaericus C3-41]
 gi|168994093|gb|ACA41633.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 861

 Score = 70.7 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 68/285 (23%), Gaps = 38/285 (13%)

Query: 19  KLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS--KD 74
             IP  +  G+ R      W   + +          G GF+           DID+  ++
Sbjct: 51  TKIPYNVNGGEARSNDANTWSSFVDAVTAARTGRYNGIGFMFTQN-DEYIGIDIDNCYEN 109

Query: 75  EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQY 134
                      + L         +   + +  +            +S++  ++I   G+Y
Sbjct: 110 GVFNEVATSVIDSLDSYTEFSPSKTG-VHLIVKGKMPDWVSGTGKKSSKYGIEIYSYGRY 168

Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL-------VKD 187
           F                    R    +    ++E  + L  +F    +            
Sbjct: 169 FTFTG---------------DRENGNEIQERTDEVAKLLETYFTRDEMAAFANVIIPQGV 213

Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD--------EWIPVV-MAVHH 238
                 S TW    N +   +    +      +  + S D         W       +  
Sbjct: 214 ANKEEDSVTWQRMFNSKQGEKIQAMYRGELIIDNDHSSTDLSLCNYLAFWCNKDFWKMDR 273

Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
             R S   ++      +    Y E        T          K 
Sbjct: 274 MFRQSGLMRDKWDE-RRGELLYGEITLIKAISTKKETVSEYANKN 317


>gi|330963895|gb|EGH64155.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 823

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 92/704 (13%), Positives = 191/704 (27%), Gaps = 110/704 (15%)

Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT-- 162
            +R + E  K+    E   G +      Q  +  +IHP T K YTW TPP    +     
Sbjct: 89  LYRADAENYKRFTVFELRAGLV------QDVLPPSIHPGTGKPYTWRTPPDAEGLPVLIS 142

Query: 163 ------------PLLSEEDVEYLFK--------------------------------FFQ 178
                          +E    +L K                                  +
Sbjct: 143 DLLNVWNNWDVFKRGAEAACPWLPKDTKPAGKQKPKPKPAPAGGKRPSVIDEFNNCHDVE 202

Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238
           EI       K+        ++      T  E   +     +   NG  ++   V   + H
Sbjct: 203 EILRSNGYTKRGSKWLYPQSSTGLPGITVDEGKVYSHHAADPLANGHQNDAFEVFCLLEH 262

Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFN-------YKWDTFDFEEIGDTAKKRSTFTSLF 291
               S   KE AR    Q +     +          + D  +   + + A          
Sbjct: 263 GGDQSKAVKEAARMLGMQSTRPTASDLPPAPTEGSDQPDAAEPAAVSEAAPAPGGGAGEE 322

Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT---KAWYKKDKNNVYIWSLTL 348
               +++ +  L    +  ++       KK  F         K W       +       
Sbjct: 323 LTIEQVLRRFALVEGTTHVWDFDKSRAMKKSAFEARVGKLIAKLWLDATDKKLIADDQVK 382

Query: 349 D----KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
           D    +  A      + M+     +  +   +  + +  R       +    +  +   +
Sbjct: 383 DIEQARKMAGKKGGALGMRPTERYVYIDGTKDVWDREKKRRIAEGAVKMALGDTYALWLN 442

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
           +++         +    +             ++   G  ++P  +               
Sbjct: 443 SSERRVVDVEHIVFDPTMTKDPSIY------INTFDGLPLEPVNDDV----------ACA 486

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKS-TLMNLI 521
             +  +  +      E    + TR +   L  LG       +    + GSGKS    +  
Sbjct: 487 NLRWLISFLCN--HDEAAALWLTRWLAYPLQHLGAKMDTAVLMHSTMEGSGKSLLFADTF 544

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQ 580
              +G       +             ++N +  +      V     + +   N   KIK 
Sbjct: 545 GALYGQYAATVGQTQL----------ESNFNAWQSRKMWAVFEEVVSRDQRYNQVGKIKH 594

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVI-PFDKPIAN 638
           +  G  +     + N + E+      F+        + + D    RR +V+ P +     
Sbjct: 595 LVTGKTVRMESKFINGWEEANHMNAVFLSNEILPWPISDSD----RRMLVMWPMETLPVA 650

Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
           R  +   +LE+        W L+      ++           +     R G  T+  ++ 
Sbjct: 651 RQKAIGHELESGGVAALYGWLLRVDLGDFNERTRPPSTASRERLVALSRAGWQTF-LYLW 709

Query: 699 DCCDIGENLWEE--SHSLAKSYSEYREQELNYDRKRISTRTVTL 740
              ++G  LW    S  L   + E+ ++        +S    +L
Sbjct: 710 RYGELGRGLWAVCLSTDLYALFLEWCQRNKE---HVMSQTKFSL 750


>gi|302544086|ref|ZP_07296428.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302461704|gb|EFL24797.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 303

 Score = 70.7 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 71/277 (25%), Gaps = 37/277 (13%)

Query: 17  GFKLIPLRLGDKRPQRLG--------------------KWEEQLLSSEKIDKLPAC---- 52
           GF++IPL    K P                           +     E I  L A     
Sbjct: 22  GFRVIPLTR-AKLPAVRSPHHHDPVPLPCRGACGRLGHGVHDASADPEAIRALFAAAPWA 80

Query: 53  -GFGFVCGVGEQPLYAFDIDSK-----DEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
            G+G  CG     L   D+D K     D   A               V +         +
Sbjct: 81  TGYGIACGCAPHHLIGVDLDLKHEPRVDGAAALARLARRYAFAVPHTVTVLTPGGGRHLW 140

Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
                G+    +       +DI G G Y V         +       P        P L 
Sbjct: 141 LCGPPGLGVPNSAGRIAPGIDIRGTGGYLVGPGSATSRGRYRLAPGSPAWHPAPVPPELL 200

Query: 167 ---EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
              +  V    +        +    +     +    +   +  +R   A  +C   E   
Sbjct: 201 SLVQPPVRTPPERATARPSAVGAPGRDAALVRFVRESQEGRRNDRLFWA--ACRAYEAGA 258

Query: 224 GSHDEWIPVVMAVH-HETRGSSKGKEIARRWSKQGST 259
           G       +  A+H   TR  ++    +   S  GST
Sbjct: 259 GDELAPALIEAALHTGLTRREAEATVASAARSATGST 295


>gi|227495251|ref|ZP_03925567.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
 gi|226831703|gb|EEH64086.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
          Length = 737

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/371 (12%), Positives = 103/371 (27%), Gaps = 51/371 (13%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC----GFGFVCGVGE 62
           +E A+    NG  ++P+    K   R  ++++   +++++          G   + G   
Sbjct: 29  RETAQLMQANGLSILPIGASKKTTVRWKEYQQIPATTDQVKAWFNSPNNLGVAVITGAVS 88

Query: 63  QPLYAFDIDS-------KDEKTANTFKDTFEILHGT------PIVRIGQ--------KPK 101
             L   +I+         + K A    D +   +          V IG            
Sbjct: 89  GNLEMLEIEGAGKHNPNAEPKPAIPLNDIYTAFNARGAGELFTKVFIGNEVWSEYTPSGG 148

Query: 102 ILIPFRMNKEGIKKKKTTESTQGH---LDILGCGQYFVAYNIHPKTKKEYT-----WT-T 152
               +R+    + K             ++  G G Y +      +   +       W  T
Sbjct: 149 RHFYYRVQGTPVLKNTKLACNAEGEVVIETRGEGGYSIVAPTPKECHNQPELITSGWELT 208

Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
                     P ++ E+ + + K  Q        +K     S            +R    
Sbjct: 209 STSPTPWAHIPTVNAEEYQMIHKIMQSFNQMPEPEKTVAPASVLMVGQQALIEDDR---- 264

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIA-------RRWSKQGSTYDEENF 265
           ++   G++F N     W  ++     +    + G+E         R  +     Y     
Sbjct: 265 WIVRPGDDFNN--KASWSEIIEPYGWQFNYQANGQEFWTRPGKDVREGASATINYAGNGC 322

Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR----FSDAYNKAMFSIYKK 321
            + + +     IG +  K   +  L ++         LA +          +   +    
Sbjct: 323 LWVFSSSTCFPIGQSISKFWAYAILNHNGDGKASAKALAEKGYGTPKQQTEQERLAYSVA 382

Query: 322 GHFLYTADTKA 332
                +A+   
Sbjct: 383 EPACVSAEGGT 393


>gi|289644930|ref|ZP_06476972.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca
           glomerata]
 gi|289505239|gb|EFD26296.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca
           glomerata]
          Length = 212

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 13/119 (10%)

Query: 46  IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
           +  +PA       G     L   DID       +        +  T  V  G      + 
Sbjct: 72  LTTIPAGLLAVRTGAVS-GLVVVDIDPGHGGRLDRTL-----MTPTATVATG-GGGWHLY 124

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTP 163
           ++     +  +         +DI   G Y  A    HP T + Y W        V + P
Sbjct: 125 YQHPGTPVLSRPLPGHV--GIDIKADGGYVTAPPSTHPTTGRPYQWVGTR---PVNEMP 178


>gi|78214078|ref|YP_382857.1| hypothetical protein Syncc9605_2574 [Synechococcus sp. CC9605]
 gi|78198537|gb|ABB36302.1| hypothetical protein Syncc9605_2574 [Synechococcus sp. CC9605]
          Length = 426

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 8/118 (6%)

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK-PTKELYITKSTGTPFVEGE 464
              + +     +  +  D +       +G LDL T            +T +    +    
Sbjct: 310 MMEILSEVETYLQHNDWDGN-HLAAFSNGTLDLSTNILRPGHDPSDRLTFAFPYRWDPKA 368

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-----AQRFIHIRGVGGSGKSTL 517
               +L  +   F  ++    F   +G  +    +      ++   I G  G GK  +
Sbjct: 369 TCPRWLQFIEQTF-DDDTAKVFRAAIGWTIKPKKQDAPFPFEKAFDIAGPKGCGKGVI 425


>gi|285017019|ref|YP_003374730.1| hypothetical protein XALc_0198 [Xanthomonas albilineans GPE PC73]
 gi|283472237|emb|CBA14743.1| hypothetical protein XALc_0198 [Xanthomonas albilineans]
          Length = 822

 Score = 70.3 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 94/313 (30%), Gaps = 37/313 (11%)

Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE----EVMDYFTRCVGMAL-LGGNKA 500
             ++      G P           +DL+      E    E+ D+  R     +   G K 
Sbjct: 457 DPQITCNLWGGWPTTPQPGKCDRIIDLLHYLCSEERNSRELFDWVLRWCAYPIQHPGAKM 516

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
           +  + + G  G+GK+     I   +G    I  + + + ++       A+  L  +    
Sbjct: 517 KSCVVVHGAQGAGKNLFFEAIMAIYGQYGSILDQNALVDKHNDW----ASRKLFLIADEV 572

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
           +       + +      +K +  G  +     +   Y E       F+   K   V   D
Sbjct: 573 VAQAHRFEQKN-----LLKVLVTGTRIRINPKHIAAYDEVNHCNLVFLSNEKMPVVLEKD 627

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK----GLDVDIP 676
           D   RR+ VI +   I   +   A + E           L+    Y+        +    
Sbjct: 628 D---RRHCVI-WTPSIKEEEYYQAIRDELGNGG------LEAFHDYLLNVDLGNFNPGTR 677

Query: 677 EVCLKAKEEERQ-GTDTYQAWIDDCCDIGENLWEE----SHSLAKSYSEYREQELNYDRK 731
            +  +AK +      D+   +ID          +     +    + Y  +         K
Sbjct: 678 PLMTEAKSDLIDLAKDSPLDFIDALTSWNMPPMKPMPGLTEDWYQVYQRWCVNTGT---K 734

Query: 732 RISTRTVTLNLKQ 744
             S +    +LK+
Sbjct: 735 PASLKRFIHSLKK 747


>gi|254436894|ref|ZP_05050388.1| hypothetical protein OA307_1764 [Octadecabacter antarcticus 307]
 gi|198252340|gb|EDY76654.1| hypothetical protein OA307_1764 [Octadecabacter antarcticus 307]
          Length = 668

 Score = 69.9 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/329 (13%), Positives = 106/329 (32%), Gaps = 33/329 (10%)

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
           L S+++ +   DG+  +   +K     +        + F +  P   F + +      E+
Sbjct: 203 LPSNTQKIVFVDGLAVVNIWEK----PKYRDLTVAPSVFTKENP-DYFDEFLRFVIPVEQ 257

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVG--GSGKSTLMNLIKYAFGNQYVINAEASDIM 539
             + F   +   L   ++  ++  +      G+GKS +  + +  FG           ++
Sbjct: 258 DRNMFLDWLAWQLQNEHQKPKWAVMLYSQNQGTGKSVVAEVCEALFGQANATRCSVEQLL 317

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
                E          L    +++   + +     A  IK +     +T     G   ++
Sbjct: 318 ARFNKEI---------LQHKMVIVEEVSIQKGSAKANGIKTLITDPTVTMEAK-GAPSTK 367

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK---PIANRDASFAQKLETK--YTLE 654
            P   +  +  N         D   RR+ ++ FD        ++  +  KL       + 
Sbjct: 368 EPILCSFILTTNHLPTWLEESD---RRFFIMNFDHEGYNNGGKEYEYFSKLGEAISEKVA 424

Query: 655 AKKWFLKG-VKAYISKGLDVDIP------EVCLKAKEEERQGT-DTYQAWIDDCCDIGEN 706
                +K    A +++ L    P      +   +  ++ RQ + D  +  +++  +    
Sbjct: 425 KSPAAIKALYNALLARDLSDFNPMSLNVQKYSTQIMKDLRQLSPDVVKQNLEELFENNGI 484

Query: 707 LWEESHSLAKSYSEYREQELNYDRKRIST 735
            +       K    + ++E N      S 
Sbjct: 485 HFIPQDLAVKLVKTFAKREANAVTHLFSE 513


>gi|323139022|ref|ZP_08074081.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
 gi|322395682|gb|EFX98224.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
          Length = 713

 Score = 69.9 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 52/236 (22%), Gaps = 28/236 (11%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQPLY 66
           A   I  G+  IP+    K P     W +  +S+++  +         G V G     L 
Sbjct: 31  ALDYIERGWSPIPIGFRSKAPSLP-GWTDLRISADEASRYFNGAPANIGVVLGQNSSGLS 89

Query: 67  AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ--KPKILIPFRMNKEGIKKKKTTESTQG 124
             D+D  +   A                  G+         +  N   +           
Sbjct: 90  DVDLDCPEAIAA------APYFLPKTAAIFGRETARASHWLYYTNSASVNLSANVYFDDP 143

Query: 125 H----------LDIL-GCGQYFVAYNI-HPKTKKEYTWTTPPHRFKV----EDTPLLSEE 168
                      +D+  G     V     H  T +   W             +D     E 
Sbjct: 144 IAKERGAKARLVDLRLGPKVQTVFPGSAHEDTSEPIAWEPGCDGEPARVECDDLLRRVER 203

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
                             D +  +         +   +     A     G+E    
Sbjct: 204 LAACSLLARHWPAHGARHDARLAVAGVLVRAGFSESESKLFAEALARAVGDEDARD 259


>gi|118581963|ref|YP_903213.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379]
 gi|118504673|gb|ABL01156.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379]
          Length = 734

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
           +E VE L    ++   P    ++            +++  +  I    +       +  +
Sbjct: 240 QEIVEGLKLELRQKNEPKTAIERQHNLGFD--KQIDQEANDTSIQKIEALLNRIDADCGY 297

Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE-ENFNYKWDTFDFEEIGDTAKKRS 285
           D+W+ V MAV HET GS +G  +  RWS +GS Y   +   YKW +F F+E         
Sbjct: 298 DDWLHVGMAVFHETSGSDEGLALFDRWSSKGSKYKGIKEIEYKWRSFRFDEST-----PV 352

Query: 286 TFTSLFYHHGKLIPKGL 302
           T  +L          G 
Sbjct: 353 TIGTLIKMARDAGADGF 369


>gi|323138104|ref|ZP_08073177.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
 gi|322396566|gb|EFX99094.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
          Length = 708

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 40/166 (24%), Gaps = 24/166 (14%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQPLY 66
           A   I  G+  IP+    K P     W +  +S+++  +         G V G     L 
Sbjct: 30  ALDYIERGWSPIPIGFRSKAPSLP-GWTDLRISADEASRYFNGAPANIGVVLGQNSSGLS 88

Query: 67  AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ--KPKILIPFRMNKEGIKKKKTTESTQG 124
             D+D  +   A                  G+         +  N   +           
Sbjct: 89  DVDLDCPEAIAA------APYFLPKTAAIFGRETARASHWLYYTNSASVNLSANVYFDDP 142

Query: 125 ----------HLDIL-GCGQYFVAYNI-HPKTKKEYTWTTPPHRFK 158
                      +D+  G     V     H  T +   W        
Sbjct: 143 IAKERGAKARIVDLRLGPKVQTVFPGSAHEDTSEPIAWEPGCDGEP 188


>gi|255323766|ref|ZP_05364892.1| bifunctional DNA primase/polymerase, N- family [Corynebacterium
           tuberculostearicum SK141]
 gi|255298946|gb|EET78237.1| bifunctional DNA primase/polymerase, N- family [Corynebacterium
           tuberculostearicum SK141]
          Length = 242

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 61/238 (25%), Gaps = 27/238 (11%)

Query: 33  LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL 88
              +++    + ++       P    G       + +   DID K     +  + T   +
Sbjct: 17  PHGFKDFTSDARRVRSWWSTYPTANIG---ANPPRGVVVIDIDVKHGGIESWAQLTAGHV 73

Query: 89  HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKE 147
               +  +       + FR+  +G K +    +T   +D+     Y V     HP T   
Sbjct: 74  VPETLTVLTGSGGWHLWFRLPYQG-KLRGQLAATDSGIDVKTHTGYLVMPPSVHPDTGGL 132

Query: 148 Y---TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQ 204
           Y   TW              L +    +++   +                         +
Sbjct: 133 YLLHTWAP---------IAPLPQWLYRHVYAPLRATRPARPGLLTIAPGDGAGLIRVVAE 183

Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
               +    L               + +   +     G++ G           S +++
Sbjct: 184 SEEGQRNKVLFWAACRAAEDG----LNIDRQL--IDAGTAAGLPEWEARRTVASAHNK 235


>gi|284040171|ref|YP_003390101.1| ATPase P [Spirosoma linguale DSM 74]
 gi|283819464|gb|ADB41302.1| P-loop ATPase and inactivated derivatives-like protein [Spirosoma
           linguale DSM 74]
          Length = 749

 Score = 69.5 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 75/578 (12%), Positives = 163/578 (28%), Gaps = 71/578 (12%)

Query: 63  QPLYAFDIDSKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
             L + D+D  +E       +  +   +   + R      + + FR++ +   +      
Sbjct: 94  SGLMSVDLDHLEESEIQRVFNLLKSDPYVYAVFRSVGGKGLCVIFRVDYQRWLESF---- 149

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP-HRFKVEDTPLLSEEDVEYLFKFFQEI 180
               + I    Q+ +             W        ++       +  V Y  + F+  
Sbjct: 150 --EGIRIYLTEQHGLVMG----------WDASVKDICRLRFVSYDPDTYVNYKAQLFK-- 195

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
                K+KK ++         + +Y   +I A           GS+++W  +  A+   +
Sbjct: 196 -KYPRKEKKEVVKLPYTHTETDIRYVLDQIHARALDL-----TGSYEDWFRIGWAL--IS 247

Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
           +     + I    S+  S+YD  + + K++          + K +TF       G     
Sbjct: 248 QYGEVARPIFHEVSQYHSSYDSNDCDKKFNYLVATR--PHSIKIATFYYYCRQAGLDTAT 305

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
                       +++ ++ KK      +            V   +   +     I+  + 
Sbjct: 306 PQTKE------VQSLAAMAKKQKVSIPSAVDT--------VLRMTDISEAEARPIIEQVY 351

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           +  ED        E   ++ +S   ++N   RR      S       +     +  +   
Sbjct: 352 ASTEDFATQETIYEQGVRHIQSHFLFYNEVSRRIESPSGSIFGKWEVNELYNEVLILFDG 411

Query: 421 LLDSSSR-FLGEQDGI---LDLETGQKVKPTKELYITKSTG-TPFVEGEPSQEFLDLVSG 475
            L   +   L         ++       +          +     +E +   E       
Sbjct: 412 KLGRQAFESLLFSRKTVPPINPLKQFFSQHQHNKPTGIISQLASSIETDTGWELDQFA-- 469

Query: 476 YFESEEVMDYFTR--CVGM-ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
                   +YF R   +G+ AL   N     + + G    GK+     +           
Sbjct: 470 ----PSYTEYFLRKWLIGLVALAFDNLCDLMLILTGPQNVGKTEFFRRL----------- 514

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
                       +  +     I L  + IV + E +     +   +K +        R  
Sbjct: 515 LPEELRRYFAETKLDRGKDDEILLCENWIVFLDELSGKSFQDVGLMKNLLSSKVFDLREP 574

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
           YG+T  +           N    + +P     RR I I
Sbjct: 575 YGSTNVKLKRRAALCGSSNPQAILSDPTG--NRRIIPI 610


>gi|284038164|ref|YP_003388094.1| ATPase P [Spirosoma linguale DSM 74]
 gi|283817457|gb|ADB39295.1| P-loop ATPase and inactivated derivatives-like protein [Spirosoma
           linguale DSM 74]
          Length = 748

 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 79/578 (13%), Positives = 166/578 (28%), Gaps = 71/578 (12%)

Query: 63  QPLYAFDIDSKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
             L + D+D  +E   N   +  +   +   + R      + + FR++ +   +      
Sbjct: 93  SGLMSVDLDHLEESEINRVFNLLKSDPYVYAVFRSVGGKGLCVIFRVDYQRWLESF---- 148

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP-HRFKVEDTPLLSEEDVEYLFKFFQEI 180
               + I    Q+ +             W        ++       E  V Y  + F+  
Sbjct: 149 --EGIRIYLTEQHGLVMG----------WDASVKDICRLRFVSYDPETYVNYKAQLFK-- 194

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
                K+KK ++        ++ +Y   +I A            ++++W  +  A+   +
Sbjct: 195 -KYPRKEKKEVVKLPYTHTESDIRYVLDQIHAKALDL-----TAAYEDWFRIGWAL--IS 246

Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
           +     + I    S+  S+YD  N + K++          + K +TF       G     
Sbjct: 247 QYGDAARPIFHEVSQYHSSYDPNNCDKKFNYLVATR--PHSIKIATFYYYCRQAGLDTAT 304

Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
                       +++ ++ KK     T+  +         V   +   + I   I+  + 
Sbjct: 305 PQTKE------VQSLAAMSKKQKVSITSAVET--------VLKMTEIPEDIARPIIEQVY 350

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
              E         E   ++ ++   ++N   RR      S       +     +  +   
Sbjct: 351 ESTEQFDTNETIYEQGVRHIQTHFLFYNEVSRRIESPSGSIFGKWEVNELYNEVLILFDG 410

Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-----PFVEGEPSQEFLDLVSG 475
            L   +                  +   +    K TG        +E +   E       
Sbjct: 411 KLGRQAFESLLFSRKTVPPVNPLKQFFYQHQHNKPTGIISQLASSIETDTGWELDQFA-- 468

Query: 476 YFESEEVMDYFTR--CVGM-ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
                   +YF R   +G+ AL   N     + + G    GK+     +           
Sbjct: 469 ----PSYTEYFLRKWLIGLVALAFDNLCDLMLILTGPQNVGKTEFFRRL----------- 513

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
                       +  +     I L  + IV + E +     +   +K +        R  
Sbjct: 514 LPEELRRYFAETKLDRGKDDEILLCENWIVFLDELSGKSFQDVGLMKNLLSSKVFDLREP 573

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
           YG+T  +           N    +R+P     RR I I
Sbjct: 574 YGSTNVKLKRRAALCGSSNPQAILRDPTG--NRRIIPI 609


>gi|123203098|ref|XP_001284247.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121845344|gb|EAX71317.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 261

 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 79/266 (29%), Gaps = 25/266 (9%)

Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQN 541
           Y        L     K +  + I G  G+GK+T   +++     G          +I   
Sbjct: 1   YILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGK 60

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
                   N S+  +       +   +    +N+  +K +           Y +      
Sbjct: 61  F-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCEN 113

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661
            +    +  N         D   RRY+V+        +D  +   L    T +       
Sbjct: 114 VANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFS 169

Query: 662 GVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYS 719
                     +   IP    + ++   +   +    +ID+     + +  +  SL  SY 
Sbjct: 170 YFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYK 223

Query: 720 EYREQELNYDRKRISTRTVTLNLKQK 745
           +Y ++   Y     S RT   N+K  
Sbjct: 224 QYCQE---YGYMTASKRTFLANVKSL 246


>gi|126436228|ref|YP_001071919.1| hypothetical protein Mjls_3651 [Mycobacterium sp. JLS]
 gi|126236028|gb|ABN99428.1| hypothetical protein Mjls_3651 [Mycobacterium sp. JLS]
          Length = 801

 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 70/288 (24%), Gaps = 49/288 (17%)

Query: 12  QAIHNGF-KLIPLRLGDKRPQRLG--KWEEQLLSSEKIDKL------PACGF-----GFV 57
           +    G+   +PL  G K P   G    +    +  +I                   G  
Sbjct: 37  RYRLAGWLGTLPLPAGKKNPPPTGYTGHQASHPTRAQIAAWVGDPARRGANICLRLAGID 96

Query: 58  CGVGEQ----PLYAFDIDS-----KDEKTANTFKDTFEILHGTPIVRIGQKP----KILI 104
           C    +     +   D+D      KD++  +        L   P   I          + 
Sbjct: 97  CAPENRIDAFEVVGIDVDHYAKGGKDKRGGDQLAKLEAELGPLPATWISSARVDGTSGIR 156

Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK------ 158
            FR+      + +     +      G     V  + +P       W  PP          
Sbjct: 157 YFRVPAGLTFRGQVAADIECIY--RGYRFAVVWPSTNPDAGGATYWWFPPGTTPNAGGRK 214

Query: 159 -----------VEDTPLLSEEDVEYLFK-FFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206
                        D PLL +  +++L +        P+  D              N    
Sbjct: 215 AWNSHTDVLPKPADLPLLPDAWIDHLTQGRMSATADPIDMDSSVDELYAWADATFNDSAG 274

Query: 207 NREITAFLSCFGEEFYN--GSHDEWIPVVMAVHHETRGSSKGKEIARR 252
           +         F                +V A  H  R +++G    + 
Sbjct: 275 DAMCGRVEKSFHTLKAEIAEDATSHDKIVKAHWHIYRLAAEGHTGWKD 322


>gi|84517218|ref|ZP_01004573.1| hypothetical protein SKA53_00225 [Loktanella vestfoldensis SKA53]
 gi|84508893|gb|EAQ05355.1| hypothetical protein SKA53_00225 [Loktanella vestfoldensis SKA53]
          Length = 260

 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 12/208 (5%)

Query: 17  GFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK----LPACGFGFVCGVGEQPLYAFDIDS 72
           G+++ P     K+P     +         I++     P        G     +   D+D 
Sbjct: 18  GYRVFPSN-QQKKPCVKDPFGRATNDKAGIEELFGNFPNAMTAIPTGPI-NGVTVVDLDV 75

Query: 73  KDE-KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
           K       T +   + L  T +VR      I + FR   EG+    +       +DI G 
Sbjct: 76  KGGVNGIETLRGLIDDLPPTMLVRTP-SGGIHLYFRTGSEGL--PSSVGKLGPGIDIRGS 132

Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
           G   +++      K  Y W      F     P +  +    ++                 
Sbjct: 133 GANAISFGS-TSQKGMYRWDHSVSGFTWRPAP-MPADLKRLIYAATPSSGTQTTNGYTRS 190

Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGE 219
              +  T        N E+ + +    +
Sbjct: 191 DVGERLTTPIVTGQRNSELASRIGYLLK 218


>gi|149012725|ref|ZP_01833701.1| phage protein [Streptococcus pneumoniae SP19-BS75]
 gi|147763325|gb|EDK70263.1| phage protein [Streptococcus pneumoniae SP19-BS75]
          Length = 270

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 83/277 (29%), Gaps = 25/277 (9%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK----LPACGFGFVCGVG 61
           KE A Q    GF +IP+   +K P    ++ ++   ++ +I++     P           
Sbjct: 2   KEYALQYQKLGFSVIPINPKNKMPLI--EFADKPAMTASEIERFWDGYPNANIALRT--- 56

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILH---GTPIVRIGQKPKILIPFRMNKEGIKKKKT 118
               +  DID   ++        +E L+    T   +     K L+ F+ + E       
Sbjct: 57  -TNFFVIDIDKHGKENGFESLKKWEHLNLIEPTLQAKTASGGKHLLYFKRDDEP---ITQ 112

Query: 119 TESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
                  +DI      Y +      +  + Y W     +     T +    D+    K  
Sbjct: 113 MIKFLPGVDIKAHENNYIIVAPSATENGQ-YEW--DLEKSAEGGTIVTPSRDLIRAIKKQ 169

Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMA 235
              T     D K  +      +    +    ++   ++    +   G  ++ +   V   
Sbjct: 170 YGKTHGYRYDGKDGLRDLARRSQTRDRTQTTDLFETIALGFGD--EGGRNDKLAKFVGGL 227

Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
           ++         +      +   +   E+      ++ 
Sbjct: 228 LYRAVDDGVVVQLARLANANSPNPLPEKEMMRTIESM 264


>gi|115534315|ref|YP_783844.1| hyphotheical protein [Streptomyces laurentii]
 gi|23978907|dbj|BAC21270.1| hyphotheical protein [Streptomyces laurentii]
          Length = 250

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 44/173 (25%), Gaps = 26/173 (15%)

Query: 35  KWEEQLLSSEK-----IDKLPACGFGFVCGVGEQPLYAFDID----SKDEKTANTFKDTF 85
           KWE++  +  +       + P    G   G     L   D+D         +        
Sbjct: 2   KWEDRATTDRERIAGAWGQGP-FNVGLATGP--SGLVVVDLDMPKEGASGLSGAEVFAAL 58

Query: 86  EILHGTP---IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHP 142
               G P     R G        +     GI+   +       +D    G Y VA     
Sbjct: 59  CERAGQPLPATFRAGTASGGEHLYFTAPVGIRLGNSAGLLGQLVDTRAWGGYVVAPGSIT 118

Query: 143 KTKKEYTWTTPPHRFKVEDTPL--LSEEDVEYLFKFFQEITVPLVKDKKSIIP 193
                YT         ++D P+  L    +E L    +             + 
Sbjct: 119 P-GGVYTV--------LDDAPVLPLPSWLLEALTARQKSSRPRGGVPAFPAVS 162


>gi|313667338|ref|YP_004049739.1| hypothetical protein Ocepr_2371 [Oceanithermus profundus DSM 14977]
 gi|313153969|gb|ADR37819.1| hypothetical protein Ocepr_2371 [Oceanithermus profundus DSM 14977]
          Length = 282

 Score = 68.8 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 57/252 (22%), Gaps = 24/252 (9%)

Query: 32  RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG- 90
               W     +     +    G GFV       +   D+D   +          E +   
Sbjct: 44  NPDSWSSYAHAVFVAQRGGFDGIGFVF--AGDGIVGVDLDGVRDPETGRLDAWAEEIVVR 101

Query: 91  -TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT 149
                 +    + L  F        +       +G +++    ++F              
Sbjct: 102 LGSFAEVSPSGRGLHIFLR-----GEIPGERRRRGPVEVYEKDRFFTFTGAVV------- 149

Query: 150 WTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE 209
              P     +   P       +      QE   P  +   S            R + ++ 
Sbjct: 150 ---PGAPHTINADPDALAWLYQTYLDPPQERKPPSSRSLTSTYEPADDQVVLERMFRSKH 206

Query: 210 ITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGSSKGKEIARRWSKQGSTYDEEN 264
                + +   +    +       +A  +          ++   + RR       +D + 
Sbjct: 207 GERNRALWEGRWQELGYASQSEADLAFCNALAVFTGGDLAQMDRLFRRSGLMREKWDRKT 266

Query: 265 FNYKWDTFDFEE 276
               +     + 
Sbjct: 267 GGETYGEMTLKR 278


>gi|317501014|ref|ZP_07959222.1| hypothetical protein HMPREF1026_01165 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897592|gb|EFV19655.1| hypothetical protein HMPREF1026_01165 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 145

 Score = 68.4 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           + G  +   ++       N   +K+  G D +      G       +        N+   
Sbjct: 1   MYGKLLNACADIPCKAMENTDVLKKAVGEDTLIYEKK-GQDAIHFHSYAKLLFSTNEMPQ 59

Query: 616 -VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            + N  DA++RR +++  ++ +    +D    +K     +  A    +  +K    +
Sbjct: 60  NLENKSDAFYRRLLILDMNRVVKSGEKDLHLKEK-VQAESDYAIHMAMIALKNLYEQ 115


>gi|28379033|ref|NP_785925.1| prophage Lp3 protein 7 [Lactobacillus plantarum WCFS1]
 gi|28271871|emb|CAD64776.1| prophage Lp3 protein 7 [Lactobacillus plantarum WCFS1]
          Length = 266

 Score = 68.4 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 51/195 (26%), Gaps = 22/195 (11%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
           ++A +    G+ + PL    K P + +  +++  +    I       P    G       
Sbjct: 8   DKAIELAQQGYSVYPLIENMKNPPKGVAGYKDATIDQGTIFAWFENHPNYNLGLRL--DL 65

Query: 63  QPLYAFDIDSKD-----EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
             L   D+D  D       +        + L     +       +    +     ++K  
Sbjct: 66  SDLLVVDVDMHDQTKNGRNSLAQLFKQGQTLPNDTYIERTANGGVHYFLKYAGAKVRKV- 124

Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
                   +D+L    + V         K Y    P     + D     +  V+ L    
Sbjct: 125 ---DVWPGIDLLSD--FTVIAPSEI-NGKPYE---PLDDRTLTDIKPAPQWLVDKLAGQK 175

Query: 178 QEITVPLVKDKKSII 192
              T       +   
Sbjct: 176 VNWTSEHAYTTRQKK 190


>gi|229551170|ref|ZP_04439895.1| bifunctional DNA primase/polymerase [Lactobacillus rhamnosus
           LMS2-1]
 gi|229315462|gb|EEN81435.1| bifunctional DNA primase/polymerase [Lactobacillus rhamnosus
           LMS2-1]
          Length = 278

 Score = 68.4 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 26/177 (14%)

Query: 13  AIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67
              +GF + PL  G + P +    +++     E+  K     P    G         +  
Sbjct: 14  YQQHGFAVYPLAPGTRTPLKGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 69

Query: 68  FDIDSKDE---KTANTFKDTFEI----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116
           FDID   +     ++T              +    I     + I F   KE         
Sbjct: 70  FDIDVGHKSGTNGSDTLAKLCADGRAGQISSSYAEISPNGGLHIFFTYPKELKLTSRSDL 129

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
            +    +  LD +  G     +    +         P    K+     + +  ++ +
Sbjct: 130 FSKNGEKTGLDYVATG--VPVFPSIRENGIY----QPLRGRKITKLAPVPQWLLDEI 180


>gi|15805557|ref|NP_294253.1| hypothetical protein DR_0530 [Deinococcus radiodurans R1]
 gi|6458224|gb|AAF10112.1|AE001911_7 hypothetical protein DR_0530 [Deinococcus radiodurans R1]
          Length = 891

 Score = 68.0 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 52/205 (25%), Gaps = 28/205 (13%)

Query: 19  KLIPLRLGDKRP------QRLGKWEEQLLSSEK-IDKLPACGFGFVCGVGEQPLYAFDID 71
            L+P+  G K P          +W     ++ + +   P  G G +    +      D D
Sbjct: 20  ALVPVPQGTKGPRAKGWDSDPAQWITTPSAAREYLTAHPGAGVGLLHSESQTAALDIDHD 79

Query: 72  SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG--------IKKKKTTESTQ 123
                 A    D   +L   P    G+K      FR+                   +   
Sbjct: 80  GAALALAAVGVDLAAVLASNPYRVRGKKG-EKPIFRVPDGLSLNRHALSWPDPSGKKGPG 138

Query: 124 GH------LDILG-CGQYFVAYNI-HPKTKKEYTWTTP----PHRFKVEDTPLLSEEDVE 171
           G        ++ G  G   V     HP T + Y WT P              LLS     
Sbjct: 139 GRPAPLTIFELRGGAGVQDVMPPSVHPDTGRPYEWTGPVPASLGELPELPPELLSLWQRW 198

Query: 172 YLFKFFQEITVPLVKDKKSIIPSKT 196
                      P    +      + 
Sbjct: 199 AALLPVMRAACPWAPAELPAPAERD 223


>gi|75761156|ref|ZP_00741147.1| Primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491355|gb|EAO54580.1| Primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 345

 Score = 68.0 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 84/305 (27%), Gaps = 29/305 (9%)

Query: 4   MQWKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVG 61
            QW    K+  +     +P ++  K  +      W    +  EK  +    G GFV    
Sbjct: 16  SQWVLWRKEKRNGKLTKVPYQVNSKMAQANNRNTWSSFEMVVEKYKQGGYDGIGFVF-SK 74

Query: 62  EQPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
           +      D+D    D + +   +D    +  +          I I  +            
Sbjct: 75  QDDYVGIDLDKCCVDGELSELARDIM-SIVPSYTEYSPSGNGIHIITKGKIPLRGPGTGK 133

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
           +     L++    +YF                        E+  +L ++ +E   K    
Sbjct: 134 KVPSIGLEVYRHTRYFTFTGDSINNN--------HVEESTENLKVLFQKYIEK--KEVPA 183

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE----------- 228
            +      K S   + + +    R + ++   A    F     NG H             
Sbjct: 184 ASKIPSVSKGSNRSNLSNSELWERMFNSKNGGAIKDLFCGVLINGDHSSTDMALANHLAF 243

Query: 229 WIPVVMA-VHHETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
           W     A +    R S+  ++   +  S  G TY E   +    +       + A     
Sbjct: 244 WTDKDAAKMDTMFRESALMRDKWDKQHSSDGLTYGEMTIDRAISSTHNSISNNNASNNKE 303

Query: 287 FTSLF 291
              + 
Sbjct: 304 NEKIL 308


>gi|145224477|ref|YP_001135155.1| hypothetical protein Mflv_3896 [Mycobacterium gilvum PYR-GCK]
 gi|145216963|gb|ABP46367.1| hypothetical protein Mflv_3896 [Mycobacterium gilvum PYR-GCK]
          Length = 692

 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 59/246 (23%), Gaps = 38/246 (15%)

Query: 8   EQAKQAIHNGFKLIPLRL-------------------GDKRPQ-RLGKWEEQLL----SS 43
           ++A+     GF + P                        K P    G W           
Sbjct: 16  QKAQHLHQRGFHVFPTDHPDQRSCIGLHGPNNPCDGHRGKHPAVAWGTWAVNPTPQMIDV 75

Query: 44  EKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL 103
              D+      G  CG     L   D D  D +           L  T  V  G+     
Sbjct: 76  AWKDRHGLANIGIACGP--SGLVVLDEDG-DGEVTRWCVTYGVTLPDTYEVTTGR--GRH 130

Query: 104 IPFRMN--KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
           + F  +   + I            LD+ G G Y V       +   YT         +  
Sbjct: 131 LYFAWDHTAQRIGNVPKAVKDFA-LDVRGDGGYAVGEGSQHVSGAIYT------GNGLPA 183

Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
            PL  +     L    +         +         T+ N  +   RE    L  +    
Sbjct: 184 APLPVQVAEILLAAQTKRSEPVSGPTESPWDTFAGGTDPNTTKIGFRERHNALIAYAGRL 243

Query: 222 YNGSHD 227
            N   D
Sbjct: 244 RNTGLD 249


>gi|313576839|gb|ADR67014.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp.
           pneumoniae]
          Length = 521

 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYF- 477
            R +G ++G+LD  +G     +K  ++       F            +  F   +     
Sbjct: 411 RRLIGFRNGVLDTSSGIFSPHSKSHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAS 470

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
            +    +     + M L      Q F+ + G GGSGKS L  +    
Sbjct: 471 GNPTKRNVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATML 517


>gi|256824525|ref|YP_003148485.1| DNA primase/polymerase-like protein [Kytococcus sedentarius DSM
           20547]
 gi|256687918|gb|ACV05720.1| DNA primase/polymerase-like protein [Kytococcus sedentarius DSM
           20547]
          Length = 317

 Score = 68.0 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 58/198 (29%), Gaps = 17/198 (8%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65
           A++    G  + P   G KRP     + +     E+I       P        G     +
Sbjct: 25  ARELAAVGVPVFPCLSGGKRPLTTHGFHDATTDLERITAWWREHPEANLAVPTGAASGVV 84

Query: 66  YAFD-----IDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
                    +D                  G   + +      +  +       +++++ +
Sbjct: 85  VVDVDVHGPVDGYRAFERAHRAGLV---SGWWQLLVATPSAGMHAY-YPATPDREQRSWQ 140

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           + +  +D  G G Y V       T       +  +R +  ++   S  D + L +F    
Sbjct: 141 AARAGIDFRGDGGYIVVPPSTVSTGG----KSAGYRVRRTNSGASSVLDSDQLREFLDPR 196

Query: 181 TVPLVKDKKSIIPSKTWT 198
             P  +  + +  S   +
Sbjct: 197 PTPAGRSGRKVERSADVS 214


>gi|302382356|ref|YP_003818179.1| hypothetical protein Bresu_1244 [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192984|gb|ADL00556.1| hypothetical protein Bresu_1244 [Brevundimonas subvibrioides ATCC
           15264]
          Length = 525

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 25/186 (13%)

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYF 486
           LG  DG L+L  G             +T T F       +F + V+      + E+ ++ 
Sbjct: 127 LGLPDGALNLFKG------------FTTKTAFG--GDYSKFKEHVNQNLAGGNVELSEWM 172

Query: 487 TRCVGMA-LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
              +    L    +    + +RG  GSGKST  N++    G QY    +++  +  R   
Sbjct: 173 WDFMADIFLNPTKRPPVMLILRGSKGSGKSTFSNVLARLIGEQYCPVIDSAQGLTGRFAG 232

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
              +   L+ +  +           D  + A++K +     +     +G T  + PA F 
Sbjct: 233 QTFSRAMLLVVEEAYFA-------GDLASEARLKSLVTSPRLPVEEKHGATTMQ-PAYFR 284

Query: 606 PFIVPN 611
             +  N
Sbjct: 285 ICMTAN 290


>gi|124378239|ref|YP_001029432.1| GfV-D3-ORF2 [Glypta fumiferanae ichnovirus]
 gi|124270646|dbj|BAF45567.1| GfV-D3-ORF2 [Glypta fumiferanae ichnovirus]
          Length = 323

 Score = 68.0 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 8/171 (4%)

Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG--GSGKSTLMNLIKYAFGNQYVINA 533
            F  +   D+F   +   L G    + F+ +       +GK++L  L+K  FG+ Y+ N+
Sbjct: 1   MFPEQSERDWFLSFIARFLNGKRADEPFLILIDEHEDRTGKTSLAKLLKAVFGSYYLKNS 60

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL-- 591
           +      +R  +  +    L  L   R+++     + D +N   IK +TG      +   
Sbjct: 61  KMVIAGGSR--DNNEYAGGLYGLNEKRLLLADGLQKTDTLNCGFIKAITGDCNYYIKHVN 118

Query: 592 NYGNTYSESPASFTPFIVPN--KHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
            +  T  E        IV N          D+ + ++ +V P       +D
Sbjct: 119 KFFRTEFEFIVQAGLVIVANENNMPIFDKNDENFLKKMVVCPLRSRFVTQD 169


>gi|292491099|ref|YP_003526538.1| hypothetical protein Nhal_0978 [Nitrosococcus halophilus Nc4]
 gi|291579694|gb|ADE14151.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4]
          Length = 810

 Score = 67.6 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 110/359 (30%), Gaps = 38/359 (10%)

Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEE-----VMDYFTRCVGMAL-LGGNK 499
             ++      G P        Q  L+L+      E      ++D+  + +   +   G K
Sbjct: 452 DTQIKCNLWEGWPTEPKAGNCQSLLELLEYMCGRENQNSQALLDWVLKWLAYPIQNPGAK 511

Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
            +  + I G  G+GK+     I   +G    I  + S +       A K    +      
Sbjct: 512 MRTALVIHGPQGTGKNLFFECIMQIYGRYGRII-DQSAVEDKFNDWASKKLFLIAD---- 566

Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
              +I+ +      N  K+K +  G+ +         Y E       F+   +   V   
Sbjct: 567 --EVIARSELFHIKN--KLKGLITGEWIRINPKNIGAYEERNHVNMVFLSNERMPVVLEE 622

Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
           DD   RR+ +I   + +                +EA       +      G +       
Sbjct: 623 DD---RRHCIIWTPEKLPKAVYDEVAAEIRDGGVEALH---HYLLNLDLTGFNEHTRPPH 676

Query: 680 LKAKEEERQ-GTDTYQAWIDDCCDIGENLW-------EESHSLAKSYSEYREQELNYDRK 731
            +AK+E  +   DT   +  D   + +  +         S  L   Y  +    L   R 
Sbjct: 677 TEAKQELIELSMDTCTEFYHD---LADGEFGDLHQWPVLSDDLFDLYRSWCS--LRGHRS 731

Query: 732 RISTRTVTLNLKQK-GFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
             S R     L +K G     K+        ++R    L  + A +   D S  + + R
Sbjct: 732 PASQRRFNDILIRKHGAQKLRKQIMTPAGRSNQRTF--LIFRDAVDKPPDESEAVWYGR 788


>gi|327383939|gb|AEA55415.1| Bifunctional DNA primase/polymerase [Lactobacillus casei LC2W]
 gi|327387121|gb|AEA58595.1| Bifunctional DNA primase/polymerase [Lactobacillus casei BD-II]
          Length = 270

 Score = 67.6 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 45/177 (25%), Gaps = 26/177 (14%)

Query: 13  AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67
              +GF + PL    + P      +++     E+  K     P    G         +  
Sbjct: 11  YQQHGFAVYPLAPETRTPLAGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 66

Query: 68  FDID--SKDEKTANTFKDTFEI-----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116
           FDID   K     N                +  +       + I F   KE         
Sbjct: 67  FDIDMGHKSGANGNETLAKLCADGRAGQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDL 126

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
            +    +  LD +  G     +    +         P    K+       +  ++ +
Sbjct: 127 FSKNGEKTGLDYVATG--VPVFPSIRENGMY----QPLKGHKITKLAPAPQWLLDEI 177


>gi|191639829|ref|YP_001988995.1| hypothetical protein LCABL_30870 [Lactobacillus casei BL23]
 gi|190714131|emb|CAQ68137.1| Putative uncharacterized protein ps609 [Lactobacillus casei BL23]
          Length = 273

 Score = 67.6 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 45/177 (25%), Gaps = 26/177 (14%)

Query: 13  AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67
              +GF + PL    + P      +++     E+  K     P    G         +  
Sbjct: 14  YQQHGFAVYPLAPETRTPLAGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 69

Query: 68  FDID--SKDEKTANTFKDTFEI-----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116
           FDID   K     N                +  +       + I F   KE         
Sbjct: 70  FDIDMGHKSGANGNETLAKLCADGRAGQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDL 129

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
            +    +  LD +  G     +    +         P    K+       +  ++ +
Sbjct: 130 FSKNGEKTGLDYVATG--VPVFPSIRENGMY----QPLKGHKITKLAPAPQWLLDEI 180


>gi|291335468|gb|ADD95080.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C348]
          Length = 243

 Score = 67.6 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 7/99 (7%)

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
                        +D WI V  ++H          +    WSKQ S Y E   + +W +F
Sbjct: 6   EAMWAMPPEAADDYDIWITVGQSLHSVDD---TLLDPWDEWSKQSSKYKEGECHRRWLSF 62

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311
                        +   L   +G    +        D  
Sbjct: 63  SKAGGRGIG----SLFHLAKENGWQPDQTYKGLNVDDTL 97


>gi|301066074|ref|YP_003788097.1| prophage Lp3 protein 7-like protein [Lactobacillus casei str.
           Zhang]
 gi|300438481|gb|ADK18247.1| prophage Lp3 protein 7-like protein [Lactobacillus casei str.
           Zhang]
          Length = 278

 Score = 67.6 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 47/196 (23%), Gaps = 26/196 (13%)

Query: 13  AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67
              +GF + PL    + P      +++     E+  K     P    G         +  
Sbjct: 14  YQQHGFAVYPLAPATRTPINGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 69

Query: 68  FDID---SKDEKTANTFKDTFEI----LHGTPIVRIGQKPKILIPFRMNKEG----IKKK 116
           FDID     +     +              +  +       + I F   KE         
Sbjct: 70  FDIDMGHKSEANGNESLAKLSAEGRADQIPSTYIETTPNGGLHIFFTYPKELQLTSRSDL 129

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
            +    +  LD +  G     +    +         P    K+     + +  ++ + + 
Sbjct: 130 FSKNGEKTGLDYIATG--VPVFPSIRENGMY----QPLKGHKITKLAPVPQWLLDEIQRV 183

Query: 177 FQEITVPLVKDKKSII 192
                           
Sbjct: 184 SHPNPQLGGSTVYRGK 199


>gi|258509888|ref|YP_003172639.1| phage-related DNA replication protein [Lactobacillus rhamnosus GG]
 gi|257149815|emb|CAR88788.1| Phage-related protein, DNA replication [Lactobacillus rhamnosus GG]
 gi|259651150|dbj|BAI43312.1| hypothetical phage protein [Lactobacillus rhamnosus GG]
          Length = 275

 Score = 67.6 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 46/177 (25%), Gaps = 26/177 (14%)

Query: 13  AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67
              +GF + PL    + P      +++     E+  K     P    G         +  
Sbjct: 11  YQQHGFAVYPLAPETRTPLAGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 66

Query: 68  FDID---SKDEKTANTFKDTFEI----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116
           FDID          +T              +  +       + I F   KE         
Sbjct: 67  FDIDMGHKSGANGNDTLAKLSAEGRADQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDL 126

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
            +    +  LD +  G     +    +         P    K+     + +  ++ +
Sbjct: 127 FSKNGEKTGLDYIATG--VPVFPSIRENGMY----QPLKGHKITKLAPVPQWLLDEI 177


>gi|229821005|ref|YP_002882531.1| Bifunctional DNA primase/polymerase [Beutenbergia cavernae DSM
           12333]
 gi|229566918|gb|ACQ80769.1| Bifunctional DNA primase/polymerase [Beutenbergia cavernae DSM
           12333]
          Length = 206

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 3/97 (3%)

Query: 53  GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI-GQKPKILIPFRMNKE 111
             G   G      +  DID      A+      E     P  R+        + + M  +
Sbjct: 109 NVGLATGRAS-GFWVLDIDPAKGGAASIKALEAEHGALAPTRRVRTGSGGWHLYYAMPLD 167

Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148
           G   + +       +D+ G G Y VA      TK  Y
Sbjct: 168 GSDVRNSQGLVAPGIDVRGTGGYVVAPPSV-STKGAY 203


>gi|323139963|ref|ZP_08074982.1| hypothetical protein Met49242DRAFT_4370 [Methylocystis sp. ATCC
           49242]
 gi|322394781|gb|EFX97363.1| hypothetical protein Met49242DRAFT_4370 [Methylocystis sp. ATCC
           49242]
          Length = 176

 Score = 67.6 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 59/182 (32%), Gaps = 25/182 (13%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWE--EQLLSSEKIDKLPAC----GF 54
           M    + E A      GF   P+ LG K    +  W+  +  L  E +          G 
Sbjct: 1   MTARIFAEHAPLYRAAGFWPRPVSLGSKA-CHVRDWQKPDGELPPETLQSWLKSHCYLGI 59

Query: 55  GFVCGVGEQP---LYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNK 110
           G + G        L A DID       + +      L G  P  R G+K  ++   R+  
Sbjct: 60  GLLMGSPFPDGTTLGALDIDH------DAYTRVGHALLGDPPCCRFGRKGMVVFV-RVRG 112

Query: 111 EG----IKKKKTTESTQGHL-DILGCGQ-YFVAYNIHPKTKKEYTWTT-PPHRFKVEDTP 163
           E      + K       G + + L   +   V   IH +T + Y W             P
Sbjct: 113 EPRNLEFRVKGDVGKRFGKVAECLFSKKLCVVPPTIHRETGRPYRWVGQSLLDVDFNSLP 172

Query: 164 LL 165
           L+
Sbjct: 173 LV 174


>gi|84514718|ref|ZP_01002082.1| hypothetical protein SKA53_10869 [Loktanella vestfoldensis SKA53]
 gi|84511769|gb|EAQ08222.1| hypothetical protein SKA53_10869 [Loktanella vestfoldensis SKA53]
          Length = 454

 Score = 67.2 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 19/214 (8%)

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFG 526
           F D +     ++   D F   +   L    +   +  +      G+GKSTL  ++   FG
Sbjct: 110 FNDFIEYVIPNDAERDVFLDWLVWVLRYEAQKPAWAIMLYSEKQGTGKSTLAEVLIELFG 169

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
                                    +   L    +++     +     A  IK +   D 
Sbjct: 170 RLNTGRVN--------GVNKLIGRFNKEVLENKLVIVEEVEVKRGSPQANAIKSLVTEDS 221

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP---IANRDASF 643
           +         Y +        +  N         D   RR+ ++ FD        +D + 
Sbjct: 222 IMVEAKLMPVYVQQIHCAFL-MTTNHLPLWLEESD---RRFFILNFDHHGYANGGKDYNR 277

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
             KL     L+ KK   +GVK    + +  D+P+
Sbjct: 278 FTKLVGAVKLQIKKP--EGVKGIYDQLMRRDVPQ 309


>gi|228904575|ref|ZP_04068651.1| hypothetical protein bthur0014_57110 [Bacillus thuringiensis IBL
           4222]
 gi|228855056|gb|EEM99639.1| hypothetical protein bthur0014_57110 [Bacillus thuringiensis IBL
           4222]
          Length = 810

 Score = 67.2 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 73/549 (13%), Positives = 143/549 (26%), Gaps = 64/549 (11%)

Query: 31  QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFEIL 88
                W    +  EK  +    G GFV    +      D+D    D + +   +D    +
Sbjct: 5   NNRNTWSSFEMVVEKYKQGGYDGIGFVF-SKQDDYVGIDLDKCCVDGELSELARDIM-SI 62

Query: 89  HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148
             +          I I  +            +     L++    +YF             
Sbjct: 63  VPSYTEYSPSGNGIHIITKGKIPLRGPGTGKKVPSIGLEVYRHTRYFTFTGDSINNN--- 119

Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208
                      E+  +L ++ +E   K     +      K S   + + +    R + ++
Sbjct: 120 -----HVEESTENLKVLFQKYIEK--KEVPAASKIPSVSKGSNRSNLSNSELWERMFNSK 172

Query: 209 EITAFLSCFGEEFYNGSHDE-----------WIPVVMA-VHHETRGSSKGKEIARRW-SK 255
              A    F     NG H             W     A +    R S+  ++   +  S 
Sbjct: 173 NGGAIKDLFCGVLINGDHSSTDMALANHLAFWTDKDAAKMDTMFRESALMRDKWDKQHSS 232

Query: 256 QGSTYDEENFNYKWDTFDFEEIGD---------TAKKRSTFTSLFYHHGKLIPKGLLASR 306
            G TY E   +    +       +              S +  +     K+  K      
Sbjct: 233 DGLTYGEMTIDRAISSTHNSISNNNASNNKENEKILLPSPYKDINGALYKVEIKVKKDEI 292

Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
                  A    Y K         + +Y+        W+   + +T  +    ++ K ++
Sbjct: 293 EEQNIPVARHVPYLKRELCNIEKPQVYYE------LTWNNRGNNVTELVTAGSLATKREM 346

Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
             L+E+    N N+      +       N  E          ++   I  +     D   
Sbjct: 347 MPLAEKSFPVNDNNVKQLIDYFDKVLASNEIETGWMVERLGHIKNDCIHPLIEKGYDILP 406

Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486
                     DL   Q ++  +     K                 + +        + + 
Sbjct: 407 ---------ADLGDRQLLEAFQLKGTVK------------GWIDGVFNEIKSHPRALFFV 445

Query: 487 TRCVGMALLGGNKAQRFIH-IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
                   L   K   FI  + G   +GK+T M +    +G   +IN   S         
Sbjct: 446 LSSFASIFLHDLKIDPFIVELAGSTSTGKTTAMKIAASVWGTNQLINEFNSTKTSVERKS 505

Query: 546 AGKANPSLI 554
           +   +  L 
Sbjct: 506 SFLNSFPLY 514


>gi|269974626|gb|ACZ55147.1| bifunctional DNA primase/polymerase [Streptomyces sp. 36R-2-1B]
          Length = 361

 Score = 67.2 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 63/280 (22%), Gaps = 73/280 (26%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQ-----------------------RLGKWEEQLLSSEKI 46
           A+     G+ + PL  G K P                            +     + + I
Sbjct: 23  ARWCASQGWPVHPLAPGRKTPAANCPECRDRRHGPAGCPCPGEGRPCHGFHAATTNPQHI 82

Query: 47  DKL----PACGFGFVCGVGEQPLYAFDID-----------------SKDEKTANTFKDTF 85
           D      PA G G  CG     L   DID                   D          F
Sbjct: 83  DAWWTASPAAGVGVACGPA--DLVVIDIDAHAASVPHRSRLLPGIAIPDAVNLAGLASGF 140

Query: 86  EIL-------------HGTPIVRI-GQKPKILIPFRMN--KEGIKKKKT---TESTQGHL 126
           + L                  +R+      + + +     +   +         +    +
Sbjct: 141 DTLALLAAYRDQPNPADDETTLRVRTPSGGLHVWYSNPHRETRFRCSTGSSPKVALAWQV 200

Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVK 186
           D+   G Y +A          Y    P     V     L E     L +    I  P   
Sbjct: 201 DVRADGGYIIAPTTRTNQG-TYRAEGP-----VRRPAPLPEWLHHELVRTGHAIEPPAKP 254

Query: 187 D--KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
              +      ++       Q  +  I+    C       G
Sbjct: 255 PLARSQAPGRRSRKPAAAHQILDHLISQVAQCAAAPEGTG 294


>gi|225870194|ref|YP_002746141.1| phage protein [Streptococcus equi subsp. equi 4047]
 gi|225699598|emb|CAW93236.1| hypothetical phage protein [Streptococcus equi subsp. equi 4047]
          Length = 275

 Score = 67.2 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 47/189 (24%), Gaps = 16/189 (8%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRL---GKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           KE A      GF ++P+    K+P                +   + P             
Sbjct: 4   KEYALAYQKKGFSVLPISPTGKKPMIAFADKPPMTAQEIEDFWTQYPDSNIAVRT----D 59

Query: 64  PLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             +  DID         +  +    +++  T   +     K +  F+     +       
Sbjct: 60  KFFVIDIDLHGKANGFESLANWEHLDLITPTLQAKTASGGKHIFYFKHPDVSM---TQMI 116

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +D+      Y +           Y W       +       S + V  + + + +
Sbjct: 117 GFLPGVDVKAHLNNYVLVAPSKTPKG-VYAWDKDKS-KEDGTMVTASRKLVMAIKQEYNK 174

Query: 180 ITVPLVKDK 188
                  D 
Sbjct: 175 KNPGSDLDN 183


>gi|9634995|ref|NP_056711.1| gp271 [Streptococcus phage Sfi11]
 gi|7523555|gb|AAF63058.1|AF158600_12 gp271 [Streptococcus phage Sfi11]
 gi|7523585|gb|AAF63087.1|AF158601_15 gp271 [Streptococcus phage SFi18]
          Length = 271

 Score = 67.2 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 48/188 (25%), Gaps = 18/188 (9%)

Query: 4   MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVC 58
           M+  + A      G+ +IP+    K P     + ++   +   I +     P        
Sbjct: 1   MEMVDYAINYQRMGYSVIPISKNSKTPLIS--FADKPPMTENDIRRVWRDNPDANIALRT 58

Query: 59  GVGEQPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
                  +  D+D   D       ++     L    +  I       I  + +       
Sbjct: 59  ----DTFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHIYLKKDPNHP--I 112

Query: 117 KTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
                    +DI      Y +    +  +K  Y W T                 ++ L K
Sbjct: 113 SQNIGMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQK 170

Query: 176 FFQEITVP 183
              E    
Sbjct: 171 MKPEPLSY 178


>gi|220926441|ref|YP_002501743.1| bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
           2060]
 gi|219951048|gb|ACL61440.1| Bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
           2060]
          Length = 201

 Score = 67.2 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 41/158 (25%), Gaps = 30/158 (18%)

Query: 8   EQAKQAIHNGFKLIPLRL-----GDKRP-------------QRLGKWEEQLLSSEKIDK- 48
           E A      GF + P          KRP              + G + +     E+I + 
Sbjct: 13  EHALAWARRGFAVFPCNPSPTGEDSKRPLVPRDKDEQGKPIPKTGGFYKATRDEEQIRRL 72

Query: 49  ---LPACGFGFVCGVGEQPLYAFDIDSK----DEKTANTFKDTFEILHGTPI--VRIGQK 99
               P    G   G      +A D D      D      ++         P     +   
Sbjct: 73  WRRWPKAMIGLRMGHDA-GTFALDPDVVKKPGDADGLAAWRQLAAEHGDVPATHTHVTPS 131

Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137
               + FR  ++              +++ G G Y  A
Sbjct: 132 GGRHLLFRYPEDRSITNA-EGDLPKGINVRGEGGYVAA 168


>gi|317152198|ref|YP_004120246.1| hypothetical protein Daes_0479 [Desulfovibrio aespoeensis Aspo-2]
 gi|316942449|gb|ADU61500.1| hypothetical protein Daes_0479 [Desulfovibrio aespoeensis Aspo-2]
          Length = 493

 Score = 67.2 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 77/313 (24%), Gaps = 24/313 (7%)

Query: 461 VEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517
            E       +  +   +   +EE   Y              K    + ++G   +GKST+
Sbjct: 138 PEKGDCSLIIAHLRDIWCNGNEEQFTYLITWFAHMFQYPWEKPNVALVVKGGKAAGKSTV 197

Query: 518 MNLIKY-AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
            + I     G  Y        ++                L    +V        D+    
Sbjct: 198 FDGILLPILGTLYSKMTHQEQLVGKFNRHT---------LYKLLLVAEEAFWAGDKSAEG 248

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
            +K M     + A     + +         F+     +     D+   RR+  I      
Sbjct: 249 PLKAMITDKPLQAEPKGVDAFDTYTYYRIAFVSNETRVVPATKDE---RRFFAIR-VSSD 304

Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
             RD  +   L  +        F+  +  +      V  P       E+  +    ++ W
Sbjct: 305 KMRDVGYFNALWKQIENGGVAAFMDYLMTWEVDRNLVFSPPRTDVLTEDILENLSAFERW 364

Query: 697 IDDCCDIGENLW-------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
             +     E+           +  +   Y  + ++              T     + F  
Sbjct: 365 AFEFLHADEDDDLIEWDAPVTTFDIYDHYKRWLKEAKELGVYVSRAEIGTQTRMTQEFKR 424

Query: 750 GIKREKIEKEWKS 762
                  +   K 
Sbjct: 425 LFGFTLAKAGGKR 437


>gi|258538879|ref|YP_003173378.1| phage-related DNA replication protein [Lactobacillus rhamnosus Lc
           705]
 gi|257150555|emb|CAR89527.1| Phage-related protein, DNA replication [Lactobacillus rhamnosus Lc
           705]
          Length = 278

 Score = 66.8 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 45/177 (25%), Gaps = 26/177 (14%)

Query: 13  AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67
              +GF + PL    + P      +++     E+  K     P    G         +  
Sbjct: 14  YQQHGFAVYPLAPATRTPINGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 69

Query: 68  FDID---SKDEKTANTFKDTFEI----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116
           FDID     +     +              +  +       + I F   KE         
Sbjct: 70  FDIDMGHKSEANGNESLAKLCADGRAGQIPSSYIETTPNGGLHIFFTYPKELKLTSRSDL 129

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
            +    +  LD +  G     +    +         P    K+       +  ++ +
Sbjct: 130 FSKNGEKTGLDYVATG--VPVFPSIRENGMY----QPLKGHKITKLAPAPQWLLDEI 180


>gi|254384015|ref|ZP_04999361.1| bifunctional DNA primase/polymerase [Streptomyces sp. Mg1]
 gi|194342906|gb|EDX23872.1| bifunctional DNA primase/polymerase [Streptomyces sp. Mg1]
          Length = 361

 Score = 66.8 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 57/252 (22%), Gaps = 73/252 (28%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRL-----------------------GKWEEQLLSSE 44
           + A      G+ + PL  G K P                            +        
Sbjct: 19  DVASWLAGRGYPVHPLAPGTKTPAPNCPDCRGGGHPAQDCPCHALGRWCHGFHAATTDLR 78

Query: 45  KIDKL----PACGFGFVCGVGEQPLYAFDID-----------------SKDEKTANTFKD 83
            +       P  G G  CG     L   D+D                   D       + 
Sbjct: 79  TLRAWWETEPGFGIGVACGPA--GLVVIDVDAHAEQLPDRQRLLPGIPIDDRVDLTGLQS 136

Query: 84  TFEILHGTPIVRI--------------GQKPKILIPFRMNKEGIKKKKTTES-----TQG 124
            F+ L      R                    + I +R  + G + + ++ S        
Sbjct: 137 GFDTLALLAAYRSRPNPCEDTSTLRVRTPSGGMHIWYRAPRGGPRLRCSSGSSPKVALAW 196

Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP-LLSEEDVEYLFKFFQEITVP 183
            +D+   G Y VA                         P  L    +  L +    +  P
Sbjct: 197 QVDVRAVGGYIVAPTTRTAAGVY-------EPLPGARVPAALPLWLIAELARTGHTVEAP 249

Query: 184 LVKDKKSIIPSK 195
           +      + PS+
Sbjct: 250 VAPSDAPVTPSR 261


>gi|239905583|ref|YP_002952322.1| hypothetical protein DMR_09450 [Desulfovibrio magneticus RS-1]
 gi|239795447|dbj|BAH74436.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 665

 Score = 66.8 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 28/200 (14%)

Query: 14  IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSK 73
           + NG++       +KRP     +                  G  CG     +   D+D+ 
Sbjct: 65  VENGWQR---WCREKRPFDQANFSTDRA-------------GIACGPAS-GVLVLDVDNH 107

Query: 74  DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQ 133
               A   +   +      +            +        ++ +  S +G  +I G G 
Sbjct: 108 HLFEAWIQEKHPDEPLPVTLKVKTGGHGERFHYYFQYPSGDEQYSCRSVKGIFEIRGIGG 167

Query: 134 YFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
             +     HP+T+K Y +        VE  P++      +L +  ++         +   
Sbjct: 168 QILCPGSLHPETRKPYIF--------VEIAPIMPAPL--WLLEMSKKSYGRKKDHDEQSP 217

Query: 193 PSKTWTNNNNRQYTNREITA 212
           P      +           +
Sbjct: 218 PEGIRKKHILEIDLVDTFLS 237


>gi|255320906|ref|ZP_05362080.1| bifunctional DNA primase/polymerase [Acinetobacter radioresistens
           SK82]
 gi|255302075|gb|EET81318.1| bifunctional DNA primase/polymerase [Acinetobacter radioresistens
           SK82]
          Length = 587

 Score = 66.8 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/526 (13%), Positives = 162/526 (30%), Gaps = 51/526 (9%)

Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF--SDAYNKAMFSIYKKGHFLYTAD 329
           F  E     A            +  ++ KG        +D   + + + +     L   +
Sbjct: 34  FSPEPPEKPANNFQGQDLAESENLVVVEKGDAGISTENTDLSEEELLAKWLARFCLIEGE 93

Query: 330 TKAWYKKDKNNVYI---------------WSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
           T  W +  K                    W+  L + T +  +    +++     ++E  
Sbjct: 94  TNIWDEYGKKIWKKSAFTTMLGGKKVFDQWNGHLHRKTITRDDVDGRLEDGGHKKAKEMI 153

Query: 375 DNNKNSKSPRFWFNTDYRR---QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
           D     +  +  ++T  R     +V +++ A +    +++     I  + L      +  
Sbjct: 154 DRFIMLEGKKACWDTFRRELVGTDVMKDNWAGAYDLWVKSKEKRMIWHENLVFDPT-MKT 212

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-MDYFTRCV 490
           ++G ++   G  +     L             E     ++L+     +E    ++  + +
Sbjct: 213 KEGQINTYDGMII--LPLLDTNNQMLGAGEAFESCIPIINLLKFLCGNENNAYEWILKWL 270

Query: 491 GMALL--GGNKAQRFIHIRGVGGSGKSTLMNL-IKYAFGNQYVINAEASDIMQNRPPEAG 547
              L   G       +    V GSGKS      +   +G +Y +    + +       A 
Sbjct: 271 AYPLQHPGAKMNTSILMCSAVQGSGKSLFFEKVMTRIYGEKYSVTLGQNGLESIYTDWAE 330

Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
           +    L  L           N++       IK M  G+ +     + + YS++      F
Sbjct: 331 R---KLYCLFEEIFN-----NKSKFGMMGLIKHMITGEKIRIEKKFMSGYSQNNHINCVF 382

Query: 608 IVPNKHL-FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
           +        +   D    RR++V+  ++ + + D     +L  +   +A   F   +   
Sbjct: 383 LSNEVQPLAIEERD----RRFLVLEPNQKLND-DLKKHIELCLEPDSQAISAFYTYLLNL 437

Query: 667 ISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE-----SHSLAKSYSE 720
                +    P +    ++  + G   ++ ++DD    G  L        S  L  +Y E
Sbjct: 438 DLTDFNEYTEPPMTKAKQKIIQFGLPGWKLFLDDW--RGGYLKYPFVCCLSDDLYTAYRE 495

Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
           +  +     +   S + + L   ++    G  R             
Sbjct: 496 WCHKNGE--KIIASNKFLNLVASERVVAKGHGRIYESVLNGPGTGY 539


>gi|312873799|ref|ZP_07733843.1| bifunctional DNA primase/polymerase, N-terminal domain protein
           [Lactobacillus iners LEAF 2052A-d]
 gi|311090680|gb|EFQ49080.1| bifunctional DNA primase/polymerase, N-terminal domain protein
           [Lactobacillus iners LEAF 2052A-d]
          Length = 264

 Score = 66.8 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 45/175 (25%), Gaps = 22/175 (12%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEE-QLLSSEKID----KLPACGFGFVCGVGEQ 63
            A      GF +IP+    KRP    K+     L+ E+I     K P             
Sbjct: 8   FAIAYAKKGFSVIPISPESKRPLI--KFANLPPLTVEEITALWCKYPTANIALKT----D 61

Query: 64  PLYAFDIDSKDEKTANTFKDT-FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
                DID  +     + K           +        +   +R  K    K       
Sbjct: 62  KFIVLDIDRHEIDGFESIKALHRPDWFLNTLSEKTAHNGLHFFYRKPKNM--KMTQVIGI 119

Query: 123 QGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
              +D+      Y V           Y W        V       ++ +E++   
Sbjct: 120 LPGVDLKANKNNYVVVAPSVFGYG-YYKWLNHLPMKDV------PKDMLEWIKSK 167


>gi|190151436|ref|YP_001974347.1| putative replication protein [Streptococcus phage PH15]
 gi|190014430|emb|CAQ57816.1| hypothetical protein [Streptococcus phage PH15]
          Length = 273

 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 78/283 (27%), Gaps = 27/283 (9%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-----IDKLPACGFG 55
           MP M  KE A Q    GF +IP+   +K P     + ++   S        D  P     
Sbjct: 1   MPSM--KEYALQYQKLGFSVIPINPKNKMPLI--DFADKPPMSASEIENFWDGFPNANIA 56

Query: 56  FVCGVGEQPLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEG 112
                     +  DID         + K+    +++  T   +     K L  F+ + E 
Sbjct: 57  LRT----TNFFVIDIDKHGKSNGFESLKNWEHLDLIEPTLQAKTASGGKHLFYFKRDDEP 112

Query: 113 IKKKKTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
                        +DI      Y +         + Y W     + K   T +    D+ 
Sbjct: 113 ---ITQMIGFLAGVDIKAHENNYVLVAPSATDKGQ-YEW--DLEKSKEGGTIVTPSRDLI 166

Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
              K     T     D    + S    +    +    ++   +         G  ++ + 
Sbjct: 167 RAIKRQYGETHGYKYDGTDGLRSLARRSYQRDRTQTTDLFETI--ALGFGDEGGRNDKLA 224

Query: 232 --VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
             V   ++         K      +   +   E+      ++ 
Sbjct: 225 SFVGGLLYRAVDDEVVVKLAQLANANSQNPLPEKELMRTVESM 267


>gi|149022008|ref|ZP_01835970.1| phage protein [Streptococcus pneumoniae SP23-BS72]
 gi|147929852|gb|EDK80841.1| phage protein [Streptococcus pneumoniae SP23-BS72]
          Length = 273

 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 72/281 (25%), Gaps = 23/281 (8%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLLSSEK-IDKLPACGFGFV 57
           MP M  KE A Q    GF +IP+   +K P      K        E   D  P       
Sbjct: 1   MPSM--KEYALQYQKLGFSVIPINPKNKMPLIEFADKPAMTPSEIENFWDGYPNANIALK 58

Query: 58  CGVGEQPLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIK 114
                   +  DID         + K      ++  T   +     K L  F+   E   
Sbjct: 59  T----TNFFVIDIDKHGKSNGFESLKKWKHLNLIEPTLQAKTASGGKHLFYFKREDEP-- 112

Query: 115 KKKTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
                      +DI      Y +         + Y W       +       S+  ++ +
Sbjct: 113 -ITQMIGFLPGVDIKAHENNYVLVAPSATDKGQ-YEW-DLEKSKEGGTMVTPSKYLIQSI 169

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-- 231
            K +                 +     ++ +   +    F +        G  ++ +   
Sbjct: 170 KKQY---GETHGYKYDGKDGLRDLVRRSHTRDRTQTTDLFETIALGFGDEGGRNDKLAKF 226

Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
           V   ++         +      +   +   E+      ++ 
Sbjct: 227 VGGLLYRAVDDGVVVQLARLANANSPTPLPEKEMMRTIESM 267


>gi|220921973|ref|YP_002497274.1| bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
           2060]
 gi|219946579|gb|ACL56971.1| Bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
           2060]
          Length = 201

 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 41/158 (25%), Gaps = 30/158 (18%)

Query: 8   EQAKQAIHNGFKLIPLRL-----GDKRP-------------QRLGKWEEQLLSSEKIDK- 48
           E A      GF + P          KRP              + G + +     E+I + 
Sbjct: 13  EHALAWARRGFAVFPCNPSPTGEDSKRPLVPRDKDEQGKPIPKTGGFYKATRDEEQIRRL 72

Query: 49  ---LPACGFGFVCGVGEQPLYAFDIDSK----DEKTANTFKDTFEILHGTPI--VRIGQK 99
               P    G   G      +A D D      D      ++         P     +   
Sbjct: 73  WRRWPKAMIGLRMGHDA-GTFALDPDVVKKPGDADGLAVWRRLAAEHGDVPATHTHVTPS 131

Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137
               + FR  ++              +++ G G Y  A
Sbjct: 132 GGRHLLFRYPEDRSITNA-EGDLPKGINVRGEGGYVAA 168


>gi|123231941|ref|XP_001286346.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121851703|gb|EAX73416.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 263

 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 79/272 (29%), Gaps = 35/272 (12%)

Query: 483 MDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIM 539
           + Y        L     K +  + I G  G+GK+T   +++     G          +I 
Sbjct: 3   ISYVW--FANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENIC 60

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
                     N S+  +       +   +    +N+  +K +           Y +    
Sbjct: 61  GKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVC 113

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
              +    +  N         D   RRY+V+        +D  +   L    T +     
Sbjct: 114 ENVANFIMVSNNSVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHL 169

Query: 660 LKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHS 713
                       +   IP    + ++   +   +    +ID    +C D          S
Sbjct: 170 FSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RS 219

Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
           L  SY +Y ++   Y     S RT   N+K  
Sbjct: 220 LYDSYKQYCQE---YGYMAASKRTFLANVKNL 248


>gi|11467844|ref|NP_050895.1| hypothetical protein NeolCp090 [Nephroselmis olivacea]
 gi|11467901|ref|NP_050952.1| hypothetical protein NeolCp147 [Nephroselmis olivacea]
 gi|5880773|gb|AAD54866.1|AF137379_89 unknown [Nephroselmis olivacea]
 gi|5880830|gb|AAD54923.1|AF137379_146 unknown [Nephroselmis olivacea]
          Length = 389

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 16/198 (8%)

Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-----ESEEVMDYFTRCVGMALLG 496
           Q + P+ +                     D                ++         L  
Sbjct: 180 QTIDPSSDHNFMYQVPLRLGPLNQLPPLTDRFKEALIRLVGPDPADLNRLRLFFHHCLTY 239

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
              +     + G  G+GKSTL  ++    G         +++          A  +L   
Sbjct: 240 QPGSNIAFLLSGDQGTGKSTLEKIVTKLLGEDRCHAMRLAEL------HNESARTALRNA 293

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
               +  + E           +K +TG D ++ ++ Y   + +        ++ NK    
Sbjct: 294 RVLFVNEVYELETGTPAFE-ILKTLTGRDLVSNKVLYV-GFFKFTFRGVVVLLSNKPEKD 351

Query: 617 RNP---DDAWWRRYIVIP 631
                 D A   R I IP
Sbjct: 352 LGSGFADFAMRDRVIEIP 369


>gi|148990199|ref|ZP_01821430.1| phage protein [Streptococcus pneumoniae SP6-BS73]
 gi|147924466|gb|EDK75555.1| phage protein [Streptococcus pneumoniae SP6-BS73]
          Length = 270

 Score = 66.1 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 70/275 (25%), Gaps = 21/275 (7%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLLSSEK-IDKLPACGFGFVCGVGEQ 63
           KE A Q    GF +IP+   +K P      K        E   D  P             
Sbjct: 2   KEYALQYQKLGFSVIPINPKNKMPLIDFADKPAMTPSEIENFWDGYPNANIALKT----T 57

Query: 64  PLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             +  DID         + K      ++  T   +     K L  F+   E         
Sbjct: 58  NFFVIDIDKHGKSNGFESLKKWKHLNLIEPTLQAKTASGGKHLFYFKREDEP---ITQMI 114

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +DI      Y +         + Y W       +       S++ ++ + K +  
Sbjct: 115 GFLPGVDIKAHENNYVLVAPSATDKGQ-YEW-DLEKSKEGGTMVTPSKDLIQSIKKQY-- 170

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237
                          +     ++ +   +    F +        G  ++ +   V   ++
Sbjct: 171 -GETHGYKYDGKDGLRDLVRRSHTRDRTQTTDLFETIALGFGDEGGRNDKLAKFVGGLLY 229

Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
                    +      +   +   E+      ++ 
Sbjct: 230 RAVDDGVVVQLARLANANSPNPLPEKEMMRTIESM 264


>gi|9632973|ref|NP_050001.1| putative replication protein [Streptococcus phage Sfi21]
 gi|5524054|gb|AAD44106.1|AF115103_36 orf271 gp [Streptococcus phage Sfi21]
 gi|2352439|gb|AAC72437.1| orf271 [Streptococcus phage Sfi21]
          Length = 271

 Score = 66.1 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 48/188 (25%), Gaps = 18/188 (9%)

Query: 4   MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVC 58
           M+  + A      G+ +IP+    K P     + ++   +   I +     P        
Sbjct: 1   MEMVDYAINYQRMGYSVIPISKNGKTPLIS--FADKPPMTENDIRRVWRDNPDANIALKT 58

Query: 59  GVGEQPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
                  +  D+D   D       ++     L    +  I       I  + +       
Sbjct: 59  ----DTFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHIYLKKDPNHP--I 112

Query: 117 KTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
                    +DI      Y +    +  +K  Y W T                 ++ L K
Sbjct: 113 SQNIGMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQK 170

Query: 176 FFQEITVP 183
              E    
Sbjct: 171 MKPEPLSY 178


>gi|23455860|ref|NP_695090.1| hypothetical protein O1205p12 [Streptococcus phage O1205]
 gi|2444092|gb|AAC79528.1| ORF12 [Streptococcus phage O1205]
          Length = 269

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 46/184 (25%), Gaps = 18/184 (9%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVCGVGE 62
           + A      G+ +IP+    K P     + ++   +   I +     P            
Sbjct: 3   DYAINYQRMGYSVIPISKNGKTPLIS--FADKPPMTENDIRRVWRDNPDANIALKT---- 56

Query: 63  QPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
              +  D+D   D       ++     L    +  I       I  + +           
Sbjct: 57  DTFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHIYLKKDPNHP--ISQNI 114

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +DI      Y +    +  +K  Y W T                 ++ L K   E
Sbjct: 115 GMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQKMKPE 172

Query: 180 ITVP 183
               
Sbjct: 173 PLSY 176


>gi|260654750|ref|ZP_05860238.1| ATPase, RecA family [Jonquetella anthropi E3_33 E1]
 gi|260630465|gb|EEX48659.1| ATPase, RecA family [Jonquetella anthropi E3_33 E1]
          Length = 691

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 8/117 (6%)

Query: 216 CFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE 275
              +     S+++WI V MA+ HE      G ++   WS+  S Y E     KW  F+  
Sbjct: 6   DALKFISPDSYEDWIAVGMALKHE----GLGLDVWDAWSRDSSKYREGECAGKWAGFNET 61

Query: 276 EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332
             G       T  +L     +        +   D     +   Y      Y  + + 
Sbjct: 62  HGGA----PVTGGTLIAMAKRNGYAPSSQAFGWDDEVAEVGRDYHIVDAAYVGEERV 114


>gi|325002049|ref|ZP_08123161.1| hypothetical protein PseP1_24956 [Pseudonocardia sp. P1]
          Length = 739

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 69/259 (26%), Gaps = 19/259 (7%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACG-FGFVCGVGEQ 63
           ++   Q    G+   PL    K+  P+ +     + ++ +++ +    G +G +      
Sbjct: 10  RKVIDQYFARGWNPFPLPDRKKKTPPEGVTGRGAKPVTRDQVSRWYNDGAYGNLGVAIPS 69

Query: 64  PLYAFDIDSKDE---------KTANTFKDTFEILHGTPIVRIGQKP--KILIPFRMNKEG 112
            +   D+D   +               +  +  L  T  V   +         F +    
Sbjct: 70  NVIGIDVDDYTKPNGTVYEGAALLAELEAEYGKLPVTYTVSRIRDHQRSGTRFFVVPGAY 129

Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRF-----KVEDTPLLSE 167
                          I    +Y V          EY   +P         +  D P L E
Sbjct: 130 DPSDFVPNIQDSIQLIRPNYRYSVMAPSVHPEGDEYVLYSPDGNTAEYLPRPADLPELPE 189

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
               +L    +      V   +      +       +        +L    +    G HD
Sbjct: 190 SWCVFLDSPQERRGRVEVTSAELTEFLASLREGIPDETVQDWTITYLQQLQDTKPGGRHD 249

Query: 228 EWIPVVMAVHHETRGSSKG 246
             +  V A+ +  R    G
Sbjct: 250 AAMRQVTALLYLAREGHPG 268


>gi|258646909|ref|ZP_05734378.1| virulence-associated protein E [Dialister invisus DSM 15470]
 gi|260404351|gb|EEW97898.1| virulence-associated protein E [Dialister invisus DSM 15470]
          Length = 715

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 72/308 (23%), Gaps = 32/308 (10%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPL 65
           WK Q +   +      P   G  +      W     +          G GF  G    P 
Sbjct: 21  WKFQKRGGKNTKIPYNPKTGGMAKSNSPETWASFDTAVNAFSGGTYDGIGFELG--SSPF 78

Query: 66  YAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
              DID   +        +   +       +    K   +I                  +
Sbjct: 79  VGIDIDYCIEGGVVNKEAQKIIDDFASYTELSPSCKGIHIIV------KADIADGRGRRK 132

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
           G+++I   G++F          K+ +      +       L++  D +   +   +   P
Sbjct: 133 GNIEIYPAGRFFTVTGNVIPGYKKISTEGKALQ------ALIAIVDAKTPLQELPQN--P 184

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE--------WIPVVMA 235
           L+   + +          + Q    E             + S  +        W      
Sbjct: 185 LIDPPEMLDSELINKIRQSGQGAKFEALYDRGDLSAYGGDDSAADQALMNILAWWTNGDM 244

Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295
           +  E   +S       +W+ +   Y +          +             +      + 
Sbjct: 245 LAMERMFTSSALGKREKWANR-QDYRDRTIQEAIRGMNGNGY-----DPVKYKEQKQLNK 298

Query: 296 KLIPKGLL 303
             I     
Sbjct: 299 MKIDAENP 306


>gi|321157016|emb|CBW39004.1| Putative phage bifunctional primase/polymerase protein
           [Streptococcus phage 040922]
          Length = 270

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 70/275 (25%), Gaps = 21/275 (7%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLLSSEK-IDKLPACGFGFVCGVGEQ 63
           KE A Q    GF +IP+   +K P      K        E   D  P             
Sbjct: 2   KEYALQYQKLGFSVIPINPKNKMPLIDFADKLAMTPSEIENFWDGYPNANIALKT----T 57

Query: 64  PLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             +  DID         + K      ++  T   +     K L  F+   E         
Sbjct: 58  NFFVIDIDKHGKSNGFESLKKWKHLNLIEPTLQAKTASGGKHLFYFKREDEP---ITQMI 114

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +DI      Y +         + Y W       +       S++ ++ + K +  
Sbjct: 115 GFLPGVDIKAHENNYVLVAPSATDKGQ-YEW-DLEKSKEGGTMVTPSKDLIQSIKKQY-- 170

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237
                          +     ++ +   +    F +        G  ++ +   V   ++
Sbjct: 171 -GETHGYKYDGKDGLRDLVRRSHTRDRTQTTDLFETIALGFGDEGGRNDKLAKFVGGLLY 229

Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
                    +      +   +   E+      ++ 
Sbjct: 230 RAVDDGVVVQLARLANANSPNPLPEKEMMRTIESM 264


>gi|239905623|ref|YP_002952362.1| hypothetical protein DMR_09850 [Desulfovibrio magneticus RS-1]
 gi|239795487|dbj|BAH74476.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 680

 Score = 65.7 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 83/272 (30%), Gaps = 27/272 (9%)

Query: 14  IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSK 73
           + NG++       +KRP     +                  G  CG     +   D+D+ 
Sbjct: 65  VENGWQR---WCREKRPFDQANFSTDRA-------------GIACGPAS-GVLVLDVDNH 107

Query: 74  DEKTANTFKDT-FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132
               A   ++   E L  T  V+ G   +    +     G ++     S +G  DI G G
Sbjct: 108 HLFEAWIQENHPDEPLPVTLKVKTGGHGERFHLYFQYPLGDEQYFCR-SVKGTFDIRGIG 166

Query: 133 QYFVAYNI-HPKTKKEYTWTTPPHRFKVE-DTPLLSEEDVEYLFKFFQEITVPLVKDKKS 190
              +     HP+T+K Y                 +S++        +++        K  
Sbjct: 167 GQVLCPGSLHPETRKPYVVVENVSIAPAPMWLLEMSKKSHGGKKNHYEQNPPESTSKKHI 226

Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW-IPVVMAVHHETRGSSKGKEI 249
           +  +   T  +N   ++      L+ F +   +     W + + +   +    + +    
Sbjct: 227 LEIAPVDTFLSNLNLSDDTKQKILTRFPQGQRSEP--SWSVLLGLLNTNVDEKTIRLIYQ 284

Query: 250 AR---RWSKQGSTYDEENFNYKWDTFDFEEIG 278
           +      S++   + E        T     IG
Sbjct: 285 SYPIGEKSREKPDWFEREIEAAKKTIAQNPIG 316


>gi|123189481|ref|XP_001282070.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121838350|gb|EAX69140.1| hypothetical protein TVAG_551650 [Trichomonas vaginalis G3]
          Length = 258

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 24/254 (9%)

Query: 496 GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553
              K +  + I G  G+GK+T   +++     G          +I           N S+
Sbjct: 10  PSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSSI 62

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             +       +   +    +N+  +K +           Y +       +    +  N  
Sbjct: 63  ENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 122

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
                  D   RRY+V+        +D  +   L    T +                 + 
Sbjct: 123 PMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 178

Query: 674 D-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
             IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y   
Sbjct: 179 RQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYM 229

Query: 732 RISTRTVTLNLKQK 745
             S RT   N+K  
Sbjct: 230 TASKRTFLANVKSL 243


>gi|9632451|ref|NP_049423.1| hypothetical protein DT1p34 [Streptococcus phage DT1]
 gi|4530171|gb|AAD21911.1| unknown [Streptococcus phage DT1]
          Length = 271

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 50/207 (24%), Gaps = 18/207 (8%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVCGVGE 62
           + A      G+ +IP+    K P     + ++   +   I +     P            
Sbjct: 5   DYAINYQRMGYSVIPISKNGKTPLIS--FADKPPMTENDIRRVWRDNPDANIALKT---- 58

Query: 63  QPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
              +  D+D   D       ++     L    +  I       I  + +           
Sbjct: 59  DTFFVIDVDMHGDVDGLTNLRNWEHARLIPKTLQAITPSGGRHIYLKKDPNHP--ISQNI 116

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +DI      Y +    +  +K  Y W T                 ++ L K   E
Sbjct: 117 GMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQKMKPE 174

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYT 206
                V    S     T T        
Sbjct: 175 PLNYEVSSFASDSVRSTKTTKLFESIL 201


>gi|307293588|ref|ZP_07573432.1| Bifunctional DNA primase/polymerase [Sphingobium chlorophenolicum
           L-1]
 gi|306879739|gb|EFN10956.1| Bifunctional DNA primase/polymerase [Sphingobium chlorophenolicum
           L-1]
          Length = 574

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/331 (10%), Positives = 80/331 (24%), Gaps = 37/331 (11%)

Query: 10  AKQAIHNGFKLIPLRLGDKRP---QRLGKWEEQLLSSEKIDKLPACG--FGFVCGVGEQP 64
           A+ AI  G K++      K P              S +++ +             + +  
Sbjct: 16  AEHAIAAGMKVLAAEPRAKNPDVRFSPNGLNSATASLKEVKRWLKTDDQINLAGALKDTG 75

Query: 65  LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK-PKILIPFRMNKEGIKKKKTTESTQ 123
           + A D+D  + +           +      R  +        +R +           S  
Sbjct: 76  ICAVDVDGPEGE------KALRRITKVSKTRKTKTRNGSHRFYRYDGNLGGSVIKLASDL 129

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
             +       Y +           Y                +S E V+ +    +     
Sbjct: 130 DFI----MSGYVMLPGSRHPDGGLYKSDDFSLP-----IADMSPELVKAIRNHRRPRKKS 180

Query: 184 LVKDKKSIIPSKTWTNNN---------NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
               K      K   N++          + Y    I   L  F + +          V  
Sbjct: 181 PEPSKTEARIVKGKRNDSLASIAGSLRRQGYEEEVILTMLDAFNQHYCRPPLRSQ-EVER 239

Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH 294
             H  +R + + +E+    S         +  + W  +      +  +        F   
Sbjct: 240 IAHSISRYAPEHEELFGLMS----NVTPRDVAFLWKPYFVRGATNLLEGDPNVGKTFLLC 295

Query: 295 G--KLIPKGLLASRFSDAYNKAMFSIYKKGH 323
                I  G      ++A  + +  +  +  
Sbjct: 296 KLAAAISSGTPLPGQTEATAQNVLFMSAEDD 326


>gi|9632925|ref|NP_049954.1| putative replication protein [Streptococcus phage Sfi19]
 gi|5524020|gb|AAD44073.1|AF115102_32 orf271 gp [Streptococcus phage Sfi19]
 gi|455527|emb|CAA54617.1| unnamed protein product [Streptococcus phage SFi18]
 gi|4049996|gb|AAC97923.1| gp271 [Streptococcus phage Sfi19]
          Length = 271

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 48/188 (25%), Gaps = 18/188 (9%)

Query: 4   MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVC 58
           M+  + A      G+ +IP+    K P     + ++   +   I +     P        
Sbjct: 1   MEMVDYAINYQRMGYSVIPISNNSKTPLIS--FADKPPMTENDIRRVWRDNPDANIALRT 58

Query: 59  GVGEQPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
                  +  D+D   D       ++     L    +  I       I  + +       
Sbjct: 59  ----DTFFVIDVDMHGDVDGLTNLRNWEHARLIPQTLQAITPSGGRHIYLKKDPNHP--I 112

Query: 117 KTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
                    +DI      Y +    +  +K  Y W T                 ++ L K
Sbjct: 113 SQNIGMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQK 170

Query: 176 FFQEITVP 183
              E    
Sbjct: 171 MKPEPLSY 178


>gi|123134482|ref|XP_001277107.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121820031|gb|EAX64177.1| hypothetical protein TVAG_571570 [Trichomonas vaginalis G3]
          Length = 260

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 79/266 (29%), Gaps = 26/266 (9%)

Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQN 541
           Y    V   L     K +  + I G  G+GK+T   +++     G          +I   
Sbjct: 1   YLM-WVANILQHPSAKIETALIIIGNQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGK 59

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
                   N S+  +       +   +    +N+  +K +           Y +      
Sbjct: 60  F-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCEN 112

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661
            +    +  N         D   RRY+V+        +D  +   L    T +       
Sbjct: 113 VANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFS 168

Query: 662 GVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYS 719
                     +   IP    + ++   +   +    +ID+     + +  +  SL   Y 
Sbjct: 169 YFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYK 222

Query: 720 EYREQELNYDRKRISTRTVTLNLKQK 745
           +Y ++   Y     S RT   N+K  
Sbjct: 223 QYCQE---YGYMAASKRTFLANVKSL 245


>gi|300772203|ref|ZP_07082073.1| N- superfamily bifunctional DNA primase/polymerase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760506|gb|EFK57332.1| N- superfamily bifunctional DNA primase/polymerase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 859

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 87/709 (12%), Positives = 192/709 (27%), Gaps = 116/709 (16%)

Query: 9   QAKQAIHNGFKLIPLRLGDK--RPQR------LGKWEEQLLSS----EKIDKLPACGFGF 56
           Q KQ I +G  LIP+R  D+  RP +        +++ + +      + +          
Sbjct: 13  QIKQLIDDGCSLIPVRDKDEGERPAKTPCISAWKQYQTERMDEGALWQAMQTYGTSAVAV 72

Query: 57  VCGVGEQPLYAFDIDSK-DEKTANTFKDTFEILHG--TPIVRI--GQKPKILIPFRMNKE 111
           V G     L   DIDSK +           E L+    PI+RI         I +R+   
Sbjct: 73  VTGEVSGRLELIDIDSKYEPGIEALVLKDIEKLYPDLYPILRIHATPSGGRHIIYRIEDG 132

Query: 112 GIK------------------KKKTTESTQGHL---DILGCGQYFVAYNIHPKTKKEYTW 150
            ++                  +KK  +     +   +  G G YF+              
Sbjct: 133 DVEGNQKLAGREATEAELQDQRKKGRKRLSTQVNFLETRGEGGYFLYPPS---------- 182

Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210
                  +    P L+ E+   +    +     +  +       K         + +   
Sbjct: 183 -MGYSVIQDVPIPQLTWEERCGIINLCRSYNRLVKIEPTPKPTKKEDDWYTTNPFEDFNE 241

Query: 211 TAFLSCFGEEFYN------GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-----T 259
                   EEF             W          +   ++ K +   ++          
Sbjct: 242 NCDPVQLIEEFGWKRTKHFSDRFFWFTRPGKDKGVSASFNRSKRVFYIFTSSTELEPTRG 301

Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG------LLASRFSDAYNK 313
           Y+  +   +      ++       +S +  +     + + K        + S FSD    
Sbjct: 302 YNPASILAELRHGGNKKEAYHDLVKSGYGKVKRQIEQAVIKKAAIKGTGIPSNFSDEAKA 361

Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV------------- 360
               + +K +         +++ +K   ++ +L      A  + F               
Sbjct: 362 DHIQLAEKYNE--DHPHGTFWEYNKQGDFVINLENLLTVAVELGFRSFNGTVVQVNGKFV 419

Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
           +  +D++      +   ++++         Y R      S   S   +          S 
Sbjct: 420 TTVDDIYFFDTIKDYIKEDNEDVAIEIKNVYERFLKTYGSFITSKRLAAFDDEDILTDS- 478

Query: 421 LLDSSSRFLGEQDGILDLETGQKV-----KPTKELYITKSTGTPFV-EGEPSQEFLDLVS 474
              + + +    +  +++   +       + +  ++  K     +  E + S  +   + 
Sbjct: 479 ---ADACYKFYANCFVEITASKIRIKPYEELSGYVWSHKMLDREYHIERQSSNLYEQYLI 535

Query: 475 GYFESEEVMD-YFTRCVGMALLGGNKAQRFIHIR---------GVGGSGKSTLMNLIKYA 524
                   +D +    +G      N A R   +            GGSGK+    L+   
Sbjct: 536 NSTSVTGKIDPHVKNIIGWLCHDYNSAARLYMVVMTERVLDPKEGGGSGKNIFAGLLANV 595

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G     +                 N            +    +    I+   +K     
Sbjct: 596 IGM-STASGSMVKWDDKFYAVWKPGNR-----------LYFVPDLPKVIDWTFLKNAIEN 643

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
             +     Y +         TP ++ N +    + D    RR  ++ F 
Sbjct: 644 PLI--NKKY-DREISINMQETPKLLLNTNYSFADVDGGLKRRIRIVEFT 689


>gi|273809763|ref|YP_003344883.1| hypothetical protein [Streptococcus phage ALQ13.2]
 gi|224812515|gb|ACN64908.1| unknown [Streptococcus phage ALQ13.2]
          Length = 271

 Score = 65.3 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 64/282 (22%), Gaps = 31/282 (10%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVCGVGE 62
           + A      G+ +IP+    K P     + ++   +   I +     P            
Sbjct: 5   DYAINYQRMGYSVIPISKNGKTPLIS--FADKPPMTENDIRRVWRDNPDANIALKT---- 58

Query: 63  QPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
              +  D+D   D       ++     L    +  I       I  + +           
Sbjct: 59  DTFFVIDVDMHGDVDGLTNLRNWEHARLIPKTLQAITPSGGRHIYLKKDPNHP--ISQNI 116

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +DI      Y +    +  +K  Y W T                 ++ L K   E
Sbjct: 117 GMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQKMKPE 174

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237
                V    S     T T                         G  +  +   V   + 
Sbjct: 175 PLNYEVSSFASDSVRSTKTTKLFESI-----------LLGFGDKGGRNNALAEFVGGLLL 223

Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279
                           +       ++ F   + +   +EI  
Sbjct: 224 RGVDPEITYHLAKMANNNTKEPLGDKEFERTFKSMLDKEIRR 265


>gi|254441073|ref|ZP_05054566.1| hypothetical protein OA307_488 [Octadecabacter antarcticus 307]
 gi|198251151|gb|EDY75466.1| hypothetical protein OA307_488 [Octadecabacter antarcticus 307]
          Length = 549

 Score = 64.9 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 14/168 (8%)

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG--GSGKSTLMNLIKYAFG 526
           F D +S     E   +     +   L    K  ++  +      G+GK+TL ++ K  FG
Sbjct: 197 FWDFLSYVIPVENERETLINWLAWVLQNEGKKPKWAILLYSQKQGTGKTTLTDVCKALFG 256

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
                                    +   L    +++     +    +A +IK +   D 
Sbjct: 257 PANTGKTN--------GVSKLVGRFNKEVLDNKLVIVEEVEVKKGSTDANRIKTLITEDS 308

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
                 +  ++ +        +  N         D   RR+ ++ FD 
Sbjct: 309 TMVEAKFMPSHDQIIHCA-FVMTTNHLPLWLEEAD---RRFFILNFDH 352


>gi|323448180|gb|EGB04082.1| hypothetical protein AURANDRAFT_67508 [Aureococcus anophagefferens]
          Length = 319

 Score = 64.5 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 97/324 (29%), Gaps = 51/324 (15%)

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFES--------EEVMDYFTRCVGMALLGGNKA 500
           +++++ S G  + +   S E +D+   + +          ++       +   L   N  
Sbjct: 10  DVFLSWSCGYDYPQEPISDEIIDIFETWLDKYARAANETVDMKADIKTMIVETLCDKNSK 69

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
           +R   + G GG+GKS L NL+    G   V     +     +  EA   NP + R+   R
Sbjct: 70  ERAFFLMGEGGNGKSVLCNLLCNLLGEYAVNVPFETLT---KSIEAEGKNPFIKRMRYKR 126

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESPASFTPFIVPN-KHLFVR 617
            V  +                T  D +  R  +           +F      N + +   
Sbjct: 127 CVCSTTLA-------------TNKDEIRCRDLHEKLQDQKPFYGTFKIIHPFNGESIQFS 173

Query: 618 NP-DDAWWRRYIVIPFDKPIAN-------------RDASFAQKLETKYTLEAKKWFLKGV 663
              D A  RR                         RD     KLE  +T    KW  K +
Sbjct: 174 GAVDYATKRRITCQQAPNRFVEGYDSENKDENILPRDYELIDKLEL-FTPYLWKWLEKDI 232

Query: 664 KAYISKGLDVDIPEVCLKAKE--EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
           K Y   GL     +  +K+    + +   +   +      +   N       +      +
Sbjct: 233 KDYYKNGL-PTYSDDFMKSTRLGDFQNKCNRELSLFYSVVEEDPNSTVTLQDV------W 285

Query: 722 REQELNYDRKRISTRTVTLNLKQK 745
            +      +K +  + V      +
Sbjct: 286 AKVANGTVKKTVFWKAVKDAFVGR 309


>gi|154416640|ref|XP_001581342.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121915568|gb|EAY20356.1| hypothetical protein TVAG_193320 [Trichomonas vaginalis G3]
          Length = 263

 Score = 64.5 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 76/258 (29%), Gaps = 32/258 (12%)

Query: 496 GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553
              K +  + I G  G+GK+T   +++     G          +I           N S+
Sbjct: 15  PSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSSI 67

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             +       +   +    +N+  +K +           Y +       +    +  N  
Sbjct: 68  ENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 127

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
                  D   RRY+V+        +D  +   L    T +                 + 
Sbjct: 128 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 183

Query: 674 D-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELN 727
             IP    + ++   +   +    +ID    +C D          SL  SY +Y ++   
Sbjct: 184 RQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE--- 230

Query: 728 YDRKRISTRTVTLNLKQK 745
           Y     S RT   N+K  
Sbjct: 231 YGYMTASKRTFLANVKNL 248


>gi|125975319|ref|YP_001039229.1| prophage Lp4 protein 7, DNA replication [Clostridium thermocellum
           ATCC 27405]
 gi|125715544|gb|ABN54036.1| prophage Lp4 protein 7, DNA replication [Clostridium thermocellum
           ATCC 27405]
          Length = 183

 Score = 64.5 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 47/170 (27%), Gaps = 12/170 (7%)

Query: 67  AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
             D+D   ++T +  + T   L  T     G+  +    F+      +           L
Sbjct: 1   MLDVDDGGDETLSALESTHGKLPDTVTAVTGRGGR-HYVFKYP--RGRSIPNKTKFAPGL 57

Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV------EYLFKFFQEI 180
           D    G   V       +  +Y W      F  +      E  +      E L   F+  
Sbjct: 58  DNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFD-KTPAEAPEWLLKLMGREETLLTPFEGS 116

Query: 181 TVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFGEEFYNGSHDE 228
           ++     + S   + T        R  T   I A L        N   DE
Sbjct: 117 SIVAGIKEGSRNSTLTSLAGTMRVRGMTEESIYAALLAENNARCNPPLDE 166


>gi|260664091|ref|ZP_05864944.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii
           SJ-7A-US]
 gi|260561977|gb|EEX27946.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii
           SJ-7A-US]
          Length = 261

 Score = 64.5 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 71/275 (25%), Gaps = 42/275 (15%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKI----DKLPACGFGFVCGVGEQ 63
            AK    +GF +IP+   DKRP    K+  +  L+ ++I     + P             
Sbjct: 7   YAKSYAEHGFSVIPI-GNDKRPLI--KFANKPALTVDEIEAIWKRYPFAKIALKTEQ--- 60

Query: 64  PLYAFDID--SKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             +  D+D    +     + KD   +      +  I         FR  K   ++     
Sbjct: 61  -FFVVDVDRHHSEADGLESIKDLNHDEWFKDTLTEITAHGGYHFYFRKPKN--EEITQNI 117

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +DI      Y V           Y W                EE ++ + K  ++
Sbjct: 118 GWLPGVDIKAHVNNYVVCAPS-----AGYKWLNHKPMKD------APEELIKAINKNKKQ 166

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237
             + L +        K+ T     Q  +                G  +  +   +   ++
Sbjct: 167 ENLSLDQIDNIRFSGKSQTAILFEQIVD-----------GLGETGGRNNALAAFMGGLLY 215

Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
                    K               +       + 
Sbjct: 216 RNVDPEKAVKLAILANDATEDKLSSDELIRTVQSM 250


>gi|123184264|ref|XP_001281067.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121834842|gb|EAX68137.1| hypothetical protein TVAG_597950 [Trichomonas vaginalis G3]
          Length = 258

 Score = 64.5 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 24/254 (9%)

Query: 496 GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553
              K +  + I G  G+GK+T   +++     G          +I           N S+
Sbjct: 10  PSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSSI 62

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             +       +   +    +N+  +K +           Y +       +    +  N  
Sbjct: 63  ENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 122

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
                  D   RRY+V+        +D  +   L    T +                 + 
Sbjct: 123 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 178

Query: 674 D-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
             IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y   
Sbjct: 179 RQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYM 229

Query: 732 RISTRTVTLNLKQK 745
             S RT   N+K  
Sbjct: 230 TASKRTFLANVKSL 243


>gi|183603143|ref|ZP_02712937.2| replication protein [Streptococcus pneumoniae SP195]
 gi|183572617|gb|EDT93145.1| replication protein [Streptococcus pneumoniae SP195]
 gi|332072389|gb|EGI82872.1| primase family protein [Streptococcus pneumoniae GA17570]
          Length = 273

 Score = 64.5 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 70/275 (25%), Gaps = 21/275 (7%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLLSSEK-IDKLPACGFGFVCGVGEQ 63
           KE A Q    GF +IP+   +K P      K        E   D  P             
Sbjct: 5   KEYALQYQKLGFSVIPINPKNKMPLIDFADKPAMTPSEIENFWDGYPNANIAL----KIT 60

Query: 64  PLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             +  DID         + K      ++  T   +     K L  F+   E         
Sbjct: 61  NFFVIDIDKHGKSNGFESLKKWKHLNLIEPTLQAKTASGGKHLFYFKREDEP---ITQMI 117

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +DI      Y +         + Y W       +       S++ ++ + K +  
Sbjct: 118 GFLPGVDIKAHENNYVLVAPSATDKGQ-YEW-DLEKSKEGGTMVTPSKDLIQSIKKQY-- 173

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237
                          +     ++ +   +    F +        G  ++ +   V   ++
Sbjct: 174 -GETHGYKYDGKDGLRDLVRRSHTRDRTQTTDLFETIALGFGDEGGRNDKLAKFVGGLLY 232

Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
                    +      +   +   E+      ++ 
Sbjct: 233 RAVDDGVVVQLARLANANSPNPLPEKEMMRTIESM 267


>gi|123197436|ref|XP_001283791.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121843967|gb|EAX70861.1| hypothetical protein TVAG_571710 [Trichomonas vaginalis G3]
          Length = 263

 Score = 64.5 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 76/258 (29%), Gaps = 32/258 (12%)

Query: 496 GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553
              K +  + I G  G+GK+T   +++     G          +I           N S+
Sbjct: 15  PSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSSI 67

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             +       +   +    +N+  +K +           Y +       +    +  N  
Sbjct: 68  ENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVV 127

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
                  D   RRY+V+        +D  +   L    T +                 + 
Sbjct: 128 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 183

Query: 674 D-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELN 727
             IP    + ++   +   +    +ID    +C D          SL  SY +Y ++   
Sbjct: 184 RQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE--- 230

Query: 728 YDRKRISTRTVTLNLKQK 745
           Y     S RT   N+K  
Sbjct: 231 YGYMAASKRTFLANVKNL 248


>gi|256851386|ref|ZP_05556775.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii
           27-2-CHN]
 gi|260660810|ref|ZP_05861725.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii
           115-3-CHN]
 gi|282933165|ref|ZP_06338552.1| phage protein [Lactobacillus jensenii 208-1]
 gi|256616448|gb|EEU21636.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii
           27-2-CHN]
 gi|260548532|gb|EEX24507.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii
           115-3-CHN]
 gi|281302669|gb|EFA94884.1| phage protein [Lactobacillus jensenii 208-1]
          Length = 261

 Score = 64.5 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 71/275 (25%), Gaps = 42/275 (15%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKI----DKLPACGFGFVCGVGEQ 63
            AK    +GF +IP+   DKRP    K+  +  L+ ++I     + P             
Sbjct: 7   YAKSYAEHGFSVIPI-GNDKRPLI--KFANKPALTVDEIEAIWKRYPFAKIALKTEQ--- 60

Query: 64  PLYAFDID--SKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             +  D+D    +     + KD   +      +  I         FR  K   ++     
Sbjct: 61  -FFVVDVDRHHSEADGLESIKDLNHDEWFKDTLTEITAHGGYHFYFRKPKN--EEITQNI 117

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +DI      Y V           Y W                EE ++ + K  ++
Sbjct: 118 GWLPGVDIKAHVNNYVVCAPS-----AGYKWLNHKPMKD------APEELIKAINKNKKQ 166

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237
             + L +        K+ T     Q  +                G  +  +   +   ++
Sbjct: 167 ENLSLDQIDNIRFSGKSQTAILFEQIVD-----------GLGETGGRNNALAAFMGGLLY 215

Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
                    K               +       + 
Sbjct: 216 RNVDPEKAVKLAILANDATEDKLSSDELIRTVQSM 250


>gi|260462806|ref|ZP_05811011.1| Bifunctional DNA primase/polymerase [Mesorhizobium opportunistum
           WSM2075]
 gi|259031450|gb|EEW32721.1| Bifunctional DNA primase/polymerase [Mesorhizobium opportunistum
           WSM2075]
          Length = 226

 Score = 64.1 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 34/184 (18%)

Query: 8   EQAKQAIHNGFKLIPLRLGDK---------RPQRLGK----------------WEEQLLS 42
           E A + +  G+  +PL  G K         RP  L                    ++  +
Sbjct: 18  EYAIRLLAKGYICVPLCAGGKHLDLQAMEYRPLHLQSRRRDLKELAFQSVAFHLSQKPPT 77

Query: 43  SEKIDKLP---ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK 99
            + I +     A   G + G     L   D D      + + K    +L+ TPI R    
Sbjct: 78  GDDIRRWFRKFAGNVGILGGF--SNLLILDFDDAATYLSWSSKHEA-LLNRTPIARSPNG 134

Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
             + +  R                    +   G Y V      K    Y+W      F V
Sbjct: 135 FHVYLRTRDPTASSSLYAGMRRIGH---VKALGGYVVGSPSMLKDGSSYSWLKDHSPFDV 191

Query: 160 EDTP 163
           + +P
Sbjct: 192 DPSP 195


>gi|148993435|ref|ZP_01822952.1| phage protein [Streptococcus pneumoniae SP9-BS68]
 gi|147927990|gb|EDK79010.1| phage protein [Streptococcus pneumoniae SP9-BS68]
          Length = 270

 Score = 64.1 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 70/275 (25%), Gaps = 21/275 (7%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLLSSEK-IDKLPACGFGFVCGVGEQ 63
           KE A Q    GF +IP+   +K P      K        E   D  P             
Sbjct: 2   KEYALQYQKLGFSVIPINPKNKMPLIDFADKPAMTPSEIENFWDGYPNANIAL----KIT 57

Query: 64  PLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             +  DID         + K      ++  T   +     K L  F+   E         
Sbjct: 58  NFFVIDIDKHGKSNGFESLKKWKHLNLIEPTLQAKTASGGKHLFYFKREDEP---ITQMI 114

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +DI      Y +         + Y W       +       S++ ++ + K +  
Sbjct: 115 GFLPGVDIKAHENNYVLVAPSATDKGQ-YEW-DLEKSKEGGTMVTPSKDLIQSIKKQY-- 170

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237
                          +     ++ +   +    F +        G  ++ +   V   ++
Sbjct: 171 -GETHGYKYDGKDGLRDLVRRSHTRDRTQTTDLFETIALGFGDEGGRNDKLAKFVGGLLY 229

Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
                    +      +   +   E+      ++ 
Sbjct: 230 RAVDDGVVVQLARLANANSPNPLPEKEMMRTIESM 264


>gi|291442771|ref|ZP_06582161.1| bifunctional DNA primase/polymerase [Streptomyces ghanaensis ATCC
           14672]
 gi|291345666|gb|EFE72622.1| bifunctional DNA primase/polymerase [Streptomyces ghanaensis ATCC
           14672]
          Length = 354

 Score = 64.1 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 50/205 (24%), Gaps = 48/205 (23%)

Query: 3   VMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK---------IDKLPA-- 51
            M W       +  G  +IP    DK P  +  +     + E           D      
Sbjct: 46  AMVW-------LRRGLPVIPCSRVDKGPM-VAGFGRDATAEELAPFSDPRQVWDWWSGRF 97

Query: 52  --CGFGFVCGVGEQ-PLYAFDIDSKDEKTA------------NTFKDTFEILHGTPIVR- 95
                G + G G    L   D+D + E T             +  +              
Sbjct: 98  RRAHVGILTGRGAGRGLLVIDLDVRKEGTDLPPEYAYAYSGVDILERMATEAGEPWPDTY 157

Query: 96  --IGQKPKILIPFRMNKEG------IKKKKTTESTQGHLDILGCGQYFVAYNIHP-KTKK 146
             I     + + FR  +EG           T       +D+ G G   +A   +      
Sbjct: 158 SVITPSGGVHLYFRQPEEGPLIGCATGAGPTAPHLGPLIDVRGVGGLVIAAGSYSAAQGI 217

Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVE 171
            Y   +            L    +E
Sbjct: 218 AYRRMSDSGDRPQP----LPGWLLE 238


>gi|221632575|ref|YP_002521796.1| hypothetical protein trd_0550 [Thermomicrobium roseum DSM 5159]
 gi|221155705|gb|ACM04832.1| hypothetical protein trd_0550 [Thermomicrobium roseum DSM 5159]
          Length = 781

 Score = 64.1 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 22/207 (10%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKLP---ACGFGFVCGVGE 62
           ++ A++    G   IP   G  RP      ++++L   E+++  P   A G   +CG   
Sbjct: 9   RQAAQKYQALGLPAIPAYRG--RPLILWQVYQQRLPEPEEVEGWPWSKADGVAVICGHQT 66

Query: 63  --QPLYA-FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
                +   D++ +    A  + D         +V   Q+  + +  R  +      +T 
Sbjct: 67  TFGGFWWCLDVEHQHRVEAERWLDATHPGWRHGLVAESQRNGLHVYCRSRQP----VRTQ 122

Query: 120 ESTQGHLDILGCGQYFVAYNI---HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
               G  DI G G    A       P   ++Y W +    F   +   L   D+ +    
Sbjct: 123 RHEWG--DIKGSGSLVYAPPSRRYKPDATQDYEWLS----FDPTNALQLEPADLPWPTDN 176

Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNR 203
             +            + +     N + 
Sbjct: 177 GHQQGPLGQPSLAETLKTTIPVGNRHN 203


>gi|123231276|ref|XP_001286273.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121851479|gb|EAX73343.1| hypothetical protein TVAG_347600 [Trichomonas vaginalis G3]
          Length = 261

 Score = 64.1 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 77/255 (30%), Gaps = 24/255 (9%)

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPS 552
           +   K +  + I G  G+GK+T   +++     G          +I           N S
Sbjct: 12  IPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSS 64

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           +  +       +   +    +N+  +K +           Y +       +    +  N 
Sbjct: 65  IENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNA 124

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
                   D   RRY+V+        +D  +   L    T +                 +
Sbjct: 125 VPMKLESSD---RRYVVVR-TSEAHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFN 180

Query: 673 VD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730
              IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y  
Sbjct: 181 PRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGY 231

Query: 731 KRISTRTVTLNLKQK 745
              S RT   N+K  
Sbjct: 232 MTASKRTFLANVKSL 246


>gi|300116738|ref|YP_003773384.1| primase/DNA polymerase [Hyperthermophilic Archaeal Virus 2]
 gi|299820253|gb|ADJ54264.1| primase/DNA polymerase [Hyperthermophilic Archaeal Virus 2]
          Length = 909

 Score = 64.1 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 94/727 (12%), Positives = 198/727 (27%), Gaps = 112/727 (15%)

Query: 17  GFKLIPLRLGDKRPQRLGKWEEQL-LSSEKIDK--LPACGFGFVCGVGEQ-----PLYAF 68
           GF +IP+  G K+P     W  +  +S ++++K    A G G   G          L   
Sbjct: 13  GFNIIPVDKG-KKPLTS--WSTRQRISRDELEKLLEKASGIGIAGGAVNPWSPVAMLAII 69

Query: 69  DIDSKD-----EKTANTFKDTFEILHGTPIVRIGQKP----KILIPFRMNK--------- 110
           D+D+ D      +     + T     G    R G K          FR +          
Sbjct: 70  DVDNPDVLEKHAELKRIVESTVSWKTGPRCPRCGNKHLDVLNPGHTFRCDSCGAEFTIEE 129

Query: 111 --------------EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156
                            K  + T   +  ++IL    Y +       +  +Y W  P   
Sbjct: 130 AKRGIGALVSLDVDTAEKYIRGTVRGR-DVEILVNN-YALIPPSTHPSGVQYEWIRPFDF 187

Query: 157 FKVE-DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLS 215
                    L E ++  L +    +   + +  +  I  K   +       +  I     
Sbjct: 188 KAPNLGIRALVESELASLLEELGVLKPHVEQPAEGGIGEKLPGSQLRELADSDIIAIKEL 247

Query: 216 CFGEEFYNGSHDEWI-PVVMA-------------VHHETRGSSKGKEIARRWSKQGSTYD 261
                        W+     A             +      +     +  R S    +Y 
Sbjct: 248 LKEAYRPGVRQYVWLFLSGWAAKAGISPVSIAKVLKMLHDETGDEDPVKSRASSIVYSYR 307

Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG-KLIPKGLLASRFSDAYNKAMFSIYK 320
           +   +      +FEE+                   K   + +L     +     +    +
Sbjct: 308 KAGIDLTPYASEFEELFGVKPYGLEKEIREEEVKGKTGIQEILEEVLGEEKALEVIKEIE 367

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS----MKEDVF-----DLSE 371
           +   + +    +  +       I+++   +    +           KE VF      +  
Sbjct: 368 EKFKVSSPFRDSVIELLDYEKQIYAVANLRKLLVVRARRSEDRLVYKEKVFIGAPTKVVV 427

Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF---SITSDLLDSSSRF 428
                   +K    W      +  V   +        LEA  +     +  D+L +    
Sbjct: 428 YYNPVGGVTKYQVTWEVAVRPKPLVIGPALQPEILDRLEAEGLVVASRLARDVLAAIIHA 487

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------------EFLDLV 473
              + G  +L+T  +      +   K         EPS                ++   +
Sbjct: 488 YQVR-GRAELKTEIESPGFY-MVDGKLQAVSVEVKEPSPEELKEALLLLNELATKWFKHM 545

Query: 474 SGYFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
              F    V+ +        A     K  R++++ G   +GK+TL            +  
Sbjct: 546 PDKF--ATVIKWGLIAPFIYAYKQRGKWIRWLYLYGSSKTGKTTLAE----------IAT 593

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVI---ISETNENDEINAAKIKQMT--GGDCM 587
                +   +  + G +  +  RL          ++ +     ++ + I ++     + +
Sbjct: 594 VYLWRLDPGKHHKTGASMDTPARLGHVLSQSTFPVAISEPAGALDKSDIVEIIKASVEGL 653

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQ 645
           TAR  Y         +  P +  +     R+      RR+ V+ F   + +    A+  +
Sbjct: 654 TARGKYHRGAYTDIPALAPLVFTSNKYVPRDDT--LLRRFKVLHFTYGERVPEELATEFE 711

Query: 646 KLETKYT 652
                  
Sbjct: 712 SKVKPEL 718


>gi|326800887|ref|YP_004318706.1| VirE protein [Sphingobacterium sp. 21]
 gi|326551651|gb|ADZ80036.1| VirE protein [Sphingobacterium sp. 21]
          Length = 972

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 79/688 (11%), Positives = 185/688 (26%), Gaps = 89/688 (12%)

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMN----KEGIK 114
           +    L   D D    +     ++    +       +      + + F++N    +E  K
Sbjct: 75  IKHSGLLCLDYDGLSNEDIEDLREKLPQIPEVHAFFKSPSGNGLKVIFKINVNNHEESFK 134

Query: 115 KKKTTESTQGHLD---ILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170
           +    +    ++D   I   G     A  +   T   +   +   +      P  +E   
Sbjct: 135 QI--PQYLTDNIDMPAIDASGSDVARACFVSWDTNAYFNPKSKTFKCVKTKAPKKAEAAP 192

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
           +        +  P+   +      +     N  +   R     +     +  +  +D+  
Sbjct: 193 DA-------VANPVKATEDLPASERYERIKNLER--VRYCVHQIEQRKIDITDNDYDDRR 243

Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
            V  A+      +      A +++     YD ++ +YK   F         K  + F  L
Sbjct: 244 DVGFALSTLGEDARGLYHKAVQFN---DAYDPKDADYK---FSEALKNCNFKTPAKFFKL 297

Query: 291 FYHHG------KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344
             +HG      + I +        +       +       L+           KN   I 
Sbjct: 298 CKNHGILISKPRTIDQAKEEQELKEIIGDEHKADDYITFGLWEEGNIYKSLDLKNKPRIV 357

Query: 345 SLTLDKI-----TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV--- 396
           S  L +I     T+    + + +  ++F + +  + N  +  S   +     R+ N    
Sbjct: 358 SNFLMRILYHVETSDEEAYRMILIRNLFGVEKVIKINTDDFVSAGSFKKVIARKGNFIWL 417

Query: 397 --EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD-------------LETG 441
             +++          E  +   +++   +    F    +GI D             +   
Sbjct: 418 GQDQDLVRLQDKLQREERATSLVSTLGWNKRGSFYAFANGIFDTLENEFLDIDEYGIVEH 477

Query: 442 QKVKPTKELYITKSTGTPFVEGE------------PSQEFLDL---VSGYFESEEVMD-- 484
                 +  +I   +     + +                F          F     +   
Sbjct: 478 VYNDHPQNYFIPAMSKIFADKDDLYTNDKKFKYVKSDTTFKQWCGMFCKVFGDNGKIGVL 537

Query: 485 -YFTRCVGMALLGGNKAQR-FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
            Y +      +      +   +   G  GSGK T++  +   FG           I    
Sbjct: 538 FYISAVFSDVIFRAIGHRFPLLFAYGQRGSGKGTMIQSMMRLFGEGQDS------IGLGG 591

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE--S 600
                     L +   + + +    N  +  +   IK +   D +       +   +  S
Sbjct: 592 ASTVVGFMRKLAQFSNALVWLDEYKNSINPKHIESIKNI--YDRVGYERGKKDNTFQTDS 649

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEA--KK 657
               +  IV  + +    P  A + R I++ F +     +     ++             
Sbjct: 650 TPIRSAVIVSGQEMPTGEP--ALFMRTILLHFKETKRTEKARDLFKEFTELEEKGISHLT 707

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEE 685
             L   +    K        V  +  ++
Sbjct: 708 VMLLQYRKKFEKSFRETYNRVIRELVKD 735


>gi|303246065|ref|ZP_07332346.1| Bifunctional DNA primase/polymerase [Desulfovibrio fructosovorans
           JJ]
 gi|302492461|gb|EFL52332.1| Bifunctional DNA primase/polymerase [Desulfovibrio fructosovorans
           JJ]
          Length = 668

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 56/192 (29%), Gaps = 31/192 (16%)

Query: 27  DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSK---DEKTANTFKD 83
           +KRP     +                  G  CG     +   D+D+    D        D
Sbjct: 76  EKRPFDRTDFSTDRA-------------GVACGPAS-GVLVLDVDNPRLFDAWMQEKHPD 121

Query: 84  TFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HP 142
             E L  T  VR G   +    +     G ++     S +G  DI G G   +     HP
Sbjct: 122 --EPLPMTLKVRTGGHGERFHYYFQYPSGDEQYFCR-SVKGIFDIRGIGGQVLCPGSLHP 178

Query: 143 KTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202
           +T+K Y +         E  P+       +L +  ++       D +   P +       
Sbjct: 179 ETRKPYVF--------AEIVPIAPAPF--WLLEMSKKSDGGKKDDDEQSPPDRINEKQIL 228

Query: 203 RQYTNREITAFL 214
                    + L
Sbjct: 229 EIAPLDHFLSNL 240


>gi|123206387|ref|XP_001284914.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121847375|gb|EAX71984.1| hypothetical protein TVAG_568990 [Trichomonas vaginalis G3]
          Length = 263

 Score = 64.1 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 79/268 (29%), Gaps = 27/268 (10%)

Query: 483 MDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIM 539
           + Y        L     K +  + I G  G+GK+T   +++     G          +I 
Sbjct: 3   ISYVW--FANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENIC 60

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
                     N S+  +       +   +    +N+  +K +           Y +    
Sbjct: 61  GKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVC 113

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
              +    +  N         D   RRY+V+        +D  +   L    T +     
Sbjct: 114 ENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDALSETLTSDFYNHL 169

Query: 660 LKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKS 717
                       +   IP    + ++   +   +    +ID+     +    +  SL  S
Sbjct: 170 FSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDS 223

Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQK 745
           Y +Y ++   Y     S RT   N+K  
Sbjct: 224 YKQYCQE---YGYMTASKRTFLANVKNL 248


>gi|239934320|ref|ZP_04691273.1| hypothetical protein SghaA1_39360 [Streptomyces ghanaensis ATCC
           14672]
          Length = 308

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 48/194 (24%), Gaps = 41/194 (21%)

Query: 14  IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK---------IDKLPA----CGFGFVCGV 60
           +  G  +IP    DK P  +  +     + E           D           G + G 
Sbjct: 4   LRRGLPVIPCSRVDKGPM-VAGFGRDATAEELAPFSDPRQVWDWWSGRFRRAHVGILTGR 62

Query: 61  GEQ-PLYAFDIDSKDEKTA------------NTFKDTFEILHGTPIVR---IGQKPKILI 104
           G    L   D+D + E T             +  +                I     + +
Sbjct: 63  GAGRGLLVIDLDVRKEGTDLPPEYAYAYSGVDILERMATEAGEPWPDTYSVITPSGGVHL 122

Query: 105 PFRMNKEG------IKKKKTTESTQGHLDILGCGQYFVAYNIHP-KTKKEYTWTTPPHRF 157
            FR  +EG           T       +D+ G G   +A   +       Y   +     
Sbjct: 123 YFRQPEEGPLIGCATGAGPTAPHLGPLIDVRGVGGLVIAAGSYSAAQGIAYRRMSDSGDR 182

Query: 158 KVEDTPLLSEEDVE 171
                  L    +E
Sbjct: 183 PQP----LPGWLLE 192


>gi|258539258|ref|YP_003173757.1| phage-related DNA replication protein [Lactobacillus rhamnosus Lc
           705]
 gi|257150934|emb|CAR89906.1| Phage-related protein, DNA replication [Lactobacillus rhamnosus Lc
           705]
          Length = 276

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 26/177 (14%)

Query: 13  AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67
              +GF + PL    + P      +++     E+  K     P    G         +  
Sbjct: 12  YQQHGFSVYPLAPATRTPLNGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 67

Query: 68  FDID---SKDEKTANTFKDTFEI----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116
           FDID           T              +  +       + I F   KE         
Sbjct: 68  FDIDMGHKSGANGNETLAKLSADGRAGQIPSTYIEATPNGGLHIFFTYPKELKLTSRSDL 127

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
            +    +  LD +  G     +    +         P    K+     + +  ++ +
Sbjct: 128 FSKNGEKTGLDYIATG--VPVFPSIRENGMY----QPLKGHKITKLAPVPQWLLDEI 178


>gi|209551736|ref|YP_002283653.1| hypothetical protein Rleg2_4165 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537492|gb|ACI57427.1| hypothetical protein Rleg2_4165 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 842

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 79/264 (29%), Gaps = 20/264 (7%)

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP-------------KILIPFRMNK 110
           P+ + +ID++ +   +          G P + I                           
Sbjct: 144 PVLSVEIDARPDAALSELVTVL----GEPTITIHSGGVWTSPDGRQENKIHAHWRLSFPA 199

Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKT--KKEYTWTTPPHRFKVEDTPLLSEE 168
               + +  ++ +    +L       +  +HP       +T TT     K+      +E 
Sbjct: 200 TRPDELRKLKAVRRAAAMLVDADKSASPLVHPMRWPGSWHTKTTSARMCKIVAEDDFAEI 259

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228
           D++   +  Q   V           + +       +  + EI    +       +   DE
Sbjct: 260 DLDVAAEALQAALVDRGLQTPGSPAAPSANGFKTEKAWS-EIALLDAARIIPNGDLGWDE 318

Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
           W  + M  +  + G   G E    WS++ + +DE     +WD +      + + +   F 
Sbjct: 319 WNRIGMIFYDASHGDVAGLEAFLSWSEKSAKHDEVAAEARWDHYSSSPPNNLSDRTLLFE 378

Query: 289 SLFYHHGKLIPKGLLASRFSDAYN 312
                    +P        SD ++
Sbjct: 379 MRKVDPLYTLPADSSPVDTSDIFD 402


>gi|123488423|ref|XP_001325160.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121908055|gb|EAY12937.1| hypothetical protein TVAG_404830 [Trichomonas vaginalis G3]
          Length = 895

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 76/254 (29%), Gaps = 24/254 (9%)

Query: 496 GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553
              K +  + I G  G+GK+T   +++     G          +I           N S+
Sbjct: 647 PSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSSI 699

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
             +       +   +    +N+  +K +           Y +       +    +  N  
Sbjct: 700 ENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 759

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
                  D   RRY+V+        +D  +   L    T +                 + 
Sbjct: 760 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 815

Query: 674 D-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
             IP    + ++   +   +    +I++     + +  +  SL   Y +Y ++   Y   
Sbjct: 816 RQIPHT--EERQTLLEANKSVYELFIEE----SDFVSLDERSLYDLYKQYCQE---YGYM 866

Query: 732 RISTRTVTLNLKQK 745
             S RT   N+K  
Sbjct: 867 AASKRTFLANVKSL 880


>gi|211731797|gb|ACJ10118.1| predicted P-loop ATPase [Bacteriophage APSE-3]
          Length = 666

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 67/530 (12%), Positives = 144/530 (27%), Gaps = 81/530 (15%)

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243
                   ++     N    T  ++ + L          ++  W+ +   +A   +TR  
Sbjct: 121 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFE 180

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
            + K +   WS   +  D E    KW              R+ + ++F    K       
Sbjct: 181 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 232

Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
           A R   A      F            +   W    +N            +  I   + + 
Sbjct: 233 AERLKTAVATVDEFDDLTDPT-----ENSKWPTFKRNRT----------SGQIEATIDNA 277

Query: 363 KEDVFDLSEEPEDNNKNSKSPR-FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
            + V        +   ++      +     +      ++       ++E     ++  +L
Sbjct: 278 AKAVMCADFVGVEIRFDTFRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGREL 337

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
           +         ++                +   KS      E +           +F +E+
Sbjct: 338 IRDVVLLAAVEN-----------PFDSAMEWLKSL-----EWDGIPRIETFYHTHFGTED 381

Query: 482 ------VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
                 V  Y    + G  L  G KA     + G  GSGKS+ +            ++ +
Sbjct: 382 TAYTRAVSRYMWTALAGRVLKPGIKADMVPILVGAQGSGKSSGV----------AALSPD 431

Query: 535 ASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
            +   +    E       L R + G  +  ISE    +      IK             +
Sbjct: 432 PTFFTEISFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKF 488

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
               ++ P         N+  F+ +      RR++ +     +   D    +K       
Sbjct: 489 KEFATQFPRRSLSIGTTNEDEFLGDKTG--NRRWLPVE----VGKMDVEGIKKDV----- 537

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699
             + W  +  + +   G+     E       E+        +  + W+D+
Sbjct: 538 -IQLWA-EARELFNETGIQFQEAEQLANQVHEKYFIKDAWQEIIERWLDE 585


>gi|145354015|ref|XP_001421292.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581529|gb|ABO99585.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 423

 Score = 63.8 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 16/182 (8%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKW-EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAF 68
           A++   NG  LIPL   DK P     + +E          +P   +G + G     +   
Sbjct: 3   AREF-TNGMHLIPLD-QDKEPTCGRGFLDEANYEQNTQKVIPGEMYGVLTGRP-NRVLVV 59

Query: 69  DIDSKDEKTANTFKDTF---EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125
           D D    K      +     ++      +   +       F  ++E +   K T   +G 
Sbjct: 60  DWDCYGGKCEFELTEEMLTRKVGGEGAYIVKTRSGGYHTYFAWDEERVGDWKGTVGIEGF 119

Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185
           +DI   G Y V    H      Y          + + P +  +   +             
Sbjct: 120 VDIRTTGNYVV--GAHAP---GYELLRG----DINNLPPMPNDLYSFFDGKVGHKVERAD 170

Query: 186 KD 187
            +
Sbjct: 171 TE 172


>gi|291460141|ref|ZP_06599531.1| RecA-family ATPase [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417482|gb|EFE91201.1| RecA-family ATPase [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 764

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 65/205 (31%), Gaps = 16/205 (7%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284
            + EWI V MA+  E   +S+      +WS+  + Y       KW TF  E  G      
Sbjct: 19  DYQEWINVGMALKQEGHTASE----WDQWSRADARYKPGECFKKWMTFRNENGGA----P 70

Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344
            T  ++  +  +           ++ Y  +     +K          AW ++ +      
Sbjct: 71  VTGGTIVEYAKRGGFTLPQRGGETEDYALSWDDTIEKDDLTIV--DSAWLEEREIEEPK- 127

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD----YRRQNVEENS 400
                K    I+ +L ++ +   ++    E      +      N D       + + + +
Sbjct: 128 -EEAWKPVQEIITYLQTLFQSTENVGYVTEVYKNEDRLSPKKGNWDRTAGQLIEELRKYN 186

Query: 401 KAKSTAQSLEAGSIFSITSDLLDSS 425
              +        +   I  + LD +
Sbjct: 187 DVGAVFGDPNPEAGAWIRFNPLDGN 211


>gi|326778039|ref|ZP_08237304.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658372|gb|EGE43218.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 319

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 29/125 (23%), Gaps = 6/125 (4%)

Query: 51  ACGFGFVCGVGEQPLYAFDID-----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
           A G+G  CG     L   D+D       D   A        +    P V +         
Sbjct: 83  ATGYGIACGRAPHRLIGVDLDIDPSYGSDAAGALRQLGLQHLFTIPPTVTVLTPSGGRHL 142

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
           +           +       +DI G G Y V       T   Y              P  
Sbjct: 143 WLTGPADATVPNSAGRLAPGIDIRGSGGYLVGPGSV-TTHGRYRLAPGTAHLTPAPCPRA 201

Query: 166 SEEDV 170
               +
Sbjct: 202 LLRLL 206


>gi|182437403|ref|YP_001825122.1| hypothetical protein SGR_3610 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178465919|dbj|BAG20439.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 319

 Score = 63.4 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 29/125 (23%), Gaps = 6/125 (4%)

Query: 51  ACGFGFVCGVGEQPLYAFDID-----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
           A G+G  CG     L   D+D       D   A        +    P V +         
Sbjct: 83  ATGYGIACGRAPHRLIGVDLDIDPSYGSDAAGALRQLGLQHLFTIPPTVTVLTPSGGRHL 142

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
           +           +       +DI G G Y V       T   Y              P  
Sbjct: 143 WLTGPADATVPNSAGRLAPGIDIRGSGGYLVGPGSV-TTHGRYRLAPGTAHLTPAPCPRA 201

Query: 166 SEEDV 170
               +
Sbjct: 202 LLRLL 206


>gi|123236497|ref|XP_001286966.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121853513|gb|EAX74036.1| hypothetical protein TVAG_501220 [Trichomonas vaginalis G3]
          Length = 227

 Score = 63.4 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 16/194 (8%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E+V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 10  WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 69

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 70  LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 122

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                    Y +       +    +  N         D   RRY+V+        +D  +
Sbjct: 123 DKVRVVERKYKDQRVCENVANFIMVSSNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 178

Query: 644 AQKLETKYTLEAKK 657
              L    T E   
Sbjct: 179 FDDLAETLTPEFYN 192


>gi|326692266|ref|ZP_08229271.1| prophage DNA replication protein [Leuconostoc argentinum KCTC 3773]
          Length = 203

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 49/201 (24%), Gaps = 23/201 (11%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL-------PACGFGFVCGV 60
           E  +Q    G  +       K     G +       +++ +             G     
Sbjct: 5   EHVRQYQRAGIYVFMALPNQKHNSIEGGFHNSFADGDELRQWITQHPEYQNGNVGIDL-- 62

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTP------IVRIGQKPKILIPFRMNKEGIK 114
            +  L   DID  ++    +    F+  +  P       V       +   + +   G  
Sbjct: 63  SKSNLVVVDIDQHEQNGMASILAWFKSHNVNPDTLQDTYVEQTPTGGLHAFYLIPS-GQD 121

Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
           K K   +    +D+L      V          EY   TP  +          E   +   
Sbjct: 122 KPKHVINAIKGVDVLSNT--AVMTAPSVMKDGEYRQITPFDQ-----IQEAPEWVYQLAN 174

Query: 175 KFFQEITVPLVKDKKSIIPSK 195
                 T    K  +     +
Sbjct: 175 YQGSTNTPSNQKTTRYSNKDR 195


>gi|118465586|ref|YP_879557.1| hypothetical protein MAV_0268 [Mycobacterium avium 104]
 gi|118166873|gb|ABK67770.1| hypothetical protein MAV_0268 [Mycobacterium avium 104]
          Length = 978

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 60/222 (27%), Gaps = 17/222 (7%)

Query: 14  IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL---PACGFGFVCG-VGEQPLYAFD 69
           + + F ++PL    KRP     W      +E             G + G  GE+ L A+D
Sbjct: 32  LADAFHVLPLERARKRPVN-RGWPTAPALTEAALAWHLDQGGNIGALLGASGERGLIAWD 90

Query: 70  IDSKDEKTANTFKDT----FEILHGTPIVRIGQKPKILIPFRMNKE-------GIKKKKT 118
            D+     A                 P    G+       + +  E           + T
Sbjct: 91  ADNAAGAEAIEAAGYTPFAIPANALNPNHSKGRYGGRHFLWSVPAEWAVPGMELTSPRAT 150

Query: 119 TESTQGH-LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
                G  +D+L   ++ V    +   +       P   +     PL  +   +++    
Sbjct: 151 VTLAGGGTVDVLAGPKFLVLPPSYLCEEGHLNPYNPGAGWTPSPPPLPVQFWPDWVRPEG 210

Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
                  +   +  I  +T       +  +    A       
Sbjct: 211 TPDPPAELAALRVDIRKRTAFERAEDRMLSAGSRALTELIDA 252


>gi|333025828|ref|ZP_08453892.1| hypothetical protein STTU_3331 [Streptomyces sp. Tu6071]
 gi|332745680|gb|EGJ76121.1| hypothetical protein STTU_3331 [Streptomyces sp. Tu6071]
          Length = 240

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 3/98 (3%)

Query: 51  ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG---TPIVRIGQKPKILIPFR 107
           A G+G  CG+    L   D+D+K               HG      VR+         + 
Sbjct: 12  ASGYGIACGLAPYHLIGLDLDTKHGADPLRALALLGARHGFVLPATVRVATPSGGAHLWL 71

Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145
               G+  + +       +D+ G G Y V         
Sbjct: 72  SAPAGLTVRNSASRLAPGIDVRGTGGYLVGPGSRTTRG 109


>gi|302520426|ref|ZP_07272768.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302429321|gb|EFL01137.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 334

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 3/98 (3%)

Query: 51  ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG---TPIVRIGQKPKILIPFR 107
           A G+G  CG+    L   D+D+K               HG      VR+         + 
Sbjct: 106 ASGYGIACGLAPYHLIGLDLDTKHGADPLRALALLGARHGFVLPATVRVATPSGGAHLWL 165

Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145
               G+  + +       +D+ G G Y V         
Sbjct: 166 SAPAGLTVRNSASRLAPGIDVRGTGGYLVGPGSRTTRG 203


>gi|307149666|ref|YP_003891036.1| hypothetical protein Cyan7822_6660 [Cyanothece sp. PCC 7822]
 gi|306986795|gb|ADN18671.1| hypothetical protein Cyan7822_6660 [Cyanothece sp. PCC 7822]
          Length = 1328

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 95/742 (12%), Positives = 201/742 (27%), Gaps = 154/742 (20%)

Query: 26  GDKRP--QRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDID----SKDEK 76
              +P      +++ QL S+  + K    P  G G + G     ++  D+D        +
Sbjct: 97  EKGKPHLVNHRQYQNQLPSAIDLKKWFAHPDNGIGTLGG--HNGVHWIDLDLHQFPNQAE 154

Query: 77  TANTFKDTFEILHGT--PIVRIGQKPKILIPFRMNK-EGIKKKKTTESTQGHLDILGCGQ 133
               F    E        ++ I Q     I  R+ K  G      T+      + LG G+
Sbjct: 155 CEQAFWSILERQPALQNTLLEITQSDGYRIGVRVKKNPGFTNFSLTQGGTHVGECLGEGR 214

Query: 134 YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIP 193
           + V       + K Y     P +       L+  +++++++   ++ T  L +    ++ 
Sbjct: 215 FTVLSPTIGPSGKPYRNLNLPDK-------LVEIDEIDFIYSTKKDNTSSLAESSPKLLF 267

Query: 194 SKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRW 253
           S   T+NN       E+ A             +D+        H  T    +       W
Sbjct: 268 SPQSTSNNIPGSIPLEMLAHNGVQQIINGVDLYDDRS------HSLTATIKELFG-WENW 320

Query: 254 SKQ-GSTY-----------------DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295
               G  Y                 D +       + D   +  +A       S  +   
Sbjct: 321 CNTNGIAYRGTALELIQYAGERLGIDADRIERIIKSVDNPALCTSAAYHKGGDSSCWLKI 380

Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY-------------------KK 336
             + K    ++     ++ + +  K     ++++    Y                     
Sbjct: 381 SKLDKPTFEAKCPADISQQIKAEQKNWAKQHSSNGNGNYSPPGNGGDSGGNDDNHNRLSY 440

Query: 337 DKNNVYIWSL--TLDKI------------------------------------TASIMNF 358
            KN    W+      K                                      +     
Sbjct: 441 WKNAPTSWAGEIGYWKEKKKPIKDINGTIVGEQSESEFIPKCNFDFQIERELTDSEGGGI 500

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKSTAQSLEAGS 413
           L+ +K     L +     N ++ + + + N   +       N    ++  S   +L A  
Sbjct: 501 LIQIKRVFDKLQKSLLIRNADTLTAKDFNNALVKLYGNGITNNLSTAELNSFIHNLRAYY 560

Query: 414 IFS------ITSDLLDSSSRFLGEQDGILDLETGQKVKPTK----------ELYITKSTG 457
            +       +   +    +      +   D +     +             E  I   T 
Sbjct: 561 HYRGGKTYQLAERIGQQDNGTYVFSNCQFDKKGNPLSEEVSGIIFNSNLGLEDKIPSPTI 620

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF--------IHIRGV 509
            P          ++ +  +    +++      +G    G +  +          ++  G 
Sbjct: 621 LPPDPSA-LPRLVNAMIKFHGRSQIIPAMF-HLGYVAAGIHYQEIMKSEGRFPILNAYGD 678

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            GS K+          G                      A    ++L GS  ++  + ++
Sbjct: 679 AGSLKTVSAENALSLVGWVNG--------NGTFVRITESACYERLKLTGSLPLLFDDPDK 730

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
           +D +N   I+++  G    AR   GN            +  N    + +   A   R  +
Sbjct: 731 SDWLND-LIQRIYNG---RAREVRGNMQV---PHSPVIVTSNFL--IGDNKPACLSR--I 779

Query: 630 IPFDKPI-ANRDASFAQKLETK 650
           IP       + D S   +LE  
Sbjct: 780 IPLYHEFNGDGDPSAWDELEQA 801


>gi|239942767|ref|ZP_04694704.1| hypothetical protein SrosN15_17369 [Streptomyces roseosporus NRRL
           15998]
 gi|239989226|ref|ZP_04709890.1| hypothetical protein SrosN1_18136 [Streptomyces roseosporus NRRL
           11379]
 gi|291446237|ref|ZP_06585627.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291349184|gb|EFE76088.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 303

 Score = 63.0 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 26/102 (25%), Gaps = 5/102 (4%)

Query: 51  ACGFGFVCGVGEQPLYAFDIDS-----KDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
           A G+G  CG     L   D+D       D   A        +    P V +         
Sbjct: 81  ATGYGIACGRAPHRLIGIDLDVDPAYGSDAAGALRQLALQHLFTIPPTVTVLTPSGGRHL 140

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
           +           +       +DI G G Y V         + 
Sbjct: 141 WLTGPADATVPNSAGRLAPGIDIRGTGGYLVGPGSVTAHGRY 182


>gi|326446239|ref|ZP_08220973.1| hypothetical protein SclaA2_34472 [Streptomyces clavuligerus ATCC
           27064]
          Length = 333

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 54/256 (21%), Gaps = 71/256 (27%)

Query: 21  IPLRLGDKRPQRL-----------------------GKWEEQLLSSEKIDKL----PACG 53
            PL  G K P                            +         I       P  G
Sbjct: 2   HPLAPGRKTPAPNCGDCRDRPHPPQECDCIPAGRWCHGFHAATTDPALITAWWTRQPRFG 61

Query: 54  FGFVCGVGEQPLYAFDIDSKDEKT-----------------------ANTFKDTFEILHG 90
            G  CG     L   D+D+                                      L G
Sbjct: 62  VGVACGPA--GLVVIDVDAHPAPLPTPDRLLPGIHIPESVCLDGLRHGFHSLAVLAALRG 119

Query: 91  TP---------IVRIGQKPKILIPFRMNKEGIKKKKTTESTQ---GHLDILGCGQYFVAY 138
            P          VR       L       +  +    +   +     +D+   G Y +A 
Sbjct: 120 RPDPSQDESTLRVRTPSGGLHLWYTARPGQEWRCSTGSGVNRALAWQVDVRAHGGYIIAP 179

Query: 139 NIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198
                + + YT   P     V     L +     L +       P  +     +PS+ W 
Sbjct: 180 GTRTASGR-YTACGP-----VRRPAPLPDWLAAELERTGHRPVPPHPRTAT-PVPSRAWA 232

Query: 199 NNNNRQYTNREITAFL 214
             N  +         L
Sbjct: 233 AVNAARGGRDSAARVL 248


>gi|48843595|ref|YP_025168.1| helicase [Neodiprion sertifer NPV]
 gi|37626280|gb|AAQ96438.1| helicase [Neodiprion sertifer NPV]
          Length = 1143

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/484 (11%), Positives = 130/484 (26%), Gaps = 58/484 (11%)

Query: 334  YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
            Y  D N+  +     + +     N L++ K DV              +     +++    
Sbjct: 670  YLSDDNDNKLIEALGETVFDINANLLINRKNDVLKNLTSLTQMKNIKQLISHIYDSSLWS 729

Query: 394  QNVEENSKAKSTAQSLEAGSIFSITSDLLDS------------SSRFLGEQDGI-----L 436
            +NV          +      +    S LLD                 L   +       +
Sbjct: 730  KNVLLIQNEIDPTRKKFKSDVVDNPSVLLDQLVQQLTICNIWKDKLILPVSNETTLQWLI 789

Query: 437  DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
                       +      +        E     L   +  +   + + Y         + 
Sbjct: 790  RFYMRCIFPHLRGFVNYATNPHMINIAEAYCYMLIANNFAY---DHVLYLLTFAASLNIP 846

Query: 497  GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
             N  +  + + G   +GK++ ++      G   V     +  + NR     +   S    
Sbjct: 847  QNYEKLLLVLTGSSNAGKTSFIS----LLGKIAVKMPSNTLFIDNRGNGPSEMEFSRAIS 902

Query: 557  MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
                I  + +T   +  N A + +      +  R  +     +    + P +  N+ L +
Sbjct: 903  QLYEINEVHKTTAENIKNTADLSR-----EVVVRHAHS-ACQKIMLQYKPILCNNRMLEI 956

Query: 617  RNPDDAWWRRYIVIPFDKPIANRD-------ASFAQKLETKYTLEA---KKWFLKGVKAY 666
             N D A   R I++ +D     +          +  K      +      +  +  +  +
Sbjct: 957  ENCDKAVENRLIIVYYDHVFEKKVVFSGSIYEHYITKHYPDELINIGDSFRVLVSYMLIH 1016

Query: 667  ISKG-------LDVDIPEVCLK-----AKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
                         +  P +              +  D     +D       NLW +  +L
Sbjct: 1017 YKDNKTNLISSRRMLTPRMIKNIKTVSVMNIFAEAIDYI---LDVQMTDDPNLWIDVETL 1073

Query: 715  AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
               +  Y  + L      +S + +T    ++ F      +  E      +    L++   
Sbjct: 1074 KDVFL-YVPKILQTI--CVSKKMITQEECEEMFYSRHVDKYYENADSMGKNYYRLQINTN 1130

Query: 775  FESV 778
             + +
Sbjct: 1131 LDKI 1134


>gi|94990319|ref|YP_598419.1| phage protein [Streptococcus phage 10270.2]
 gi|94543827|gb|ABF33875.1| phage protein [Streptococcus phage 10270.2]
          Length = 270

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 66/267 (24%), Gaps = 25/267 (9%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           + A      GF +IP+    K+P         + E  L        P             
Sbjct: 6   DYAIYYQQKGFSVIPISKDGKKPLVAFADKPAFTEHELRL-IWKDNPDANIALRT----D 60

Query: 64  PLYAFDIDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
             +  DID  +          +E   L    +          I  +  +           
Sbjct: 61  SFFVIDIDVHNGVDGLKNLREWEHARLIPKTLQATTPSGGRHIYLKKPQG--VSMAQNIG 118

Query: 122 TQGHLDILGC-GQYFVAYNIHPKTKKEYTW--TTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
               +D+      Y +    +   K  Y W     P   ++ + PL     +  L   ++
Sbjct: 119 FIDGVDLKAHVNNYVLVPPSN-NAKGMYEWDMVHSPTSGEMTEAPLELINVLRELRPAYE 177

Query: 179 ------EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
                         +K + +         +    N  +  F+        N   +    +
Sbjct: 178 YDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAEFVGGLL--LRNVDVEIAYTL 235

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGST 259
               +H+T      KE  R +      
Sbjct: 236 AKMANHKTADPLSDKEFERTFKSMCDK 262


>gi|94988181|ref|YP_596282.1| phage protein [Streptococcus phage 9429.1]
 gi|94990061|ref|YP_598161.1| phage protein [Streptococcus phage 10270.1]
 gi|94993973|ref|YP_602071.1| phage protein [Streptococcus phage 10750.1]
 gi|94541689|gb|ABF31738.1| phage protein [Streptococcus phage 9429.1]
 gi|94543569|gb|ABF33617.1| phage protein [Streptococcus phage 10270.1]
 gi|94547481|gb|ABF37527.1| phage protein [Streptococcus phage 10750.1]
          Length = 270

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 68/281 (24%), Gaps = 25/281 (8%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           + A      GF +IP+    K+P         + E  L        P             
Sbjct: 6   DYAIYYQQKGFSVIPISKDGKKPLVAFADKPAFTEHELRL-LWKDNPDANIALRT----D 60

Query: 64  PLYAFDIDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
             +  DID  +          +E   L    +          I  +  +           
Sbjct: 61  SFFVIDIDVHNGVDGLKNLREWEHARLIPKTLQATTPSGGRHIYLKKPQG--VSMAQNIG 118

Query: 122 TQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
               +D+      Y +    +   K  Y W               S E  E   +    +
Sbjct: 119 FVDGVDLKAHVNNYVLVPPSN-NAKGMYVWDKVHSPT--------SGEMTEAPLELITVL 169

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
                  +       +     + +      T  L        N S  E++   + + +  
Sbjct: 170 QELKPAYEYDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNSLAEFVG-GLLLRNVD 228

Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
              +          K     +++ F+  + +   +E+   +
Sbjct: 229 VEIAYTLAK-MANHKTVDPLNDKEFDRTFKSMCDKELRRRS 268


>gi|325284423|ref|YP_004256963.1| Bifunctional DNA primase/polymerase [Deinococcus proteolyticus MRP]
 gi|324316487|gb|ADY27600.1| Bifunctional DNA primase/polymerase [Deinococcus proteolyticus MRP]
          Length = 370

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 63/253 (24%), Gaps = 49/253 (19%)

Query: 17  GFKLIPLRLGDKRP------------------QRLGKWEEQLLSSEKIDKL---PACGFG 55
           G+ ++P+    KRP                        + Q + +E +         G  
Sbjct: 14  GWNVLPVDH-HKRPHRRLTLTGHSQTRDGKTAPSWKPLQTQRVQTEWLHTWFTPDVPGLA 72

Query: 56  FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
            V G     L   D D +        +       G     +       + F      ++ 
Sbjct: 73  AVTGAISS-LVVLDFDGEAGW--ALLRKW-----GLSPNALSGSGSPHVYFEHPGWHVRT 124

Query: 116 KKTTESTQG---HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
             +          LD+   G   V    H  +   Y          V+  P      V  
Sbjct: 125 VASGSLKNPPFPGLDVRADGGMIVLPPSH-LSNGAYR-MLDVSPQPVDTLPEA----VAL 178

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
                    V L +      P      +N+ +    E     S   +   N  +  W+  
Sbjct: 179 WVGLLPTPAVTLPE-----APLPEAGTDNDLRALLDEAV---SRSAQGRNNAGY--WLAR 228

Query: 233 VMAVHHETRGSSK 245
            +A    TR  ++
Sbjct: 229 QLAAQGLTRSDAE 241


>gi|302538857|ref|ZP_07291199.1| bifunctional DNA primase/polymerase [Streptomyces sp. C]
 gi|302447752|gb|EFL19568.1| bifunctional DNA primase/polymerase [Streptomyces sp. C]
          Length = 347

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 42/214 (19%), Gaps = 65/214 (30%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRL-----------------------GKWEEQLLSSEKI 46
           A      G  + PL  G K P                            +      +  I
Sbjct: 2   ALWLAARGMPVHPLAPGTKTPAGNCAACREQQHAPADCPCTARGRWCHGFHAATTDAAVI 61

Query: 47  DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDT----FEILHGTPIVRIG- 97
                  P  G    CG     L   D+D+   +     +       +       +R G 
Sbjct: 62  RDWWRQEPGFGVAVSCGPA--GLVVIDVDTHPAELPERGRLLPGIPIDDRVDLTGLRSGY 119

Query: 98  --------------------------QKPKILIPFRMN--KEGIKKKKTTESTQ---GHL 126
                                         + I +R       I+    T S       +
Sbjct: 120 DTLALLAAVRRRPDPAQDTATLRVRTPSGGLHIWYRAPLGGPAIRSSTGTGSRTALAWQV 179

Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
           D+   G Y VA                     + 
Sbjct: 180 DVRATGGYIVAPGTRTAHGTYEALPGSRTPAPLP 213


>gi|119476603|ref|ZP_01616913.1| hypothetical protein GP2143_03203 [marine gamma proteobacterium
           HTCC2143]
 gi|119449859|gb|EAW31095.1| hypothetical protein GP2143_03203 [marine gamma proteobacterium
           HTCC2143]
          Length = 164

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 22/158 (13%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           WK   +   +     +P+               W     ++  +++    G GFV  V  
Sbjct: 23  WKAVVRP--NGKITKVPMNPLTGIKASSINSKTWASFDKAATGMNRHGYDGIGFVF-VRG 79

Query: 63  QPLYAFDIDS---KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
             L   D+D+      +     +D  + L     V        +I +         K   
Sbjct: 80  DGLVGVDLDNCMRSHGQLETWAQDIVDRLDSYTEVSPSGNGVHIICYSGASGLSYNKDGR 139

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRF 157
                  ++   G+YF        T  EY      +  
Sbjct: 140 -------EMYSEGRYFTV------TGNEYYVRGHSNEN 164


>gi|254385241|ref|ZP_05000572.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194344117|gb|EDX25083.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 367

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 48/188 (25%), Gaps = 63/188 (33%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQ----------------------RL-GKWEEQLLSSEKI 46
           A+    NG+ + PL  G K P                       R    +    L  E+I
Sbjct: 27  ARWCASNGWPVHPLAPGRKTPAANCRECSQPGHTRTGCLCPAAGRWCHGFHAATLDYERI 86

Query: 47  DKL----PACGFGFVCGVGEQPLYAFDID-------SKDEKT----------------AN 79
           D+     P+ G    CG     L   DID        +D+                    
Sbjct: 87  DQWWGKTPSLGVAVACGPA--GLVVIDIDAHQSEPPHRDKVLPGIPIGEHIDLSGMTTGY 144

Query: 80  TFKDTFEILHGTP-------IVRI-GQKPKILIPFRMNKEGI---KKKKTTESTQGHLDI 128
                   L G P        +R+      + + +R                +    +D+
Sbjct: 145 HSLAVLAALRGEPSPAEDTSTLRVRTPSGGLHVWYRATDGRRWQCSTGSGKRALAWQVDV 204

Query: 129 LGCGQYFV 136
              G Y +
Sbjct: 205 RAHGGYII 212


>gi|325963608|ref|YP_004241514.1| DNA primase/polymerase-like protein [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469695|gb|ADX73380.1| DNA primase/polymerase-like protein [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 310

 Score = 62.6 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 14/140 (10%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65
           A+     G  + P  +  KRP     + +     E++       P    G   G     +
Sbjct: 24  ARSLAAAGVPVFPCVVEGKRPLTRRGFLDASSDPEQVAAWWSRTPNANIGIPTGAPSGVV 83

Query: 66  YAFD-----IDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
                     D +      T     +   G  ++         + F       +++++ +
Sbjct: 84  VVDVDVHGPHDGRAAFQRATDAGLVD---GAGLLVRTPTGGAHVYF--PATPGREQRSWQ 138

Query: 121 STQGHLDILGCGQYFVAYNI 140
           +    +D  G G Y +A   
Sbjct: 139 AATAGVDFRGDGGYIIAPPS 158


>gi|318061648|ref|ZP_07980369.1| hypothetical protein SSA3_27160 [Streptomyces sp. SA3_actG]
 gi|318078252|ref|ZP_07985584.1| hypothetical protein SSA3_16412 [Streptomyces sp. SA3_actF]
          Length = 249

 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 3/98 (3%)

Query: 51  ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG---TPIVRIGQKPKILIPFR 107
           + G+G  CG+    L   D+D+K               HG      VR+         + 
Sbjct: 21  SSGYGIACGLAPYHLIGLDLDTKHGADPLRALALLGARHGFVLPATVRVATPSGGAHLWL 80

Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145
               G+  + +       +D+ G G Y V         
Sbjct: 81  SAPAGLTVRNSASRLAPGIDVRGTGGYLVGPGSRTTRG 118


>gi|119953768|ref|YP_950573.1| replication protein [Streptococcus phage SMP]
 gi|118430580|gb|ABK91904.1| replication protein [Streptococcus phage SMP]
          Length = 275

 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 55/190 (28%), Gaps = 20/190 (10%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKID----KLPACGFGFVCGVG 61
           K+ A      GF +IP+   +K+P    K+ ++   ++++I+    + P           
Sbjct: 4   KKAALAYQKKGFSVIPISPSNKQPMI--KFADKPAMTAQEIEDFWSQYPDSNIAVRT--- 58

Query: 62  EQPLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118
               +  DID         +        ++  T   +     K +  F+     +     
Sbjct: 59  -DKFFVIDIDLHGKHNGYESLAKWEHLNLITPTLQAKTASGGKHIFYFKHPDVSM---TQ 114

Query: 119 TESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
                  +D+      Y V          EY W       +       S   V  + + +
Sbjct: 115 MIGFLPGVDVKAHPNNYVVVAPSKTPNG-EYAW-DLEKSKEGGTMVTASRALVMAIKQEY 172

Query: 178 QEITVPLVKD 187
            +       D
Sbjct: 173 LKKNNRSELD 182


>gi|123262753|ref|XP_001289401.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121860343|gb|EAX76471.1| hypothetical protein TVAG_289810 [Trichomonas vaginalis G3]
          Length = 263

 Score = 62.2 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 77/262 (29%), Gaps = 25/262 (9%)

Query: 489 CVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPE 545
                L     K +  + + G  G+GK+T   +++     G          +I       
Sbjct: 7   WFANILQHPSAKNETALIVIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF--- 63

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
               N S+  +       +   +    +N+  +K +           Y +       +  
Sbjct: 64  ----NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANF 119

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
             +  N         D   RRY+V+        +D  +   L    T +           
Sbjct: 120 IMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMT 175

Query: 666 YISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYRE 723
                 +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y +
Sbjct: 176 LDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQ 229

Query: 724 QELNYDRKRISTRTVTLNLKQK 745
           +   Y     S RT   N+K  
Sbjct: 230 E---YGYMTASKRTFLANVKSL 248


>gi|284006692|emb|CBA71952.1| conserved hypothetical protein [Arsenophonus nasoniae]
          Length = 423

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 93/361 (25%), Gaps = 45/361 (12%)

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRC 489
            +G+          P     +        VEG     +L+ +        E    Y    
Sbjct: 79  PNGV-GFYPEPSKCPDTVYNLYMGLSVKPVEG-DCSLYLNHIRHIICSGDEIAYQYVIAW 136

Query: 490 VGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
           +   +     K    I ++ V G+GK T +  +    G   V    A  +          
Sbjct: 137 MAHLIQKPDEKPSVAIAMKSVRGAGKGTFVKPLLQILGQYGVQVNGAEHLTAKFN----- 191

Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
                  L    +V   E       +  K+  +             +             
Sbjct: 192 -----AMLANKLLVFADEATVASAKDGEKLNGIISESTFNLERKGIDP-EPMANFSRLIF 245

Query: 609 VPNKHLFVRNPDDAWW-RRYIVIPFDKPIAN----RDASFAQKLETKYTLEAKKWFLKGV 663
             N    ++        RRY+V+       +    +D S+   L      +     L  +
Sbjct: 246 ASNSTQALK---AGIKERRYLVLE-----PDGSRAQDKSYFDNLYQWVNDKGAAKLLYYL 297

Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYS 719
           + Y   G D          KEE   G     A++       E     +      L  +Y 
Sbjct: 298 QHYDISGFDRHRAPKTEALKEEILFGLTGLYAYLYAELSKDEPFDRKVRIPVTELIDNYL 357

Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
            + +     + +  +   V   + + G              K  R   G+ +     SVD
Sbjct: 358 FWCKSNGEPETEAAARSRVGKTMIRMGL------------NKLGRRGCGIGIVYELPSVD 405

Query: 780 D 780
           +
Sbjct: 406 E 406


>gi|322417789|ref|YP_004197012.1| Bifunctional DNA primase/polymerase [Geobacter sp. M18]
 gi|320124176|gb|ADW11736.1| Bifunctional DNA primase/polymerase [Geobacter sp. M18]
          Length = 643

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 19/172 (11%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL-----PACGFGFVCGVG 61
           +E A      G  + PLR    +P    +      +  +              G   G G
Sbjct: 409 REFALSYAAKGLPIFPLRPNTAKPLFPKRASGDATTDPETISWCWGKTSLANIGVPTG-G 467

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGT--PIVRIGQKPKILIPFRMNKEGIKKKKTT 119
              +        D +         E  HGT           ++L+ F   + G     + 
Sbjct: 468 ASGVAVL---VADTQFGLPSLADLEGQHGTIQTPRAQDPSGRLLLFFDCPESG---VASC 521

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
                 LD LG G + V         +E  W     + K +    +    ++
Sbjct: 522 ADFLPGLDFLGDGSFAVLPPSRIG-GQECRWVDQAQKGKAK----VPNWLLD 568



 Score = 42.2 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
            + W+ + C +GE    ++ +L   +  +         K ++ +     L++ GF     
Sbjct: 580 LKEWLAERCAMGEGFSAQATALLDDFCAW-------SGKTVTPQLFGRLLRESGF----- 627

Query: 753 REKIEKEWKSKRIIKGLKLK 772
               E++  S     GL+LK
Sbjct: 628 ----ERKKSSVYWYLGLRLK 643


>gi|83310618|ref|YP_420882.1| hypothetical protein amb1519 [Magnetospirillum magneticum AMB-1]
 gi|82945459|dbj|BAE50323.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 512

 Score = 62.2 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 102/355 (28%), Gaps = 37/355 (10%)

Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFT 487
           G  DG  +L  G  ++P         T              D V        + +  +  
Sbjct: 122 GAPDGWYNLWRGFTIEPAPA------TEDYRHHCRQFPTLTDHVLSNVAGGDKALAKWIW 175

Query: 488 RCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
                 +     +    + +RG  GSGKS L + +    G  Y +  +   ++ N     
Sbjct: 176 AWFAHMIQRPIERIGVALVLRGRQGSGKSALGDAVGMLLGPHYTLIDDPRHLVGNFNAHL 235

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
                                   D+  A +++ +             +   +       
Sbjct: 236 ASCLFLQAD---------EAVWAGDKGAAGRLRSLITSSRTLQERKNIDA-EQVRNLVRL 285

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +   +   V    +   RR+ VI        +D ++   L ++         L+ +  +
Sbjct: 286 LMTSEEDWVVPASKE--ERRFAVID-IGTGRMQDRAYFTALFSELKNGGLPHLLRFLMDF 342

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE--------NLWEESHSLAKSY 718
             + + ++         E++    DT   W  +C   G              S  L  SY
Sbjct: 343 PLEEVSLNQLPRTEALFEQKAANFDTETEWWYNCLQQGAILSGHRKWAHEVPSAGLYASY 402

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQK-----GFIGGIKREKIEKEWKSKRIIKG 768
             + E+     R+  S   + + L+Q      GF  G  + +++        I G
Sbjct: 403 LSFAERTK--ARRPFSNARLGIKLRQLIPLEYGFKPGKIKVEVDDVLPDGSRIPG 455


>gi|211731726|gb|ACJ10075.1| predicted P-loop ATPase [Bacteriophage APSE-5]
          Length = 654

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 68/523 (13%), Positives = 137/523 (26%), Gaps = 78/523 (14%)

Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKE 248
              ++     N    T  ++ + L          ++  W+ +   +A   +T    + K 
Sbjct: 120 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKT 179

Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
           +   WS   +  D E    KW              R+ + ++F    K       A R  
Sbjct: 180 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 231

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
            A        +     L   +   W    +N          K +  I   + +  + V  
Sbjct: 232 TAVATV--DEFDD---LTNTENSKWPTFKRN----------KTSGQIEATIDNAAKAVMC 276

Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
                 +   ++      F     ++         S  +       F      L      
Sbjct: 277 ADFVGVEIRFDAFRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVL 336

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------V 482
           L             +      +   KS      E +           +  +E+      V
Sbjct: 337 LAA----------DENPFDSAMEWLKSL-----EWDGIPRIETFYHTHLGTEDTTYTRAV 381

Query: 483 MDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
             Y    + G  L  G KA     + G  GSGKS+ +            ++ + +   + 
Sbjct: 382 SRYMWTALAGRVLKPGIKADMVPILVGAQGSGKSSGV----------AALSPDPTFFTEI 431

Query: 542 RPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
              E       L R + G  +  ISE    +      IK             +    ++ 
Sbjct: 432 SFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQF 488

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
           P         N+  F+ +      RR++ +                +E       + W  
Sbjct: 489 PRRSLSIGTTNEDEFLGDKTG--NRRWLPVE----------VGKMDVEGIEKDVIQLWA- 535

Query: 661 KGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699
           +  + +   G+     E       E+        +  + W+D+
Sbjct: 536 EAREVFNKTGIQFQEAEQLANQVHEKYFIKDAWQEIIERWLDE 578


>gi|211731751|gb|ACJ10090.1| predicted P-loop ATPase [Bacteriophage APSE-4]
          Length = 661

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 65/529 (12%), Positives = 145/529 (27%), Gaps = 79/529 (14%)

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243
                   ++     N    T  ++ + L          ++  W+ +   +A   +TR  
Sbjct: 121 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFE 180

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
            + K +   WS   +  D E    KW              R+ + ++F    K       
Sbjct: 181 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 232

Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
           A R   A      F            +   W    +N     S  ++    + +  ++  
Sbjct: 233 AERLKTAVATVDEFDDLTDP-----PENSKWPTFKRNKT---SGQIEATIDNAVKAVMCA 284

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
                ++  +   +         +            ++       ++E     ++  +L+
Sbjct: 285 DFVGVEIRFDAFRDEI------MFAPVGTGEWQTFTDADYSRLRITMEKRGFKAVGRELI 338

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE- 481
                    ++                +   KS      E +           +F +E+ 
Sbjct: 339 RDVVLLAAVEN-----------PFDSAMEWLKSL-----EWDGIPRIEKFYHTHFCTEDT 382

Query: 482 -----VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
                V  Y    + G  L  G KA     + G  G GKS+ +            ++ + 
Sbjct: 383 TYTRAVSRYMWTALAGRVLKPGIKANMVPILVGAQGCGKSSGV----------AALSPDP 432

Query: 536 SDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
           +   +    E       L R + G  +  ISE    +      IK             + 
Sbjct: 433 TFFTEISFAEKDD---DLARKIRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFK 489

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
              ++ P         N+  F+ +      RR++ +     +   D    +K        
Sbjct: 490 EFATQFPRRSLSIGTTNQDEFLGDKTG--NRRWLPVE----VGKMDVEGIKKDV------ 537

Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699
            + W  +  + +   G+  +  E       E+        +  + W+D+
Sbjct: 538 IQLWA-EAREVFNKTGIQFEEAEQLANQVHEKYFIKDAWQEIIERWLDE 585


>gi|320013131|gb|ADW07979.1| Bifunctional DNA primase/polymerase [Streptomyces flavogriseus ATCC
           33331]
          Length = 370

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 59/255 (23%), Gaps = 70/255 (27%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQ-------------------RLGKW----EEQLLSSEKI 46
           AK     G+ + PL  G K P                      G+W        L   +I
Sbjct: 29  AKWCARQGWPVHPLAPGRKTPAANCETCRQPGHSRAGCVCPSEGRWCHSFHAATLDQRRI 88

Query: 47  DKL----PACGFGFVCGVGEQPLYAFDIDS--------------------------KDEK 76
           D+     P  G G  CG     L   DID+                           +  
Sbjct: 89  DRWWGQNPQFGIGVACGPA--GLVVVDIDAHATKSPGRDRILPGIPISDQVNLAGLTNGF 146

Query: 77  TANTFKDTFEILHG-----TPIVRIGQKPKILIPFRM-NKEGIKKKKT---TESTQGHLD 127
                      +       + +        + + +R+ +    +         +    +D
Sbjct: 147 HTIAVLAALRDMPSPADDASTLRVRTPSGGLHVWYRVGDSRSWQCSSGSSPGRALAWQVD 206

Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187
           +   G Y VA              T      V    +L +   + L +        +   
Sbjct: 207 VRANGGYIVAPGTTTAA------GTYTPLGSVRRPAVLPDWLAQELERTGHLPAFDVPAP 260

Query: 188 KKSIIPSKTWTNNNN 202
           +     ++       
Sbjct: 261 RAVPPRAQQAVIAAG 275


>gi|320009650|gb|ADW04500.1| Bifunctional DNA primase/polymerase [Streptomyces flavogriseus ATCC
           33331]
          Length = 338

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 51  ACGFGFVCGVGEQPLYAFDID-----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
           A G+G  CG     L   D+D       D   A        +    P V +         
Sbjct: 122 ATGYGIACGRQPHRLIGIDLDIDTTHGNDSVAALRQLALQHLFTIPPTVTVLTPSGGRHL 181

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT 149
           +     G+    +       +D+ G G Y V       T   Y 
Sbjct: 182 WLTGPPGVSVPNSAGRLAPGIDVRGAGGYLVGPGSV-TTHGRYR 224


>gi|291010738|gb|ADD71726.1| DNA primase/polymerase [Leuconostoc phage 1-A4]
          Length = 251

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 27/269 (10%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLY 66
           KE A   I  G  ++ L    K P     W+ + L+ E++D+    G+G    V      
Sbjct: 3   KELAHYFIDQGIHVVALTPKKKYPNY-KGWQTKRLTIEQVDRALDSGYGLGI-VPHGEFI 60

Query: 67  AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK--ILIPFRMNKEGIKKKKTTESTQG 124
             D+D+  E  AN  ++          +   +         +                  
Sbjct: 61  VVDLDADHESGANGVENFIANFDDYATITAYKDNSTNEHRFY--------------QNTY 106

Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
            L+I   G   +   +   +K     T P + F+  D      E +    + F+ + V  
Sbjct: 107 GLNIRKTGDNAIIDGVDIFSKDNLITTLPFYYFEDLDLTKPFLEQLAPSPERFELLKVYE 166

Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244
            K  +    +  +T +N   Y  +     +      +    +   +   M          
Sbjct: 167 DKPVEVPKSN--FTKHNIENYLKKVPQFEVGGRSASYRKLIYTMVVRRGMVY-------E 217

Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFD 273
             ++   +W   G  Y EE     + +  
Sbjct: 218 DARDAIIKWDADGINYQEEEPTQFYHSIR 246


>gi|71065038|ref|YP_263765.1| hypothetical protein Psyc_0468 [Psychrobacter arcticus 273-4]
 gi|71038023|gb|AAZ18331.1| hypothetical protein Psyc_0468 [Psychrobacter arcticus 273-4]
          Length = 566

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 132/436 (30%), Gaps = 40/436 (9%)

Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL----DKITASIMNFLVSMKEDVFD 368
             +  I K  + +Y  + K  Y K +    I +  L     +     +      K+    
Sbjct: 75  AQITDIGKVTNKVYDTEQKIEYTKTQFANEIGNKKLAARWWETKHRKIAKSEVAKDLDVM 134

Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
           ++ E +         + +F     ++  ++  + +    +++          L   +   
Sbjct: 135 MAVEAQSM------FQRYFLIYGTKEVWDDVERIRLPVDTIKLARPNEYEIWLKSEARIT 188

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------SQEFLDLVSGYF-ES 479
           +   +   D    +  K  K++ I    G P    E          +   DL+      S
Sbjct: 189 IKADNIWFDPTRTKSPKHDKDIAINTFDGLPLKPIETELSDAAAMCKPITDLLLHLCEGS 248

Query: 480 EEVMDYFTRCVGMALL-GGNKAQRFIHIRGV-GGSGKSTLMNL-IKYAFGNQYVINAEAS 536
           +EV ++  R + + L   G K    +   G   G+GKS   +  +   +G+  V   +  
Sbjct: 249 KEVYEWVLRWLAIPLQQPGTKLDTALIFHGEIQGAGKSLFFDRVMTRIYGDYAVTLGQGQ 308

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
                    + K    L  L          +  +       +KQ+  G+ +     + + 
Sbjct: 309 LDSSYNDWVSDK----LYALFEEIF-----SGNDSHSQMGMVKQLITGNTIYISKKFMSG 359

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           + +       F+  N        +D   RR++V    + I     +      T    +  
Sbjct: 360 WQQDNFVNAVFLSNNMKPLSLEQND---RRHVVCYPQQKIPEPILNDVATALTDADAKML 416

Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT-----YQAWIDDCCDIGENLWEES 711
           + F   +     K      P +   +K +  + +       Y  W+ +  DI       S
Sbjct: 417 RAFYTLLMLTDLKDQTAHTPAIITASKNQLIRLSQPNWEVFYDDWVKEEFDI-PYCSCLS 475

Query: 712 HSLAKSYSEYREQELN 727
             L   Y  +  +   
Sbjct: 476 TDLYFVYRNWCHRNGE 491


>gi|256786521|ref|ZP_05524952.1| hypothetical protein SlivT_18689 [Streptomyces lividans TK24]
 gi|289770413|ref|ZP_06529791.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289700612|gb|EFD68041.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 291

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 40/167 (23%), Gaps = 36/167 (21%)

Query: 15  HNGFKLIPLRLGDKRPQRLG----------------------KWEEQLLSSEKIDKLPAC 52
             G  +IPL    K P                             +     +++  L A 
Sbjct: 21  ERGLAVIPL-ARTKLPALRSPHRDAPASEPFACRGECGRFGHGVHDASTDPDRVRALFAA 79

Query: 53  -----GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH-------GTPIVRIGQKP 100
                G+G  CG+    L   D+D+K              L           +V +    
Sbjct: 80  APWATGYGIACGLPPHHLIGVDLDTKSAAAQTDSATALRELALRHLFTIPPTVVVLTPSG 139

Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
              +      + +            +DI G G Y V      +    
Sbjct: 140 GRHLWLTGPPDHVVPNS-AGRLAPGIDIRGAGGYLVGPGSRTRHGAY 185


>gi|21222404|ref|NP_628183.1| hypothetical protein SCO4001 [Streptomyces coelicolor A3(2)]
 gi|13122165|emb|CAC32341.1| hypothetical protein 2SC10A7.05c [Streptomyces coelicolor A3(2)]
          Length = 291

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 40/167 (23%), Gaps = 36/167 (21%)

Query: 15  HNGFKLIPLRLGDKRPQRLG----------------------KWEEQLLSSEKIDKLPAC 52
             G  +IPL    K P                             +     +++  L A 
Sbjct: 21  ERGLAVIPL-ARTKLPALRSPHRDAPASEPFACRGECGRFGHGVHDASTDPDRVRALFAA 79

Query: 53  -----GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH-------GTPIVRIGQKP 100
                G+G  CG+    L   D+D+K              L           +V +    
Sbjct: 80  APWATGYGIACGLPPHHLIGVDLDTKSAAAQTDSATALRELALRHLFTIPPTVVVLTPSG 139

Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
              +      + +            +DI G G Y V      +    
Sbjct: 140 GRHLWLTGPPDHVVPNS-AGRLAPGIDIRGAGGYLVGPGSRTRHGAY 185


>gi|297193395|ref|ZP_06910793.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151754|gb|EFH31333.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 315

 Score = 61.8 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 33/141 (23%), Gaps = 8/141 (5%)

Query: 51  ACGFGFVCGVGEQPLYAFDIDSKD-----EKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
           A G+G  CG     L   D+D+K       +  +        +  T  V      + L  
Sbjct: 107 ATGYGIACGRPPHHLIGIDLDTKSSTDSMAELQHLALRHLFTIPETVTVLTPSGGRHLWL 166

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
                       +       +D+ G G Y V           Y              P  
Sbjct: 167 --TGPPDTVVPNSASRLAPGIDVRGTGGYLVGPGSV-TAHGAYRIAPGTAHLAPAPCPRA 223

Query: 166 SEEDVEYLFKFFQEITVPLVK 186
               +    +       P  +
Sbjct: 224 LLRLIAPPARTRSAAGSPHGQ 244


>gi|309700534|emb|CBI99829.1| putative primase [Escherichia coli ETEC H10407]
          Length = 782

 Score = 61.8 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 30/324 (9%)

Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYF--ESEEVMDYFTRCVGMALL-GGNKAQR 502
             +       G      E     +L+ +       +EE   Y  + +   +     K   
Sbjct: 450 CPDDVFNLYEGLALEPIEGDCTVYLNHLLQVVCAGNEEAYQYLIQWMAHIIQKPDEKPSV 509

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
            I ++ V G+GK T +  +    G        A  I                 L    +V
Sbjct: 510 AIVMKSVPGTGKGTTVKPLLQILGQYAAHINGAGHISGRFNSI----------LANKLLV 559

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
              E   +    A ++K +             +     P         N    ++     
Sbjct: 560 FADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLIFASNSTQVLQ---AG 615

Query: 623 WW-RRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
              RRY+V+    P   +   +  +L +           W LKGV      G D      
Sbjct: 616 IRERRYLVLE-PSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVDL---SGFDPQRAPQ 671

Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYSEYREQELNYDRKRIS 734
               +EE   G    + ++             +   +  +   +  +  +     ++  +
Sbjct: 672 TDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVAWSLERGEKLKEPAA 731

Query: 735 TRTVTLNLKQKGFIGGIKREKIEK 758
              +  +L Q G +   + ++   
Sbjct: 732 RSLLGKSLAQMGLVKHGRPDRGNG 755


>gi|300923441|ref|ZP_07139481.1| zinc-binding domain of primase-helicase [Escherichia coli MS 182-1]
 gi|300420268|gb|EFK03579.1| zinc-binding domain of primase-helicase [Escherichia coli MS 182-1]
          Length = 783

 Score = 61.8 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 30/324 (9%)

Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYF--ESEEVMDYFTRCVGMALL-GGNKAQR 502
             +       G      E     +L+ +       +EE   Y  + +   +     K   
Sbjct: 451 CPDDVFNLYEGLALEPIEGDCTVYLNHLLQVVCAGNEEAYQYLIQWMAHIIQKPDEKPSV 510

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
            I ++ V G+GK T +  +    G        A  I                 L    +V
Sbjct: 511 AIVMKSVPGTGKGTTVKPLLQILGQYAAHINGAGHISGRFNSI----------LANKLLV 560

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
              E   +    A ++K +             +     P         N    ++     
Sbjct: 561 FADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLIFASNSTQVLQ---AG 616

Query: 623 WW-RRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
              RRY+V+    P   +   +  +L +           W LKGV      G D      
Sbjct: 617 IRERRYLVLE-PSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVDL---SGFDPQRAPQ 672

Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYSEYREQELNYDRKRIS 734
               +EE   G    + ++             +   +  +   +  +  +     ++  +
Sbjct: 673 TDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVAWSLERGEKLKEPAA 732

Query: 735 TRTVTLNLKQKGFIGGIKREKIEK 758
              +  +L Q G +   + ++   
Sbjct: 733 RSLLGKSLAQMGLVKHGRPDRGNG 756


>gi|237703427|ref|ZP_04533908.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|226902691|gb|EEH88950.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|315285444|gb|EFU44889.1| zinc-binding domain of primase-helicase [Escherichia coli MS 110-3]
 gi|323954803|gb|EGB50583.1| hypothetical protein ERLG_03795 [Escherichia coli H263]
          Length = 783

 Score = 61.8 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 30/324 (9%)

Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYF--ESEEVMDYFTRCVGMALL-GGNKAQR 502
             +       G      E     +L+ +       +EE   Y  + +   +     K   
Sbjct: 451 CPDDVFNLYEGLALEPIEGDCTVYLNHLLQVVCAGNEEAYQYLIQWMAHIIQKPDEKPSV 510

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
            I ++ V G+GK T +  +    G        A  I                 L    +V
Sbjct: 511 AIVMKSVPGTGKGTTVKPLLQILGQYAAHINGAGHISGRFNSI----------LANKLLV 560

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
              E   +    A ++K +             +     P         N    ++     
Sbjct: 561 FADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLIFASNSTQVLQ---AG 616

Query: 623 WW-RRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
              RRY+V+    P   +   +  +L +           W LKGV      G D      
Sbjct: 617 IRERRYLVLE-PSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVDL---SGFDPQRAPQ 672

Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYSEYREQELNYDRKRIS 734
               +EE   G    + ++             +   +  +   +  +  +     ++  +
Sbjct: 673 TDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVAWSLERGEKLKEPAA 732

Query: 735 TRTVTLNLKQKGFIGGIKREKIEK 758
              +  +L Q G +   + ++   
Sbjct: 733 RSLLGKSLAQMGLVKHGRPDRGNG 756


>gi|302552580|ref|ZP_07304922.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302470198|gb|EFL33291.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 202

 Score = 61.8 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 40/160 (25%), Gaps = 31/160 (19%)

Query: 15  HNGFKLIPLRLGDKRPQRLG--------------------KWEEQLLSSEKIDKLPAC-- 52
             G  +IPL    K P                           +      +I +L A   
Sbjct: 21  ERGLAVIPLSR-TKLPALRSPHRDAPVPAPCHGECGRLGHGVHDASSDPARIRELFAAAP 79

Query: 53  ---GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL----HGTPIVRIGQKPKILIP 105
              G+G  CG+    L   D+D K    ++       +         +V +       + 
Sbjct: 80  WATGYGIACGLPPHHLIGLDLDVKTGTDSSAALRELALRHLFTIPPTVVIVTPSGGRHLW 139

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145
                E +            +DI G G Y V         
Sbjct: 140 LSGPSEVVVPNS-AGRLAPGIDIRGAGGYLVGPGSRTGQG 178


>gi|325003514|ref|ZP_08124626.1| hypothetical protein PseP1_32321 [Pseudonocardia sp. P1]
          Length = 310

 Score = 61.4 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 56/231 (24%), Gaps = 37/231 (16%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSS-EKIDKL- 49
           +  A  A   G  + P R   K P   G                WE +  +  ++I +  
Sbjct: 2   RHVALDAARAGHHVFPTRPHAKIPALHGERSCRGRGVCAESHQGWEPRATTDPDQIRRWW 61

Query: 50  --PACGFGFVCGVGEQPLYAFDIDS--------KDEKTANTFKDTFEILHGTPIVRI--- 96
                G    CG     L   D+D+            T           HG  I      
Sbjct: 62  SRTPFGVAIACGP--SRLVVIDLDTGTEPLPDWGGATTGWEVLTRAATAHGHTITDTYTV 119

Query: 97  -GQKPKILIPFRMN--KEGIKKKKTTESTQGH-LDILGCGQYFVAYNIHPKTKKEYTWTT 152
                   + +R     E    +  T  + G  +D    G Y V           YT T 
Sbjct: 120 ATPSGGHHLYYRAPQGPELRNTQGGTGHSIGPLVDTRAGGGYIVGAGTTRPEG-TYTVTC 178

Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
                 + +   +       L +   E  + L   +             + 
Sbjct: 179 HRPIADLPEWLTIMLTPPPPLLRDQPEQPLDLGPRQARAYLRAIVDGETDL 229


>gi|260663330|ref|ZP_05864221.1| bifunctional DNA primase/polymerase [Lactobacillus fermentum
           28-3-CHN]
 gi|260552182|gb|EEX25234.1| bifunctional DNA primase/polymerase [Lactobacillus fermentum
           28-3-CHN]
          Length = 263

 Score = 61.4 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 54/193 (27%), Gaps = 32/193 (16%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQ-LLSSEKIDKL----PACGFGFVCGVGEQ 63
            A Q    GF +IP     K+P    K+ ++  L+  +I+K     P             
Sbjct: 7   YAIQYAKKGFSVIPTV--GKKPLV--KFADREPLTPAEIEKFWTSHPYANIALKT----D 58

Query: 64  PLYAFDID-SKDEKTANTFKDTF--EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             +  D+D  +D                  T   R          F   KE   +     
Sbjct: 59  QFFVVDVDRHEDGDDGTLSIKNLSHPEWFNTLCQRTAHDG-YQFFFTKPKE---RISQNI 114

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +DI      Y V         K Y W        +   P++     E L    +E
Sbjct: 115 GFLPGVDIKAHPNNYVVVAPSIID-DKAYQW--------LNRKPMIQPA--EELIHLIEE 163

Query: 180 ITVPLVKDKKSII 192
              P + +KK   
Sbjct: 164 KGKPTISNKKIEA 176


>gi|28895435|ref|NP_801785.1| hypothetical protein SPs0523 [Streptococcus pyogenes SSI-1]
 gi|28810681|dbj|BAC63618.1| hypothetical protein [Streptococcus pyogenes SSI-1]
          Length = 270

 Score = 61.4 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 67/267 (25%), Gaps = 25/267 (9%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           + A      GF +IP+    K+P         + E  L        P             
Sbjct: 6   DYAIYYQQKGFSVIPISKDGKKPLVAFADKPAFTEHELRL-IWKDNPDANIALKT----D 60

Query: 64  PLYAFDIDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
             +  DID  ++         +E   L    +          I  +  K           
Sbjct: 61  TFFVIDIDVHNDVDGLKNLREWEHARLIPKTLQATTPSGGRHIYLKKPKG--VSMAQNIG 118

Query: 122 TQGHLDILGC-GQYFVAYNIHPKTKKEYTW--TTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
               +D+      Y +    +   K  Y W     P   ++ + PL     +  L   ++
Sbjct: 119 FIDGVDLKAHVNNYVLVPPSN-NAKGMYEWDMVHSPTSGEMTEAPLELINVLRELKPAYE 177

Query: 179 ------EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
                         +K + +         +    N  +  F+        N   +    +
Sbjct: 178 YDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAEFVGGLL--LRNVDVEIAYTL 235

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGST 259
               +H+T      KE  R +      
Sbjct: 236 AKMANHKTADPLSDKEFERTFKSMCDK 262


>gi|21910495|ref|NP_664763.1| hypothetical protein SpyM3_0959 [Streptococcus pyogenes MGAS315]
 gi|21910877|ref|NP_665145.1| hypothetical protein SpyM3_1341 [Streptococcus pyogenes MGAS315]
 gi|28876243|ref|NP_795448.1| hypothetical protein SpyM3_0959 [Streptococcus pyogenes phage
           315.2]
 gi|28876423|ref|NP_795618.1| hypothetical protein SpyM3_1341 [Streptococcus pyogenes phage
           315.5]
 gi|21904694|gb|AAM79566.1| conserved hypothetical protein - phage-associated [Streptococcus
           pyogenes MGAS315]
 gi|21905083|gb|AAM79948.1| conserved hypothetical protein - phage-associated [Streptococcus
           pyogenes MGAS315]
          Length = 267

 Score = 61.4 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 67/267 (25%), Gaps = 25/267 (9%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           + A      GF +IP+    K+P         + E  L        P             
Sbjct: 3   DYAIYYQQKGFSVIPISKDGKKPLVAFADKPAFTEHELRL-IWKDNPDANIALKT----D 57

Query: 64  PLYAFDIDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
             +  DID  ++         +E   L    +          I  +  K           
Sbjct: 58  TFFVIDIDVHNDVDGLKNLREWEHARLIPKTLQATTPSGGRHIYLKKPKG--VSMAQNIG 115

Query: 122 TQGHLDILGC-GQYFVAYNIHPKTKKEYTW--TTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
               +D+      Y +    +   K  Y W     P   ++ + PL     +  L   ++
Sbjct: 116 FIDGVDLKAHVNNYVLVPPSN-NAKGMYEWDMVHSPTSGEMTEAPLELINVLRELKPAYE 174

Query: 179 ------EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
                         +K + +         +    N  +  F+        N   +    +
Sbjct: 175 YDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAEFVGGLL--LRNVDVEIAYTL 232

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGST 259
               +H+T      KE  R +      
Sbjct: 233 AKMANHKTADPLSDKEFERTFKSMCDK 259


>gi|290959118|ref|YP_003490300.1| hypothetical protein SCAB_47031 [Streptomyces scabiei 87.22]
 gi|260648644|emb|CBG71756.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 289

 Score = 61.4 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 48/201 (23%), Gaps = 33/201 (16%)

Query: 15  HNGFKLIPLRLGDKRPQRLG--------------------KWEEQLLSSEKIDKLP---- 50
             G  +IPL    K P                           +      ++ +L     
Sbjct: 21  ERGLAVIPLSR-SKLPALRSPHRDDPHPRPCHGECGRFGHGVHDASTDPRRVRELFSAAP 79

Query: 51  -ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE-----ILHGTPIVRIGQKPKILI 104
            A G+G  CG+    L   D+D+K    ++             +  T +V      + + 
Sbjct: 80  WATGYGIACGLHPHHLIGVDLDTKSGTDSSAALRELALRHLFTIPETVVVLTPSGGRHIW 139

Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
                   +    +       +DI G G Y V            T     H       P 
Sbjct: 140 L--TGPPDVVVPNSASRLAPGIDIRGAGGYLVGPGSRTDHGVYGTAPGTSHLSPAPCPPA 197

Query: 165 LSEEDVEYLFKFFQEITVPLV 185
           L                 P+ 
Sbjct: 198 LLRLLSPPPRTNPAGPAGPVG 218


>gi|289167297|ref|YP_003445564.1| hypothetical protein smi_0424 [Streptococcus mitis B6]
 gi|288906862|emb|CBJ21696.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 265

 Score = 61.4 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 78/282 (27%), Gaps = 34/282 (12%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63
           + A      G+ +IP+    KR   + K++++  S  +I +     P     +       
Sbjct: 6   DYALHYQKLGYSVIPIDKKSKR--AITKFKDKTFSENEIRRFWHEQPDANIAWRT----T 59

Query: 64  PLYAFDIDSK-DEKTANTFKDT-FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
             +  DID    E    + K+          +          I  +  K    +      
Sbjct: 60  DFFVIDIDVSVTENGYESLKEWELSQYIPKTLTATTPSGGKHIFLKKPKGI--ELSQDIR 117

Query: 122 TQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
            +  +DI      Y +    +   K  Y W                    E + +   EI
Sbjct: 118 VKPGIDIKANKNNYVLVAPSN-NAKGSYKWDKST----------------EQMAEAPAEI 160

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHH 238
              L   K+   P    T+ +  +++++    F          G  +  +   +   +  
Sbjct: 161 ISILQTSKQPKEPMSFTTDYSRGEFSSKTAKLFEQVVFGLGDKGGRNNALASFIGGLLMR 220

Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
                +              +   +  +  +++   +E+   
Sbjct: 221 GVDVDATYLLAKIANHYTPDSLPTDELDRTFESMVRKEMDRR 262


>gi|297200823|ref|ZP_06918220.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
           sviceus ATCC 29083]
 gi|297147743|gb|EFH28715.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
           sviceus ATCC 29083]
          Length = 264

 Score = 61.1 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 7/104 (6%)

Query: 51  ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE-----ILHGTPIVRIGQKPKILIP 105
           A G+G  CG+    L   D+D+K    ++             +  T +V      + L  
Sbjct: 82  ATGYGIACGLPPHHLIGVDLDTKSGTDSSAALRELALRHLFTIPDTVVVLTPSGGRHLWL 141

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT 149
                  +            +DI G G Y V            T
Sbjct: 142 TGPPDAAVPNSAGR--LAPGIDIRGAGGYLVGPGSRTDHGTYTT 183


>gi|239630758|ref|ZP_04673789.1| prophage Lp3 protein 7 [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|239527041|gb|EEQ66042.1| prophage Lp3 protein 7 [Lactobacillus paracasei subsp. paracasei
           8700:2]
          Length = 275

 Score = 61.1 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 47/177 (26%), Gaps = 26/177 (14%)

Query: 13  AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67
              + F + PL  G + P      +++     E+  K     P    G         +  
Sbjct: 11  YQQHCFAVYPLAPGTRTPLNGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 66

Query: 68  FDID--SKDEKTANTFKDTFEI-----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116
           FDID   K E   N       +        +  V       + I F   KE         
Sbjct: 67  FDIDMGHKSEVNGNESLAKLSVEGRAGQIPSSYVETTPNGGLHIFFTYPKELKLTSRSDL 126

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
            +    +  LD +  G     +    +         P    K+       +  ++ +
Sbjct: 127 FSNNGEKTGLDYIATG--VPVFPSIRENGMY----QPLKGHKITKLAPAPQWLLDEI 177


>gi|294630239|ref|ZP_06708799.1| bifunctional DNA primase/polymerase [Streptomyces sp. e14]
 gi|292833572|gb|EFF91921.1| bifunctional DNA primase/polymerase [Streptomyces sp. e14]
          Length = 291

 Score = 61.1 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 40/160 (25%), Gaps = 29/160 (18%)

Query: 15  HNGFKLIPL--------------RLGDKRPQRLG-------KWEEQLLSSEKIDKLPAC- 52
             G  +IPL                   RP   G          +      ++  L A  
Sbjct: 21  ERGLAVIPLSRTKLPALRSPHRDDPDPGRPPCRGECGRFGHGVHDASADPARVRALFAAA 80

Query: 53  ----GFGFVCGVGEQPLYAFDIDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
               G+G  CG+    L   D+D+K   D   A               V +         
Sbjct: 81  PRATGYGIACGLPPYHLIGVDLDTKAGTDAVAALRGLARRHRFTVPATVVVLTPSGGRHL 140

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145
           +      +    +       +DI G G Y V      +  
Sbjct: 141 WLSGPADVVVPNSASRLAPGIDIRGAGGYLVGPGSRTERG 180


>gi|320169592|gb|EFW46491.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 109

 Score = 61.1 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
           +V+ SE  E   +N   +K++TG D    R  YG      P +F PF   N+   V   D
Sbjct: 1   MVVFSELEEGVPMNEVFVKEITGEDGTGFRELYGKE-VNRPITFVPFFSTNEIPQVT-RD 58

Query: 621 DAWWRRYIVIPFDKPIANRDAS-FAQKLETK-------YTLEAKKWFLKGV 663
            A WRR   + +     ++    +    E K       Y      WF++G 
Sbjct: 59  PALWRRLTNVQWSAMAEDQKPGVYKADPELKDLVKTKEYLESWLYWFIQGA 109


>gi|123319031|ref|XP_001293114.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121869555|gb|EAX80184.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 297

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 87  WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                    Y +       +    +  N         D   RRY+V+        +D  +
Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEY 255

Query: 644 AQKL 647
              L
Sbjct: 256 FDDL 259


>gi|240145190|ref|ZP_04743791.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257202746|gb|EEV01031.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 190

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 4/126 (3%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
                T  ++      +  ++        +  Q+G L ++ G  +    E  +       
Sbjct: 68  KNIPRTISNIVEIMKLAAHAESFPPKPDEIHVQNGTLRID-GSFLAGRSE-IVRSRFPID 125

Query: 460 FVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
           +         +L  +S      E +  F   +G  L+   K QR + ++G GG GKS + 
Sbjct: 126 YNPQAGKPVVWLRFLSDLL-YPEDIPTFQEYIGYCLIPSTKGQRMMILKGEGGEGKSQIG 184

Query: 519 NLIKYA 524
            ++   
Sbjct: 185 PVLARL 190


>gi|85059138|ref|YP_454840.1| hypothetical protein SG1160 [Sodalis glossinidius str. 'morsitans']
 gi|84779658|dbj|BAE74435.1| hypothetical protein [Sodalis glossinidius str. 'morsitans']
          Length = 214

 Score = 61.1 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 51/151 (33%), Gaps = 12/151 (7%)

Query: 19  KLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL--PACGFGFVCGVGEQPLYAFDIDSKDE 75
             +P     K+    + +W   L++   +D    P  G     G     L A D D++DE
Sbjct: 55  AKVPSLYNRKKQIAGIRQWASMLITPAMLDNWEEPDYGICVRTGR---GLIALDCDNEDE 111

Query: 76  KTANTFKDTFEILHG-TPIVRIGQ-KPKILIPFRMNKEGIK---KKKTTESTQGHLDILG 130
                 +       G  P  R  +   K L       E  K   +    +     +++L 
Sbjct: 112 GHHAIIEQVLRDTLGCLPPCRFRKNANKCLYLLNAPFERRKGVLRLPDEDGRPAQIELLA 171

Query: 131 CGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
            GQ F+A  IHP +     W     ++   +
Sbjct: 172 TGQQFMAAGIHP-SGARIVWRFALSKYPKSN 201


>gi|123149209|ref|XP_001277675.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121822198|gb|EAX64745.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 281

 Score = 60.7 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 71/252 (28%), Gaps = 24/252 (9%)

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
            Q L+   +  +   +LD+    L     + D         T              E   
Sbjct: 22  KQKLKKIKVVQVGMKMLDAWDILL---SKLEDFSVRGIKFYTPSPNFYSIFTGYKYEQVE 78

Query: 466 SQE-----FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517
            +E     +LD V       +E V +Y        L     K +  + I G  G+GK+T 
Sbjct: 79  WKENVIEAWLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTF 138

Query: 518 M-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
             +++     G          +I           N S+  +       +   +    +N+
Sbjct: 139 FTDILCKLLEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNS 191

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
             +K +           Y +       +    +  N         D   RRY+V+     
Sbjct: 192 DALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSE 247

Query: 636 IANRDASFAQKL 647
              +D  +   L
Sbjct: 248 AHMQDTEYFDDL 259


>gi|9633552|ref|NP_050964.1| hypothetical protein APSE-1_03 [Acyrthosiphon pisum bacteriophage
           APSE-1]
 gi|6118000|gb|AAF03948.1|AF157835_3 P3 [Endosymbiont phage APSE-1]
          Length = 752

 Score = 60.7 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 67/530 (12%), Positives = 145/530 (27%), Gaps = 81/530 (15%)

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243
                   ++     N    T  ++ + L          ++  W+ +   +A   +TR  
Sbjct: 212 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNRAENYPSWVDMGNRLAWFKDTRFE 271

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
            + K +   WS   +  D E    KW              R+ + ++F    K       
Sbjct: 272 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 323

Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
           A R   A      F            +   W    +N          K +  I   + + 
Sbjct: 324 AERLKTAVATVDAFDDLTDPT-----ENSKWPTFKRN----------KTSGQIEATIDNA 368

Query: 363 KEDVFDLSEEPEDNNKNSKSPR-FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
            + V   +    +   ++      +     +      ++       ++E     ++  +L
Sbjct: 369 AKAVMCANFVGVEIRFDTFRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGREL 428

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
           +         ++                +   KS      E +           +  +E+
Sbjct: 429 IRDVVLLAAVEN-----------PFDSAMEWLKSL-----EWDGIPRIETFYHTHLGTED 472

Query: 482 ------VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
                 V  Y    + G  L  G KA     + G  GSGKS+ +            ++ +
Sbjct: 473 TAYTRAVSRYMWTALAGRVLKPGIKADMVPILVGAQGSGKSSGV----------AALSPD 522

Query: 535 ASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
            +   +    E       L R + G  +  ISE    +      IK             +
Sbjct: 523 PTFFTEISFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKF 579

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
               ++ P         N+  F+ +      RR++ +     +   D    +K       
Sbjct: 580 KEFATQFPRRSLSIGTTNEDEFLGDKTG--NRRWLPV----AVGKMDVEGIKKDV----- 628

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699
             + W  +  + +   G+     E       E+        +  + W+D+
Sbjct: 629 -IQLWA-EAREVFNETGIQFQEAEQLANQVHEKYFIKDAWQEIIERWLDE 676


>gi|331700426|ref|YP_004397385.1| bifunctional DNA primase/polymerase [Lactobacillus buchneri NRRL
           B-30929]
 gi|329127769|gb|AEB72322.1| Bifunctional DNA primase/polymerase [Lactobacillus buchneri NRRL
           B-30929]
          Length = 254

 Score = 60.7 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 43/162 (26%), Gaps = 17/162 (10%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA----CGFGFVCGVGEQPL 65
           A +    G K+ PL+   KRP     + +   +  ++ +          G      +  +
Sbjct: 8   AHKLAKQGLKVFPLQANSKRPVTAHGYLDATDNLIQLGEWFDNDRQYNLGLRL--ADTGI 65

Query: 66  YAFDID-SKDEKTANTFKDTFEILHGTPIVRIGQKP--KILIPFRMNKEGIKKKKTTEST 122
              DID           K               Q P   +   F+ N++   K       
Sbjct: 66  VVVDIDHHTQIDGRKVLKQWQTKGMTLIPQYAEQTPHDGLHYFFKTNQKLPDKV-----I 120

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
              +++    +  +         K Y          +   P+
Sbjct: 121 VPSIELKT--KQIMIAPSQLD-GKPYQTIKGTDLTHLSPLPV 159


>gi|211731774|gb|ACJ10104.1| predicted P-loop ATPase [Bacteriophage APSE-7]
          Length = 654

 Score = 60.7 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 66/524 (12%), Positives = 144/524 (27%), Gaps = 80/524 (15%)

Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKE 248
              ++     N    T  ++ + L          ++  W+ +   +A   +T    + K 
Sbjct: 120 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKT 179

Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
           +   WS   +  D E    KW              R+ + ++F    K       A R  
Sbjct: 180 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 231

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
            A        +     L   +   W    +N          K +  I   + +  + V  
Sbjct: 232 TAVATV--DEFDD---LTNTENSKWPTFKRN----------KTSGQIEATIDNAAKAVMY 276

Query: 369 LSEEPEDNNKNSKSPR-FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
                 +   ++      +     +      ++       ++E     ++  +L+     
Sbjct: 277 ADFVGVEIRFDTFRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVL 336

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------ 481
               ++                +   KS      E +           +  +E+      
Sbjct: 337 LAAVEN-----------PFDSAMEWLKSL-----EWDGIPRIETFYHTHLGTEDTTYTRA 380

Query: 482 VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           V  Y    + G  L  G KA     + G  GSGKS+ +            ++ + +   +
Sbjct: 381 VSRYMWTALAGRVLKPGIKADMVPILVGAQGSGKSSGV----------AALSPDPTFFTE 430

Query: 541 NRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
               E       L R + G  +  ISE    +      IK             +    ++
Sbjct: 431 ISFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQ 487

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
            P         N+  F+ +      RR++ +     +   D    +K         + W 
Sbjct: 488 FPRRSLSIGTTNEDEFLGDKTG--NRRWLPVE----VGKMDVEGIKKDV------IQLWA 535

Query: 660 LKGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699
            +  + +   G+     E       E+        +  + W+D+
Sbjct: 536 -EAREVFNETGIQFQEAEQLANQVHEKYFIKDAWQEIIERWLDE 578


>gi|123327509|ref|XP_001293697.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121870825|gb|EAX80767.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 273

 Score = 60.7 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 71/252 (28%), Gaps = 24/252 (9%)

Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
            Q L+   +  +   +LD+    L     + D         T              E   
Sbjct: 22  KQKLKKIKVVQVGMKMLDAWDILL---SKLEDFSVRGIKFYTPSPNFYSIFTGYKYEQVE 78

Query: 466 SQE-----FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517
            +E     +LD V       +E V +Y        L     K +  + + G  G+GK+T 
Sbjct: 79  WKENVIEAWLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIVIGKQGTGKNTF 138

Query: 518 M-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
             +++     G          +I           N S+  +       +   +    +N+
Sbjct: 139 FTDILCKLLEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNS 191

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
             +K +           Y +       +    +  N         D   RRY+V+     
Sbjct: 192 DALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSE 247

Query: 636 IANRDASFAQKL 647
              +D  +   L
Sbjct: 248 AHMQDTEYFDDL 259


>gi|332855689|ref|ZP_08435998.1| hypothetical protein HMPREF0021_03588 [Acinetobacter baumannii
           6013150]
 gi|332870668|ref|ZP_08439386.1| hypothetical protein HMPREF0020_03038 [Acinetobacter baumannii
           6013113]
 gi|332727315|gb|EGJ58754.1| hypothetical protein HMPREF0021_03588 [Acinetobacter baumannii
           6013150]
 gi|332732052|gb|EGJ63324.1| hypothetical protein HMPREF0020_03038 [Acinetobacter baumannii
           6013113]
          Length = 483

 Score = 60.7 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 119/338 (35%), Gaps = 31/338 (9%)

Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKS-TLM 518
            E  +  + L++      +E + +  + +   L  +G   A   +    + GSGKS   +
Sbjct: 149 YEDCKGIMTLINDLCDGEKEAVLFLLKWLAFPLQNIGAKMATCVLMHGHIHGSGKSLMFV 208

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
           +++K  +G  +    +A    Q       K       L G    I+    +++ +    I
Sbjct: 209 SIMKKIYGEYHTTVGQAQLDNQYNEWIENK-------LFGVFEEIVDNKKKHNVM--GMI 259

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIA 637
           K +  G+ +     + + +  +    T F+  N     +   D    RR++V+    P  
Sbjct: 260 KHLITGETLYISKKFVSGWEMNNHLNTVFLSNNTQPLPIEEKD----RRFLVL---NPCK 312

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---EE-RQGTDTY 693
           + D    +++  +      + F   +           +      AK    +  R G DT+
Sbjct: 313 DLDGPLHERVMQELKTNGVQAFYTYLMGLDLTDFHEHVKPPMTIAKRTMIDYSRAGFDTF 372

Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
                +       +  +S  L K++ ++          +IS +   +  K+ G +   K 
Sbjct: 373 YHEWKNGDTKFPYVSCKSEQLYKAFGQWSRTTGE---HQISMKRFIIEGKKHGIVPSDKA 429

Query: 754 EKIEKEWKSKR---IIKGLKLKPAFESVDDNSNIIDFK 788
           +  + +  S +   II G K K   E +     I  F+
Sbjct: 430 KHWKGKRSSGQNKVIIIGEKPKDEQEQLWLGLQIEQFQ 467


>gi|306822937|ref|ZP_07456313.1| hypothetical protein HMPREF0168_0873 [Bifidobacterium dentium ATCC
           27679]
 gi|304553569|gb|EFM41480.1| hypothetical protein HMPREF0168_0873 [Bifidobacterium dentium ATCC
           27679]
          Length = 583

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/383 (12%), Positives = 106/383 (27%), Gaps = 51/383 (13%)

Query: 313 KAMFSIYKKGHFLYTADTKAWYKKD-KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
             M+   K G      D K  Y+++   N  +   T  K+T+    + V  K+ +  +  
Sbjct: 91  AEMWWDVKNGWLRVGDDDKTLYRRNFDENEGVLKNTYKKVTSVEAEYEVPAKKFIKGMKR 150

Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
           E                   +  +            +       S T             
Sbjct: 151 EAA--------------AVLKTLSFPRVHAGIQFGSTAFIREYTSDTES----------- 185

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
              +  L    +        +             ++ +++ ++     E+  D   R   
Sbjct: 186 --CVTQLPAEDRRNLEP-FEVHFDCEFDAKLAAEARRWIEWMTV---DEKSADNLARMFA 239

Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
             +L  +K        G G +GK T+   +     +        +   +   P    +  
Sbjct: 240 TPVLERHK-ALTFIGYGRGRNGKGTI---VSNMMDDPTTAAFTTTFNSRIMFPTGSPSTI 295

Query: 552 SL---IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
                + L+G       E           +K ++ GD +TAR     +      + T  I
Sbjct: 296 QEQAPLNLVGKLWAFEPECAPIGSAQMTALKALSTGDSITARRLQQQS-VNVNNTATLVI 354

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
             N+ + + + +    RR++ I F     + + +       KY      + +     ++ 
Sbjct: 355 FTNESVCLPDTEAG-DRRFVNIRFKDGHTDAEFAPLWAFFNKY--GVAPFMMASCLLWLE 411

Query: 669 KGLDVDIPEVCL----KAKEEER 687
                + P V       A  E  
Sbjct: 412 S----EDPHVVNINDGDAMSEYE 430


>gi|157311092|ref|YP_001469087.1| gp088 [Lactococcus phage KSY1]
 gi|108861432|gb|ABG21631.1| gp088 [Lactococcus phage KSY1]
          Length = 445

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 13/151 (8%)

Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
              P        Y+    Q ++   V D   I   K    ++  +    ++   L     
Sbjct: 21  HKYPTKPAVGEPYITDEKQGLSPYRVSDFAKIRVKKEIKQSSENKRVGMDLIPLLEVIDP 80

Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279
              +  + +W+ V MA+  E        E    WS++   Y       KWD+F       
Sbjct: 81  --NDLEYHDWVKVGMALKQE----GYQFETWDTWSQRDVRYKSSEMQDKWDSFQTG---- 130

Query: 280 TAKKRSTFTSLFYHHGKLIPKGLLASRFSDA 310
              +  +  ++     +   +   A   +  
Sbjct: 131 ---QGLSGATIIMMAKERGWEPPKAKGSNKD 158


>gi|123220789|ref|XP_001285421.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121848929|gb|EAX72491.1| hypothetical protein TVAG_548660 [Trichomonas vaginalis G3]
          Length = 236

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E+V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 53  WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 112

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 113 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 165

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                    Y +       +    +  N         D   RRY+V+        +D  +
Sbjct: 166 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 221

Query: 644 AQKL 647
              L
Sbjct: 222 FDDL 225


>gi|212499708|ref|YP_002308516.1| predicted P-loop ATPase [Bacteriophage APSE-2]
 gi|238898740|ref|YP_002924422.1| APSE-2 prophage; predicted P-loop ATPase [Bacteriophage APSE-2]
 gi|211731677|gb|ACJ10165.1| predicted P-loop ATPase [Bacteriophage APSE-2]
 gi|229466500|gb|ACQ68274.1| APSE-2 prophage; predicted P-loop ATPase [Bacteriophage APSE-2]
          Length = 745

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/524 (12%), Positives = 144/524 (27%), Gaps = 80/524 (15%)

Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKE 248
              ++     N    T  ++ + L          ++  W+ +   +A   +T    + K 
Sbjct: 211 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKT 270

Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
           +   WS   +  D E    KW              R+ + ++F    K       A R  
Sbjct: 271 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 322

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
            A        +     L   +   W    +N          K +  I   + +  + V  
Sbjct: 323 TAVATV--DEFDD---LTNTENSKWPTFKRN----------KTSGQIEATIDNAAKAVMY 367

Query: 369 LSEEPEDNNKNSKSPR-FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
                 +   ++      +     +      ++       ++E     ++  +L+     
Sbjct: 368 ADFVGVEIRFDTFRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVL 427

Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------ 481
               ++                +   KS      E +           +  +E+      
Sbjct: 428 LAAVEN-----------PFDSAMEWLKSL-----EWDGIPRIETFYHTHLGTEDTTYTRA 471

Query: 482 VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           V  Y    + G  L  G KA     + G  GSGKS+ +            ++ + +   +
Sbjct: 472 VSRYMWTALAGRVLKPGIKADMVPILVGAQGSGKSSGV----------AALSPDPTFFTE 521

Query: 541 NRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
               E       L R + G  +  ISE    +      IK             +    ++
Sbjct: 522 ISFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQ 578

Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
            P         N+  F+ +      RR++ +     +   D    +K         + W 
Sbjct: 579 FPRRSLSIGTTNEDEFLGDKTG--NRRWLPVE----VGKMDVEGIKKDV------IQLWA 626

Query: 660 LKGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699
            +  + +   G+     E       E+        +  + W+D+
Sbjct: 627 -EAREVFNETGIQFQEAEQLANQVHEKYFIKDAWQEIIERWLDE 669


>gi|123170979|ref|XP_001279611.1| Poxvirus D5 protein [Trichomonas vaginalis G3]
 gi|121829616|gb|EAX66681.1| Poxvirus D5 protein [Trichomonas vaginalis G3]
          Length = 293

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 74/262 (28%), Gaps = 32/262 (12%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 53  WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 112

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 113 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 165

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                    Y +       +    +  N         D   RRY+V+        +D  +
Sbjct: 166 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 221

Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID--- 698
              L    T +                 +   IP    + ++   +   +    +ID   
Sbjct: 222 FDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--HTEERQTLLEANKSVYELFIDETN 279

Query: 699 -DCCDIGENLWEESHSLAKSYS 719
            +C D          SL   Y 
Sbjct: 280 FECLDE--------RSLYDEYK 293


>gi|94994241|ref|YP_602339.1| phage protein [Streptococcus phage 10750.2]
 gi|94547749|gb|ABF37795.1| phage protein [Streptococcus phage 10750.2]
          Length = 270

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 67/267 (25%), Gaps = 25/267 (9%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
           + A      GF +IP+    K+P         + E  L        P             
Sbjct: 6   DYAIYYQQKGFSIIPISKDGKKPLVAFADKPAFTEHELRL-IWKDNPDANIALKT----D 60

Query: 64  PLYAFDIDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
             +  DID  ++         +E   L    +          I  +  +           
Sbjct: 61  TFFVIDIDVHNDVDGLKNLREWEHARLIPKTLQATTPSGGRHIYLKKPQG--VSMAQNIG 118

Query: 122 TQGHLDILGC-GQYFVAYNIHPKTKKEYTW--TTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
               +D+      Y +    +   K  Y W     P   ++ + PL     +  L   ++
Sbjct: 119 FIDGVDLKAHVNNYVLVPPSN-NAKGMYEWDMVHSPTSGEMTEAPLELINVLRELRPAYE 177

Query: 179 ------EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
                         +K + +         +    N  +  F+        N   +    +
Sbjct: 178 YDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAEFVGGLL--LRNVDVEIAYTL 235

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGST 259
               +H+T      KE  R +      
Sbjct: 236 AKMANHKTADPLSDKEFERTFKSMCDK 262


>gi|123419637|ref|XP_001305603.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121887131|gb|EAX92673.1| hypothetical protein TVAG_317310 [Trichomonas vaginalis G3]
          Length = 338

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E+V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 87  WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                    Y +       +    +  N         D   RRY+V+        +D  +
Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEY 255

Query: 644 AQKL 647
              L
Sbjct: 256 FDDL 259


>gi|123155672|ref|XP_001278283.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121824682|gb|EAX65353.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 325

 Score = 60.7 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 116 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 175

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 176 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 228

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                    Y +       +    +  N         D   RRY+V+        +D  +
Sbjct: 229 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 284

Query: 644 AQKL 647
              L
Sbjct: 285 FDDL 288


>gi|257483927|ref|ZP_05637968.1| hypothetical protein PsyrptA_11777 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331013142|gb|EGH93198.1| hypothetical protein PSYTB_26441 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 380

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 65/210 (30%), Gaps = 18/210 (8%)

Query: 463 GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNL- 520
            E  + F+  +  +F  +   DYF   + M++     K      +R   G GK       
Sbjct: 72  KEQVEPFISFLRRWFPDDSERDYFGWWIAMSVRHQEQKIIATPLLRSEHGVGKGFFAETL 131

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           +    G+         D++ +              + G  ++++ E   + +     +K 
Sbjct: 132 LPGLLGSTAAALCHLKDVVGDFNET----------VEGKTLLVVDEVYRSKKSTTDSLKS 181

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLFVRNPDDAWWRRYIVIPFDKPIANR 639
           +     +T R  +              I  N     V    D   RR+ +  F +     
Sbjct: 182 IQANATLTLRRKHL-PVVVIDNYINFCITSNDHIPLVIESGD---RRFWIPAFIRH-KES 236

Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            +   + L  ++         + V+ Y+ +
Sbjct: 237 KSETDRFLNDQFKPWLLNGGFQLVRDYLEQ 266


>gi|320013061|gb|ADW07910.1| Bifunctional DNA primase/polymerase [Streptomyces flavogriseus ATCC
           33331]
          Length = 346

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 55/236 (23%), Gaps = 71/236 (30%)

Query: 1   MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRL-----------------------GKWE 37
           MP  +  + A+      + + PL  G K P                            + 
Sbjct: 1   MPQPRPADVARWLAGRHWPVHPLAPGRKTPAANCEQCRVRSHEPSSCPCQARGLWCHGFH 60

Query: 38  EQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDID-----SKD-------------- 74
                  +++      P  G G  CG     L   D+D       D              
Sbjct: 61  SATTDLARVEDWWSREPRAGVGVSCGPAH--LVVLDVDAHAAPVPDRNRLLPGIPIPEQV 118

Query: 75  ------------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES- 121
                          A   K+       T +        + I +   +  ++ + +T S 
Sbjct: 119 DLAGLASGFDTLALLAAYRKEANPAEDETTLRVRTPSGGLHIWYVNTEPAVRYRSSTGSS 178

Query: 122 ----TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
                   +D+   G Y VA          YT         V D   L       L
Sbjct: 179 PRTALAWQVDVRAHGGYIVAPTTRTSAG-AYTPLGA-----VRDPAPLPAWLAAEL 228


>gi|309801266|ref|ZP_07695395.1| hypothetical protein HMPREF9003_0419 [Bifidobacterium dentium
           JCVIHMP022]
 gi|308222155|gb|EFO78438.1| hypothetical protein HMPREF9003_0419 [Bifidobacterium dentium
           JCVIHMP022]
          Length = 526

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/383 (12%), Positives = 106/383 (27%), Gaps = 51/383 (13%)

Query: 313 KAMFSIYKKGHFLYTADTKAWYKKD-KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
             M+   K G      D K  Y+++   N  +   T  K+T+    + V  K+ +  +  
Sbjct: 34  AEMWWDVKNGWLRVGDDDKTLYRRNFDENEGVLKNTYKKVTSVEAEYEVPAKKFIKGMKR 93

Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
           E                   +  +            +       S T             
Sbjct: 94  EAA--------------AVLKTLSFPRVHAGIQFGSTAFIREYTSDTES----------- 128

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
              +  L    +        +             ++ +++ ++     E+  D   R   
Sbjct: 129 --CVTQLPAEDRRNLEP-FEVHFDCEFDAKLAAEARRWIEWMTV---DEKSADNLARMFA 182

Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
             +L  +K        G G +GK T+   +     +        +   +   P    +  
Sbjct: 183 TPVLERHK-ALTFIGYGRGRNGKGTI---VSNMMDDPTTAAFTTTFNSRIMFPTGSPSTI 238

Query: 552 SL---IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
                + L+G       E           +K ++ GD +TAR     +      + T  I
Sbjct: 239 QEQAPLNLVGKLWAFEPECAPIGSAQMTALKALSTGDSITARRLQQQS-VNVNNTATLVI 297

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
             N+ + + + +    RR++ I F     + + +       KY      + +     ++ 
Sbjct: 298 FTNESVCLPDTEAG-DRRFVNIRFKDGHTDAEFAPLWAFFNKY--GVAPFMMASCLLWLE 354

Query: 669 KGLDVDIPEVCL----KAKEEER 687
                + P V       A  E  
Sbjct: 355 S----EDPHVVNINDGDAMSEYE 373


>gi|239908829|ref|YP_002955571.1| hypothetical protein DMR_41940 [Desulfovibrio magneticus RS-1]
 gi|239798696|dbj|BAH77685.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 873

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 78/260 (30%), Gaps = 19/260 (7%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK--LPACGFGFVCGVGEQP 64
            E+ +  I    +   ++L  K P     W +      + +      C  G V G     
Sbjct: 17  AERIEWLIRMAQRFNFIQLKGKVPIES-GWAKYSYEKRQFNHTDFLNCNAGIVTG-PSSG 74

Query: 65  LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES--- 121
           +   DID++   +     + FE+        +         +   +         +    
Sbjct: 75  VIVLDIDNQVLFSRFVASNNFEVRD---TFTVKTAKGEHRYYLYPENKEVNSFPVKHPLF 131

Query: 122 -TQGHLDILGCGQYFVAY-NIHPKTKKEYTWTTPPHRFKVEDTPLLSE---EDVEYLFKF 176
                 D+ G G   VA  +IHP+T + Y         +  D  L+ +   +  + ++  
Sbjct: 132 KKVSIFDVRGVGGQVVAPFSIHPETNEIYRIINDVEVAEAPDWLLMDKSNYDLSDLMYVS 191

Query: 177 FQEITVPLVKDKKSIIPSKTW----TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
             +       +K   +  + +     N  +    +  I   +       +N     +I +
Sbjct: 192 PGDCYNVEYLNKLIQMVGEEYHGYIVNGADLGSRSEIIAKVIMKLISAGFNDDEVTYILL 251

Query: 233 VMAVHHETRGSSKGKEIARR 252
              +  + +    G+    +
Sbjct: 252 NFKIGDKAKEKGSGQLEWIQ 271


>gi|330832274|ref|YP_004401099.1| replication protein [Streptococcus suis ST3]
 gi|329306497|gb|AEB80913.1| replication protein [Streptococcus suis ST3]
          Length = 275

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 56/190 (29%), Gaps = 20/190 (10%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKID----KLPACGFGFVCGVG 61
           K+ A      GF +IP+   +K+P    K+ ++   ++++I+    + P           
Sbjct: 4   KKAALAYQKKGFSVIPISPSNKQPMI--KFADKPAMTAQEIEDFWSQYPDSNIAVRT--- 58

Query: 62  EQPLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118
               +  DID         +  +     ++  T   +     K +  F+     +     
Sbjct: 59  -DKFFVIDIDLHGKHNGYESLANWEHLNLITPTLQAKTASGGKHIFYFKHPDVSM---TQ 114

Query: 119 TESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
                  +D+      Y +          EY W       +       S   V  + + +
Sbjct: 115 MIGFLPGVDVKAHPNNYVLVAPSKTPKG-EYAW-DLEKSKEGGTMVTASRALVMAIKQEY 172

Query: 178 QEITVPLVKD 187
            +       D
Sbjct: 173 LKKNNRSELD 182


>gi|300939256|ref|ZP_07153935.1| zinc-binding domain of primase-helicase [Escherichia coli MS 21-1]
 gi|300455855|gb|EFK19348.1| zinc-binding domain of primase-helicase [Escherichia coli MS 21-1]
          Length = 783

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 30/324 (9%)

Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYF--ESEEVMDYFTRCVGMALL-GGNKAQR 502
             +       G      E     +L+ +       +EE   Y  + +   +     K   
Sbjct: 451 CPDDVFNLYEGLALEPIEGDCTVYLNHLLQAVCAGNEEAYQYLIQWMAHIIQKPDEKPSV 510

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
            I ++ V G+GK T +  +    G        A  I                 L    +V
Sbjct: 511 AIVMKSVPGTGKGTTVKPLLQILGQYAAHINGAGHISGRFNSI----------LANKLLV 560

Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
              E   +    A ++K +             +     P         N    ++     
Sbjct: 561 FADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLIFASNSTQVLQ---AG 616

Query: 623 WW-RRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
              RRY+V+    P   +   +  +L +           W LKGV      G D      
Sbjct: 617 IRERRYLVLE-PSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVDL---SGFDPQRAPQ 672

Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYSEYREQELNYDRKRIS 734
               +EE   G    + ++             +   +  +   +  +  +     ++  +
Sbjct: 673 TDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVAWSLERGEKLKEPAA 732

Query: 735 TRTVTLNLKQKGFIGGIKREKIEK 758
              +  +L Q G +   + ++   
Sbjct: 733 RSLLGKSLAQMGLVKHGRPDRGNG 756


>gi|123179369|ref|XP_001280243.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121831887|gb|EAX67313.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 281

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 87  WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                    Y +       +    +  N         D   RRY+V+        +D  +
Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 255

Query: 644 AQKL 647
              L
Sbjct: 256 FDDL 259


>gi|123270414|ref|XP_001289723.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121861162|gb|EAX76793.1| hypothetical protein TVAG_598800 [Trichomonas vaginalis G3]
          Length = 262

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E+V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 87  WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                    Y +       +    +  N         D   RRY+V+        +D  +
Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 255

Query: 644 AQKL 647
              L
Sbjct: 256 FDDL 259


>gi|329938729|ref|ZP_08288125.1| hypothetical protein SGM_3617 [Streptomyces griseoaurantiacus M045]
 gi|329302220|gb|EGG46112.1| hypothetical protein SGM_3617 [Streptomyces griseoaurantiacus M045]
          Length = 341

 Score = 60.3 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 36/132 (27%), Gaps = 8/132 (6%)

Query: 37  EEQLLSSEKIDKLPAC-----GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF---EIL 88
            +      +I +L A      G+G  CG+    L   D+D+K    + T         + 
Sbjct: 88  HDASTDPRRIRELFAAAPWATGYGIACGLPPHHLIGVDLDTKSGTDSTTALRELALRHLF 147

Query: 89  HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148
              P V +         +      +    +       +DI G G Y V            
Sbjct: 148 TIPPTVVVVTPSGGRHLWLTGPPDVVVPNSASRLAPGIDIRGAGGYLVGPGSRTDHGVYE 207

Query: 149 TWTTPPHRFKVE 160
           T     H     
Sbjct: 208 TAPGAAHLSPAP 219


>gi|123155124|ref|XP_001278165.1| Poxvirus D5 protein [Trichomonas vaginalis G3]
 gi|123184211|ref|XP_001281053.1| Poxvirus D5 protein [Trichomonas vaginalis G3]
 gi|123317186|ref|XP_001292577.1| Poxvirus D5 protein [Trichomonas vaginalis G3]
 gi|121824252|gb|EAX65235.1| Poxvirus D5 protein [Trichomonas vaginalis G3]
 gi|121834803|gb|EAX68123.1| Poxvirus D5 protein [Trichomonas vaginalis G3]
 gi|121868268|gb|EAX79647.1| Poxvirus D5 protein [Trichomonas vaginalis G3]
          Length = 291

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 53  WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 112

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 113 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 165

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                    Y +       +    +  N         D   RRY+V+        +D  +
Sbjct: 166 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 221

Query: 644 AQKL 647
              L
Sbjct: 222 FDDL 225


>gi|123179997|ref|XP_001280298.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121832088|gb|EAX67368.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 281

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 87  WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                    Y +       +    +  N         D   RRY+V+        +D  +
Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 255

Query: 644 AQKL 647
              L
Sbjct: 256 FDDL 259


>gi|302559769|ref|ZP_07312111.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           griseoflavus Tu4000]
 gi|302477387|gb|EFL40480.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           griseoflavus Tu4000]
          Length = 317

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 39/164 (23%), Gaps = 33/164 (20%)

Query: 15  HNGFKLIPLRLGDKRPQRLG----------------------KWEEQLLSSEKIDKLPAC 52
             G  +IPL    K P                             +      +I  L A 
Sbjct: 48  ERGLAVIPLSR-TKLPALRSPHHDDPEPAGPPCHGECGRFGHGVHDASTDPARIRALFAA 106

Query: 53  -----GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL----HGTPIVRIGQKPKIL 103
                G+G  CG+    L   D+D+K    A        +         +V +       
Sbjct: 107 APRATGYGIACGLPPHHLIGVDLDTKTGTDARAALRELALRHLFTIPATVVVLTPSGGRH 166

Query: 104 IPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
           +      + +            +DI G G Y V           
Sbjct: 167 LWLTGPPDVVVPNS-AGRLAPGIDIRGAGGYLVGPGSRTDHGAY 209


>gi|123137303|ref|XP_001277241.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121820489|gb|EAX64311.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 302

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 15/167 (8%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 87  WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
                    Y +       +    +  N         D   RRY+V+
Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 243


>gi|239930266|ref|ZP_04687219.1| hypothetical protein SghaA1_18699 [Streptomyces ghanaensis ATCC
           14672]
 gi|291438614|ref|ZP_06578004.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341509|gb|EFE68465.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 288

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 41/164 (25%), Gaps = 31/164 (18%)

Query: 15  HNGFKLIPLRLGDKRPQRLG--------------------KWEEQLLSSEKIDKLPAC-- 52
             G  +IPL    K P                           +      +I +L A   
Sbjct: 21  ERGLAVIPLSR-TKLPALRSPHRDDPDPAPCHGECGRSGHGVHDASTDPVRIRELFAAAP 79

Query: 53  ---GFGFVCGVGEQPLYAFDIDSK---DEKTANTFKDTFEILH-GTPIVRIGQKPKILIP 105
              G+G  CG+    L   D+D+K   D   A               +V +       + 
Sbjct: 80  RATGYGIACGLPPHHLIGIDLDTKGGTDPSAALRELTLRHSFTIPATVVVLTPSGGRHLW 139

Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT 149
                + +            +D+ G G Y V            T
Sbjct: 140 LSGPPDVVVPNS-AGRLAPGIDVRGAGGYLVGPGSRTDHGTYTT 182


>gi|298369852|ref|ZP_06981168.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281312|gb|EFI22801.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 812

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 94/334 (28%), Gaps = 39/334 (11%)

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYF---ESEEVMDYFTRCVGMALLGGNKAQR------FI 504
           KS G         +  + L+         +         V   L    +          +
Sbjct: 444 KSIGYLIEAFPECRNIIRLIYHLCSGNGDDGTNARAAEWVLNWLACRVRQPAEKPATALV 503

Query: 505 HIRGVGGSGKSTLMNLI-KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
            I    G GKST    I K  FG             +     A ++  +   L     + 
Sbjct: 504 FISETQGVGKSTFGEKIVKALFGEY----------TRQLDQNALESRFNSALLFALVTIF 553

Query: 564 ISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH-LFVRNPDD 621
              +  ++ +N   K+K M   D +       +       +       ++  + + + D 
Sbjct: 554 EEISPSDERLNVIGKLKNMITSDVIMVERKGRDAEKHGDFNSFIIFSNDERSIPIESND- 612

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV-KAYISKGLDVDIPEVCL 680
              RR++V+  +K  ++      Q+      +     FL  +   Y   G +        
Sbjct: 613 ---RRFMVVNCNKKFSDAQYEALQEELDNGGIRHFAEFLHALPLTYQEDGEERKFSPHTK 669

Query: 681 KAKEEERQGTDTY-----QAWIDDCCDIG---ENLWEESHSLAKSYSEYREQELNYDRKR 732
                 ++   +      +A++DD  +       +   +  L   Y  +      +    
Sbjct: 670 PLMTPIKKRMISLNKPSWEAFLDDWREGDLDVPYVTCAATDLWAVYKRWAHNTKTFH--- 726

Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
           +  +    N+ ++          + + WK  R  
Sbjct: 727 LQQKNFYANIGKR-LEEKRSDVALREGWKKVRFF 759


>gi|118462462|ref|YP_879573.1| hypothetical protein MAV_0284 [Mycobacterium avium 104]
 gi|118163749|gb|ABK64646.1| hypothetical protein MAV_0284 [Mycobacterium avium 104]
          Length = 932

 Score = 59.9 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 73/267 (27%), Gaps = 31/267 (11%)

Query: 11  KQAIHNGFKLIPLRLGDKRPQRLGKWEEQL--LSSEKIDKLPAC-GFGFVCGVGEQPLYA 67
           ++ +  G  L+PL+ G K+   L  W+        E +  L A    G   G     L A
Sbjct: 10  ERIVALGGHLMPLKPGIKK-ALLANWQLAPAITVDEALAHLAAGGNVGVHLGF--SGLIA 66

Query: 68  FDIDSKDEKTANTFKDTFEILHGTPI-VRIGQKPKI---LIPFRMNK--EGIKKKKTTES 121
            D ++               L   P   RI   PK     +  R+ K  + +       +
Sbjct: 67  LDAENLPA--TQHLLGAGFQLTVAPAKSRIEGNPKHQGSHVWLRVPKGIDPMALSSGERT 124

Query: 122 ------TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT--PLLSEEDVEYL 173
                   G +D+L  G+Y VA            W    +     D   PL   E  E  
Sbjct: 125 MQVRLPGGGLIDVLAGGRYAVAPPSQLAEAPG--WAYSAYAGSPLDLAVPLEDVEVAEAP 182

Query: 174 FKFFQEITV-PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
              F      P          +         +    E+ A       E       +WI  
Sbjct: 183 KWLFDPTLPCPEPLTALRGCLAPKA------RRDLAELDARSVALTTEIDQVPWGDWIAG 236

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGST 259
              +    +    G E+      +   
Sbjct: 237 DRRLSPTGQVDGCGCEVWHWTDAEHDK 263


>gi|123194009|ref|XP_001282960.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121841371|gb|EAX70030.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 354

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 116 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 175

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 176 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 228

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                    Y +       +    +  N         D   RRY+V+        +D  +
Sbjct: 229 DKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 284

Query: 644 AQKL 647
              L
Sbjct: 285 FDDL 288


>gi|318042163|ref|ZP_07974119.1| hypothetical protein SCB01_10655 [Synechococcus sp. CB0101]
          Length = 271

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 50/189 (26%), Gaps = 27/189 (14%)

Query: 25  LGDKRPQRLGKWEEQL-LSSEKIDKLPA-CGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82
              K P  L  W+  L  +  ++    +    G   G+   PL  FD D       +   
Sbjct: 7   PDRKGPM-LEGWQHHLGYTVAQLQAYRSMRSVGARTGLLTGPLLCFDFDG----ATSLEL 61

Query: 83  DTFEILHGTPIV-----RIGQKPKILIPFR--------------MNKEGIKKKKTTESTQ 123
               ++           R     ++ + FR                 + I   KT  S  
Sbjct: 62  GLDHLIDPGWACTWQVHRDTDANRLKVLFRPTMEQLQQLPDGAEFQGKTITAPKTDTSKG 121

Query: 124 GHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
             L++   G +  +    HP +   Y W        +   P    E    +    Q+   
Sbjct: 122 EALEVFFDGGRQVIVLGEHPSSGGHYFWPDGMGPEALAAPPAHWWEHALRIAADCQQRLT 181

Query: 183 PLVKDKKSI 191
              K     
Sbjct: 182 TGSKPSSRR 190


>gi|153853410|ref|ZP_01994819.1| hypothetical protein DORLON_00808 [Dorea longicatena DSM 13814]
 gi|149754196|gb|EDM64127.1| hypothetical protein DORLON_00808 [Dorea longicatena DSM 13814]
          Length = 750

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 22/165 (13%)

Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
               + +W+ V MA+ HE        ++   WSK    Y       KW+TF      ++ 
Sbjct: 17  AELDYQDWVNVGMALKHE----GYSVDVWDTWSKNDRRYHSGECEKKWNTF---HGSNSP 69

Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
               T   L   +G           + D  +                D ++W +  + + 
Sbjct: 70  VTAGTIVQLAMENGWKPSYTAYELGWDDEISAE----------CLVVD-RSWVEGKEIHE 118

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
                        I  +L ++ +   ++        K       W
Sbjct: 119 PRN----WDPVNEITRYLETLFDPGENVGYVTGSWEKTDDKGTRW 159


>gi|110645270|ref|YP_667909.1| helicase [Neodiprion abietis NPV]
 gi|85717846|gb|ABC74935.1| helicase [Neodiprion abietis NPV]
          Length = 1136

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 87/270 (32%), Gaps = 29/270 (10%)

Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
              N  +    +F  NT + +Q   +  K        +   I    ++   +    +   
Sbjct: 731 LTQNRIDPSRKKFKSNTIHPKQEFLKIKKFLGIYNVWKDKLILPAHNET--TLKWLIRFY 788

Query: 433 DGILDLETGQKVKPTKE-LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
              +       +  T     +  +T   ++    +  +               +F    G
Sbjct: 789 MRCVFTRIPGFMDHTTNPHMLHVATAYCYMLIANNFAYDH------------VWFLMMFG 836

Query: 492 MAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
            +L +  N  +  + + G   +GK++ + ++         +   A++ + NR     +  
Sbjct: 837 ASLNIPQNYEKLIVTLTGSSNAGKTSFVQVLGKI-----AVKMPANNFIDNRGNGPTEME 891

Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIV 609
            S        I  + E NE  +  A  IK +      +  R  +  +  +    + P I 
Sbjct: 892 FSRA------ICQLYEINEVHKTTAENIKNIADLSKEVVVRHAHS-SCQKITLQYKPLIC 944

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
            N+ L + N D A   R I+I +D     +
Sbjct: 945 NNRMLEIENFDKAVENRLIIIYYDHVFVKK 974


>gi|317501013|ref|ZP_07959221.1| hypothetical protein HMPREF1026_01164 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316897591|gb|EFV19654.1| hypothetical protein HMPREF1026_01164 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 132

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/102 (10%), Positives = 29/102 (28%), Gaps = 7/102 (6%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
              K     L         +  L+    R++  ++G  D   G+ ++   +         
Sbjct: 17  GVIKRIYNLLITQPKVHREAYELNKQPVRWINFKNGYYDPVMGEMLEHNPDYLTINQIPF 76

Query: 459 PFVEGEPS------QEFLDLVSGYFESEEVMDYFTRCVGMAL 494
           P+   +        +     ++    ++E    F    G  +
Sbjct: 77  PYYPEDCEQVLQGGENIKKYLASSLSNKEEQQTFWEYFGYCM 118


>gi|295837848|ref|ZP_06824781.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           sp. SPB74]
 gi|197699918|gb|EDY46851.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           sp. SPB74]
          Length = 344

 Score = 59.5 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 3/98 (3%)

Query: 51  ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG---TPIVRIGQKPKILIPFR 107
           A G+G  CG+    L   D+D+K               HG      +R+         + 
Sbjct: 108 ASGYGIACGLAPHHLLGLDLDTKHGADPLRALVLLGARHGFVLPVTLRVATPSGGAHLWF 167

Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145
               G   + +       +D+ G G Y V         
Sbjct: 168 SAPAGRTVRNSAGRLAPGIDVRGAGGYLVGPGSRTTRG 205


>gi|322510469|gb|ADX05784.1| putative DNA primase/polymerase [Organic Lake virophage]
          Length = 776

 Score = 59.1 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 53/313 (16%), Positives = 95/313 (30%), Gaps = 63/313 (20%)

Query: 469 FLDLVSGYFESEEVMD-YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
           +LDLV      EE    YF R +         K    +  +G  G+GK+ +++ I     
Sbjct: 434 YLDLVKELCGGEEDHAMYFHRFIAQIFQDPNRKVPICVIFKGKQGTGKNMMLDAIGNMLN 493

Query: 527 N-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGG 584
              Y+ +++ +D   +      K            +V ++E    +  +   KIK     
Sbjct: 494 KTHYITSSKPTDFFGDHAEGFCK----------KLLVNLNECEGKNTFDFEGKIKSFITE 543

Query: 585 DCMTARLNYGNTYSESPASFTPFIVP--NKHLF-VRNPDDAWWRRYIV-------IPFDK 634
           D +T        YS +  + T       N     V+  D    RRY+V       I    
Sbjct: 544 DTITVNPKNVRPYSIANMARTVITTQKPNPIPIDVKTKD----RRYVVYKTTDKYIKMSS 599

Query: 635 PIANRDASFAQKLETKYTLEAK-KWFLKGVK---AYISKGLDVDIPEVCLKAKEEERQGT 690
                       L     ++A  +WF+        +I +              E  ++  
Sbjct: 600 KFW---TQLHNHLRKPEMMQALYQWFMTFNLTDFDWIKR----------RPLTEAYKEMC 646

Query: 691 DTY----QAWIDDCCD------------IGENLWEESHSLAKSYSEYREQE--LNYDRKR 732
           + Y      + ++  D              E +      L + Y  +  +   L  D K 
Sbjct: 647 NLYSPIEALFFEEFYDNEIWLGLGVSGRKDEVVTIPMQELFEEYEGFCRRHRFLKDDTKA 706

Query: 733 ISTRTVTLNLKQK 745
            S+R     L   
Sbjct: 707 TSSRAFISKLVDL 719


>gi|255325158|ref|ZP_05366264.1| DNA primase/polymerase domain protein [Corynebacterium
           tuberculostearicum SK141]
 gi|255297723|gb|EET77034.1| DNA primase/polymerase domain protein [Corynebacterium
           tuberculostearicum SK141]
          Length = 750

 Score = 59.1 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 60/230 (26%), Gaps = 23/230 (10%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
           +        G  ++PLR G+K P                D + + G      +G   +  
Sbjct: 42  DYVHALQAEGVAVLPLRAGEKLPATPNGVHGATTDPATFDAMYSTGCNLGMNLGASGIVV 101

Query: 68  FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ---- 123
            D D+  E       +  +    +        P                +     +    
Sbjct: 102 VDADTPAEVEDWQ--EWQKEHATSMPRATVATPGTAGVHHGGGHWWIDAENAGELKESKA 159

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
           G   ++   +Y V      +T        P     V    + S      + +  + +  P
Sbjct: 160 GAATVMTGDRYVVLPGSV-RTD----VADPNQPAYVVQGAVYSSVQGSAVIEAARRVDKP 214

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
             + K +  P+ T   + ++     E    L            D+WI   
Sbjct: 215 --ETKTTREPNSTPVTSIDQWAQETEWEQLLIP----------DDWINTG 252


>gi|134296769|ref|YP_001120504.1| hypothetical protein Bcep1808_2677 [Burkholderia vietnamiensis G4]
 gi|134139926|gb|ABO55669.1| hypothetical protein Bcep1808_2677 [Burkholderia vietnamiensis G4]
          Length = 566

 Score = 59.1 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/441 (11%), Positives = 120/441 (27%), Gaps = 62/441 (14%)

Query: 352 TASIMNFLVSMKEDVFDLSE--EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
                   V  K D   L +  E + +N  S             +         S+   +
Sbjct: 76  EDGEKQKRVIKKYDYSSLKDFKEMKIDNNYSTKEVNRNTQKQEFKKKNYADFWLSSISPV 135

Query: 410 EAGSIFSITSDLLD-SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
           +      +     + ++       +G ++ + G                           
Sbjct: 136 KKKYERLVFDANPNFNNPDLFNMWNGFVEPKKGSVEP----------------------- 172

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           FLD +     ++E  ++  + +   +          I + G+ GSGK+T+   +K    +
Sbjct: 173 FLDHLHKLIGNKEYENHIIKTIAWVVRFPHKNPGVTIVLMGLQGSGKTTISMTLKAICPD 232

Query: 528 QYVINAEAS-DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
              + ++ + D++     +          L     +    +   D+  A+K+K +   + 
Sbjct: 233 HSKVVSDLARDLLGEFNGD---------YLHVKFFLHEESSFAGDKKTASKLKDIITSEY 283

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
              RL + N        F  F   +++       D   RR+ +      +      F + 
Sbjct: 284 RNNRLKFLNGIEIKNIGFHIFTSNSENPINVENSD---RRHNIFKCSSQLIGNRKHFDEY 340

Query: 647 LETKYTLEAKKWFLKGVKAYIS----KGLDVDIPEVCLKAKEEERQGTDT-YQAWIDDCC 701
                      + +   +  +         +   +   + K+   +  D     +++  C
Sbjct: 341 YSWLNGDGK-HYLVDYFQNIVDLSGFDVRKIIDTDAHSEVKQNNFEPLDKFLYDYLNGEC 399

Query: 702 D---------------IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           +               I + +        + Y E+            S    T  L  K 
Sbjct: 400 EFYDVEEGDELSSQKWIHDEIEVSRQDFYQKYVEFCRLHAPKALLDSSQTKFTTAL-AKI 458

Query: 747 FIGGIKREKIEKEWKSKRIIK 767
           F    K +   K        K
Sbjct: 459 FHFPEKYKDNWKRRNRPPFFK 479


>gi|123341474|ref|XP_001294617.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121872749|gb|EAX81687.1| hypothetical protein TVAG_101730 [Trichomonas vaginalis G3]
          Length = 210

 Score = 59.1 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 15/166 (9%)

Query: 470 LDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF 525
           LD V       +E+V +Y        L     K +  + I G  G+GK+T   +++    
Sbjct: 1   LDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLL 60

Query: 526 -GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G          +I           N S+  +       +   +    +N+  +K +   
Sbjct: 61  EGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITD 113

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
                   Y +       +    +  N         D   RRY+V+
Sbjct: 114 KVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 156


>gi|134103453|ref|YP_001109114.1| hypothetical protein SACE_7028 [Saccharopolyspora erythraea
           prophage pSE211]
 gi|291006005|ref|ZP_06563978.1| hypothetical protein SeryN2_15905 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916076|emb|CAM06189.1| hypothetical protein SACE_7028 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 337

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 38/175 (21%), Gaps = 47/175 (26%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRL----------------------GKWEEQLLSSEKID 47
           A   I +G  + PLR   KRP                           +        +  
Sbjct: 8   AHWLIEHGMYVFPLRPYSKRPFGNCRRCKDNRCTQPCPCLTADRPCHGYLAATNQHRRAR 67

Query: 48  KL----PACGFGFVCGVGEQPLYAFDID----------------SKDEKTANTFKDTFE- 86
           +     PA   G             D+D                  D   A     T E 
Sbjct: 68  RWFTRMPAANVGIST--DLSDTVVLDLDRKPKAPAAAAHDVPILVADGLGALDAITTHEG 125

Query: 87  -ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI 140
                T  +    + +  + FR                  +DI   G Y VA   
Sbjct: 126 ADWPDTLTIATPSEGR-HLYFRRPAGLEVASDANGRVGHQIDIRAQGGYVVAPGC 179


>gi|123381289|ref|XP_001298554.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121879154|gb|EAX85624.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T E            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|78485013|ref|YP_390938.1| hypothetical protein Tcr_0668 [Thiomicrospira crunogena XCL-2]
 gi|78363299|gb|ABB41264.1| Primase [Thiomicrospira crunogena XCL-2]
          Length = 833

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 93/298 (31%), Gaps = 29/298 (9%)

Query: 480 EEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
           ++V  +    +   +   G K    +   G  G+GK+         FG  + +  + +  
Sbjct: 507 DDVFKWVLSWLAYPIQNPGAKLDTALIFHGPQGTGKNLFFEAYGEIFGEHFSVITQDTME 566

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
            Q       +    L         I++        N  K+K M  GD +         Y 
Sbjct: 567 DQFNSDWVDRKLFVLAD------EIVAVQERTHVKN--KLKTMITGDRIRINQKMIAAYP 618

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
           E       F+    +  V    D   RRY+VI   + +     +  ++   K   +A   
Sbjct: 619 EKNFFNMVFLSNEANPVVLEKRD---RRYLVIWTPEAMPEGFYNLVRQEIDKGASKALH- 674

Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEE---RQGTDTYQAWIDDCCDIGENLW---EESH 712
               +  +              +AK++       T     ++ +      ++      + 
Sbjct: 675 --NYLLNFDIGEFKPWSKPPMTRAKQDLILLNAETPYV--FLHEWMTGNLDMPFCPAPAG 730

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE----KIEKEWKSKRII 766
            + K Y ++ ++     +   ++R    +++ +G     +      K +++ K  +  
Sbjct: 731 LVYKVYHKWCQENGE--KWPRTSRQFLSSIRSEGIRSEKENHFSDYKNKQDNKRTQFY 786


>gi|212712327|ref|ZP_03320455.1| hypothetical protein PROVALCAL_03415 [Providencia alcalifaciens DSM
           30120]
 gi|212685073|gb|EEB44601.1| hypothetical protein PROVALCAL_03415 [Providencia alcalifaciens DSM
           30120]
          Length = 752

 Score = 58.7 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 90/613 (14%), Positives = 175/613 (28%), Gaps = 81/613 (13%)

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228
               L        +           S+    +N   +T  +I + L          ++  
Sbjct: 198 LASELVLHSNAADISDFDVVSDDDLSRLVDLDNINSHTFDDIRSALWHPQVLRLAENYPT 257

Query: 229 WIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
           W+ +   +A    T    K K +   WS +    DEE    KW              R+ 
Sbjct: 258 WVDMGNRLAWFKNTDYEDKAKSLWVEWSAKAEKGDEEAAINKWSQLCA--------DRTG 309

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
           + ++F    K         R   A   A    +         +        ++       
Sbjct: 310 YQAIFTLAQKEGWVNPGTERLKTAVATA--DDF--DDIRVANEPMPLPSFKRDKYGQIEA 365

Query: 347 TLDKITASIMNF-LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN--VEENSKAK 403
           T+D +  ++M    + ++       +E       +   + + + DY R    +E+     
Sbjct: 366 TIDNVAKAVMRPDFIDIEIRFDTFRDEIMFAPTGTNEWQQFSDADYSRLRIAMEKRDFKP 425

Query: 404 STAQSLEAGSIFSITSDLLDSS-SRFLGEQ-DGILDLETGQKVKPTKELYITKSTGTPFV 461
              + +    + +   +  DS+       + DGI  +E         E        TP+ 
Sbjct: 426 VGRELIRDVVLLAAEENQFDSAIEWLTNLEWDGIKRVEQFYHTHFGAED-------TPYT 478

Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
                  +                     G  ++ G KA     + G  G GKS+ +   
Sbjct: 479 RAVSLYMWT-----------------AMAGRVMVPGIKADMVPILVGAQGCGKSSGV--- 518

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQ 580
                    ++ + +   +    E       L R + G  +  I E       +   IK 
Sbjct: 519 -------AALSPDPTFFTEISFAEKDD---DLARKMRGRLVAEIGELRGLSTKDLESIKA 568

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
                       +    ++ P         N+  F+ +      RR++ +   K   +  
Sbjct: 569 FVTRTHENWIPKFKEFATQFPRRSLIIGTTNEDEFLADRTG--NRRWLPVEVIKVNVDDI 626

Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGL--DVDIPEVCLKAKEEERQGTDTYQAWID 698
                +L  +     K     G++   ++ L   V        A  E        + W+D
Sbjct: 627 TRDVLQLWAEAREMFKA---DGIQYEAAEHLAAQVHEKYTIKDAWLE------IIERWLD 677

Query: 699 D-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT---VTLNLKQKGFIGGIKRE 754
           +     GE     S       +E   + LN D K IS R    +   L+  G+    K  
Sbjct: 678 EPDLMTGEKPRTRS---FLRAAEVLREALNLDPKNISRREQMRIGNVLQNCGY----KSV 730

Query: 755 KIEKEWKSKRIIK 767
           +   E K  R+ +
Sbjct: 731 QRRVEGKVTRVYE 743


>gi|123447869|ref|XP_001312670.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121894525|gb|EAX99740.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 58.7 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKNL 196


>gi|78212470|ref|YP_381249.1| hypothetical protein Syncc9605_0932 [Synechococcus sp. CC9605]
 gi|78196929|gb|ABB34694.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 226

 Score = 58.7 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 48/185 (25%), Gaps = 33/185 (17%)

Query: 26  GDKRPQRLGKWEEQL--LSSEKIDKLPAC-GFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82
            D +   +  W +       E +++ P     G +     QPL  FD D +         
Sbjct: 33  KDGKAPYISGWSKHPEFTVQELLEQFPQTKSVGVIT----QPLLCFDFDGETATQHAVLN 88

Query: 83  DTFEILHGTPIV-RIGQKPKILIPFRMNKE------------GIKKKKTTESTQGHLD-- 127
           D       T  + R     +  + F  +K+              K +  +   +   +  
Sbjct: 89  DRDPDYVNTWRINRTTDPNRYKLLFLPSKKQLAQLPNGQITHSFKTRPPSSVRRPPYEKG 148

Query: 128 -----------ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
                          G+  +    HP +   Y W        +   P      V  L + 
Sbjct: 149 AVVAKGEAEEVFCHPGRQVIVAGEHPSSGGHYFWPVGFGPEALCAPPEEWWSHVLELSRD 208

Query: 177 FQEIT 181
           +    
Sbjct: 209 YPRPA 213


>gi|123182765|ref|XP_001280745.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121833665|gb|EAX67815.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKNL 196


>gi|9964401|ref|NP_064869.1| putative NTPase [Amsacta moorei entomopoxvirus 'L']
 gi|9944610|gb|AAG02793.1|AF250284_87 AMV087 [Amsacta moorei entomopoxvirus 'L']
          Length = 726

 Score = 58.4 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 96/380 (25%), Gaps = 47/380 (12%)

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327
           K    +     +   K +    + +  G       L   +       + +  +  + +  
Sbjct: 304 KICGKNSLHKNNRIIKFTEQKIILFKSGNPRNCNTLKYDYPTLSGYELANFIRDLNIIKK 363

Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387
            D+ A+         I                  +   + +               + +F
Sbjct: 364 IDSDAYVYWKNGKWAIVDNPY---------IFQGISNMILEKYRNNMLIQDIDYIIKKFF 414

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447
                R +                    S+ +D++  +   +   +G+ DL+  +     
Sbjct: 415 GEAKNRISAN-----------------LSMNTDIICFNPYIIQFNNGVYDLKESKFYTGE 457

Query: 448 --KELYITKSTGTPFVEGEPS------------QEFLDLVSGYFESEEVMDYFTRCVGMA 493
             K+          + + E                 L L +                  +
Sbjct: 458 NAKKYIRLNYIKIDYKDIEDMSDEEKIKFENNYNILLKLFNLVIPKSNPKRIVFETNLSS 517

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           +L          + G    GKST+  L++    + ++                   N  L
Sbjct: 518 VLHYCHKSVITILYGPTSGGKSTIKYLLRQLLFDMFLEPPIEFY---QNYIPKNSPNSWL 574

Query: 554 IRLMGSRIVIIS--ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
            ++    +   S  + N N+      IKQ T    +  R    +       + T FI  N
Sbjct: 575 GKVEDKLVSFASEGDVNRNEVFLNKNIKQYTEQ-YILGRDLNKSKCVH-KNTLTQFIDLN 632

Query: 612 KHLFVRNPDDAWWRRYIVIP 631
                 + D A  +R  VI 
Sbjct: 633 PKPMFSSVDPALVKRIAVIE 652


>gi|291621990|emb|CAX65023.1| gp42 protein [Vibrio phage VP58.5]
          Length = 1117

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
               C      +  +D W  V  A+H E      G  +   WS  GS Y E+    +W +
Sbjct: 32  EVQECLSFISPDQDYDTWARVGRALHSEFGKD--GFTLFDNWSSGGSNYKEKAVREQWKS 89

Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
           F           R T  ++ Y   +     +  +   
Sbjct: 90  F-------RTTDRVTIGTVIYLAKEGGWSPVRDASQD 119


>gi|16579845|gb|AAL26660.1| unknown [Staphylococcus aureus]
          Length = 172

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 3/112 (2%)

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPI 636
           +K++   + +      G T  E+          N  L   +    A  RR  VIP +  +
Sbjct: 19  LKKLVSVEPVHVDRK-GKTQVETTLDLKLAFGTNARLNFPSAHAKALERRIAVIPCEYYV 77

Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
              D    +KL+     E   + +   K  +   ++    +   +   +   
Sbjct: 78  EKADPDLIEKLQ-DEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDWLN 128


>gi|163851880|ref|YP_001639923.1| hypothetical protein Mext_2457 [Methylobacterium extorquens PA1]
 gi|163663485|gb|ABY30852.1| hypothetical protein Mext_2457 [Methylobacterium extorquens PA1]
          Length = 820

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 24/212 (11%)

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKST 516
            P    + ++  L      F      ++    +   L   G K    + + G  G+GK+T
Sbjct: 452 IPAESTDGAEPILRHFDYLFPKAAEREHILDYLAHMLRHPGVKIAHGLMVTGPQGTGKTT 511

Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA- 575
           +  +++   G++             +      A+    RL+  + ++I E          
Sbjct: 512 IGIIVRGLIGDRNA----------RKVEGDELADKWTSRLVNVQALVIEEAAHGQRYEIY 561

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK-HLFVRNPDDAWWRRYIVIPFDK 634
            + K++  G+  T +      Y+         +  ++  + V   D    RR+ V    +
Sbjct: 562 ERFKELFTGETFTVQDKQVPLYNGRCPRGVLLLTNHEAAITVTGND----RRFHVSETTE 617

Query: 635 PIANRDASFAQKLETK-----YTLEAKKWFLK 661
             A     +   L               W ++
Sbjct: 618 VPA--PPEYFAALYAALDDGVTLPAFAAWLMQ 647


>gi|123231964|ref|XP_001286348.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121851706|gb|EAX73418.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 59/203 (29%), Gaps = 19/203 (9%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHS--LAKSYSEYR 722
                +   IP    + ++   +   +    +ID+      N +E      L   Y +Y 
Sbjct: 125 DISNFNPRQIPHT--EERQTLLEANKSVYELFIDE------NDFECLDERSLYDEYKQYC 176

Query: 723 EQELNYDRKRISTRTVTLNLKQK 745
           ++   Y     S RT   N+K  
Sbjct: 177 QE---YGYMAASKRTFLANVKNL 196


>gi|211731819|gb|ACJ10131.1| predicted P-loop ATPase [Bacteriophage APSE-6]
          Length = 661

 Score = 58.4 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 71/535 (13%), Positives = 138/535 (25%), Gaps = 91/535 (17%)

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243
                   ++     N    T  ++ + L          ++  WI +   +A   +TR  
Sbjct: 121 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWIDMGNRLARFKDTRFE 180

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
            + K +   WS   +  D E    KW              R+ + ++F    K       
Sbjct: 181 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 232

Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
           A R   A      F            +   W               DK +  I   + + 
Sbjct: 233 AERLKTAVATVDEFDDLTDPT-----ENSKWPTFK----------RDKTSGQIEATIDNA 277

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
            + V        +   ++      F     ++         S  +       F      L
Sbjct: 278 AKAVMCADFVGVEIRFDALRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGREL 337

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE- 481
                 L             +      +   KS      E +           +  +E+ 
Sbjct: 338 IRDVVLLAA----------DENPFDSAMEWLKSL-----EWDGIPRIETFYHIHLGTEDT 382

Query: 482 -----VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
                V  Y    + G  L  G KA     + G  G GKS+ +            ++ + 
Sbjct: 383 AYTRAVSRYMWTALAGRVLKPGIKADMVPILVGAQGCGKSSGV----------AALSPDP 432

Query: 536 SDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
           +   +    E       L R + G  +  ISE    +      IK             + 
Sbjct: 433 TFFTEISFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFK 489

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
              ++ P         N+  F+ +      RR++ +     +   D    +K        
Sbjct: 490 EFATQFPRRSLSIGTTNEDEFLGDKTG--NRRWLPVE----VGKMDVEGIKKDV------ 537

Query: 655 AKKWFLKGVKAYISKGLDVDIPEV----------CLKAKEEERQGTDTYQAWIDD 699
            + W  +  + +   G+  +  E              A +E        + W+D+
Sbjct: 538 IQLWA-EAREVFNKTGIQFEEAEQLANQIHEKYFIKDAWQE------IIERWLDE 585


>gi|170744754|ref|YP_001773409.1| hypothetical protein M446_6725 [Methylobacterium sp. 4-46]
 gi|168199028|gb|ACA20975.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 759

 Score = 58.0 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 56/231 (24%), Gaps = 16/231 (6%)

Query: 4   MQWK---EQAKQAIHNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFV 57
           + WK   +Q        +   P+               W +   +  +       G GFV
Sbjct: 35  VVWKYIWDQKPNKTEGKWDKPPINARTGGNASSSDPETWSDYRTAENRALSGGYDGVGFV 94

Query: 58  CGVGEQPLYAFDID-SKDEKTANTFK-DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
               +  +   D+D  +D +T          I  G     I    K L  F         
Sbjct: 95  L-PPDGSISGIDLDKCRDPETGKIAAWAQVAIDFGETYCEISPSGKGLRFFVK-----GA 148

Query: 116 KKTTESTQGHLDILGC-GQYFVAYNIH-PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
            +  +    H++I    G+Y      H P T  E         +  E    +     E L
Sbjct: 149 VEGRKVDAAHVEIYSEGGRYLTVTGQHLPGTPAEIREAPRTIAYLQERADEIKAAQREAL 208

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
            +  Q       K              NN        T           N 
Sbjct: 209 DRARQLTEKKAGKATDKARDGNRRATGNNPFLDYAAATRKRGSAFFRTINE 259


>gi|261326266|emb|CBH09092.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
          Length = 1249

 Score = 58.0 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 179  EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238
            +   P+  D    + S+  T +   ++   +                +D W+ V +A+H+
Sbjct: 1131 QNAKPVEYDAYGNVVSRYLTESA--KWHRFKTAVEKLHRLPPRAAECYDIWVRVGLALHN 1188

Query: 239  ETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297
             +       E   R+S +    Y  E    KW  FD     D    R  F  L     + 
Sbjct: 1189 FSNEDHV-FEEWVRFSLKCPQKYSRETCRRKWQQFDRNP--DALNWRRGFNYLNSTVWRS 1245

Query: 298  IP 299
            +P
Sbjct: 1246 VP 1247


>gi|115504605|ref|XP_001219095.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|83642577|emb|CAJ16608.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 1249

 Score = 58.0 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 179  EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238
            +   P+  D    + S+  T +   ++   +                +D W+ V +A+H+
Sbjct: 1131 QNAKPVEYDAYGNVVSRYLTESA--KWHRFKTAVEKLHRLPPRAAECYDIWVRVGLALHN 1188

Query: 239  ETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297
             +       E   R+S +    Y  E    KW  FD     D    R  F  L     + 
Sbjct: 1189 FSNEDHV-FEEWVRFSLKCPQKYSRETCRRKWQQFDRNP--DALNWRRGFNYLNSTVWRS 1245

Query: 298  IP 299
            +P
Sbjct: 1246 VP 1247


>gi|123188240|ref|XP_001281798.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121837379|gb|EAX68868.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 58.0 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKILNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T E            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|222530720|ref|YP_002574609.1| hypothetical protein Athe_2776 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222457567|gb|ACM61828.1| hypothetical protein Athe_2776 [Caldicellulosiruptor bescii DSM
           6725]
          Length = 718

 Score = 57.6 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 15/180 (8%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL-PACGFGFVCGVGEQPL 65
           ++  +     G +L  L    K+P     + ++L   E ++        G   G      
Sbjct: 6   RKYLEFYKGIGLRLTALN--GKKPFLADWYYKELSDEELLEYWAQGYNIGGKMGEKS--C 61

Query: 66  YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK---KKKTTEST 122
           +  DID      AN   D +  +      R  +    L+ F  N + +K   K       
Sbjct: 62  WMVDIDIDHP-AANKIVDLYLPIDTLKFGRATKPLSHLLYFSENCKSLKRDFKFSNQTEK 120

Query: 123 QGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
              ++I   GQ  +     HP TK+E  +       ++++   +  + +          T
Sbjct: 121 TTIVEIRSTGQQTMIPPSIHPDTKEELRFVG-----ELKEPLKIEADLLTAAVNKIAAAT 175


>gi|310286604|ref|YP_003937862.1| phage primase [Bifidobacterium bifidum S17]
 gi|309250540|gb|ADO52288.1| putative phage primase [Bifidobacterium bifidum S17]
          Length = 795

 Score = 57.6 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/368 (12%), Positives = 112/368 (30%), Gaps = 56/368 (15%)

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTL----DKITASIMN--FLVSMKEDVFDLSEEPED 375
           GH  Y    +  +++D +                  SI +   + +   D          
Sbjct: 80  GHLRYCPSQRRLWRRDPDVEDHAGDRRLLNSWHPIKSIEDEYHIGNSANDRNRNYSMSAT 139

Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
             + +K  +++   +   +              ++    +         + R +  +   
Sbjct: 140 IMREAKRAQWFRQVERGVR--------------IDPCVWYR-------QNGRVICVRG-- 176

Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
            D +         +    ++      +     ++L       + +   +         L 
Sbjct: 177 -DTDMAVTQTFDPKGMSNQAI----EQAVSICKWL-----TVDDKSCANLLRMFATPWL- 225

Query: 496 GGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQ--YVINAEASDIMQNRPPEAGKANPS 552
                Q    + G GG GK+ L +N ++   G++  Y   + A    +     +   N +
Sbjct: 226 -EPFKQLSFVLSGHGGDGKTLLMVNAVQSVLGDRKSYPAFSAARYCEKGFGLASESMNDA 284

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           +    G   V   E+    E     ++ ++ G  + AR+  G  Y     + T  I+ N 
Sbjct: 285 MA---GMAFVYDDESAGVTEAMLPALRSLSTGATVNARVVGGK-YYSMTPTATIVILTN- 339

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
             F  + + +  RR++ +   +      D   A +L  +    A        + +  +G 
Sbjct: 340 MPFADSSEPSDKRRFVKVEMHRSDGRSFDEYHAIELFIREHPAALYAA--SCRLW-EQG- 395

Query: 672 DVDIPEVC 679
             D PE+ 
Sbjct: 396 --DEPELV 401



 Score = 46.4 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/261 (7%), Positives = 51/261 (19%), Gaps = 21/261 (8%)

Query: 35  KWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK-------DTFEI 87
            W++  L                  V        D+D       + +             
Sbjct: 532 NWKKLALDPNVDTSQVPANVEAYAVVPAPGFMVIDMDMSKASGDDGWTVLNRQVGRYGTP 591

Query: 88  LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH-------LDIL-GCGQYFVAYN 139
                 +       +   +R+ +    + K     +         +D+      Y +   
Sbjct: 592 AFPATYLVRTPSGGLHAYYRLPEALHGRVKNAVHLKTGEYPDGIPVDLRVERKGYVIGAG 651

Query: 140 IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199
                  +Y     P    + +        +E +               +  +P+     
Sbjct: 652 STVNEG-DYRVCDLPGDDGIPEASAQICRWLESIGSIENTTPGLSASAPRRQLPAAGGIT 710

Query: 200 NNNRQYTNREITAFLSCFGEEFYN---GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ 256
             +      +        G                   A           ++I     ++
Sbjct: 711 GLDIDRVMADEPPVRRRSGRPDMTPVPEGQRNQTLHDWAYGRAVNHPENLRQIEADLYER 770

Query: 257 G--STYDEENFNYKWDTFDFE 275
           G  S   +      W +   +
Sbjct: 771 GHASGLKDNELATIWKSITRQ 791


>gi|123153529|ref|XP_001277835.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121822810|gb|EAX64905.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 57.6 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|256833376|ref|YP_003162103.1| hypothetical protein Jden_2163 [Jonesia denitrificans DSM 20603]
 gi|256686907|gb|ACV09800.1| conserved hypothetical protein [Jonesia denitrificans DSM 20603]
          Length = 189

 Score = 57.6 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 16/127 (12%)

Query: 22  PLRLGDKRPQRLGKWEEQLLSSEKIDK-------LPACGFGFVCGVGEQPLYAFDIDSK- 73
            +R   KRP     W   +                   G GFV G     +   D+D   
Sbjct: 50  WVRRQGKRPLTAKGWFASVTDPRTWATHDEVKASTKGDGIGFVLG---DGVGCIDLDHCI 106

Query: 74  -DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132
            + +     +D  +       V + Q    L  F + +EG  +    +     ++    G
Sbjct: 107 VNGELQGWARDILDR-CPPTFVEVSQSGTGLHIFGLLREGKGRG---QRGGDGVEFYSTG 162

Query: 133 QYFVAYN 139
           +Y     
Sbjct: 163 RYIAVTG 169


>gi|123239780|ref|XP_001287681.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121855539|gb|EAX74751.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKNL 196


>gi|123222767|ref|XP_001285517.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121849261|gb|EAX72587.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196


>gi|55376509|ref|YP_134361.1| conjugation protein [Haloarcula marismortui ATCC 43049]
 gi|55229234|gb|AAV44655.1| bacterial conjugation protein [Haloarcula marismortui ATCC 43049]
          Length = 1456

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 31/205 (15%)

Query: 585  DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644
            +   +R  +   +        PF+           DD++     VI        ++    
Sbjct: 1271 ESYESREAFEADWV---PVKRPFVPSTDLPVPEYTDDSYA--IGVIE-----DEQNLELY 1320

Query: 645  QKLETKYTLEAKKWFLKGVKAYISK------GLDVDIPEVCLKAKEEERQGTDTYQ--AW 696
             +             L G+   I        G++ D P      K+E     D +   A+
Sbjct: 1321 TRDSDATKD------LAGLIEAIENNELHLAGVEPDEPADKQSMKQE-DHENDPFGIQAF 1373

Query: 697  IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
            + D      +       +  +Y +Y   E  Y+ K       T  L+        +R+K 
Sbjct: 1374 VRDSIVKSGDGVVAVAEVYDAYEQYATAE-EYEVKP--KNRFTRTLRDH---VAFERDKK 1427

Query: 757  EKEWKSKRIIKGLKLKPAFESVDDN 781
              + +++R   G++L  A +  + N
Sbjct: 1428 WLDGQTRRCYVGIELDDAGDQEEPN 1452


>gi|313158932|gb|EFR58311.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 406

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 86/273 (31%), Gaps = 32/273 (11%)

Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE---QDGILDLETGQKVKPTKELYIT 453
           +   +  S+ +S+E    +++ +   D    +L      DG   +      +   + ++ 
Sbjct: 21  KRVRQPLSSGRSVETLIPWNVETLRQDYGKSYLACIPKYDGFCTVPDHTNYRREIDGFLN 80

Query: 454 KSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVG 510
           +    PF   +       D  +  F  + E+  DY        L    +    + +    
Sbjct: 81  RYEPIPFQPADGIFPHIHDFFAHIFGEQVELGYDYLQLLY---LRPLQRLPVLLLVSDER 137

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
            +GK+T +NL+K  FG     N       Q                MG  ++ + E   N
Sbjct: 138 NTGKTTFLNLLKSIFGGNVTFNTNEDFRSQFND-----------DWMGKLLICVDEVLLN 186

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN---KHLFVRNPDDAWW-RR 626
              ++ +IK ++      A     +   E        +  N     + +   +  +W RR
Sbjct: 187 RREDSERIKNLSTARSYKAEAKGRDR-REVEFFGKFVLCSNNERNPVLIEAAETRYWVRR 245

Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
              +P+D      D     K+          + 
Sbjct: 246 VPPLPYD------DQHLLAKM-RAEIPGLLFYL 271


>gi|123338166|ref|XP_001294389.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121872288|gb|EAX81459.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 57.6 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 60/203 (29%), Gaps = 19/203 (9%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHS--LAKSYSEYR 722
                +   IP    + ++   +   +    +ID+      N +E      L  SY +Y 
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE------NDFECLDERSLYDSYKQYC 176

Query: 723 EQELNYDRKRISTRTVTLNLKQK 745
           ++   Y     S RT   N+K  
Sbjct: 177 QE---YGYMTASKRTFLANVKNL 196


>gi|123239292|ref|XP_001287577.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121855262|gb|EAX74647.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISNFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|292496079|gb|ADE29180.1| conserved hypothetical protein [uncultured virus]
          Length = 266

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 62/191 (32%), Gaps = 29/191 (15%)

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF-----LKGVKAYI 667
                  + A WRR+++I F    ++         E     +          L+G+    
Sbjct: 1   MPVFSQDNHAIWRRWLLIEFPFTFSDE---LPDAKEPADREQLLSRMTTDEQLEGLLLLC 57

Query: 668 S---KGLDVDIPEV------------CLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEE 710
               +    D P+               + +E+ ++  +   A+   C +    ++ +  
Sbjct: 58  QQEIERWKPDGPDGDVNEEFFADAAPVPQVREKMKKAAEPVFAFSAACLEPADKDDAFLL 117

Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
              + + Y  + ++E   D   ++       L  +     ++ ++   + + K + +G++
Sbjct: 118 KDRVRRCYQAFADEE---DVPNLTANEFGERLVNQR-DMSLQSDRKMIDGQRKYVYQGVQ 173

Query: 771 LKPAFESVDDN 781
             P    +   
Sbjct: 174 FTPRGRQLLGE 184


>gi|312878208|ref|ZP_07738135.1| Primase 1 [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795021|gb|EFR11423.1| Primase 1 [Caldicellulosiruptor lactoaceticus 6A]
          Length = 181

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 89  HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148
               + +I       + F+  ++ I       + +  +DI G G Y +          EY
Sbjct: 8   LPDTVEQITGSGGRHLLFKYPEDVI--VPCRVNIRPGIDIRGDGGYIIVEPSKHIRG-EY 64

Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185
            W    H   V       +  +E + +   E   PL 
Sbjct: 65  CWEVSSHPLDVP-IAEAPKWLIELVAEKPVETKKPLD 100


>gi|123359946|ref|XP_001295816.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121874988|gb|EAX82886.1| hypothetical protein TVAG_223110 [Trichomonas vaginalis G3]
          Length = 211

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQIVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKFESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMPASKRTFLANVKSL 196


>gi|123297526|ref|XP_001290853.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121864049|gb|EAX77923.1| hypothetical protein TVAG_583510 [Trichomonas vaginalis G3]
          Length = 211

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196


>gi|261492426|ref|ZP_05988982.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496392|ref|ZP_05992786.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307977|gb|EEY09286.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261311885|gb|EEY13032.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 187

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 36/189 (19%)

Query: 606 PFIVPNKHLF-VRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKG 662
            F+  N              RR ++  FD+  PI  RD +   K++   T    +     
Sbjct: 4   VFMTTNNTPILFTENSGGTERRRVIFKFDRIVPIEERDFNLIDKIQ-AETGGIIRLLFD- 61

Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGT---------DTYQAWIDDCCDIGE-------- 705
                        P       E++R            +    +  +  +I          
Sbjct: 62  ---------TFPEPLEAKALLEKQRVSQEALAVKMEVNHVLEFAQE-FEILPTVNGLAMG 111

Query: 706 ---NLWEESHSLAKSYSEYRE-QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
              N      ++  +Y  + +  ++    +R  TR     LK+        RE   +   
Sbjct: 112 SSLNNGTRDSAIYPAYIYFCQLNDIEPINRRTFTRAFKQALKELDKGEYQTRESNGRTVT 171

Query: 762 SKRIIKGLK 770
           +   I  L+
Sbjct: 172 NVHYIDKLR 180


>gi|148256277|ref|YP_001240862.1| hypothetical protein BBta_4941 [Bradyrhizobium sp. BTAi1]
 gi|146408450|gb|ABQ36956.1| hypothetical protein BBta_4941 [Bradyrhizobium sp. BTAi1]
          Length = 736

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW 269
            A +    E   +  +  W+ +  A+H E     +G ++  RWS +   YD      KW
Sbjct: 215 RAEVERALEVIASDDYQVWLRIGAALHDEF--GDEGFDLFDRWSAKSDKYDNREVERKW 271


>gi|123195131|ref|XP_001283229.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121842224|gb|EAX70299.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKNL 196


>gi|123319149|ref|XP_001293155.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121869632|gb|EAX80225.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKNL 196


>gi|300172882|ref|YP_003772047.1| prophage DNA replication protein [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887260|emb|CBL91228.1| prophage Lp4 protein 7, DNA replication [Leuconostoc gasicomitatum
           LMG 18811]
          Length = 272

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 18/165 (10%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PAC---GFGFVCGV 60
           E  +Q    G  +       K     G +     + +++++      A      G     
Sbjct: 5   EHVRQYQQAGAYVFMALPNQKHNGIAGGFHNSFSNGDELEQWITQYQAYRFGNIGIDL-- 62

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTP------IVRIGQKPKILIPFRMNKEGIK 114
            +  L   DID   +    +    F+  +  P       V       +   + +   G  
Sbjct: 63  SKSNLVVVDIDKHGQNGMASILAWFKSHNVNPDTLQDTYVEQTPTGGLHAFYLIPS-GQD 121

Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
           K K   +    +D+L      V          +Y   TP  + K 
Sbjct: 122 KPKHIINAIKGVDVLSNT--AVMTAPSTMNGGQYRQITPFDKIKP 164


>gi|123242313|ref|XP_001288212.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121857036|gb|EAX75282.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 210

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISNFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196


>gi|123153670|ref|XP_001277863.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123156908|ref|XP_001278545.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121823099|gb|EAX64933.1| conserved hypothetical protein [Trichomonas vaginalis G3]
 gi|121825656|gb|EAX65615.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 57.2 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123345603|ref|XP_001294919.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121873338|gb|EAX81989.1| hypothetical protein TVAG_290840 [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|288926420|ref|ZP_06420341.1| conserved hypothetical protein [Prevotella buccae D17]
 gi|288336793|gb|EFC75158.1| conserved hypothetical protein [Prevotella buccae D17]
          Length = 396

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 29/231 (12%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489
           +G   L      +P    ++           E        LVS  F  + E+ MDY    
Sbjct: 54  NGFCTLPDHVNYQPVVANFLNLYEPIDHEPKEGTFSHIEALVSHIFGEQYELGMDYLQLL 113

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
               L    K    + +     +GKST +N +K  F +    N       Q         
Sbjct: 114 Y---LKPIQKLPILLLVSEERNTGKSTFLNFLKAIFKDNVTFNTNEDFRSQFN------- 163

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN-TYSESPASFTPFI 608
                   G  I+++ E   N   ++ ++K ++            + +     + F    
Sbjct: 164 ----ADWAGKLIIVVDEVLLNRREDSERLKNLSTTHTYKVEAKGKDRSEIAFFSKFVLCS 219

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTLEAK 656
                  + +  +  +       + + I      D  F +KL  +      
Sbjct: 220 NNEYLPLIIDMGETRY-------WVRKIEKLQSDDTDFLKKL-KEEIPAFL 262


>gi|29830757|ref|NP_825391.1| hypothetical protein SAV_4214 [Streptomyces avermitilis MA-4680]
 gi|29607870|dbj|BAC71926.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 305

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 11/142 (7%)

Query: 38  EQLLSSEKIDKLPAC-----GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL---- 88
           +      +I +L A      G+G  CG+    L   D+D+K    ++       +     
Sbjct: 80  DASTDPRRIRRLFAAAPWATGYGIACGLHPHFLIGIDLDTKSGTDSSAALRELALRHLFT 139

Query: 89  HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148
               +V +       +      + +            +DI G G Y V           Y
Sbjct: 140 IPDTVVVLTPSGGRHVWLSGPPDVVVPNS-AGRLAPGIDIRGAGGYLVGPGSR-TRHGVY 197

Query: 149 TWTTPPHRFKVEDTPLLSEEDV 170
           +      R      P      +
Sbjct: 198 STAPGTARLAPAPCPTALLRLL 219


>gi|123428312|ref|XP_001307456.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121889086|gb|EAX94526.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 210

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISNFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196


>gi|123315939|ref|XP_001292239.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121867498|gb|EAX79309.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196


>gi|123155897|ref|XP_001278333.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121824857|gb|EAX65403.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDIYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123297023|ref|XP_001290822.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121863971|gb|EAX77892.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+   +  +      SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFVSLDE----RSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKNL 196


>gi|297624036|ref|YP_003705470.1| hypothetical protein Trad_1810 [Truepera radiovictrix DSM 17093]
 gi|297165216|gb|ADI14927.1| conserved hypothetical protein [Truepera radiovictrix DSM 17093]
          Length = 273

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 70/287 (24%), Gaps = 52/287 (18%)

Query: 5   QWKEQAKQAIHNGFKLIPLRLGDKRPQ---RLGKWEEQLLSSEKIDKLPACGFGFVCGVG 61
           QW    +Q      K +PL     R         W           +  + G GFV    
Sbjct: 14  QWVAWQRQIDGTRVKKVPLDPKMMRSASVVDPDTWSSF---DAACRREHSDGIGFVL-TA 69

Query: 62  EQPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
           +  +   D+D    D           +  +    V       + I  R N     K+   
Sbjct: 70  DDGIVGIDLDNCIVDGFVTTAAFKIVDHFNSYTEVSPSGTG-LHIFIRANLNRAWKRT-- 126

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
            +    ++I G  +Y                         +  PL      +   +    
Sbjct: 127 -NGSRSVEIYGDRRYLTMTG--------------------DRAPLSRLAIHDRQDELNAF 165

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH----DEWIPVVMA 235
           +             ++T    ++     R   A       + ++G       +     +A
Sbjct: 166 LAKYDRASSPPRTIARTAPQRDDEDVLQRAANARNGERFRKLWSGDTSAYGHDHNRADLA 225

Query: 236 VHH--------------ETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           + +                R S   ++     ++  STY E      
Sbjct: 226 LCNMLWYWSGDEAQVDRLFRRSGLMRDKWDS-ARGASTYGENLILKA 271


>gi|123412608|ref|XP_001304101.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121885530|gb|EAX91171.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 56.8 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y ++      +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVYENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T E                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEFYNHLFSYFMTLDISNFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    ++D+     + +  +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDEYKQYCQE---YGYMPASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKTL 179


>gi|304383202|ref|ZP_07365675.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335673|gb|EFM01930.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 396

 Score = 56.8 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 27/233 (11%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489
           DG   +      +P  + ++           E        L+   F  + E+ +DY    
Sbjct: 54  DGFCTVPNHVNYQPVVDKFLNLYEPIGHQPKEGEFPHIESLIHHIFGEQYELGIDYLQLL 113

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
               L    K    + +     +GKST +N +K  F N    N       Q         
Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFQNNVTFNTNEDFRSQFN------- 163

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                   G  ++++ E   N   ++ ++K ++           G    E        + 
Sbjct: 164 ----ADWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218

Query: 610 PNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
            N      + +  +  +W R I       + N D  F QKL          + 
Sbjct: 219 SNNELLPVIIDVGETRYWVRKI-----NRLENDDTDFLQKL-KAEIPAFLYFL 265


>gi|326778021|ref|ZP_08237286.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658354|gb|EGE43200.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 327

 Score = 56.8 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 55/219 (25%), Gaps = 32/219 (14%)

Query: 29  RPQRLGKWEEQLLSSEK----IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKT------- 77
           +P     +    L  +K    ID+ P   F    G     L   D+D+            
Sbjct: 61  KPDMCHGFHAATLDHDKAQSWIDRYPDLNFAISTGPA--GLVIVDLDTNKNGAPIPDKYA 118

Query: 78  ------------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125
                       A   +          +        + I   +   G+   K+  +    
Sbjct: 119 NIHGVTDGYDVWALALERYGARHPTDTMQVSTPNGGLHIWHSLPP-GVVVNKSEGAFGWL 177

Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185
           +DI     Y +          EY          V +  +  +  + +L     +   P  
Sbjct: 178 VDIRSTNSYIIGPTSV-TKDGEYRRLG-----DVTEPTMAPDWLLHHLEHTGHKPKPPAP 231

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
              + I           R  T +++   L+   E   + 
Sbjct: 232 PRPRIIRQRNDQDEREYRGKTVQDLAHELATAQESERHA 270


>gi|123274452|ref|XP_001289880.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121861565|gb|EAX76950.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.8 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKNL 196


>gi|299533251|ref|ZP_07046635.1| virulence-associated E family protein [Comamonas testosteroni S44]
 gi|298718781|gb|EFI59754.1| virulence-associated E family protein [Comamonas testosteroni S44]
          Length = 872

 Score = 56.8 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 59/235 (25%), Gaps = 45/235 (19%)

Query: 462 EGEPSQEFLDLVSGYFES------EEVMDYFTRCVGMALLGGN--------KAQRFIHIR 507
           E +        +              + +Y        ++G          K      + 
Sbjct: 504 EWDGKPRLDKWLIHVLGESPETLKAPMDEYLALVGRYWVMGMVWRVMEPGCKFDYMPVLE 563

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
           G GG  KSTL  L+                         GK      ++ G  +  I E 
Sbjct: 564 GKGGLRKSTLGRLL---------AGRPEWFSDTKFDLSRGKEAYE--QVRGKWLYEIQEM 612

Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
           +   + +   IK          R+ YG+   E P         N   ++R+      RR+
Sbjct: 613 SSFSKADVNDIKAFVSSMVDNYRVAYGDQAQEFPRQCVLVGSTNDKKYLRDRTG--NRRF 670

Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAKKW----FLKGVKAYISKGLDVDIPEV 678
             +P    I                   +KW      +    Y   G+     E 
Sbjct: 671 WPVPVRHKIKTE--------------WIEKWRDQLMAEAYALYQQGGVRYTPTEE 711


>gi|123212635|ref|XP_001285303.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121848541|gb|EAX72373.1| hypothetical protein TVAG_598520 [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196


>gi|123235220|ref|XP_001286724.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121852801|gb|EAX73794.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGT-DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +     Y+ +ID+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYEQFIDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|134296560|ref|YP_001120295.1| TOPRIM domain-containing protein [Burkholderia vietnamiensis G4]
 gi|134139717|gb|ABO55460.1| TOPRIM domain protein [Burkholderia vietnamiensis G4]
          Length = 797

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN 264
                I A LS        G  D W+ + MA+  E      G ++   WS+  S+Y E +
Sbjct: 5   ADEERIRAALSHVPA----GDRDTWVQMGMAIKAEL--GEAGFDLWDDWSRSASSYSEAD 58

Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297
               W +F    I   +  +      +      
Sbjct: 59  AKSVWKSFRSGGITIASLFKRAIEHGYRESAPT 91


>gi|329849611|ref|ZP_08264457.1| DNA primase/polymerase [Asticcacaulis biprosthecum C19]
 gi|328841522|gb|EGF91092.1| DNA primase/polymerase [Asticcacaulis biprosthecum C19]
          Length = 284

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 70/247 (28%), Gaps = 23/247 (9%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKR--PQRLGKWEEQLLSSEK---IDKLPACGFGFVCGV 60
           + + A      G  ++P  +  K+     +        +  +   +++          G 
Sbjct: 2   FAQVAGHYWAAGLPVVPALINTKKIVRMSVSCTSAMPPTDLQQDWLERHAGDNIALALGP 61

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
               +   +I++ D     +       +      +   +    I F+       +     
Sbjct: 62  CA-GIEVLNINTHD----VSILSILNKVLPKSPWKCFGRRGFNIAFKFAGHRPGQLLDR- 115

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
             Q  +++   G++ +           YT     +    +    + +  ++ L   FQ  
Sbjct: 116 DRQTVVEVQSSGRFLLLPPSVHPDGGIYTSRHNLYDST-KTLKPMPKNVLDKLETAFQG- 173

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG--SHDE--WIPVVMAV 236
                 D     P+K   N +       ++  F +    +F NG  S  +   +     +
Sbjct: 174 ---AGLDIAQRRPAKKAMNGDYLA---AQLKTFAAARATDFCNGRSSLADALRLTCEWWL 227

Query: 237 HHETRGS 243
           HH     
Sbjct: 228 HHTAEDD 234


>gi|123154220|ref|XP_001277976.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121823537|gb|EAX65046.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196


>gi|48843687|ref|YP_025258.1| helicase [Neodiprion lecontii NPV]
 gi|37694270|gb|AAQ99063.1| helicase [Neodiprion lecontii NPV]
          Length = 1134

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 28/201 (13%)

Query: 485  YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +F    G +L +  N  +  + + G   +GK++ + ++         +   A++ + +R 
Sbjct: 828  WFLLMFGASLNIPQNYEKLIVTLTGSSNAGKTSFVQVLGKI-----AVKMPANNFIDHRG 882

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYGNTYSESPA 602
                +   S        I  + E NE  +  A KIK +      +  R  +  +  +  +
Sbjct: 883  NGPTEMEFSRA------ICQLYEINEVHKTTAEKIKNIADLSKEVVVRHAHS-SCQKITS 935

Query: 603  SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-------------DASFAQKLET 649
             + P I  N+ L + N D A   R I++ +D     +                  + ++ 
Sbjct: 936  QYKPLICNNRMLEIENFDKAVENRLIIVYYDHVFVKKVKFDGSIYDHFIAKQYPDEPIDI 995

Query: 650  KYTLEAK-KWFLKGVKAYISK 669
              + +    + L   K   + 
Sbjct: 996  IESFKILISYILMYYKDVKTN 1016


>gi|160934140|ref|ZP_02081527.1| hypothetical protein CLOLEP_03008 [Clostridium leptum DSM 753]
 gi|156866813|gb|EDO60185.1| hypothetical protein CLOLEP_03008 [Clostridium leptum DSM 753]
          Length = 787

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 87/318 (27%), Gaps = 47/318 (14%)

Query: 5   QWKEQAKQAIHNGFKLIPLR------LGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVC 58
            ++      + +  +  P +       G  +      W     +     +    G GFV 
Sbjct: 12  VYRNWIVWRLEDKGRKKPTKVPYCVYGGPAKVNDPRTWSTFDEAVCACQEGDYNGVGFVF 71

Query: 59  GVGEQPLYAFDIDS----KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114
                P    DID       ++ +    +  EI      +        +I          
Sbjct: 72  --TNTPFIGVDIDGCLDKCSKELSQEAIEVLEIAKSYTELSQSGSGLHIIL-------EG 122

Query: 115 KKKTTESTQGHLDILGCG--QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
                    G+ ++ G G  +YF        T + Y           ++   +  +    
Sbjct: 123 SLPQGRRRNGNFEMYGEGSNRYFAI------TGELY-----------DEYIEIRNDQQAI 165

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG---SHD-E 228
                Q I +P     ++   SK+ TN  + Q   R  +A         + G    +D +
Sbjct: 166 NTIHQQYIALPCTLSMETKPLSKSVTNLTDDQIIERACSAKNGGRFSSLWAGNISEYDND 225

Query: 229 WIPVVMAVHHET-----RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
                +A+         R   +   + R+       +DE +    +     +E     + 
Sbjct: 226 HSRADLALCRILAFWCQRDFQQIDRLFRQSGLMRPKWDELHGKETYGNMTIQEAVKHCET 285

Query: 284 RSTFTSLFYHHGKLIPKG 301
             T      +  K+ P  
Sbjct: 286 VYTGGIQNMNTEKVNPNE 303


>gi|291166232|gb|EFE28278.1| helicase [Filifactor alocis ATCC 35896]
          Length = 3918

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 94/358 (26%), Gaps = 46/358 (12%)

Query: 19  KLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76
             +PL    K  +      W         +++    G GF+ G         DID   + 
Sbjct: 34  TKLPLMPNGKPAKSNEKTTWNFYEDCIAALNRNIGDGLGFMLG---DGYIGIDIDKVSDD 90

Query: 77  T--------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
                    A +    F     T       K  +         G  K         +L+I
Sbjct: 91  IFVYSMDYQARSMTADFLRGISTYAELSPSKTGLHFI------GKGKVPGERKRHKNLEI 144

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV---------EYLFKFFQE 179
              G++F       K K            + E  PL  +            +   +  + 
Sbjct: 145 YDEGRFFTVTGNVIKDKDRSH----IKPIEQELLPLYQQYMPAMGNQIEHKQASNEQAKR 200

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYT-----NREITAFLSCFGEEFYNGSHDEWIPVVM 234
            T      ++    S         +             +   +   F + S  ++  +  
Sbjct: 201 STKENHFIQRYRQSSNDVLELLFEKGYFHYTGEDLRRIYYGNYESYFNSRSEADFFMLGR 260

Query: 235 AVHHETR-------GSSKGKEIARRWSKQGSTYDEENFN-YKWDTFDFEEIGDTAKKRST 286
            +++            + G +  + + ++G+T            + +     +    +  
Sbjct: 261 LLYYTADVEQAISLMENSGLKREKWYKRRGNTDYIHYIAGKAIGSMNKFYDWEKEYSQKE 320

Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344
            +    H  K + +G    R+  +  K +   + K  F    D    Y K   N Y +
Sbjct: 321 QSEWKRHENKEVKEGNTMPRYGFSEVKQIL-DFAKEEFRENIDRYETYLKVVGNNYKY 377


>gi|123314487|ref|XP_001291835.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121866468|gb|EAX78905.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKNL 196


>gi|123202307|ref|XP_001284045.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121844755|gb|EAX71115.1| hypothetical protein TVAG_606410 [Trichomonas vaginalis G3]
          Length = 222

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 20  GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 79

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 80  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 135

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 136 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 189

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 190 ---YGYMTASKRTFLANVKSL 207


>gi|123189466|ref|XP_001282067.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123202877|ref|XP_001284192.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121838338|gb|EAX69137.1| conserved hypothetical protein [Trichomonas vaginalis G3]
 gi|121845178|gb|EAX71262.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.4 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196


>gi|123272713|ref|XP_001289813.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121861384|gb|EAX76883.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196


>gi|123351502|ref|XP_001295333.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121874076|gb|EAX82403.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 13/200 (6%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +           +    +N+  +K +           Y ++      +   
Sbjct: 9   GKFNSSIENMKLIVCNEFQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T E   +        
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-KSDSHMQDTEYFDALSEYLTPEFYNYLFSYFMTL 124

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQE 725
                +        + ++   +   +    ++D+     + +  +  SL   Y +Y ++ 
Sbjct: 125 DISKFNPRQ-ISHTEERQTLLEANKSVYELFVDE----TDFVSLDEKSLYDEYKQYCQE- 178

Query: 726 LNYDRKRISTRTVTLNLKQK 745
             Y     S RT   N+K  
Sbjct: 179 --YGYMAASKRTFLANVKSL 196


>gi|312900435|ref|ZP_07759744.1| primase 2 [Enterococcus faecalis TX0470]
 gi|311292457|gb|EFQ71013.1| primase 2 [Enterococcus faecalis TX0470]
          Length = 752

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 58/206 (28%), Gaps = 22/206 (10%)

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE 248
           +     +        +    E+  ++           + EW+ V MA+  E   +     
Sbjct: 2   RLKNKKRELKTQMENKLDLIELLEYIDPASL-----GYQEWVNVGMALKQEGYTAVD--- 53

Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
              +WS+  S Y       KW++F   +   +    +T T L   +G   P         
Sbjct: 54  -WDQWSQSDSRYHSGECFKKWESF---QGTSSPITGATITQLAKENGWTSPFKSGDGGHE 109

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
             +N  +               + W +       I      +    I+ +L ++ E    
Sbjct: 110 LDWNDTLQKDD------LVIIDRNWIE----GKEIQEPKKWEPAKEIIRYLETLFEPSET 159

Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQ 394
           ++   +         +      Y R 
Sbjct: 160 VAYNVQSWQDEDGKWKPSNKGAYDRT 185


>gi|303236520|ref|ZP_07323105.1| virulence-associated protein E [Prevotella disiens FB035-09AN]
 gi|302483268|gb|EFL46278.1| virulence-associated protein E [Prevotella disiens FB035-09AN]
          Length = 404

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/404 (13%), Positives = 115/404 (28%), Gaps = 43/404 (10%)

Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
           +     E       ++    +    Y               +     S   +T   ++S 
Sbjct: 1   MEKERTERRAKQSKNERIEQFLKEHY-AFRFNTVKSRTEFREQDSNTSFRPLTKYDINSM 59

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGT-------PFVEGEPSQEFLDLVSGYF- 477
            R +    GI            +  +  K           P  +GE   E + L +    
Sbjct: 60  RRLVDGTLGIY-TPADNIRAILESDFCNKVNPIREYLLNLPKPKGEDESEIIRLANCVVV 118

Query: 478 --ESEEVMDYFTRCVGMALLGG----NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
               +    +    V +          +    + + G  G  K+T ++L+          
Sbjct: 119 RNPDKWKHYFVKWLVAVVANAMDDLQCRNHTCLVLTGEQGKFKTTFLDLLCP-------E 171

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
             ++        P+       +   +   I I  +    ++ +  ++K +     +  R 
Sbjct: 172 ELKSYLFTGKIDPQGKDVQTLIAEYL--FINIDDQLKALNKRDENELKNLITTPRVKYRR 229

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651
            Y     E P   +     N + F+ +P  +  RR+  +PF+    + DA+    ++  Y
Sbjct: 230 PYDTYIEEYPHLASFMASVNGNDFLTDPTGS--RRF--LPFEVEHIDIDAAKEIDIDKVY 285

Query: 652 TLEAKKWFLKGVKAYISKGLDV--DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
           +   + W +     +  + +       E       E             +    G     
Sbjct: 286 SEAVELWRVDYHYWFNEEEIAELHQESEGFQVQTAEY------------EMLLKGMEKPA 333

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
            +     + SE       Y    +S R +   LK+ GF+   KR
Sbjct: 334 ATEESYMTTSEILNYLRGYTTLNLSERRMGEALKKAGFLRKSKR 377


>gi|315425757|dbj|BAJ47412.1| hypothetical protein HGMM_F29F08C21 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 139

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 43/136 (31%), Gaps = 18/136 (13%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSS--EKIDKLPACGFGFVCGVGEQPLYA 67
           A      G  +IPL  GDKRP     W+++          +   C  G         L  
Sbjct: 9   ADDYFSRGLVVIPLVRGDKRPMVSE-WQKKSREELFAVFREHSGCNIGIRL----DSLTV 63

Query: 68  FDIDSKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
            DI+    +    F +T    L     V         + F+ +        T     G+ 
Sbjct: 64  LDIEH--ARLWRLFFETEPRELASKTWVSRTGGGGYHVYFKGS-------TTPSKADGYA 114

Query: 127 DIL-GCGQYFVAYNIH 141
           ++  G  Q+ VA   H
Sbjct: 115 ELRSGEKQFVVAPPQH 130


>gi|123243573|ref|XP_001288478.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121857773|gb|EAX75548.1| hypothetical protein TVAG_338950 [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T E            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSEYLTPEFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMPASKRTFLANVKSL 196


>gi|123239278|ref|XP_001287574.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121855254|gb|EAX74644.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y ++      +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T E                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKTL 179


>gi|303245314|ref|ZP_07331598.1| hypothetical protein DesfrDRAFT_0073 [Desulfovibrio fructosovorans
           JJ]
 gi|302493163|gb|EFL53025.1| hypothetical protein DesfrDRAFT_0073 [Desulfovibrio fructosovorans
           JJ]
          Length = 235

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 8/99 (8%)

Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            PE    ++       D    ++ + CD      E +  L  ++  +  ++   D K + 
Sbjct: 141 CPECAAGSEVAYANEPDIVARFLRERCDRDLEGHETASDLYTAFLAFCVEQGIDDEKALL 200

Query: 735 T-RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
             R  +L L++  +I        + +       KG++L+
Sbjct: 201 NIRVFSLRLQELPWI-------TKIQAFGAFHYKGVRLR 232


>gi|268319301|ref|YP_003292957.1| hypothetical protein FI9785_817 [Lactobacillus johnsonii FI9785]
 gi|262397676|emb|CAX66690.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 266

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 58/209 (27%), Gaps = 35/209 (16%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKI----DKLPACGFGFVCGVGEQP 64
            A      GF +IP+    K+P       +  L+ ++I     K P              
Sbjct: 8   YAVSYAEKGFSVIPI-GQSKKPLIKFA-GKPPLTPDEIREIWKKYPLANIALKT----DK 61

Query: 65  LYAFD-------IDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
            +  D       +D  +        + FE           +       F   K    K  
Sbjct: 62  FFVIDVDRHGGEVDGMESIKKLNHDEWFED------TLTERTAHNGFHFFFTKPKDMKIS 115

Query: 118 TTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL--SEEDVEYLF 174
                   +D+      Y V         K+Y W        + + P+    +  ++ + 
Sbjct: 116 QNIGILPSVDLKAHENNYVVVAPSSLG-DKKYQW--------LNNAPMKAPPQGLLDLIK 166

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
              +++   LV +    +  +T T +   
Sbjct: 167 DKQKDMPPTLVAEVLQGMRRRTKTTDLFE 195


>gi|123242589|ref|XP_001288281.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121857219|gb|EAX75351.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.0 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196


>gi|291531537|emb|CBK97122.1| RecA-family ATPase [Eubacterium siraeum 70/3]
          Length = 739

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 17/159 (10%)

Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
           + S+ EW+ V MA+  E         +   WS   + Y +     KW++F+         
Sbjct: 19  DLSYQEWVNVGMALKEE----GYSVTVWDNWSANDNRYHKGECEKKWESFNGSSS----- 69

Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342
              T  ++                    ++  +   +   H +     K W +       
Sbjct: 70  -PVTGATIVQMAKDRGMMFGTGEERELDWDDEISYEHHDEHVVV---NKNWIE----GKE 121

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
           I + T  +    I+ +L ++ E   ++    +   K+ K
Sbjct: 122 INAPTDWQPHREIIRYLEALFEQSENVGYVVQSYEKDGK 160


>gi|167749501|ref|ZP_02421628.1| hypothetical protein EUBSIR_00457 [Eubacterium siraeum DSM 15702]
 gi|167657529|gb|EDS01659.1| hypothetical protein EUBSIR_00457 [Eubacterium siraeum DSM 15702]
          Length = 739

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 17/159 (10%)

Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
           + S+ EW+ V MA+  E         +   WS   + Y +     KW++F+         
Sbjct: 19  DLSYQEWVNVGMALKEE----GYSVTVWDNWSANDNRYHKGECEKKWESFNGSSS----- 69

Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342
              T  ++                    ++  +   +   H +     K W +       
Sbjct: 70  -PVTGATIVQMAKDRGMMFGTGEDRELDWDDEISYEHHDEHVVV---NKNWIE----GKE 121

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
           I + T  +    I+ +L ++ E   ++    +   K+ K
Sbjct: 122 INAPTDWQPHREIIRYLEALFEQSENVGYVVQSYEKDGK 160


>gi|20090414|ref|NP_616489.1| hypothetical protein MA1556 [Methanosarcina acetivorans C2A]
 gi|19915425|gb|AAM04969.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 729

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 58/239 (24%), Gaps = 35/239 (14%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPA--CGFGFVCGVG 61
           WK + ++   N    +P R   +  R      W        +I + P    G GFV    
Sbjct: 27  WKYEPRKDNPNKPAKVPYRTRTQKARVSNPVTWSNLDYVIRQITRYPEKFDGIGFVFSEN 86

Query: 62  EQPLYAFDIDSK----DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
              L   D D        +      +    L+    +        +I             
Sbjct: 87  T-GLVGVDFDHIRVNETGEIDPVALEEIRALNSYTEISPSGTGVHVIC-------KGVMP 138

Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
                Q + ++     +                       K+ DTP    E  E +  ++
Sbjct: 139 AAGRRQDNREMYSDSHFLTFTG-----------------DKLPDTPTTINEAQEAINTYY 181

Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS--HDEWIPVVM 234
           ++       DK     +K    +             L       Y+      +   + M
Sbjct: 182 EKWFSKSTDDKTLSNEAKKVVKSLKASKKLGAKFKRLFDGDISDYDNDQSRADIALMGM 240


>gi|255067391|ref|ZP_05319246.1| inner membrane protein [Neisseria sicca ATCC 29256]
 gi|255048361|gb|EET43825.1| inner membrane protein [Neisseria sicca ATCC 29256]
          Length = 1008

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 14/108 (12%)

Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
            EI A LS  G +      D WI +  AV  E      G  +   WS+    Y+  +   
Sbjct: 10  DEIRAALSHIGAD----DRDMWIRMGAAVKDE--MGEDGFHLWDEWSQTSGNYNARDAKA 63

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
            W +F             +  +LFYH  +   +            KA 
Sbjct: 64  AWKSF--------KPGHISIATLFYHARQNGWRPEKPYVPLSDAEKAR 103


>gi|255011106|ref|ZP_05283232.1| hypothetical protein Bfra3_18337 [Bacteroides fragilis 3_1_12]
 gi|313148914|ref|ZP_07811107.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137681|gb|EFR55041.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 719

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 94/298 (31%), Gaps = 51/298 (17%)

Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS---------------------S 425
            N  +RR  V +  +    +++ E  S +++ +  L+S                      
Sbjct: 330 RNYAFRRNTVLDRLEMCDLSKTKEVKSFYAMRNKDLNSIFLNISRQGIAYPLNSLKSVID 389

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY 485
           S +  E +   D   G         +I K   T   E +               E    +
Sbjct: 390 SDYTPEFNPFTDYFGGNARWDRTTDHIGKLADTIQAEDQEFWR-----------EGFRRW 438

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA-FGNQYVINAEASDIMQNRPP 544
               V  AL  G   Q+ + + G  G GKST +  +     G  Y               
Sbjct: 439 IVAMVASALQPGKANQQALVLHGAQGKGKSTWIRHLLPPELGEYY-----------RNGM 487

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                   L+ L    ++ + E       + A++K++ G + +T R  Y       P   
Sbjct: 488 IDPANKDDLLLLSTRLLINMEEFEGVKTGDIAELKRIIGQENVTIRKVYDTQAQLYPRRA 547

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFD----KPIANRDASFAQKLETKYTLEAKKW 658
           +     N   F+R  D    RR++VIP      +   +    +AQ ++       + W
Sbjct: 548 SFIGSTNNMQFLR--DYGGNRRFLVIPVKAIDYRTPVDHKGVYAQAVQLIE-DGFRYW 602


>gi|78212480|ref|YP_381259.1| hypothetical protein Syncc9605_0942 [Synechococcus sp. CC9605]
 gi|78196939|gb|ABB34704.1| hypothetical protein Syncc9605_0942 [Synechococcus sp. CC9605]
          Length = 321

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 58/218 (26%), Gaps = 33/218 (15%)

Query: 14  IHNGFKLIPLRLGD-KRPQRLGKWEEQL--LSSEKIDKLPAC-GFGFVCGVGEQPLYAFD 69
           + N  + IP   G   +   + +W +       E I++ P     G +     QPL  FD
Sbjct: 21  LENLVRFIPTGGGKEGKAPLISEWSKHPGFTIKELIEQFPRAKSIGVIT----QPLLCFD 76

Query: 70  IDSKDEKTANTFKDTFEILHGTPIV-RIGQKPKILIPFRMNKEGIKKKKTTESTQGHL-- 126
            D                   T  + R   K +  + F  +KE + +    + T  H   
Sbjct: 77  FDGATAVNHAVLDGRDPDDVNTWRINRTTDKNRFKLLFLPSKEQLAQLPNGQITNTHRTK 136

Query: 127 ---------------------DILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
                                +I    G+  +    HP +   Y W        +   P 
Sbjct: 137 RPSTERYPYEEMTFVVKGEAEEIFCHPGRQVIVAGAHPASGGHYFWPNGSGPEALSAPPA 196

Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202
                V  L + +        K   +   +        
Sbjct: 197 EWWGHVLTLARDYPHPAAGADKTVSTSRFASGNWQRLE 234


>gi|66392091|ref|YP_239316.1| possible integrase [Xanthomonas phage Xp15]
 gi|62529201|gb|AAX84884.1| possible integrase [Xanthomonas phage Xp15]
          Length = 806

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 33/189 (17%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID---------------KLP--- 50
            AK+   +G+ + P     + PQ+   W    ++ E ID                 P   
Sbjct: 8   FAKRFARDGYYVFPFYGSSEGPQKPYGWARNTVTKEGIDPRKIIPATDDPEIVETWPELI 67

Query: 51  ACGFG----FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP---IVRIGQKPKIL 103
           A G+        GV       FD+D K         + F   +G P    V   +     
Sbjct: 68  AAGYKGAKLVGYGVLGVNCVIFDLDVKGGVNGIAEFNKFSEKYGIPKSEFVVKSKSGGFH 127

Query: 104 IPFRMNKE----GIKKKKTT---ESTQGHLDILGCGQYFVAYNIH-PKTKKEYTWTTPPH 155
           + +   ++     +K         +    LD+ G G   V         +  YT      
Sbjct: 128 LYYAKPEKLRSLAVKTVAGLTIGGTKYPGLDVRGEGGMVVGPMAEGQWVEGTYTIVKGNT 187

Query: 156 RFKVEDTPL 164
              + + P 
Sbjct: 188 DTALSEVPT 196


>gi|123497493|ref|XP_001327188.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121910114|gb|EAY14965.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123300209|ref|XP_001291001.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121864403|gb|EAX78071.1| hypothetical protein TVAG_139410 [Trichomonas vaginalis G3]
          Length = 197

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 12/152 (7%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E+V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 53  WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 112

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 113 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 165

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
                    Y +       +    +  N    
Sbjct: 166 DKVGVVERKYKDQRVCENVANFIMVSNNAVPM 197


>gi|118197555|ref|YP_874267.1| helicase [Ecotropis obliqua NPV]
 gi|113472550|gb|ABI35757.1| helicase [Ecotropis obliqua NPV]
 gi|295442616|gb|ADG21232.1| helicase [Ecotropis obliqua NPV]
          Length = 1251

 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/393 (14%), Positives = 113/393 (28%), Gaps = 65/393 (16%)

Query: 423  DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
            D ++  +     ++ L      +          TG  +     +  +++ +         
Sbjct: 882  DLNTWLIRFYTRVI-LSKINLEEYNHFYINNIVTGYLYFRTFTNFNYINSL--------- 931

Query: 483  MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                        +  +  +  ++I G  GSGKS+   ++++     +  NA++  + +  
Sbjct: 932  --LVIHYCASLGIPSDYEKMCLYITGKPGSGKSSNTEILEHII-TVHKHNADSYTLSKKE 988

Query: 543  PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK-QMTGGDCMTARLNYGNTYSESP 601
              E               I  +   NE  E N +  K         +    Y     +  
Sbjct: 989  TDEMEA---------DKMISQLYVINEMKECNDSFFKTSADSTKSNSVCRKY-QGSQKYE 1038

Query: 602  ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------------------DASF 643
            A++   I+ NK L++ N D     R+ ++                           + S+
Sbjct: 1039 ANYKLMIINNKPLYISNYDKGVRNRFAIVNMKHEFVENYKFTGSVYSHIKQQKFPMERSY 1098

Query: 644  AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ-----GTDTYQAWI- 697
             + L     L      L   K     G       +   A             +T  A + 
Sbjct: 1099 YETLYKPVRL-FLSHILM-YKRSKRDGYVSYKNIIKNDAIHNYNLMCLDVNNNTVHALLY 1156

Query: 698  -------DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
                   +DC  I E+  E+   +A  Y E    +     K       T  + Q      
Sbjct: 1157 ILNVRITNDCKLIDESKIEKMIEMAAPYVETMIHDSM---KLKRNANNTARVPQLCVD-- 1211

Query: 751  IKREKIEKEWKSKRIIKGLKL---KPAFESVDD 780
             K++  E   ++ R   G+ L   K  F +   
Sbjct: 1212 FKKKFNEYYRENDRAYCGIDLAWKKNDFNTTPP 1244


>gi|221195525|ref|ZP_03568580.1| RecA-family ATPase [Atopobium rimae ATCC 49626]
 gi|221184712|gb|EEE17104.1| RecA-family ATPase [Atopobium rimae ATCC 49626]
          Length = 727

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 23/180 (12%)

Query: 218 GEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEE 276
             +    S+ EW+   MA+H     S    +    WS+Q  + Y E     KW +F    
Sbjct: 14  AIDPAGLSYQEWVDCGMALH----ESGFTWQDWDEWSRQDSARYHEGECERKWKSFGNGV 69

Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK 336
                 +R T  ++     +                  + +I      +    T  W   
Sbjct: 70  ------ERITSGTIIQMARERGWYPSQGP---------VRAIDWDEPIMVGGITPDW--- 111

Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396
                   +         + ++L ++ +D   +    E   K+ +      + D   + +
Sbjct: 112 VDEEDVDINGGTWHPARELSDYLQTLFDDSDHVCYVNETYEKDGRYMPKRGHWDRTAEQL 171


>gi|123156424|ref|XP_001278436.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121825281|gb|EAX65506.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|300361362|ref|ZP_07057539.1| phage protein [Lactobacillus gasseri JV-V03]
 gi|300353981|gb|EFJ69852.1| phage protein [Lactobacillus gasseri JV-V03]
          Length = 269

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 59/213 (27%), Gaps = 35/213 (16%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKI----DKLPACGFGFVCGVGEQP 64
            A      GF +IP+    K+P       +  L+ ++I     K P              
Sbjct: 8   YAVSYAEKGFSVIPI-GQSKKPLIKFA-GKPPLTPDEIRKIWQKYPLANIALKT----DK 61

Query: 65  LYAFD-------IDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
            +  D       +D  +        + F+           +       F   K    K  
Sbjct: 62  FFVIDVDRHSGEVDGMESIKNLHHDEWFKD------TLTEKTAHDGFHFFFTKPKDMKIS 115

Query: 118 TTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL--SEEDVEYLF 174
                   +D+      Y V         K+Y W        + + P+    +  ++ + 
Sbjct: 116 QNIGILPSVDLKAHENNYVVVAPSSLG-DKKYRW--------LNNAPMKAPPQGLLDLIK 166

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
           +  ++I    V +    +  +T T +      N
Sbjct: 167 EKQKDIPPTKVAEVLLGMRKRTKTTDLFETIIN 199


>gi|114319952|ref|YP_741635.1| ATPase-like protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226346|gb|ABI56145.1| plasmid and phage replicative helicase / plasmid and phage DNA
           primase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 667

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 62/239 (25%), Gaps = 34/239 (14%)

Query: 8   EQAKQAIHNGFKLIPLR--------LGDKRPQRLGKWEEQLLSSEK----IDKLPACGFG 55
           + A     NG  + P+           +K P       +    +E       + P     
Sbjct: 32  DTAAHLAENGIPVFPVNLSEPNADGKREKTPLTKHGHLDATTDAETVRQWWRRWPKAIPA 91

Query: 56  FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
              G     + A D+D           +  + L     +   ++ K    FR        
Sbjct: 92  VPTGKAS-GIDALDVD---PDGYEWAAEHSDSLMMAQRIHHTERGK-HYLFRHTD---GV 143

Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
           + +       +D+ G G + V +                    V D P    + +  +  
Sbjct: 144 RNSNGKISAGIDVRGEGGWIVWWPAK-------GLEAHGELADVSDAPEALADLMRGVRS 196

Query: 176 FFQEITVP-------LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
             +  + P       + + ++    ++         Y+  E+ A L            D
Sbjct: 197 STERDSAPVAADGAVIPEGQRDSTLTREAGRLRRYGYSESEMLAALHAINSHRCQPPLD 255


>gi|149003119|ref|ZP_01828028.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
 gi|147758860|gb|EDK65856.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
          Length = 173

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
            W+RR  +IPF      +      K       E  +W L  V            PE   K
Sbjct: 2   GWYRRLCIIPFRADFNGQKERHEIKDRFIKNKELLEWVLFKVLNM-PDFDSFIEPEAVQK 60

Query: 682 AKEEERQGTDTYQAWIDD 699
              + +   D  + W+++
Sbjct: 61  MLSKYKNDNDYIKVWVEN 78


>gi|123186229|ref|XP_001281462.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123195342|ref|XP_001283273.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123298008|ref|XP_001290874.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121836268|gb|EAX68532.1| conserved hypothetical protein [Trichomonas vaginalis G3]
 gi|121842391|gb|EAX70343.1| conserved hypothetical protein [Trichomonas vaginalis G3]
 gi|121864106|gb|EAX77944.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123251347|ref|XP_001288952.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121859138|gb|EAX76022.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196


>gi|123208850|ref|XP_001285170.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121848165|gb|EAX72240.1| hypothetical protein TVAG_435260 [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196


>gi|123202912|ref|XP_001284201.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121845204|gb|EAX71271.1| hypothetical protein TVAG_023620 [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTKYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMPASKRTFLANVKSL 196


>gi|123164790|ref|XP_001279177.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121828046|gb|EAX66247.1| hypothetical protein TVAG_585930 [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196


>gi|123242990|ref|XP_001288362.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121857450|gb|EAX75432.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKNL 196


>gi|123185550|ref|XP_001281343.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121835838|gb|EAX68413.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNSVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123318166|ref|XP_001292865.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121868943|gb|EAX79935.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFVSLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYIAASKRTFLANVKSL 196


>gi|322514371|ref|ZP_08067419.1| bacteriophage P4 DNA primase [Actinobacillus ureae ATCC 25976]
 gi|322119722|gb|EFX91766.1| bacteriophage P4 DNA primase [Actinobacillus ureae ATCC 25976]
          Length = 203

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 59/191 (30%), Gaps = 19/191 (9%)

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFA 644
           M     +   +     +    ++ N+            RR ++  F K +    RD +F 
Sbjct: 1   MRVNPKHKKPFFT-KITALIILINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFT 59

Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCD 702
           +K+         +  L      +     ++      +A  E ++ +D    + +     +
Sbjct: 60  EKIML-EVGGIIRKVLDTFPDSLEAKKALNTQMNSQEAL-EVKKLSDPLTDFFEHFYTTE 117

Query: 703 IGENLWEE---------SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
             + L+              +  +Y  Y       +   +      + ++Q     G + 
Sbjct: 118 QIDGLFVGVANMGVDKIRTHIYPAYLAY---TRAMNISELGLGNFVIGIEQALKQHGNQH 174

Query: 754 EKIEKEWKSKR 764
           + ++K  K+ R
Sbjct: 175 DFMKKHTKTGR 185


>gi|123299070|ref|XP_001290938.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121864255|gb|EAX78008.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKNL 196


>gi|123206430|ref|XP_001284926.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121847406|gb|EAX71996.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196


>gi|281203223|gb|EFA77424.1| hypothetical protein PPL_12640 [Polysphondylium pallidum PN500]
          Length = 557

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 110/361 (30%), Gaps = 40/361 (11%)

Query: 422 LDSSSRFLGEQDG--ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--FLDLVSGYF 477
           ++ +      Q+G  + +L  G K    +  +  K     +           L+ +   +
Sbjct: 172 MNPNKPLYYTQNGANMFNLFAGYKWT-DRNSFNVKMNEPEYAARMKLSIGVILNHIRKVW 230

Query: 478 --ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK-YAFGNQYVINAE 534
             ++++  D+    +   + G           G G +GKS +++ I+ +  G        
Sbjct: 231 CSDNQDQFDFVKYWITSVIAGRRPKLAIYLQSGQG-TGKSIIIDFIRDHVLGE------- 282

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND--EIN--AAKIKQMTGGDCMTAR 590
            S + Q++ P   +       L G  ++ + +   +   E N  +  IK +  G  +   
Sbjct: 283 -SIVFQSQDPSIVQPGSFNGPLAGKILISLEDLPTSSAGEWNKTSNSIKHLITGSNIVIN 341

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF----AQK 646
             +    +               + + + D    RRY ++       N    F    A  
Sbjct: 342 DKFKTQVTIDNHLSFIITSNTSAIKIEDDD----RRYAILDVSNIFKNNKDYFEWLAANH 397

Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
           L +        W +  V   + +   V   +     K +  +       +I +   + +N
Sbjct: 398 LTSAVGEAFYWWCVDNV-DLVKQFNRVPDTQTKTDIKSDHLR---PPLQFIKENFVLQKN 453

Query: 707 -LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
            L           +EY         K+IS  T     K  G  G   +E        K  
Sbjct: 454 ALEMTLKEFYDRLTEYCTN------KKISCPTKPQTKKILGEYGIETKEMCRGGVSGKNN 507

Query: 766 I 766
            
Sbjct: 508 W 508


>gi|123154829|ref|XP_001278101.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121824021|gb|EAX65171.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123178038|ref|XP_001280154.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121831544|gb|EAX67224.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSESHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKNL 196


>gi|189462690|ref|ZP_03011475.1| hypothetical protein BACCOP_03387 [Bacteroides coprocola DSM 17136]
 gi|189430559|gb|EDU99543.1| hypothetical protein BACCOP_03387 [Bacteroides coprocola DSM 17136]
          Length = 397

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/311 (11%), Positives = 79/311 (25%), Gaps = 49/311 (15%)

Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
                  + +   ++ + ++P  +    +    W                K     +   
Sbjct: 1   MEKKEEFIRVGTTLYKIVDQPRIDGGYVRKRIAWN------SETLRQDYGKDYMAGIPKY 54

Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
             F    D +D         +        + +                 +         L
Sbjct: 55  DGFCTVPDHVDYKPVVGKFLN------LYEPISHRP-------------QEGDFPCIRSL 95

Query: 473 VSGYFES--EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
           V   F    E+ MDY        L    K    + +     +GKST +N +K        
Sbjct: 96  VEHIFGEQYEQGMDYLQLLY---LYPIQKQPILLLVSEERNTGKSTFLNFLKAI-----Y 147

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
            N    +  ++   +            G  ++++ E   N   ++ ++K ++        
Sbjct: 148 QNNVTFNTNEDFRSQFNS------DWAGKLLIMVDEVLLNRREDSERLKNLSTTLSYKVE 201

Query: 591 LNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLE 648
               +       A F           + +  +  +W R  ++P        D  F QKL 
Sbjct: 202 AKGKDRDEIGFFAKFVLCSNNEHLPVIIDAGETRYWVR-KIVPLKS----DDTDFLQKL- 255

Query: 649 TKYTLEAKKWF 659
                    + 
Sbjct: 256 KTEIPAFLHFL 266


>gi|123237165|ref|XP_001287104.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121853910|gb|EAX74174.1| hypothetical protein TVAG_257560 [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKNL 196


>gi|123376374|ref|XP_001297952.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121878332|gb|EAX85022.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----TDFVSLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKNL 196


>gi|218131551|ref|ZP_03460355.1| hypothetical protein BACEGG_03171 [Bacteroides eggerthii DSM 20697]
 gi|217986483|gb|EEC52820.1| hypothetical protein BACEGG_03171 [Bacteroides eggerthii DSM 20697]
          Length = 405

 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 74/238 (31%), Gaps = 34/238 (14%)

Query: 435 ILDLETGQKVKPTKELYITKSTGTP--FVEGEPSQ------EFLDLVSGYFESE-EV-MD 484
            +D   G    P+   Y     G    +   +         +   L+   FE + E+ +D
Sbjct: 56  TIDKYNGFCTVPSHTDYQKDVAGFYNLYEPIDHVPAEGNFSDIEKLLHHIFEEQYELGLD 115

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
           Y        +    K    + +     +GK+T +N +K  F +    N       Q    
Sbjct: 116 YMQLLY---MQPTQKLPILLLVSEERNTGKTTFLNFLKSIFQDNATFNTNEDFRSQFN-- 170

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                        G  ++++ E   +   ++ ++K ++           G    E     
Sbjct: 171 ---------ADWAGKLLIVVDEVLLSRREDSERLKNLSTAQTYKVEAK-GKDRQEVNFFA 220

Query: 605 TPFIVPNKHLFVRNPDDA---WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
              +  N  L+    D     +W R I     +P+ + D +F QKL  +       + 
Sbjct: 221 KFVLCSNNELYPVIIDPGENRYWVRKI-----RPLESDDTNFLQKL-KEQIPAFLYYL 272


>gi|123316761|ref|XP_001292444.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121867977|gb|EAX79514.1| hypothetical protein TVAG_187430 [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSIYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196


>gi|123184152|ref|XP_001281041.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121834756|gb|EAX68111.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 202

 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123145441|ref|XP_001277544.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121821678|gb|EAX64614.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.7 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|220908021|ref|YP_002483332.1| hypothetical protein Cyan7425_2616 [Cyanothece sp. PCC 7425]
 gi|219864632|gb|ACL44971.1| hypothetical protein Cyan7425_2616 [Cyanothece sp. PCC 7425]
          Length = 142

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 27/109 (24%)

Query: 18  FKLI-PLRLGDKRPQRLGKWEEQLLSSEKI--DKLPA---CGFGFVCGVGEQPLYAFDID 71
           +    P++ G K P     ++++ L++ ++           G G + G     L A D D
Sbjct: 42  YAKFTPVKKG-KLP-----YQDEPLTAVEVLERHYNDSCFTGVGLLTGEASGGLVAVDHD 95

Query: 72  SKDEKTANTFKDTFEILHGTPIV---------RIGQKPKILIPFRMNKE 111
                      +  + L G P             G+  +  + + ++KE
Sbjct: 96  GHSAD------EVLKELAGCPPEEALPPTLHWTSGRTGRYQMLYPVSKE 138


>gi|123234264|ref|XP_001286530.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121852200|gb|EAX73600.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKNL 179


>gi|123455067|ref|XP_001315281.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121897953|gb|EAY03058.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 207

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|237725041|ref|ZP_04555522.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|255689901|ref|ZP_05413576.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|229436779|gb|EEO46856.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|260624507|gb|EEX47378.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
          Length = 405

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 465 PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
             +    LV   F  + E+ MDY        L    K    + +     +GKST +N +K
Sbjct: 94  DFKHIRSLVEHIFGEQYELGMDYLQLLY---LKPTQKLPILLLVSEERNTGKSTFLNFLK 150

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
             F +    N       Q                 G  ++++ E   N   ++ ++K ++
Sbjct: 151 ALFQDNVTFNTNEDFRSQFN-----------ADWAGKLMIVVDEVLLNRREDSERLKNLS 199

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRRYIVIPFDKPIANR 639
                       + Y E        +  N     +++   +  +W R +     + +   
Sbjct: 200 TAHSYKMESKGKDRY-EVQFFAKFVLCSNNENFPVYIEPEETRYWVRKV-----RRLEKD 253

Query: 640 DASFAQKLETKYTLEAKKWFL 660
           D SF QKL          + L
Sbjct: 254 DTSFLQKL-KNEIPAFLHYLL 273


>gi|123307542|ref|XP_001291384.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121865349|gb|EAX78454.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123317250|ref|XP_001292596.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121868313|gb|EAX79666.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196


>gi|154151131|ref|YP_001404749.1| hypothetical protein Mboo_1589 [Candidatus Methanoregula boonei
           6A8]
 gi|153999683|gb|ABS56106.1| conserved hypothetical protein [Methanoregula boonei 6A8]
          Length = 187

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/198 (10%), Positives = 51/198 (25%), Gaps = 35/198 (17%)

Query: 4   MQWKEQAKQAIHNGFKLIPLRLGDKR-----PQRLGKWEEQLLSSEKIDKLPACGFGFVC 58
           + W+ + +   +      P      +           W     +   ++     G GFV 
Sbjct: 19  VVWRYEER---NGKLTKPPYVPAPGKMRHALVNVPSTWGTFEQAKNTVNAGGFDGIGFVL 75

Query: 59  GVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118
           G     ++  D D   +              G+          + +  R       +K  
Sbjct: 76  GE---GIFGIDFDHATDAMVQEALSL-----GSYTEWSPSGHGVHVIGRSAIVLKGRK-- 125

Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
               +G +++   G+YF                         D  ++S + +   F+   
Sbjct: 126 ----KGSVELYMQGRYFTVTGSVV-------------PGSPPDIRVISPDRLLDFFRRHF 168

Query: 179 EITVPLVKDKKSIIPSKT 196
           E      ++  +   +  
Sbjct: 169 EDEPVPGRNNGTGSDTPE 186


>gi|123373543|ref|XP_001297628.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121877866|gb|EAX84698.1| hypothetical protein TVAG_353010 [Trichomonas vaginalis G3]
          Length = 211

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123155901|ref|XP_001278334.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121824860|gb|EAX65404.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 201

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|315607215|ref|ZP_07882219.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315251269|gb|EFU31254.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 396

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 65/233 (27%), Gaps = 27/233 (11%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489
           DG   +      +P  + ++           E        L+   F  + E+ +DY    
Sbjct: 54  DGFCTVPNHVDYQPVIDKFLNLYEPIGHQPKEGEFPHIESLIRHIFGEQYELGIDYLQLL 113

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
               L    K    + +     +GKST +N +K  F N    N       Q         
Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFQNNVTFNTNEDFRSQFN------- 163

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                   G  ++++ E   N   ++ ++K ++           G    E        + 
Sbjct: 164 ----ADWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTLEAKKWF 659
            N  L     D    R      + + I      D  F QKL          + 
Sbjct: 219 SNNELLPVIIDVGETR-----YWVRKIERLKSDDTDFLQKL-KAEIPAFLYFL 265


>gi|291444711|ref|ZP_06584101.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291347658|gb|EFE74562.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 195

 Score = 55.3 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 10/133 (7%)

Query: 11  KQAIHNGFKLIPLRLG--DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAF 68
            + I +  + +PL +G           W       E        G GFV       +   
Sbjct: 48  PRWIRHTARKVPLTIGGATASSTDPSTWSRYS---EAAASGKGAGLGFVL--NGDGVVCL 102

Query: 69  DIDSKDEKTANT--FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
           D+D   ++      +  T     G   V + +    L  +        ++ T     G +
Sbjct: 103 DLDHCLDEHGEPAGWARTILDAAGPTWVEVSRSGDGLHLWGYGTLPHGRRITVGGG-GSV 161

Query: 127 DILGCGQYFVAYN 139
           ++ G G+Y     
Sbjct: 162 ELYGTGRYIAVTG 174


>gi|327312672|ref|YP_004328109.1| hypothetical protein HMPREF9137_0377 [Prevotella denticola F0289]
 gi|326944557|gb|AEA20442.1| conserved hypothetical protein [Prevotella denticola F0289]
          Length = 396

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 68/233 (29%), Gaps = 27/233 (11%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489
           DG   +      +P  + ++           E        L+   F  + E+ +DY    
Sbjct: 54  DGFCTVPNHVNYQPVVDKFLNLYEPIGHQPKEGEFPHIESLIHHIFGEQYELGIDYLQLL 113

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
               L    K    + +     +GKST +N +K  F N    N       Q         
Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFQNNVTFNTNEDFRSQFN------- 163

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                   G  ++++ E   N   ++ ++K ++           G    E        + 
Sbjct: 164 ----ADWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218

Query: 610 PNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
            N      + +  +  +W R I       + + D  F +KL          + 
Sbjct: 219 SNNELLPVIIDVGETRYWVRKI-----NSLESDDTDFLRKL-KAEIPAFLYFL 265


>gi|284162058|ref|YP_003400681.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM
           5631]
 gi|284012055|gb|ADB58008.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM
           5631]
          Length = 309

 Score = 55.3 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 72/252 (28%), Gaps = 39/252 (15%)

Query: 3   VMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKW-----------EEQLLSSEKIDKLPA 51
             ++    ++    G+K IPL    KRP     W             +   +E +     
Sbjct: 9   KNEYLSLLEKYDQLGWKFIPL--EGKRPF-WKGWDDPEKWYSGEYSNEETINEIVTSRFK 65

Query: 52  CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE 111
              G V G   + +   D+D   +      +   +      +     +   L+    N E
Sbjct: 66  FNVGIVTGSLSK-ILRIDVDQP-KILGWNPEPAIKKGG---LAHTTSRGVALVVRSENPE 120

Query: 112 GIKKKKTTESTQGHL-------------------DILGCGQYFVAYNI-HPKTKKEYTWT 151
            +   K     +  +                   +ILG G+ FVA    HP  +  Y W 
Sbjct: 121 VLAFSKKLVKRKEEIDQSLLFYPEDAGKETVTILEILGDGRQFVAPPSIHPDKRTRYEWL 180

Query: 152 TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT 211
           TP      +   + S E++  L          + +  +     K+  +         ++ 
Sbjct: 181 TPLPNSPDQILTINSIEELYSLLLECCANKELINELFEDYFKEKSRADTGEEGKKADDLL 240

Query: 212 AFLSCFGEEFYN 223
                   +  +
Sbjct: 241 EKWLEILLKHLD 252


>gi|123381955|ref|XP_001298632.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121879256|gb|EAX85702.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|307269951|ref|ZP_07551277.1| primase 2 [Enterococcus faecalis TX4248]
 gi|306513741|gb|EFM82347.1| primase 2 [Enterococcus faecalis TX4248]
          Length = 758

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 54/206 (26%), Gaps = 22/206 (10%)

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE 248
           +     +        +    E+  ++           + EW+ V MA+  E   +     
Sbjct: 2   RLKNKKRELNTQMENKLDLIELLEYIDPASL-----GYQEWVNVGMALKQEGYTAVD--- 53

Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
              +WS+  S Y       KW++F             T  ++     +     L      
Sbjct: 54  -WDQWSQSDSRYHSGECFKKWESF------QGTSSPITGATITQLAKENGWTSLFK-SGD 105

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
             +        +K         + W +       I      +    I+ +L ++ E    
Sbjct: 106 GGHELDWNDTLQKDDL--VIIDRNWIE----GKEIQEPKKWEPAKEIIRYLETLFEPSET 159

Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQ 394
           ++   +         +      Y R 
Sbjct: 160 VAYNVQSWQDEDGKWKPSNKGAYDRT 185


>gi|123974668|ref|XP_001330087.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121895879|gb|EAY01049.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    ++D    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFVDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196


>gi|123197412|ref|XP_001283786.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121843948|gb|EAX70856.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123174757|ref|XP_001279883.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121830580|gb|EAX66953.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 210

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|331091444|ref|ZP_08340282.1| hypothetical protein HMPREF9477_00925 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404000|gb|EGG83550.1| hypothetical protein HMPREF9477_00925 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 741

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 46/175 (26%), Gaps = 27/175 (15%)

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           +I   L        N  + EWI V MA+            +   WS+  S Y       K
Sbjct: 6   DIKQILDFLNPSELN--YQEWIYVGMALK----EDGYDVSVWDSWSRSDSRYHSGECQRK 59

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS---RFSDAYNKAMFSIYKKGHFL 325
           W  F             T  ++         K  +      ++D          K    +
Sbjct: 60  WAGFHGNGY------PVTAGTIVQMAKDRGWKPEIQGYELDWNDDIFIE-----KDDKVV 108

Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
                K W +  +              + ++ +L ++ E   ++    +      
Sbjct: 109 VD---KTWIENVEVQQP----KAWNPASQLIKYLETLFESSENVGYVTQSWKNED 156


>gi|331090165|ref|ZP_08339053.1| hypothetical protein HMPREF1025_02636 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330402111|gb|EGG81683.1| hypothetical protein HMPREF1025_02636 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 668

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 14/99 (14%)

Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE 276
              +    S  +WI V MA+  E    S    I   WS+    Y       KW++F    
Sbjct: 10  KAIDVATLSRADWIAVGMALKEEGYPCS----IWDDWSRNDKRYHPGECERKWNSFHGSG 65

Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASR----FSDAY 311
                       ++     +              + DA 
Sbjct: 66  T------PVKGGTIVQMAKERGWTPFSGEDGCLNWDDAI 98


>gi|123275204|ref|XP_001289903.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121861630|gb|EAX76973.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 213

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123337149|ref|XP_001294312.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121872111|gb|EAX81382.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123315019|ref|XP_001291980.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121866845|gb|EAX79050.1| hypothetical protein TVAG_153080 [Trichomonas vaginalis G3]
          Length = 236

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 12/151 (7%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E+V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 87  WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 147 LEGYSNPNMTNIENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
                    Y +       +    +  N   
Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVP 230


>gi|123320987|ref|XP_001293288.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121869933|gb|EAX80358.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----TDFVSLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123242108|ref|XP_001288163.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123244167|ref|XP_001288618.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121856910|gb|EAX75233.1| hypothetical protein TVAG_443280 [Trichomonas vaginalis G3]
 gi|121858142|gb|EAX75688.1| hypothetical protein TVAG_017120 [Trichomonas vaginalis G3]
          Length = 196

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123476492|ref|XP_001321418.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121904244|gb|EAY09195.1| hypothetical protein TVAG_308840 [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196


>gi|123174904|ref|XP_001279895.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121830621|gb|EAX66965.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 202

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123329426|ref|XP_001293819.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121871081|gb|EAX80889.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123205777|ref|XP_001284757.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121846924|gb|EAX71827.1| hypothetical protein TVAG_561730 [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123195083|ref|XP_001283219.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121842186|gb|EAX70289.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123186361|ref|XP_001281482.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121836343|gb|EAX68552.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123169872|ref|XP_001279496.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121829217|gb|EAX66566.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|115352457|ref|YP_774296.1| TOPRIM domain-containing protein [Burkholderia ambifaria AMMD]
 gi|115282445|gb|ABI87962.1| TOPRIM domain protein [Burkholderia ambifaria AMMD]
          Length = 797

 Score = 54.9 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
              D W+ + MA+  E      G +    WS+  S Y E +    W +F    I   +  
Sbjct: 20  DDRDTWVQMGMAIKAEF--GEAGFDFWDDWSRSASNYSEADAKSVWKSFRSGGITIASLF 77

Query: 284 RSTFTSLFYHHGK 296
           +      +     
Sbjct: 78  KRAIEHGYRESEP 90


>gi|123474667|ref|XP_001320515.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121903322|gb|EAY08292.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 210

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123350206|ref|XP_001295249.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121873925|gb|EAX82319.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|309702931|emb|CBJ02262.1| putative virulence associated protein virE [Escherichia coli ETEC
           H10407]
          Length = 574

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 65/533 (12%), Positives = 127/533 (23%), Gaps = 120/533 (22%)

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
           G +++L  GQ FVA   H  +     W         ++ P ++ E +E L++   E    
Sbjct: 2   GIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQLPV 56

Query: 184 LVKDKKSIIPSKTWTNNNNRQYTN-REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242
            V  +      +  +        +  E          +  NG    +I       H + G
Sbjct: 57  SVTTEAGNTKMRDRSAFTPGATDDTAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGG 114

Query: 243 SSKGKEIARRWSKQGSTYDEE-------NFNYKWDTFDFEEIGDTAKKRSTFTSL----- 290
                     +    + +++        +  ++ D      IG         TS+     
Sbjct: 115 DPT---STVYFPAGTAGFEQGHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSIEVAEP 171

Query: 291 ---------FYHHGKLIPKGLLAS--RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN 339
                     +   +        +  R         F  ++       A +  W      
Sbjct: 172 LPLPAFERDKWGRIEATISNAAKAVVRSDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD- 230

Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
                     +IT     F    +E + D+     D                        
Sbjct: 231 ----ADYARLRITMEKRGFKPVGRELIRDVVLLAAD------------------------ 262

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
                  +     +I  +     D   R                           +  TP
Sbjct: 263 -------EQPFDSAITWLNGLEWDGVPRIECF-----------------YHTHFGTADTP 298

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
           +        +                     G  L  G KA     + G  G GKS+ + 
Sbjct: 299 YTRAVSMYMWT-----------------ALAGRVLEPGIKADMVPILVGPQGCGKSSGVE 341

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKI 578
            +          + + +   +    E       L R + G  +  I E    +      I
Sbjct: 342 AL----------SPDPAFFTEISFAEKDD---DLARKMRGRLVAEIGELRGLNTKELESI 388

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
           K             Y    ++ P         N+  F+ +      RR++ + 
Sbjct: 389 KAFVTRTHENWIPKYREFATQFPRRLVFVGTTNEDEFLADKTG--NRRWLPVE 439


>gi|253566060|ref|ZP_04843514.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945164|gb|EES85602.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301164394|emb|CBW23952.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 719

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 101/315 (32%), Gaps = 40/315 (12%)

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
           +++   +       +  V D  E  + +    KS     N D+    +  + +  +   +
Sbjct: 323 EQVIDYLNKNYAFRRNTVLDRLEMCDLSQTEEKSFYAMRNKDFNSIFLNISRQGIAYPLN 382

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
                I S  S   +  + +            G      K  +I K   T   E +    
Sbjct: 383 SLKSVIDSDYSPEFNPFTHYF----------EGNARWDRKTDHIRKLADTIQAEDQEFWR 432

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                      E    +    V  AL  G   Q  + + G  G GKST +  +       
Sbjct: 433 -----------EGFRRWIVAMVASALRPGKANQEALVLHGAQGKGKSTWIRHL------- 474

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCM 587
                        R      AN   + L+ +R++I  E  E  +  + A++K++ G + +
Sbjct: 475 ----LPPELAEYYRNGMIDPANKDDLLLLSTRLLINMEEFEGVKTGDIAELKRIIGQENV 530

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD----KPIANRDASF 643
           T R  Y       P   +     N   F++  D    RR++VIP      +   +    +
Sbjct: 531 TIRKVYDTQAQLYPRRASFIGSTNNMQFLK--DYGGNRRFLVIPVKTIDYRTPVDHKGVY 588

Query: 644 AQKLETKYTLEAKKW 658
           AQ ++       + W
Sbjct: 589 AQAVQLIE-DGFRYW 602


>gi|123225083|ref|XP_001285735.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121849888|gb|EAX72805.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|53714955|ref|YP_100947.1| hypothetical protein BF3670 [Bacteroides fragilis YCH46]
 gi|52217820|dbj|BAD50413.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 719

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 101/315 (32%), Gaps = 40/315 (12%)

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
           +++   +       +  V D  E  + +    KS     N D+    +  + +  +   +
Sbjct: 323 EQVIDYLNKNYAFRRNTVLDRLEMCDLSQTEEKSFYAMRNKDFNSIFLNISRQGIAYPLN 382

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
                I S  S   +  + +            G      K  +I K   T   E +    
Sbjct: 383 SLKSVIDSDYSPEFNPFTHYF----------EGNARWDRKTDHIRKLADTIQAEDQEFWR 432

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                      E    +    V  AL  G   Q  + + G  G GKST +  +       
Sbjct: 433 -----------EGFRRWIVAMVASALRPGKANQEALVLHGAQGKGKSTWIRHL------- 474

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCM 587
                        R      AN   + L+ +R++I  E  E  +  + A++K++ G + +
Sbjct: 475 ----LPPELAEYYRNGMIDPANKDDLLLLSTRLLINMEEFEGVKTGDIAELKRIIGQENV 530

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD----KPIANRDASF 643
           T R  Y       P   +     N   F++  D    RR++VIP      +   +    +
Sbjct: 531 TIRKVYDTQAQLYPRRASFIGSTNNMQFLK--DYGGNRRFLVIPVKTIDYRTPVDHKGVY 588

Query: 644 AQKLETKYTLEAKKW 658
           AQ ++       + W
Sbjct: 589 AQAVQLIE-DGFRYW 602


>gi|123205982|ref|XP_001284808.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121847076|gb|EAX71878.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    ++D+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123472584|ref|XP_001319485.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121902269|gb|EAY07262.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123395142|ref|XP_001300690.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121881768|gb|EAX87760.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLETNKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123184615|ref|XP_001281143.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121835117|gb|EAX68213.1| hypothetical protein TVAG_513440 [Trichomonas vaginalis G3]
          Length = 194

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISNFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|60682929|ref|YP_213073.1| hypothetical protein BF3469 [Bacteroides fragilis NCTC 9343]
 gi|60494363|emb|CAH09159.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 719

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 101/315 (32%), Gaps = 40/315 (12%)

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
           +++   +       +  V D  E  + +    KS     N D+    +  + +  +   +
Sbjct: 323 EQVIDYLNKNYAFRRNTVLDRLEMCDLSQTEEKSFYAMRNKDFNSIFLNISRQGIAYPLN 382

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
                I S  S   +  + +            G      K  +I K   T   E +    
Sbjct: 383 SLKSVIDSDYSPEFNPFTHYF----------EGNARWDRKTDHIRKLADTIQAEDQEFWR 432

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                      E    +    V  AL  G   Q  + + G  G GKST +  +       
Sbjct: 433 -----------EGFRRWIVAMVASALRPGKANQEALVLHGAQGKGKSTWIRHL------- 474

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCM 587
                        R      AN   + L+ +R++I  E  E  +  + A++K++ G + +
Sbjct: 475 ----LPPELAEYYRNGMIDPANKDDLLLLSTRLLINMEEFEGVKTGDIAELKRIIGQENV 530

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD----KPIANRDASF 643
           T R  Y       P   +     N   F++  D    RR++VIP      +   +    +
Sbjct: 531 TIRKVYDTQAQLYPRRASFIGSTNNMQFLK--DYGGNRRFLVIPVKTIDYRTPVDHKGVY 588

Query: 644 AQKLETKYTLEAKKW 658
           AQ ++       + W
Sbjct: 589 AQAVQLIE-DGFRYW 602


>gi|123296048|ref|XP_001290772.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121863837|gb|EAX77842.1| hypothetical protein TVAG_335360 [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196


>gi|123241663|ref|XP_001288069.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121856640|gb|EAX75139.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKNL 196


>gi|255066375|ref|ZP_05318230.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
 gi|255049255|gb|EET44719.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
          Length = 946

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 86/297 (28%), Gaps = 32/297 (10%)

Query: 484 DYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLI-KYAFGNQYVINAEASDIMQ 540
           ++    +           A   + I    G GKST    + K  FG           + Q
Sbjct: 615 EWVLNWLACRFRRPAEKPATALVFISETQGVGKSTFGEKVVKELFGEY------LRQLDQ 668

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSE 599
           N       A+     +     +    +  ++ +N   K+K M   D +       +    
Sbjct: 669 NALESRFNASLLFALVT----IFEEISPSDERLNVIGKLKNMITSDVIMVERKGRDAEKH 724

Query: 600 SPASFTPFIVPNKH-LFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKK 657
           +  +       ++  + + + D    RR++V+  ++  ++        +++     E  +
Sbjct: 725 NDFNSFIIFSNDERSIPIESND----RRFMVLSCNRKYSDAQYEALQAEIDNGGVDEFAR 780

Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY-----QAWIDDCCDIG---ENLWE 709
           +       Y                  E ++          +A++DD          +  
Sbjct: 781 FLYALPLMYSDGDTRRAFTPHTKPLTTEIKRRMINLNKPSWEAFLDDWWRGDLGLPFISC 840

Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
            +  L  +Y ++      +    +  +    N+ ++          I  + K  R  
Sbjct: 841 AAGDLWSAYKKWCIDTKTFH---MQQKNFYANMAKR-LADLRSTVTIHGQPKKVRFF 893


>gi|123196889|ref|XP_001283654.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121843557|gb|EAX70724.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123185719|ref|XP_001281374.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121835953|gb|EAX68444.1| hypothetical protein TVAG_546850 [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKNL 196


>gi|311694870|gb|ADP97743.1| conserved hypothetical protein [marine bacterium HP15]
          Length = 527

 Score = 54.9 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 64/442 (14%), Positives = 127/442 (28%), Gaps = 56/442 (12%)

Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT--LD--KITASIMNFLVSMKEDVF 367
               +++      +Y +  +  YK+      + +              M ++    +   
Sbjct: 49  ALQRYALIHGETKVYDSHQQKVYKQAGMKATMGNELFNAWMKHPNRRTMTWIEVNGQQQK 108

Query: 368 DLSEE--PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
           D S +   +   +           D RRQ+V      K+   +     +      ++D  
Sbjct: 109 DASNDPLMQIIERFVYIYPTKNAWDRRRQDVVPLEALKAYMPNDYTRWMEHPRRQVIDQD 168

Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------SQEFLDLVSGYF 477
                  + + D           E  I   TG P V  E          +   DL+    
Sbjct: 169 -------NIVFDPTQQS----DTETTINTFTGIPLVPDEKAKAEKYRKCKGIFDLLCHLC 217

Query: 478 E-SEEVMDYFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAFGNQYVINA 533
              ++ +D+  R +   L  +G       +    V GSGKS     +++  +G    I  
Sbjct: 218 NQDQDTIDWVVRWLAYPLQNVGAKLDTALLFHSDVHGSGKSLFFGEVMRMIYGRYAAILG 277

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLN 592
           +     Q              RL+    V     + +++ N    IK M  G        
Sbjct: 278 QHQLESQ--------YTDWRSRLL--YAVFEEVLSRSEKHNQMGTIKHMITGQTQRIERK 327

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
           +   + E+      F+      F   P D   RR++V+    P          K+  +  
Sbjct: 328 FVTGWEEANHMNGVFLSNEIQPFPLEPSD---RRFLVV---WPKGTLSKELQDKVSYELD 381

Query: 653 LEAKKWFLKGVKAY-ISKGLDVDIP--EVCLKAKEEERQGTDTYQAWIDDC----CDIGE 705
                 F + +  Y ++       P   V  +   E       ++ +  D      DI  
Sbjct: 382 NGGPAAFYQLLLDYPLADFTKHTKPLDTVARQRVIEFSLPN--FEVFFRDWKAGDLDI-P 438

Query: 706 NLWEESHSLAKSYSEYREQELN 727
                +  +   Y  +  +  N
Sbjct: 439 FHSCTTRDVYLFYRRWCTETGN 460


>gi|123192730|ref|XP_001282658.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121840394|gb|EAX69728.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.5 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELKSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|89055389|ref|YP_510840.1| hypothetical protein Jann_2898 [Jannaschia sp. CCS1]
 gi|88864938|gb|ABD55815.1| hypothetical protein Jann_2898 [Jannaschia sp. CCS1]
          Length = 825

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 71/304 (23%), Gaps = 28/304 (9%)

Query: 465 PSQEFLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLI 521
                   +        E    Y  R +   L      A+  +  RG  G+GK      +
Sbjct: 498 DWSLMRAHIRDVLASGDEASDSYIIRWMAWTLQNPDEPAEVALTFRGEPGTGKGVFGRTM 557

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQ 580
              FG   +    +  I                      ++   E   + D    AK+K 
Sbjct: 558 AQLFGQHGLHTGGSEMITGRFNK----------HFRDCCLLFADEVVWDGDRKAEAKVKT 607

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
                 +       +     P      I  N    V      + RRY V  FD     R 
Sbjct: 608 FLTEPTLMIEGKGVDA-VTWPNMLHVIISSNSEWVVPA--GPFERRYAV--FDVAATQRQ 662

Query: 641 ASFAQKLETKYT-LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG-TDTYQAWID 698
                               L  + A                A  +++    D   A + 
Sbjct: 663 KRGYFAPLFAELESGGLAAMLCDLLAMDLGRWHPREDVPKTDALNDQKSRGLDPVHAAVL 722

Query: 699 DCC-------DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
           D         DI  +          +  E         R  +++  V+  L + G     
Sbjct: 723 DMLREGALPSDISADARGTDARPFVATDELAAFVQRQSRAVVTSVVVSKLLDKIGGEKNR 782

Query: 752 KREK 755
           KR  
Sbjct: 783 KRRP 786


>gi|154421598|ref|XP_001583812.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121918056|gb|EAY22826.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196


>gi|123346584|ref|XP_001295005.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121873490|gb|EAX82075.1| hypothetical protein TVAG_092290 [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|83719431|ref|YP_443632.1| hypothetical protein BTH_I3137 [Burkholderia thailandensis E264]
 gi|83653256|gb|ABC37319.1| hypothetical protein BTH_I3137 [Burkholderia thailandensis E264]
          Length = 647

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 71/285 (24%), Gaps = 39/285 (13%)

Query: 5   QWKEQAKQAIHNGFKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           QW     +     +  +P +   +    +    W       ++       G G V     
Sbjct: 17  QWLLWQYEYDGKRWTKVPKQSNGRHASTKNPNTWTNFDQVRDEYQSGEFDGIGIVL---V 73

Query: 63  QPLYAFDIDS-KDEKTA-NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             L+  D D   D       + D          V        L  F + +     K    
Sbjct: 74  DGLFGIDFDHVLDADCNPEAWADDVLRQFPHTYVERSPSGDGLHLFGLGELVECGKAGPG 133

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           +     D     +YF        T  E+        + V +         E+   ++ + 
Sbjct: 134 NRLECYDQKSP-RYFT------MTGHEFR-----SGYDVTEQQEGQSWLHEH---YYSQS 178

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG---SHDEWIPVVMAVH 237
             P+  +   ++  +     ++              F   F++G    H       +A+ 
Sbjct: 179 AKPVDSNVVELVQRQGKVLTDDEIIERASHIGDGERFRNLFHDGHCFDHPSASEADLALC 238

Query: 238 H--------------ETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           +                R S   +E        G TY +   +  
Sbjct: 239 NMFARFTRDADQIDGLFRRSGLYREKWDESHTAGQTYGQTTISKA 283


>gi|323445092|gb|EGB01888.1| hypothetical protein AURANDRAFT_69397 [Aureococcus anophagefferens]
          Length = 206

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 19/187 (10%)

Query: 386 WFNTDYRRQNVEENSKAK----STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441
           W       +++ +N  A     S           +I     D   R     +G+L L   
Sbjct: 25  WNQAISLVEDMVKNGVASMNIGSIMLFSTTWFHHTINLSDCDDPPR---FNNGVLRLCDM 81

Query: 442 QKVK-PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES--------EEVMDYFTRCVGM 492
           +       +++++ S G  + +   S E +D+   + +          ++       +  
Sbjct: 82  KFSDVGFDDVFLSWSCGYDYPQEPISDEIIDIFETWLDKYARAANETVDMKADIKTMIVE 141

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
            L   N  +R   + G GG+GKS L NL+    G   V     +     +  EA   NP 
Sbjct: 142 TLCDKNSKERAFFLMGEGGNGKSVLCNLLCNLLGEYAVNVPFETLT---KSIEAEGKNPF 198

Query: 553 LIRLMGS 559
           + R+   
Sbjct: 199 IKRMRYK 205


>gi|123194442|ref|XP_001283063.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121841701|gb|EAX70133.1| hypothetical protein TVAG_079930 [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196


>gi|123293825|ref|XP_001290646.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121863516|gb|EAX77716.1| hypothetical protein TVAG_551210 [Trichomonas vaginalis G3]
          Length = 202

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y ++      +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     +    +  SL   Y +Y ++
Sbjct: 125 DISNFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMPASKRTFLANVKSL 196


>gi|123490202|ref|XP_001325562.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121908463|gb|EAY13339.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLLTDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123205190|ref|XP_001284609.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121846485|gb|EAX71679.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKNL 179


>gi|70606445|ref|YP_255315.1| hypothetical protein Saci_0633 [Sulfolobus acidocaldarius DSM 639]
 gi|68567093|gb|AAY80022.1| hypothetical protein Saci_0633 [Sulfolobus acidocaldarius DSM 639]
          Length = 533

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 71/240 (29%), Gaps = 20/240 (8%)

Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
             ++G+     G+ +   + ++        + E   + E   L++        +D     
Sbjct: 216 PFKNGLYC--DGKLINNFRGIWTYH-LPYEYREISGN-EVEQLLNKLSGYYPNIDDVLNI 271

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           + +  +     ++ + + G    GK  L+  I  +F                     G +
Sbjct: 272 MALPFINRV-QRKVVILYGPPRGGKDYLIEKILMSF---------VKITSLRPEVVTGDS 321

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
              L  L   R V I E        A  +  ++GG  M A         E       ++ 
Sbjct: 322 RFELCGLWNFRAVYIGEVEYIGSKLATFLDNLSGGVLMKAECKNKAP-IEMVFKGPVYLS 380

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            N+   + +    ++ R  V+ F         +    L+           ++  +A   K
Sbjct: 381 ANRL-IIEDLPSGFYDRAEVVVFKNRF----NAPKYILDESEKEVLINILIRRAQALSEK 435


>gi|53747893|emb|CAF05638.1| hypothetical protein [Angiococcus disciformis]
          Length = 781

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 54/451 (11%), Positives = 129/451 (28%), Gaps = 53/451 (11%)

Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
            W+  +      W  TL +        +  + + +  +    E+  +     + W   + 
Sbjct: 346 VWFSTEHGIFKKWVGTLKRKKVCKPEVIDRLVQALPRV----ENRFEPRTWVQHWMEKNG 401

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS--RFLGEQDGILDLETGQKVKPTKE 449
                  +           +  +  I  +  +  +        + +   E  Q  +   E
Sbjct: 402 VTFVYASDGFQIGGRMFPASEFLSQIEIESTNERTCISVRNLGNAVRLWEADQ-RRGIVE 460

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM---DYFTRCVGMALLGG-NKAQRFIH 505
            Y  K           ++EF+   +G  +  +++    +  + V   L G   K      
Sbjct: 461 QYREKLKFREDGRRGDAEEFIRATTGRLDPVDLVVVLHFIWQ-VKRKLFGKPVKDHLMPI 519

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
             G    GK+T +  +    G+     A+   +   R          L R  G   +   
Sbjct: 520 FVGKQRGGKTTAIKSLLQPLGDLVGFPADLQFLTDERQ------QFRLTRCYG---MFFD 570

Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
           E  + + + +  +K     + +  R+           + T     NK +           
Sbjct: 571 EMAKAERVASDVLKNRITAERIEYRVLGVQKLQTGTNNATFIGASNKQVK---------- 620

Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF----LKGVKAYISKGLDVDIP----- 676
             IV+         D +  ++      L    W     +  +  + S     + P     
Sbjct: 621 -EIVV---------DPTGMRRFYQLDCLPQMNWTALEQIDFLAMWTSVDEKAESPLLGQL 670

Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
                 ++E R   D+ + + +  C    + W ++ +L   Y E  + +   DR   S  
Sbjct: 671 AQVQARQDEIRAK-DSVEDFFERRC-AQRDQWIKATALYGHYVEDLKYQGR-DRMAFSLT 727

Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
                +K+         ++ +       + +
Sbjct: 728 KFGERMKELAGEENTGWKRSDGIKYRVTVKR 758


>gi|313896490|ref|ZP_07830041.1| primase C-terminal domain protein [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974914|gb|EFR40378.1| primase C-terminal domain protein [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 669

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 44/172 (25%), Gaps = 24/172 (13%)

Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE------ 275
                  WI V MA+  E    S    I   WS++   Y       KW+ F+        
Sbjct: 15  AEVDRATWISVGMALKEEGYPCS----IWDDWSQRDPRYHPGECEKKWEGFNGTTTPVKG 70

Query: 276 -EIGDTAKKRSTF----------TSLFYHHGK--LIPKGLLASRFSDAYNKAMFSIYKKG 322
             I   AK+R              ++ Y             A          +  ++   
Sbjct: 71  GTIVQLAKERGWMPCAEGAMAWDDTIEYDGNDGFNGFAPPDAWNPVQDLIDYLSLLFDVD 130

Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
             +       W K  +          D+    ++  L     D+     + +
Sbjct: 131 DRVGYVTGDVW-KDSEGKWLPSKGVYDRTAGELIASLKKHANDIGATVGDWK 181


>gi|123334569|ref|XP_001294121.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121871733|gb|EAX81191.1| hypothetical protein TVAG_338300 [Trichomonas vaginalis G3]
          Length = 193

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISNFNPRQIPYT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|265766808|ref|ZP_06094637.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253185|gb|EEZ24661.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 719

 Score = 54.5 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 92/284 (32%), Gaps = 35/284 (12%)

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
           +++   +       +  V D  E  + +    KS     N D+    +  + +  +   +
Sbjct: 323 EQVIDYLNKNYAFRRNTVLDRLEMCDLSQTEEKSFYAMRNKDFNSIFLNISRQGIAYPLN 382

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
                I S  S   +  + +            G      K  +I K   T   E +    
Sbjct: 383 SLKSVIDSDYSPEFNPFTHYF----------EGNARWDRKTDHIRKLADTIQAEDQEFWR 432

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                      E    +    V  AL  G   Q  + + G  G GKST +  +       
Sbjct: 433 -----------EGFRRWIVAMVASALRPGKANQEALVLHGAQGKGKSTWIRHL------- 474

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCM 587
                        R      AN   + L+ +R++I  E  E  +  + A++K++ G + +
Sbjct: 475 ----LPPELAEYYRNGMIDPANKDDLLLLSTRLLINMEEFEGVKTGDIAELKRIIGQENV 530

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
           T R  Y       P   +     N   F++  D    RR++VIP
Sbjct: 531 TIRKVYDTQAQLYPRRASFIGSTNNMQFLK--DYGGNRRFLVIP 572


>gi|123204151|ref|XP_001284443.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121845953|gb|EAX71513.1| hypothetical protein TVAG_488810 [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|293402156|ref|ZP_06646294.1| RecA-family ATPase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304263|gb|EFE45514.1| RecA-family ATPase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 735

 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWS-KQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
            +  W+ V MA+ HE   ++        WS K  S Y ++    KWDTF    I      
Sbjct: 20  DYQSWVNVGMALKHEGYSAAD----WDAWSMKDASRYHKDECFKKWDTFKGTGI------ 69

Query: 284 RSTFTSLFYHHGKLIPKGLLAS----RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN 339
             T  ++         + + +      + D  N     +            K W +  + 
Sbjct: 70  PVTGGTIVQMAMDRGWQPMRSGGHELGWDDVINCDSDDL--------VILDKGWIEGKEI 121

Query: 340 NVYI-WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR--QNV 396
              I W     K   + +  L    E+V  ++   + + K+  +   W  T  +   +  
Sbjct: 122 KEPIKWEPV--KELTTYLEILFDSDENVGYVTRSWDKDGKHMPTKGCWDRTAGQLIQELQ 179

Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLD 423
           + +    +     +  +   I  + LD
Sbjct: 180 KCDGDIGAVLGDYDPEAGAWIRFNPLD 206


>gi|237713494|ref|ZP_04543975.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407279|ref|ZP_06083827.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229446476|gb|EEO52267.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354087|gb|EEZ03179.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 400

 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 62/209 (29%), Gaps = 27/209 (12%)

Query: 457 GTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
               +  E    + + L+   F  + E+ MDY             K    + +     +G
Sbjct: 80  PIDHIPSEGEFPDIMKLIHHIFGEQYELGMDYMQLLYA---KPTQKLPILLLVSEERNTG 136

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           K+T +N +K  F +    N       Q                 G  ++++ E       
Sbjct: 137 KTTFLNFLKAVFEDNVTFNTNEDFRSQFN-----------ADWAGKLLIVVDEVLLCRRE 185

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR---RYIVI 630
           ++ ++K ++           G    E        +  N  LF    D    R   R  ++
Sbjct: 186 DSERLKNLSTAQTYKVEAK-GKDRQEVNFFAKFVLCSNNELFPVIIDTGETRYWVR-KIM 243

Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWF 659
           P +      D +F QKL          + 
Sbjct: 244 PLES----DDTNFLQKL-KAQIPAFLYYL 267


>gi|123230867|ref|XP_001286182.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121851226|gb|EAX73252.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196


>gi|68304223|ref|YP_249691.1| helicase/P143 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973052|gb|AAY84018.1| helicase/P143 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 1214

 Score = 54.5 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 53/463 (11%), Positives = 129/463 (27%), Gaps = 66/463 (14%)

Query: 212  AFLSCFGEEFYNGSHDEWIPVVMAVHHE--------TRGSSKGKEIARRWSKQGSTYDEE 263
            + L+    E ++  H E I + + + +          + S   ++ + +  K+       
Sbjct: 611  SALNDVFREIWHSDHSELITIGVYLRNTKLTDLMINLKCSECLEQKSAQQKKKCQCLMNI 670

Query: 264  NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
              N +        I    +  S   S+      L+    L  +      K       +  
Sbjct: 671  EINSR-----AFRIALIMELFSKTRSIIELSWSLLYSTGLYFKVLKDNLKWSLKKNHENI 725

Query: 324  FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
             LY          +++   I      KI            + + +   E    +   ++ 
Sbjct: 726  LLY----NNLEFFNEHRESIIDYLYSKIDR---------IDFIDNFITELSSPDDFIETL 772

Query: 384  RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS-DLLDSSSRFLGEQDGILDLETGQ 442
            +        R  + +N+   +   + +     S+   +  +S    +   +   +     
Sbjct: 773  KT--QVLSSRSCINQNNHDDNDDFADDNRINDSLKDVENEESKENLINFYNNYCNTWHIL 830

Query: 443  KVKPTKELYITKSTGTPFVEGEPSQEFLD--------------LVSGY---------FES 479
            K        +        +     + ++                V            F +
Sbjct: 831  KRWNLWWDKLIIRRPNDDLNSWLVRFYMRIFMTKLGLDEYNSTFVKQIVRGYLYFRGFTN 890

Query: 480  EEVMD-YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
               ++       G ++ +  +  +  I++ G  GSGKS+   L++Y        +++   
Sbjct: 891  FNYINSLVMMHFGASMGIPSDYEKCCIYLNGKPGSGKSSFFELLEYIVVVH-KHDSDKYT 949

Query: 538  IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNT 596
            + +    E               I  +   NE    + +  K         +    +   
Sbjct: 950  LSKKDTNEMEA---------DKMISQLYVINEMKVCDDSFFKSTADSTKSNSVCRKF-QG 999

Query: 597  YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
              +  A++   IV NK L + + D     R+ VI  D      
Sbjct: 1000 SQKYEANYKLLIVNNKPLHISDYDKGVRNRFAVIYTDHLFEEN 1042


>gi|302385773|ref|YP_003821595.1| Primase 2 [Clostridium saccharolyticum WM1]
 gi|302196401|gb|ADL03972.1| Primase 2 [Clostridium saccharolyticum WM1]
          Length = 735

 Score = 54.1 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 23/174 (13%)

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           ++   L+         S+ +WI V MA+ HE        ++  RWS     Y       K
Sbjct: 6   DLMEVLNHIDPS--ELSYQDWINVGMALQHE----GYSVDVWDRWSMNDRRYHAGECEKK 59

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328
           W  F             T  ++  +              +  +N  + +           
Sbjct: 60  WRGFHGAGT------PVTGGTIVQYARDQGWTPPYDPGTALDWNDTISAE-------GII 106

Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
             K W +       +           ++ +L ++ E   ++    +   K+ K 
Sbjct: 107 VDKNWVE----EREVTEPRQWDPAGELIKYLETLFEAGENVGYVVKSWKKDEKY 156


>gi|123315433|ref|XP_001292097.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121867138|gb|EAX79167.1| hypothetical protein TVAG_053870 [Trichomonas vaginalis G3]
          Length = 194

 Score = 54.1 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 57/203 (28%), Gaps = 23/203 (11%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISNFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQKGFIGGIKREKIE 757
            RT   N+K    +   K  K  
Sbjct: 169 KRTFLANVKNLFDVRNGKYTKKN 191


>gi|123373458|ref|XP_001297621.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121877854|gb|EAX84691.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.1 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    ++D+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123305703|ref|XP_001291277.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121865102|gb|EAX78347.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.1 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196


>gi|322691149|ref|YP_004220719.1| hypothetical protein BLLJ_0960 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456005|dbj|BAJ66627.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 847

 Score = 54.1 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 10/204 (4%)

Query: 471 DLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
            ++  +     +      R +    L  +  +     +G GG+GKSTL   +    G+Q 
Sbjct: 262 WILDQWTGQDTDSTLNLQRSLAAPFL-RSHPECAYVYQGPGGTGKSTLAKDLMEHLGDQA 320

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMT 588
                   + Q     A      L+  + +       T+   E +   +K +  G    +
Sbjct: 321 TT-MSLDLLAQPTAMSAENKMGDLMSHLLALSDDYDPTHGRFEKSLPNLKTLLTGLLPFS 379

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648
           AR    N+        T  I  N HL V +  +A  RR+        IA++       L 
Sbjct: 380 ARRQGENSVDGM-PQSTHLITTNYHLPV-SSSEAEQRRFAF----STIASQTTRARHYLP 433

Query: 649 TKYTLEAKKWFLKGVKAYISKGLD 672
            +       + L G   ++  G  
Sbjct: 434 FRRKHGFWPFMLVGAITWLKIGDR 457


>gi|123202812|ref|XP_001284175.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121845130|gb|EAX71245.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.1 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196


>gi|123277263|ref|XP_001289978.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121861821|gb|EAX77048.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.1 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123305782|ref|XP_001291285.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121865115|gb|EAX78355.1| hypothetical protein TVAG_200420 [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.1 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 59/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
                    S RT   N+K  
Sbjct: 179 SGYMAA---SKRTFLANVKSL 196


>gi|123153555|ref|XP_001277841.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121822832|gb|EAX64911.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 54.1 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|283769256|ref|ZP_06342160.1| primase C-terminal 2 (PriCT-2) [Bulleidia extructa W1219]
 gi|283104232|gb|EFC05611.1| primase C-terminal 2 (PriCT-2) [Bulleidia extructa W1219]
          Length = 764

 Score = 54.1 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 14/145 (9%)

Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262
           +    ++   L        N  + EW+ V MA+ +E        ++  RWS Q +  Y  
Sbjct: 2   ENRIEDLITALEYVDPRNLN--YQEWVNVGMALKYEGAY----VDVWDRWSSQDTERYHA 55

Query: 263 ENFNYKWDTFDFE-----EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317
                KW++F  +      I   A +    ++ +    K   + L      +   + +  
Sbjct: 56  GECEKKWNSFTNDGITGNTIFKMASENGYISADYQPIIKGGARELFDGETVEFNYRVIDK 115

Query: 318 IYKKGHFLYTADTKAWYKKDKNNVY 342
                  L   + K W   +    Y
Sbjct: 116 SMMDYEKL--PEVKNWNPVEDIRKY 138


>gi|123508218|ref|XP_001329584.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121912630|gb|EAY17449.1| hypothetical protein TVAG_493910 [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.1 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196


>gi|148261291|ref|YP_001235418.1| hypothetical protein Acry_2304 [Acidiphilium cryptum JF-5]
 gi|146402972|gb|ABQ31499.1| hypothetical protein Acry_2304 [Acidiphilium cryptum JF-5]
          Length = 158

 Score = 54.1 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 34/133 (25%), Gaps = 11/133 (8%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC----GFGFVCGVGEQ 63
           + A      G  + P+   DK P+              I  +         G   G    
Sbjct: 6   DTALDLAAAGRAVFPV-GNDKAPRCPRGHLAASTDPAVIRAMHRDFGFVLVGVATGERS- 63

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
            + A DID+K         +              +   + + F+        + +  +  
Sbjct: 64  GIAALDIDNKPGGLDWFEAN--RDKLPATRTHRTRSGGLHLWFK---HRAGLRSSVSAIA 118

Query: 124 GHLDILGCGQYFV 136
             +DI   G    
Sbjct: 119 PGIDIRADGGSCA 131


>gi|331004614|ref|ZP_08328079.1| hypothetical protein HMPREF0491_02941 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410483|gb|EGG89913.1| hypothetical protein HMPREF0491_02941 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 2541

 Score = 54.1 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/419 (8%), Positives = 94/419 (22%), Gaps = 36/419 (8%)

Query: 19  KLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76
             +P+    K  +      W       + + K    G GF  G         DID   ++
Sbjct: 35  TKMPIMPNGKPAKSNDRKTWNSYKDCIDALCKNQGTGLGFFLG---DGYIGIDIDKVSDE 91

Query: 77  T---------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127
                     A+   +    +     +   +   +         G  K         +L+
Sbjct: 92  IMEYSMDFNAASMTANFLRGISTYAEISPSKTG-LHFI------GKGKVPGERKRYKNLE 144

Query: 128 ILGCGQYFVAYNIH---PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
           I    ++F             K             +  P +   + +         ++  
Sbjct: 145 IYDRDRFFTITGNILKDKDRNKIVNINQELLPLYQKYMPKIDFGESKVGRINLSPSSLAD 204

Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITA-FLSCFGEEFYNGSHDEWIPVVMAVHHETRGS 243
                         N     Y+  ++   +   +   F + S  ++  +   +++     
Sbjct: 205 KSRFTQNDILNILFNRGYFNYSGEDLRQIYNGNYQNYFNSQSEADFFMLGRLLYYTADVE 264

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK----KRSTFTSLFYHHGKLIP 299
                +     K+   Y                +   +K     +           +   
Sbjct: 265 ESISFMENSGLKRNKWYKRRGSADYIHYIADRAMNGISKFYDWNKEKANITKNAKQEETE 324

Query: 300 KGLLASRFSDAYNKAMFSIYKK--GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357
                 +      + +  I                 + K   N Y +S        S   
Sbjct: 325 NKKKEGKMPRYSTEKISDILSHSLEEIRRDVSAYKDFLKTMGNNYKYSYMHQLSIYSTYK 384

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
              +  E      +  +   ++ K              + +       +Q++  G+  +
Sbjct: 385 RATACAE-----YDFWKKLGRSVKRGEKGIPILDLSMRLPKVKYVFDVSQTVSIGNKIN 438


>gi|123422789|ref|XP_001306246.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121887809|gb|EAX93316.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.1 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196


>gi|284990051|ref|YP_003408605.1| bifunctional DNA primase/polymerase [Geodermatophilus obscurus DSM
           43160]
 gi|284063296|gb|ADB74234.1| Bifunctional DNA primase/polymerase [Geodermatophilus obscurus DSM
           43160]
          Length = 400

 Score = 54.1 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 44/150 (29%), Gaps = 19/150 (12%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGDKRP---QRLGKWE---EQLLSSEKIDKL----PACGFG 55
           +   A      G ++IP+R G K          W    +     E+I K     P    G
Sbjct: 29  YLHNALFYAACGLRVIPVRPGTKASHSGLLGTGWSLEEKASNDPEQITKWWTDEPFANIG 88

Query: 56  FVCGVGEQPLYAFDIDSKDEK-----TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK 110
              G   Q     D D K  +      A   +     +    +VR          + + +
Sbjct: 89  IPQGRINQ-TGVIDHDRKHGERPRLQLAAHLRTVGVEVSRGIVVRT--PFGEHEWYLLPR 145

Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNI 140
            G +   T       +D+   G Y +A   
Sbjct: 146 GG-QSGTTCHPYVPGVDLQLDGTYVLAPPS 174


>gi|83645646|ref|YP_434081.1| hypothetical protein HCH_02881 [Hahella chejuensis KCTC 2396]
 gi|83633689|gb|ABC29656.1| uncharacterized protein conserved in bacteria [Hahella chejuensis
           KCTC 2396]
          Length = 823

 Score = 54.1 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 95/327 (29%), Gaps = 43/327 (13%)

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF----------- 486
           L     +    + +I    G P      S+ +           E++ +            
Sbjct: 465 LVFDPTMTADPKTHINIFEGLPHKPSPRSEFWRC--DSI---RELIKWLCNDDVDVVDWV 519

Query: 487 TRCVGMAL--LGGNKAQRFIHIRGVGGSGKST-LMNLIKYAFGNQYVINAEASDIMQNRP 543
            + +   +  +G       +    V GSGKS    ++ +  +G    +  +     Q   
Sbjct: 520 MKWLAYPIQNVGAKMDTALMFHSDVHGSGKSLLFADICRQLYGKYAAVLGQHQLESQ--- 576

Query: 544 PEAGKANPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                      RL+ +    ++S   +   +    IK M  G        + + + E+  
Sbjct: 577 -----YTDWRDRLLFAVFEEVLSRDQKYAHL--GTIKHMITGKTQRIEKKFVSGWEEANH 629

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
               F+      F   P D   RR++V+     +                   +  F   
Sbjct: 630 MNCIFLSNEFQPFPLEPSD---RRFLVVWPRATLPEHLQQLVSNEM--ENGGIEA-FYGY 683

Query: 663 VKAYISKGLDVDIPEVCLKAKEEE----RQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
           + AY +KG +     +    K         GT+ +     D       +   +  L + Y
Sbjct: 684 LLAYNTKGFNEHTKPLMTDDKARLIHFGLSGTELFYQAWRDGLLEAPYMSCITTDLYEVY 743

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQK 745
             +  +E     + ++    +L L  K
Sbjct: 744 KRWCSREGE---RSLTQTKFSLLLSVK 767


>gi|124001159|ref|XP_001277000.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121918986|gb|EAY23752.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.1 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196


>gi|160887901|ref|ZP_02068904.1| hypothetical protein BACUNI_00305 [Bacteroides uniformis ATCC 8492]
 gi|218131379|ref|ZP_03460183.1| hypothetical protein BACEGG_02994 [Bacteroides eggerthii DSM 20697]
 gi|237717336|ref|ZP_04547817.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|237724860|ref|ZP_04555341.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|262406101|ref|ZP_06082651.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|270294842|ref|ZP_06201043.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|294778044|ref|ZP_06743478.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
 gi|156862587|gb|EDO56018.1| hypothetical protein BACUNI_00305 [Bacteroides uniformis ATCC 8492]
 gi|217986311|gb|EEC52648.1| hypothetical protein BACEGG_02994 [Bacteroides eggerthii DSM 20697]
 gi|229436598|gb|EEO46675.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229443319|gb|EEO49110.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356976|gb|EEZ06066.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|270274089|gb|EFA19950.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|294448102|gb|EFG16668.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
          Length = 396

 Score = 54.1 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 87/308 (28%), Gaps = 51/308 (16%)

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
              + +   ++ +  +P  N    K    W N      +       K+   ++     F 
Sbjct: 4   EEYMRVGTTLYKVVNQPCANGGYEKKRVVWNN------STLRQDYGKNYLATVPKYDGFC 57

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
              + L+      G  +        + ++   +                      L+   
Sbjct: 58  TVPNHLNYQKEIEGFLN------LYEPIEHKPQQGDFS-------------HIQSLMRHI 98

Query: 477 FESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
           F  + E+ MDY        L    K    + +     +GKST +N +K  F    V    
Sbjct: 99  FGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF-ENNVTFNT 154

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
             D       +            G  ++++ E   N   ++ ++K ++           G
Sbjct: 155 NEDFRSQFNSDWA----------GKLLIVVDEVLLNRREDSERLKNLSTTFTYKVEAK-G 203

Query: 595 NTYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKY 651
              +E        +  N      + +  +  +W R  ++P        D +F QKL    
Sbjct: 204 KDRTEIAFFAKFVLCSNNEYLPILIDAGETRYWVR-KIMPLQS----DDTNFLQKL-KAE 257

Query: 652 TLEAKKWF 659
                 + 
Sbjct: 258 IPAFLYFL 265


>gi|123497113|ref|XP_001327106.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121910031|gb|EAY14883.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.1 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196


>gi|123177581|ref|XP_001280125.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121831445|gb|EAX67195.1| hypothetical protein TVAG_590280 [Trichomonas vaginalis G3]
          Length = 211

 Score = 54.1 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196


>gi|322382459|ref|ZP_08056354.1| hypothetical protein PL1_2398 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153572|gb|EFX45961.1| hypothetical protein PL1_2398 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 775

 Score = 54.1 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 36/287 (12%)

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
            G K    + + G  G+GKST+   I+      +  + +  D  +               
Sbjct: 513 PGCKFDYMLVLVGAQGAGKSTI---IQKLAMRWFSDSLKTFDTKEAGEHLQSAWIFEFGE 569

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L G     +            +IKQ         R+ Y    ++ P     F   N   F
Sbjct: 570 LAGMTKAEVD-----------EIKQFITKRSDKYRVAYDRVITDFPRKCVFFGSTNNWDF 618

Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
           +++P     RR+  +        R  +  + L      +     L+  +     G  + +
Sbjct: 619 LKDPTG--NRRFWPV--SVKPERRTKNVFEDLTEHEIGQIWAEALQAYRR----GERITL 670

Query: 676 PEVCLKA---KEEERQGTDT----YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
                K     +E     D      Q W+D      ++ W E      +Y E        
Sbjct: 671 SPEVEKEAPGIQESHMEEDPRFGIIQEWLD---SPAQDEWAEEP----TYRERVCATQIL 723

Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
                  +  T   + K  +  ++R    +E K +  I G  ++  F
Sbjct: 724 TECLGHRKGTTRPWESKEIVNIMRRMPGWEEAKGRIRIPGYGIQTTF 770


>gi|301165045|emb|CBW24613.1| conserved hypothetical protein [Bacteroides fragilis 638R]
          Length = 396

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 87/308 (28%), Gaps = 51/308 (16%)

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
              + +   ++ +  +P  N    K    W N      +       K+   ++     F 
Sbjct: 4   EEYMRVGTTLYKVVNQPCANGGYEKKRVVWNN------STLRQDYGKNYLATVPKYDGFC 57

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
              + L+      G  +        + ++   +                      L+   
Sbjct: 58  TVPNHLNYQKEIEGFLN------LYEPIEHKPQQGDFS-------------HIQSLMRHI 98

Query: 477 FESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
           F  + E+ MDY        L    K    + +     +GKST +N +K  F    V    
Sbjct: 99  FGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF-ENNVTFNT 154

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
             D       +            G  ++++ E   N   ++ ++K ++           G
Sbjct: 155 NEDFRSQFNSDWA----------GKLLIVVDEVLLNRREDSERLKNLSTTFTYKVEAK-G 203

Query: 595 NTYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKY 651
              +E        +  N      + +  +  +W R  ++P        D +F QKL    
Sbjct: 204 KDRTEIAFFAKFVLCSNNEYLPILIDVGETRYWVR-KIMPLQS----DDTNFLQKL-KAE 257

Query: 652 TLEAKKWF 659
                 + 
Sbjct: 258 IPAFLYFL 265


>gi|123327782|ref|XP_001293717.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121870864|gb|EAX80787.1| hypothetical protein TVAG_356970 [Trichomonas vaginalis G3]
          Length = 211

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196


>gi|123229254|ref|XP_001286066.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121850866|gb|EAX73136.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196


>gi|123300596|ref|XP_001291020.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121864457|gb|EAX78090.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    + +  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLKSDALKSLITDKVGVVERKYKDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196


>gi|224541910|ref|ZP_03682449.1| hypothetical protein CATMIT_01083 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525144|gb|EEF94249.1| hypothetical protein CATMIT_01083 [Catenibacterium mitsuokai DSM
           15897]
          Length = 748

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 9/122 (7%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKK 283
           S+ EW  V MA+ HE   +S        WS Q    Y       KW++F+ E  GD    
Sbjct: 19  SYQEWTNVGMALKHEGYEASD----WDSWSSQDSERYKRGECFTKWNSFN-ETAGDIVTG 73

Query: 284 RSTFTSLF---YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
            + F       +   K I        + D     +         L+      W   ++  
Sbjct: 74  GTIFDYAKKGGFVPPKKIDPNEGVLDWDDEIGNIIDKDSIDSIELHEPSDSIWNPANELI 133

Query: 341 VY 342
            Y
Sbjct: 134 RY 135


>gi|298385938|ref|ZP_06995495.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298261166|gb|EFI04033.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 405

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 75/260 (28%), Gaps = 20/260 (7%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEE 481
           D+    +   +G   + +    +     +         V  E    +   L+   F  EE
Sbjct: 52  DNIPPIIKY-NGFCTVPSHTNYQKEIAGFYNLYEPIDHVPEEGDFPDIEKLLHHIF--EE 108

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGS-GKSTLMNLIKYAFGNQYVINAEASDIMQ 540
             +     + +      +    + +     + GK+T +N +K  F +    N       Q
Sbjct: 109 QYELGLDYMQLLYTQPTQKLPILLLVSEERNTGKTTFLNFLKSIFQDNATFNTNEDFRSQ 168

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
                            G  ++++ E   +   ++ ++K ++           G    E 
Sbjct: 169 FN-----------ADWAGKLLIVVDEVLLSRREDSERLKNLSTAQTYKVEAK-GKDRQEV 216

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
                  +  N  L+    D    R    +   +P+ + D +F  KL  +          
Sbjct: 217 NFFAKFVLCSNNELYPVIIDPGENR--YWVRKIRPLESDDTNFLLKL-KEQIPAFLYHLQ 273

Query: 661 KGVKAYISKGLDVDIPEVCL 680
               + I +G     P +  
Sbjct: 274 HRPLSTIKEGRMWFNPALIR 293


>gi|123446973|ref|XP_001312232.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121894072|gb|EAX99302.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    ++D+     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFVDE----TDFVSLDEKSLYNEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123145716|ref|XP_001277556.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121821724|gb|EAX64626.1| hypothetical protein TVAG_602970 [Trichomonas vaginalis G3]
          Length = 211

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196


>gi|123418305|ref|XP_001305293.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121886804|gb|EAX92363.1| hypothetical protein TVAG_215890 [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL   Y +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|92117681|ref|YP_577410.1| virulence-associated E [Nitrobacter hamburgensis X14]
 gi|91800575|gb|ABE62950.1| virulence-associated E [Nitrobacter hamburgensis X14]
          Length = 695

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 86/673 (12%), Positives = 161/673 (23%), Gaps = 117/673 (17%)

Query: 17  GFKLIPLRLGDKRPQRLGK--WEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDI 70
           G  L P+  G K P  +    + +      +        P C F  V G     L   DI
Sbjct: 16  GAALAPIPHGAKNPLGIVGSVYLDCSKDPAQWRGWRATHPNCNFVLVAGP--SRLIILDI 73

Query: 71  DSKDE--KTANTFKDTFEILHGTPI----VRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124
           D K+     A      +      PI    VR           R+      +  T      
Sbjct: 74  DVKELGVDRAIHLYRWWFESRRLPILMPQVRTP-SGGFHTYVRVPDGVDLEDLTAAQLVP 132

Query: 125 HLDILGCGQYFVAY----NIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
             +  G  +  V       I       Y           +       E  E L +  +  
Sbjct: 133 ACE--GAKKAIVETKIGNGITNAVGSYYDGRDGGPAGYYKRIT--PYEPHECLPQLLEYY 188

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
              +V    +   ++              I   L C           +      A+    
Sbjct: 189 KRKVVATAATPESTRAAEELLP--TLPAHIRRKLDCEDATGDRS--ADIARCTTALIGHG 244

Query: 241 RGSSKGKEIARRWS------KQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH 294
              ++  ++   WS       +    D         +   +  G+         S     
Sbjct: 245 CSDAEIFDL--IWSHPLGEKAREKKDDGHWLRKDITSMRSKGFGERKPVDW---SGVAMT 299

Query: 295 GKLIPKGLLASRFSD----AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
           G      +    +        N  +           TA + +    ++            
Sbjct: 300 GAKTGDIVSRPDWHHQCIADGNGKIIPNVANAIVAVTAASGSHIGFNE------------ 347

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
                  +L      + D         + ++  ++  +       + ++    +      
Sbjct: 348 -MECAPFWLAPYNRAIRD--------EEVTEIQKWIQHNG--IPRIGKDIVHDAVRSVAV 396

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
             S   +  D L++                G             +T TP+  G       
Sbjct: 397 KNSFHPVR-DYLNALRW------------DGVPRAGNWLSTYLGATRTPYTNG------- 436

Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
             +   F    V   F          G KA   + + G  G  KS   +  +   G  + 
Sbjct: 437 --IGQMFLIAMVARAFQ--------PGCKADYMLILEGKQGLMKS---SACRALAGQWFS 483

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
                                +   L G  ++  +E +         +K          R
Sbjct: 484 DQLP-----------DIGTKDAAQHLRGKWLIEAAEMHALSRAETTALKAFVTRQEERYR 532

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-----DKPIANRDASFAQ 645
             YG      P         NK +++++      RR+  +       D+  A+RD  FA+
Sbjct: 533 PPYGRLEVVEPRQCVFIGTTNKAVYLKDETGG--RRFWPVKCGTIAIDRLAADRDQLFAE 590

Query: 646 KLETKYTLEAKKW 658
            +   Y   A  W
Sbjct: 591 AVHL-YRSGAAWW 602


>gi|123316920|ref|XP_001292494.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121868086|gb|EAX79564.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S   +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSTENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123286063|ref|XP_001290255.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121862495|gb|EAX77325.1| hypothetical protein TVAG_032380 [Trichomonas vaginalis G3]
          Length = 211

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T              
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|325128008|gb|EGC50906.1| hypothetical protein NMXN1568_1216 [Neisseria meningitidis N1568]
          Length = 815

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 68/514 (13%), Positives = 121/514 (23%), Gaps = 108/514 (21%)

Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342
            +    + +      +      +R    Y   +    K        D    +     +  
Sbjct: 320 GKDVVDAWYEWGRAPVLTMYEINRLKKDYA--LIQAVKDDDT---QDMMERFIYLDGSAS 374

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
           IW   L ++       L    +        P    K      F          +      
Sbjct: 375 IWDNKLWRVVPEKAARLSMTPDGFKIWVNSPSRIVKRFDRLVFEPGRVLSDDYINIFRGM 434

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
               +          T+  L                                     +  
Sbjct: 435 PIEPKFPIPKEDMPETNYEL-------------------------------------YRL 457

Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGV-GGSGKSTLMN 519
               +  L+L++       + ++Y    +   L   G K    + + G   G+GKS    
Sbjct: 458 FPEIKPILNLINHLCNGDYQQVEYILNWLAYPLQNVGAKMTTAVVMHGHIHGAGKSFFFE 517

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS--ETNENDEINAAK 577
            I      +Y       D+  N                G    I     TN+        
Sbjct: 518 EIVKPMYGEYGATYGQEDLESNYTANRS----------GKMFGIFEEVYTNQQKYNKTGS 567

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPI 636
            K M  G  M     + + Y E+      F+    H   +   D    RRY V+  +K +
Sbjct: 568 QKHMITGKTMRVERKFQDAYEEANHMNCVFLSNESHPFKIEEND----RRYFVVWPEKKL 623

Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG--------------------LDVDIP 676
             +             +     FL     Y++ G                     D + P
Sbjct: 624 DKKLRDEVLDCIGNDGVRLFYSFLLCWNFYLTYGQQGAENEKGYEVIKLEEPVRFDPNTP 683

Query: 677 EVCLKAKE--------EERQGTDTYQAW----IDD---CCDIGENLWEESHSLAKSYSEY 721
                AK+          +     Y  W    I D   CC I ++LW         Y E+
Sbjct: 684 PPMTAAKQNVISYGRYAWQT---FYSEWAGGGIKDLPFCCCITDDLWL-------VYKEW 733

Query: 722 REQELNYDR-KRISTRTVTLNLKQKGFIGGIKRE 754
             Q    +  K    + +   + +       K +
Sbjct: 734 CRQNGERETGKTKFLQHIAEKMPRARRWWRTKNK 767


>gi|294788388|ref|ZP_06753631.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453]
 gi|294483819|gb|EFG31503.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453]
          Length = 906

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 57/526 (10%), Positives = 125/526 (23%), Gaps = 76/526 (14%)

Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208
                         PL  +  ++ +    +E+     +     IP               
Sbjct: 259 EKEAGVKETDKPLLPLHEQGGMKAMLGIEKELLKYGNQTAIVAIPEPDVWTAGYDIA--D 316

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
            IT                  +     +   +        +               F   
Sbjct: 317 MITDLEPLANARELVDEALTRVSPEPTLQGVSHSVKNAPNVQTGGVGDDDNVYNSYFAEL 376

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328
              F   E   +A  +   T+  Y   K+     +   + +  +K + + Y+        
Sbjct: 377 LAHFALVEGKKSAVDKRNGTTYSYSALKVRFNKDVVDSWFNMPDKPLMTQYEIKRLKDIE 436

Query: 329 DTKAW------------YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
           + K              Y     +  +W   L ++       L                 
Sbjct: 437 ELKQRSNDTEILETMERYIYLDGSTSVWDKQLWRMIEQGAAKLAM--------------- 481

Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI- 435
                S + W N+  R+    +N                      LD    ++    G+ 
Sbjct: 482 ---GDSFKIWVNSPNRKVIPIDNIVFNPM---------------TLDLGDDYINLFRGLP 523

Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM-DYFTRCVGMAL 494
           +        +   + +    +  P            LV     ++ ++  +    +   L
Sbjct: 524 VTASYPIPREEMPQNWGEVISLFP-----ECMNIFRLVKHLCNNDWLITQFVMNWLAYPL 578

Query: 495 LG-GNKAQRFIHIRGV-GGSGKSTLM-NLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
              G K    +   G   G+GKS L  +++   +G       +           +     
Sbjct: 579 QHLGAKLACSLVFHGDVQGAGKSWLFDDIMGQIYGEHGGHYGQEDLETIYTANRS----- 633

Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
              +L G+   + +   +    N+ KIK M           + +   E+      F    
Sbjct: 634 --AKLYGAFEEVFNNQQKYS--NSGKIKNMVTRKTHRIERKFVDAMDEANRINCVFTSNE 689

Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
              +  + +D   RR  V+       +        L+     E   
Sbjct: 690 AQPYKLDEND---RRACVV-------SPQKRLPDDLKQALEEEIAN 725


>gi|123185483|ref|XP_001281331.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121835789|gb|EAX68401.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKSL 179


>gi|262383670|ref|ZP_06076806.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294568|gb|EEY82500.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 395

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 71/236 (30%), Gaps = 25/236 (10%)

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDY 485
           + + DG   +      KP    ++           E        LV   F  +  + MDY
Sbjct: 51  IPKYDGFCTVPDHVGYKPVVGKFLNLYEPISHRPQEGDFPCIRSLVEHIFGEQYGLGMDY 110

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
                   L    K    + +     +GKST +N +K  F      N    +  ++   +
Sbjct: 111 LQLLY---LYPIQKLPILLLVSEERNTGKSTFLNFLKAIF-----QNNVTFNTNEDFRSQ 162

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN-TYSESPASF 604
                       G  ++++ E   N   ++ ++K ++            +       A F
Sbjct: 163 FNS------DWAGKLLIMVDEVLLNRREDSERLKNLSTTLSYKVEAKGKDRDEIGFFAKF 216

Query: 605 TPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
                      + +  +  +W R  ++P    + N D  F QKL          + 
Sbjct: 217 VLCSNNEHLPVIIDAGETRYWVR-KIVP----LQNDDTDFLQKL-KAEIPAFLHFL 266


>gi|237735523|ref|ZP_04566004.1| recA-family ATPase [Mollicutes bacterium D7]
 gi|229381268|gb|EEO31359.1| recA-family ATPase [Coprobacillus sp. D7]
          Length = 738

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 34/184 (18%)

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST-YDEENFNY 267
           ++   L+       N  + EW  V MA+ +E    S+       WS++ S  Y ++    
Sbjct: 6   DLIEILNYIDPSRLN--YQEWCCVGMALKYEGYSVSE----WDSWSRRDSKRYHDKECLK 59

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS------RFSDAYNKAMFSIYKK 321
           KWDTF    +        T  ++  +         +         + D  N       K 
Sbjct: 60  KWDTFTGSGV--------TGGTIVQYAKDQGWTPPVKDGAGHELDWDDVINA------KD 105

Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
              +     + W +  +             +A ++ +L ++ +   +++   +      K
Sbjct: 106 EKVIVD---RNWLEVKEVREPRG----WDPSAELITYLETLFDSTENVAYVTKSWFNEEK 158

Query: 382 SPRF 385
               
Sbjct: 159 QKHL 162


>gi|289937678|ref|YP_003482280.1| hypothetical protein Nmag_4210 [Natrialba magadii ATCC 43099]
 gi|289533369|gb|ADD07718.1| conserved hypothetical protein [Natrialba magadii ATCC 43099]
          Length = 353

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 60/268 (22%), Gaps = 57/268 (21%)

Query: 38  EQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID-SKDEKTANTF---KDTFEILHGTPI 93
               + E      A G GFV      PL   D+D  +D +            E L     
Sbjct: 16  TNDAALEYAATGAADGIGFVF-TATVPLVGVDVDDCRDPEAGEPLESALSIIEQLDSFTE 74

Query: 94  VRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP 153
           V        ++                +  G +++    ++F     H            
Sbjct: 75  VSPSGTGYHVLL-------EGDLPDGRNRHGSIEMYDQARFFTVTADHVDG--------- 118

Query: 154 PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213
                   TP    E  + L    +E              +    +++ +  T       
Sbjct: 119 --------TPTSINERQDALEAVHEEFVAEDDTTNDINSTTGDRRDDSGQSQTLELEDEE 170

Query: 214 LSCFGEEFYNGS------------HDEWIPVVMAV---------------HHETRGSSKG 246
           L        NG             +D      MA+                   R S   
Sbjct: 171 LLEKARSAGNGDKFDRLWRGNTSGYDSQSEADMALCCLLAFWTGGNRLQMDRLFRQSGLI 230

Query: 247 KEIARRW-SKQGSTYDEENFNYKWDTFD 273
           +          GSTY E+         D
Sbjct: 231 RGKWDDVHHADGSTYGEKTLERAIAATD 258


>gi|123365708|ref|XP_001296382.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121875931|gb|EAX83452.1| hypothetical protein TVAG_318450 [Trichomonas vaginalis G3]
          Length = 211

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|123315456|ref|XP_001292104.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121867154|gb|EAX79174.1| hypothetical protein TVAG_544490 [Trichomonas vaginalis G3]
          Length = 211

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNSVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196


>gi|123299004|ref|XP_001290934.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121864246|gb|EAX78004.1| hypothetical protein TVAG_285130 [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|315122492|ref|YP_004062981.1| P4 family phage/plasmid primase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495894|gb|ADR52493.1| P4 family phage/plasmid primase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 75

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/60 (73%), Positives = 48/60 (80%)

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
           +GE   EES  LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG + EK   + + 
Sbjct: 6   VGEGFLEESSILAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGREWEKSNSDRRK 65


>gi|319639756|ref|ZP_07994486.1| hypothetical protein HMPREF9011_00083 [Bacteroides sp. 3_1_40A]
 gi|317388573|gb|EFV69422.1| hypothetical protein HMPREF9011_00083 [Bacteroides sp. 3_1_40A]
          Length = 396

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 87/308 (28%), Gaps = 51/308 (16%)

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
              + +   ++ +  +P  N    K    W N      +       K+   ++     F 
Sbjct: 4   EEYMRVGTTLYKVVNQPCANGGYEKKRVVWNN------STLRQDYGKNYLATVPKYDGFC 57

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
              + L+      G  +        + ++                +         L+   
Sbjct: 58  TVPNHLNYQKEIEGFLN------LYEPIEHKP-------------QQGEFSHIQSLMRHI 98

Query: 477 FESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
           F  + E+ MDY        L    K    + +     +GKST +N +K  F    V    
Sbjct: 99  FGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF-ENNVTFNT 154

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
             D       +            G  ++++ E   N   ++ ++K ++           G
Sbjct: 155 NEDFRSQFNSDWA----------GKLLIVVDEVLLNRREDSERLKNLSTTFTYKVEAK-G 203

Query: 595 NTYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKY 651
              +E        +  N      + +  +  +W R  ++P        D +F QKL    
Sbjct: 204 KDRTEIAFFAKFVLCSNNEYLPILIDAGETRYWVR-KIMPLQS----DDTNFLQKL-KAE 257

Query: 652 TLEAKKWF 659
                 + 
Sbjct: 258 IPAFLYFL 265


>gi|191637875|ref|YP_001987041.1| Orf271 gp (Gp271) [Lactobacillus casei BL23]
 gi|190712177|emb|CAQ66183.1| Orf271 gp (Gp271) [Lactobacillus casei BL23]
 gi|327381944|gb|AEA53420.1| Phage protein [Lactobacillus casei LC2W]
 gi|327385104|gb|AEA56578.1| Phage protein [Lactobacillus casei BD-II]
          Length = 265

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 79/269 (29%), Gaps = 24/269 (8%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDKL----PACGFGFVCGVGEQ 63
            A      GF ++P+    K+P    ++ ++   ++++I +     P             
Sbjct: 7   YAVAYAEKGFYVLPMHR--KKPMI--EFADRPAMTADEIKRFWTTHPQAQIALRTVHH-- 60

Query: 64  PLYAFDID-SKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
             +  DID   D        +TFE        + +      + I +        +     
Sbjct: 61  --FVVDIDQHDDGADGFLSFNTFEHPEYFEDTLSQTTAGGGMQIFYLKPDG--VEIPQII 116

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
                +DI      Y +      +  + Y W       +  D  L++E   +   +   +
Sbjct: 117 GWLPGVDIKAHTNNYTMVAPSRTEKGQ-YKWDCKHSIVEASD-GLIAELTKQKFTESRYQ 174

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239
                   KKS          N    T     A  +  G   +    D  +  V+A+  +
Sbjct: 175 PEALSAPVKKSATAELFEQVVNGLGETGGRNNALAAFVGGLLF---RDVSVDAVLALAKQ 231

Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYK 268
              ++      + + +   +  ++    +
Sbjct: 232 ANDNTPKSLDGKEFDRTFESMVKKEIRRR 260


>gi|167462159|ref|ZP_02327248.1| RecA-family ATPase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 768

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 24/220 (10%)

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST-YDEENFNY 267
           ++ + L      + N  + EWI V MA+ +E   +S        WSK+ ST Y       
Sbjct: 24  DLVSLLEYIDPSYLN--YQEWINVGMALKYEGYTASD----WDDWSKRDSTRYHPGECFK 77

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327
           KW TF+            T  ++             A R     +   ++    G   Y 
Sbjct: 78  KWTTFEGTGT------PITGATITQMAKDNGWMPRSADREDRELD---WNDEIAGD--YV 126

Query: 328 ADTKAWYK-KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN-KNSKSPRF 385
              K W + K+ +   +W+    +   + +  L    E+V  + +  +++  K   +   
Sbjct: 127 VVDKNWIEGKEIHEPAVWNPV--QQLTTYLEILFEASENVGYVVDTWQNDEGKYLPTKGA 184

Query: 386 WFNTDYRRQNVEE--NSKAKSTAQSLEAGSIFSITSDLLD 423
           W  +      +    N    S        +   I  + LD
Sbjct: 185 WDRSAGELIQLLNQCNGDIGSVLGDYNPEAGAWIRFNPLD 224


>gi|330818031|ref|YP_004361736.1| primase 2 [Burkholderia gladioli BSR3]
 gi|327370424|gb|AEA61780.1| primase 2 [Burkholderia gladioli BSR3]
          Length = 953

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 17  DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68


>gi|238028381|ref|YP_002912612.1| inner membrane protein [Burkholderia glumae BGR1]
 gi|237877575|gb|ACR29908.1| Inner membrane protein [Burkholderia glumae BGR1]
          Length = 958

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 22  DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 73


>gi|170733820|ref|YP_001765767.1| primase 2 [Burkholderia cenocepacia MC0-3]
 gi|169817062|gb|ACA91645.1| Primase 2 [Burkholderia cenocepacia MC0-3]
          Length = 953

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 17  DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68


>gi|254190716|ref|ZP_04897223.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|157938391|gb|EDO94061.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
           52237]
          Length = 922

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 17  DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68


>gi|254253429|ref|ZP_04946747.1| Superfamily II helicase [Burkholderia dolosa AUO158]
 gi|124896038|gb|EAY69918.1| Superfamily II helicase [Burkholderia dolosa AUO158]
          Length = 958

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 22  DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 73


>gi|76809069|ref|YP_332699.1| inner membrane protein [Burkholderia pseudomallei 1710b]
 gi|237811419|ref|YP_002895870.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
 gi|254260840|ref|ZP_04951894.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
 gi|76578522|gb|ABA47997.1| inner membrane protein [Burkholderia pseudomallei 1710b]
 gi|237505486|gb|ACQ97804.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
 gi|254219529|gb|EET08913.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
          Length = 953

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 17  DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68


>gi|153835208|ref|ZP_01987875.1| primase C 2 (PriCT-2) family [Vibrio harveyi HY01]
 gi|148868318|gb|EDL67446.1| primase C 2 (PriCT-2) family [Vibrio harveyi HY01]
          Length = 1209

 Score = 53.7 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259
            N  Q    E    LS    +     +  W  +  A+  E    +  ++I  RWS  G++
Sbjct: 3   ANYIQLELYEAEEALSHISPDLP---YKRWSKIGRALVSEY--GNDARDIFERWSATGNS 57

Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIY 319
           YD+  F   W  F   +       R++F S  Y   +          +S+   + +F+ Y
Sbjct: 58  YDKRGFKSWWKNFQRVK-------RTSFGSFIYEAMEAGW-KPKKKDYSEEERQKLFADY 109

Query: 320 KK-----GHFLYTADTKAWYKKDKNN 340
           +K           A+ + W +  K  
Sbjct: 110 EKRKKAAERRRIQAEQEQWNELKKEE 135


>gi|123194362|ref|XP_001283044.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121841640|gb|EAX70114.1| hypothetical protein TVAG_106280 [Trichomonas vaginalis G3]
          Length = 211

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKGLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196


>gi|123159659|ref|XP_001278860.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123253222|ref|XP_001289038.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121826812|gb|EAX65930.1| hypothetical protein TVAG_153960 [Trichomonas vaginalis G3]
 gi|121859376|gb|EAX76108.1| hypothetical protein TVAG_324110 [Trichomonas vaginalis G3]
          Length = 211

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL   Y +
Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196


>gi|237813308|ref|YP_002897759.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
 gi|237503709|gb|ACQ96027.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
          Length = 949

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
              D W  V MAV  E     +G  +   WS+   +Y+ ++    W +F   +I      
Sbjct: 17  DDRDTWRQVGMAVKAEF--GEEGFSLWSEWSQGAQSYNAKDARDVWKSFKGGKITINTLY 74

Query: 284 R 284
            
Sbjct: 75  H 75


>gi|167825274|ref|ZP_02456745.1| hypothetical protein Bpseu9_16513 [Burkholderia pseudomallei 9]
 gi|226197848|ref|ZP_03793422.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei Pakistan 9]
 gi|225930036|gb|EEH26049.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei Pakistan 9]
          Length = 949

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
              D W  V MAV  E     +G  +   WS+   +Y+ ++    W +F   +I      
Sbjct: 17  DDRDTWRQVGMAVKAEF--GEEGFSLWSEWSQGAQSYNAKDARDVWKSFKGGKITINTLY 74

Query: 284 R 284
            
Sbjct: 75  H 75


>gi|123187796|ref|XP_001281697.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121837036|gb|EAX68767.1| hypothetical protein TVAG_510970 [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|300215226|gb|ADJ79642.1| Putative uncharacterized protein [Lactobacillus salivarius CECT
           5713]
          Length = 209

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 33/135 (24%), Gaps = 16/135 (11%)

Query: 50  PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFR 107
           P    G         L   DID+ +       +          +  V   +   +   +R
Sbjct: 4   PNINIGLNLAK--SNLIVVDIDNHNNDLQAPLQSLSNLGYNLPSDYVERTKSGGLHFYYR 61

Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
            +      +KT       +D+L    + V            T     +   + D P    
Sbjct: 62  CSDGIPATRKTKFID--GVDLLSD--FVVTSPS--------TNYKILNGATLNDIPQTPN 109

Query: 168 EDVEYLFKFFQEITV 182
             ++ L         
Sbjct: 110 WIIKALDNRVMPTDK 124


>gi|257080671|ref|ZP_05575032.1| RecA-family ATPase [Enterococcus faecalis E1Sol]
 gi|256988701|gb|EEU76003.1| RecA-family ATPase [Enterococcus faecalis E1Sol]
          Length = 743

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 58/197 (29%), Gaps = 22/197 (11%)

Query: 198 TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG 257
                 +    E+  ++           + EW+ V MA+  E   +        +WS+  
Sbjct: 2   KTQMENKLDLIELLEYIDPASL-----GYQEWVNVGMALKQEGYTAVD----WDQWSQSD 52

Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317
           S Y       KW++F   +   +    +T T L   +G   P           +N  +  
Sbjct: 53  SRYHSGECFKKWESF---QGTSSPITGATITQLAKENGWTSPFKSGDGGHELDWNDTL-- 107

Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377
             +K         + W +       I      +    I+ +L ++ E    ++   +   
Sbjct: 108 --QKDDL--VIIDRNWIE----GKEIQEPKKWEPAKEIIRYLETLFEPSETVAYNVQSWQ 159

Query: 378 KNSKSPRFWFNTDYRRQ 394
                 +      Y R 
Sbjct: 160 DEDGKWKPSNKGAYDRT 176


>gi|123203525|ref|XP_001284351.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121845667|gb|EAX71421.1| hypothetical protein TVAG_573480 [Trichomonas vaginalis G3]
          Length = 187

 Score = 53.4 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 54/188 (28%), Gaps = 23/188 (12%)

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
           +   +    +N+  +K +           Y +       +    +  N         D  
Sbjct: 2   LQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNSVPMKLESSD-- 59

Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKA 682
            RRY+V+        +D  +   L    T                   +   IP    + 
Sbjct: 60  -RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT--EE 115

Query: 683 KEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737
           ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S RT
Sbjct: 116 RQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAASKRT 164

Query: 738 VTLNLKQK 745
              N+K  
Sbjct: 165 FLANVKSL 172


>gi|254804775|ref|YP_003082996.1| putative bacteriophage P4 DNA primase-like protein [Neisseria
           meningitidis alpha14]
 gi|254668317|emb|CBA05290.1| putative bacteriophage P4 DNA primase-like protein [Neisseria
           meningitidis alpha14]
          Length = 867

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 80/354 (22%), Gaps = 62/354 (17%)

Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342
            +    + +      +      +R    Y   +    K        D    +     +  
Sbjct: 453 GKDVVDAWYEWGRAPVLTMYEINRLKKDYA--LIQAVKDDDT---QDMMERFIYLDGSAS 507

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
           IW   L ++       L    +        P    K      F          +      
Sbjct: 508 IWDNKLWRVVPEKAARLSMTPDGFKIWVNSPSRIVKRFDRLVFEPGRVLSDDYINIFRGM 567

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
               +          T+  L                                     +  
Sbjct: 568 PIEPKFPIPKEDMPETNYEL-------------------------------------YRL 590

Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGV-GGSGKSTLMN 519
               +  L+L++       + ++Y    +   L   G K    + + G   G+GKS    
Sbjct: 591 FPEIKPILNLINHLCNGDYQQVEYILNWLAYPLQNVGAKMTTAVVMHGHIHGAGKSFFFE 650

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS--ETNENDEINAAK 577
            I      +Y       D+  N                G    I     TN+        
Sbjct: 651 EIVKPMYGEYGATYGQEDLESNYTANRS----------GKMFGIFEEVYTNQQKYNKTGS 700

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVI 630
            K M  G  M     + + Y E+      F+    H   +   D    RRY V+
Sbjct: 701 QKHMITGKTMRVERKFQDAYEEANHMNCVFLSNESHPFKIEEND----RRYFVV 750


>gi|54307149|ref|YP_133703.1| hypothetical protein NBU1_09 [Bacteroides uniformis]
 gi|8308024|gb|AAF74441.1|AF238307_5 unknown [Bacteroides uniformis]
          Length = 396

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 86/308 (27%), Gaps = 51/308 (16%)

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
              + +   ++ +  +P  N    K    W N      +       K+   ++     F 
Sbjct: 4   EEYMRVGTTLYKVVNQPCANGGYEKKRVVWNN------STLRQDYGKNYLATVPKYDGFC 57

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
              + L+      G  +        + ++   +                      L+   
Sbjct: 58  TVPNHLNYQKEIEGFLN------LYEPIEHKPQQGDFS-------------HIQSLMRHI 98

Query: 477 FESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
           F  + E+ MDY        L    K    + +     +GKST +N +K  F    V    
Sbjct: 99  FGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF-ENNVTFNT 154

Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
             D       +            G  ++++ E       ++ ++K ++           G
Sbjct: 155 NEDFRSQFNSDWA----------GKLLIVVDEVLLYRREDSERLKNLSTTFTYKVEAK-G 203

Query: 595 NTYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKY 651
              +E        +  N      + +  +  +W R  ++P        D +F QKL    
Sbjct: 204 KDRTEIAFFAKFVLCSNNEYLPILIDAGETRYWVR-KIMPLQS----DDTNFLQKL-KAE 257

Query: 652 TLEAKKWF 659
                 + 
Sbjct: 258 IPAFLYFL 265


>gi|167582916|ref|ZP_02375790.1| inner membrane protein [Burkholderia thailandensis TXDOH]
          Length = 952

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 17  DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDTRDVWKSFKGGKI 68


>gi|326680871|ref|XP_003201650.1| PREDICTED: DNA-binding protein RFX7-like [Danio rerio]
          Length = 1431

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 6/80 (7%)

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           WI +  +           +   Y  Y +   N     +S       +K       +K  +
Sbjct: 92  WIRNHLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKARR 146

Query: 756 IEKEWKSKRIIKGLKLKPAF 775
           +    KSK    GL+ K AF
Sbjct: 147 LGMRGKSKYCYSGLR-KKAF 165


>gi|123197575|ref|XP_001283827.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121844070|gb|EAX70897.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKNL 179


>gi|331703012|ref|YP_003358129.2| RepB [Streptomyces sp. Y27]
 gi|329331765|gb|ADA71989.2| RepB [Streptomyces sp. Y27]
          Length = 362

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 56/258 (21%), Gaps = 56/258 (21%)

Query: 14  IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID--------------KLPACGFGFVCG 59
           +  G  ++P    DK       +  +  ++E+++              K      G + G
Sbjct: 45  VSRGIPVVPCGRTDKA-AMAAGF-GKSATAEQLERFGDPEWVARAWSTKYARAHVGLLTG 102

Query: 60  VGEQ--------PLYAFDIDSKDEKTANTFKDTFEILHGT----------------PIVR 95
              Q         L   D+D                  GT                    
Sbjct: 103 RVTQAAPAELGRGLVVIDLDMPKAGADLPTGRWAGCAGGTDVLELLMREAGADWPDTYTV 162

Query: 96  IGQKPKILIPFRMNKEG--IKKKKTTESTQGH---------LDILGCGQYFVAYNIHP-K 143
           +     + + +R  ++G  I           +         +D+ G G Y +A   H   
Sbjct: 163 LTPSGGMHLYYRQPEDGPLIGCATGAGGDLENPRPPHIGPMVDVRGIGGYVIAAGSHSAA 222

Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
             + Y                L    +E L         P    +      +        
Sbjct: 223 QGRPY----ARESPPDLLPQPLPAWLLELLRPAAAPAPAPRPAVRILPTGDRAERYATAA 278

Query: 204 QYTNREITAFLSCFGEEF 221
                   A L       
Sbjct: 279 LEGAAADLAALRPGDHRR 296


>gi|56694890|ref|YP_164400.1| hypothetical protein BCBBV1cgp22 [Bacillus phage BCJA1c]
 gi|52631317|gb|AAU85069.1| 22 [Bacillus phage BCJA1c]
          Length = 740

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 24/157 (15%)

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNY 267
           ++ A L      +    + EW+ V MA+  E   +S        WSK+ G  Y       
Sbjct: 6   DLIALLEYIDPSYL--DYQEWLNVGMALKSEGYTASD----WEDWSKRDGPRYHPGECFK 59

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327
           KW TF+   I        T  ++         +     +         +     G+  Y 
Sbjct: 60  KWTTFEGNGI--------TGATITQMAKDNGWQ--PRQKEDHELA---WDDEITGNDDYV 106

Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
              K W +       I      +    +  +L ++ E
Sbjct: 107 VIDKNWIE----GKEIAEPANWQPVRELTTYLETLFE 139


>gi|213692143|ref|YP_002322729.1| Helicase superfamily 3 [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213523604|gb|ACJ52351.1| Helicase superfamily 3 [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320458261|dbj|BAJ68882.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 837

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 10/204 (4%)

Query: 471 DLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
            ++  +     +      R +    L  +  +     +G GG+GKSTL   +    G+Q 
Sbjct: 262 WILDQWTGHDTDSTLNLQRSLAAPFL-RSHPECAYVYQGPGGTGKSTLAKDLMEHLGDQA 320

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMT 588
                   + Q     A      L+  + +       T+   E +   +K +  G    +
Sbjct: 321 TT-MSLDLLAQPTAMSAENKMGDLMSHLLALSDDYDPTHGRFEKSLPNLKTLLTGLLPFS 379

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648
           AR    N+    P S              +  +A  RR+        IA+        L 
Sbjct: 380 ARRQGENSVDGMPQSVHLITTNYHLPV--SSSEAEQRRFAF----STIASPTTRARHYLP 433

Query: 649 TKYTLEAKKWFLKGVKAYISKGLD 672
            +       + L G   +++ G  
Sbjct: 434 FRRKHGFWPFMLIGAITWLTIGDR 457



 Score = 41.4 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 45/179 (25%), Gaps = 19/179 (10%)

Query: 63  QPLYAFDIDSKDEKTANTFKDTFEILHGT---PIVRI----GQKPKILIPFRMNKEGIKK 115
                 D+D   +   + ++     +      P+ R          + + + +      K
Sbjct: 623 DDYMWVDLDCHKQDQMSGWEQIQTDVGPYGTPPLPRTFAVRTPSGGVHLLYHIPDGARLK 682

Query: 116 KKTTESTQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
            +T     G +D   G   Y V         + YT    P     +  P LS+  + +  
Sbjct: 683 SRT--HNGGQIDFKIGRDGYVVMGGSVLPDGRRYT----PIDRPEDRIPDLSDAFLRW-A 735

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLS----CFGEEFYNGSHDEW 229
           +       P      +   +     +     +                +  Y   +  W
Sbjct: 736 ERVDATDKPRHAPAPARTAAAFDLPSPGMPGSPEGEPDMSPIPEGRRNDTLYRWGYGRW 794


>gi|322816464|gb|EFZ24760.1| hypothetical protein TCSYLVIO_9094 [Trypanosoma cruzi]
          Length = 712

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT 271
                       S+D W+ V +A+H+ +       E   R+S +    Y  E+   KW  
Sbjct: 626 EKLRRMPPRSAESYDIWVRVGLALHNFSNEDHV-FEEWVRFSLKCPQKYSRESCRKKWQQ 684

Query: 272 FDF 274
           F+ 
Sbjct: 685 FER 687


>gi|71667860|ref|XP_820875.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70886237|gb|EAN99024.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 721

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT 271
                       S+D W+ V +A+H+ +       E   R+S +    Y  E+   KW  
Sbjct: 635 EKLRRMPPRSAESYDIWVRVGLALHNFSNEDHV-FEEWVRFSLKCPQKYSRESCRKKWQQ 693

Query: 272 FDF 274
           F+ 
Sbjct: 694 FER 696


>gi|71660435|ref|XP_821934.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70887325|gb|EAO00083.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 722

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT 271
                       S+D W+ V +A+H+ +       E   R+S +    Y  E+   KW  
Sbjct: 636 EKLRRMPPRSAESYDIWVRVGLALHNFSNEDHV-FEEWVRFSLKCPQKYSRESCRKKWQQ 694

Query: 272 FDF 274
           F+ 
Sbjct: 695 FER 697


>gi|123315163|ref|XP_001292021.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121866944|gb|EAX79091.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSNALKSLITDKVGVVERKYKDQRVSENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123183399|ref|XP_001280876.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121834168|gb|EAX67946.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    I  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMISNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|121634686|ref|YP_974931.1| hypothetical protein NMC0853 [Neisseria meningitidis FAM18]
 gi|120866392|emb|CAM10135.1| hypothetical protein (putative ATP-binding protein) [Neisseria
           meningitidis FAM18]
 gi|325132326|gb|EGC55019.1| zinc-binding domain of primase-helicase family [Neisseria
           meningitidis M6190]
 gi|325138491|gb|EGC61057.1| Zinc-binding domain of primase-helicase family protein [Neisseria
           meningitidis ES14902]
 gi|325142185|gb|EGC64608.1| Zinc-binding domain of primase-helicase family protein [Neisseria
           meningitidis 961-5945]
 gi|325198113|gb|ADY93569.1| Zinc-binding domain of primase-helicase family protein [Neisseria
           meningitidis G2136]
          Length = 948

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 68/514 (13%), Positives = 121/514 (23%), Gaps = 108/514 (21%)

Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342
            +    + +      +      +R    Y   +    K        D    +     +  
Sbjct: 453 GKDVVDAWYEWGRAPVLTMYEINRLKKDYA--LIQAVKDDDT---QDMMERFIYLDGSAS 507

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
           IW   L ++       L    +        P    K      F          +      
Sbjct: 508 IWDNKLWRVVPEKAARLSMTPDGFKIWVNSPSRIVKRFDRLVFEPGRVLSDDYINIFRGM 567

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
               +          T+  L                                     +  
Sbjct: 568 PIEPKFPIPKEDMPETNYEL-------------------------------------YRL 590

Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGV-GGSGKSTLMN 519
               +  L+L++       + ++Y    +   L   G K    + + G   G+GKS    
Sbjct: 591 FPEIKPILNLINHLCNGDYQQVEYILNWLAYPLQNVGAKMTTAVVMHGHIHGAGKSFFFE 650

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS--ETNENDEINAAK 577
            I      +Y       D+  N                G    I     TN+        
Sbjct: 651 EIVKPMYGEYGATYGQEDLESNYTANRS----------GKMFGIFEEVYTNQQKYNKTGS 700

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPI 636
            K M  G  M     + + Y E+      F+    H   +   D    RRY V+  +K +
Sbjct: 701 QKHMITGKTMRVERKFQDAYEEANHMNCVFLRNESHPFKIEEND----RRYFVVWPEKKL 756

Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG--------------------LDVDIP 676
             +             +     FL     Y++ G                     D + P
Sbjct: 757 DKKLRDEVLDCIGNDGVRLFYSFLLCWNFYLTYGQQGAENEKGYEVIKLEEPVRFDPNTP 816

Query: 677 EVCLKAKE--------EERQGTDTYQAW----IDD---CCDIGENLWEESHSLAKSYSEY 721
                AK+          +     Y  W    I D   CC I ++LW         Y E+
Sbjct: 817 PPMTAAKQNVISYGRYAWQT---FYSEWAGGGIKDLPFCCCITDDLWL-------VYKEW 866

Query: 722 REQELNYDR-KRISTRTVTLNLKQKGFIGGIKRE 754
             Q    +  K    + +   + +       K +
Sbjct: 867 CRQNGERETGKTKFLQHIAEKMPRARRWWRTKNK 900


>gi|123166527|ref|XP_001279261.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121828317|gb|EAX66331.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMTAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKSL 179


>gi|157865925|ref|XP_001681669.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68124967|emb|CAJ02695.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 543

 Score = 53.4 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262
           ++   +               S+D W+ V +A+H+ +       E   R+S +    Y  
Sbjct: 451 KWRRFKAVTAKLRTLPPRAAESYDVWVRVGLALHNFSNEDHV-FEEWVRFSLKSPLKYSR 509

Query: 263 ENFNYKWDTFDF 274
           E    KW  F+ 
Sbjct: 510 EVCRKKWVQFER 521


>gi|123447212|ref|XP_001312348.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121894192|gb|EAX99418.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|256841352|ref|ZP_05546859.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737195|gb|EEU50522.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 418

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 58/197 (29%), Gaps = 26/197 (13%)

Query: 465 PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
                  L+   F  + E+ MDY        L    K    + +     +GK+T +N +K
Sbjct: 109 DFPNIKKLLFHIFGEQYELGMDYLQLLY---LRPVQKLPILLLVSEERNTGKTTFLNFLK 165

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
             F +    N       Q                 G  ++++ E   +   ++ ++K ++
Sbjct: 166 ALFQDNVTFNTNEDFRSQFN-----------ADWAGKLLIVVDEVLLSRREDSERLKNLS 214

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA---NR 639
                      G   +E        +  N        D+   R      + + I+   + 
Sbjct: 215 TTLSYKVEAK-GKDRNEISFFAKFVLCSNNESLPVIIDEGETR-----YWVRKISSLQSD 268

Query: 640 DASFAQKLETKYTLEAK 656
           D  F +KL         
Sbjct: 269 DTDFLRKLI-AEIPAFL 284


>gi|261881017|ref|ZP_06007444.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270332245|gb|EFA43031.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 396

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 69/233 (29%), Gaps = 27/233 (11%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489
           DG   +      +P  + ++           E        L+S  F  + E+ MDY    
Sbjct: 54  DGFCTVPNHVNYQPVIDKFLNLYEPIGHQPKEGEFPHVESLISHIFGEQYELGMDYLQLL 113

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
               L    K    + +     +GKST +N +K  F N    N       Q         
Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFHNNVTFNTNEDFRSQFN------- 163

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                   G  ++++ E   N   ++ ++K ++           G    E        + 
Sbjct: 164 ----SDWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218

Query: 610 PNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
            N      + +  +  +W R I       + + D  F QKL          + 
Sbjct: 219 SNNELLPVIIDVGETRYWVRKI-----NRLESDDTDFLQKL-KAEIPAFLYFL 265


>gi|123334536|ref|XP_001294116.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121871726|gb|EAX81186.1| hypothetical protein TVAG_314530 [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL   Y +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|123390781|ref|XP_001299948.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121880900|gb|EAX87018.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSNALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123195938|ref|XP_001283419.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121842841|gb|EAX70489.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+   +  +      SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFVSLDE----RSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKNL 179


>gi|123403492|ref|XP_001302246.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121883517|gb|EAX89316.1| hypothetical protein TVAG_017640 [Trichomonas vaginalis G3]
          Length = 190

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPY-- 119

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL   Y +Y ++   Y     S RT 
Sbjct: 120 TEERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123293984|ref|XP_001290660.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123437598|ref|XP_001309593.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121863548|gb|EAX77730.1| conserved hypothetical protein [Trichomonas vaginalis G3]
 gi|121891327|gb|EAX96663.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123274309|ref|XP_001289871.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121861551|gb|EAX76941.1| hypothetical protein TVAG_441850 [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|194466777|ref|ZP_03072764.1| Bifunctional DNA primase/polymerase [Lactobacillus reuteri 100-23]
 gi|194453813|gb|EDX42710.1| Bifunctional DNA primase/polymerase [Lactobacillus reuteri 100-23]
          Length = 263

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 64/225 (28%), Gaps = 21/225 (9%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKIDK-LPACGFGFVCGVGEQPLY 66
            A      G  ++P+    K+P    K+ ++  L++E+I        +  +  +     +
Sbjct: 7   YALAYQAKGLSVLPI--AGKQPLI--KFADKPALTAEQIKTVWKKHPYAQI-ALRTDKFF 61

Query: 67  AFDIDSKDEKTANTFKDTFE---ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
             DID       + F+   +         + +  +     + +    +   +       Q
Sbjct: 62  VVDIDRHHADNIDGFESIKQLPAEYFPETLTQTTKHGGRQLFYLKRPDM--RVNQLIGYQ 119

Query: 124 GHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT- 181
             +DI      Y V         + Y W           + +++   +    +       
Sbjct: 120 PGIDIKAHQNNYVVVAPS-----EGYQWLNKNPIVTAPKSLVVNINQMRASNRRNTPNDF 174

Query: 182 --VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
              P  ++  + +         ++   N+ +   +        N 
Sbjct: 175 VIKPRERNSTTDLLETIANGLGDKGMRNKTLAGMIGALLFRGVNP 219


>gi|298249361|ref|ZP_06973165.1| helix-turn-helix domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297547365|gb|EFH81232.1| helix-turn-helix domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 393

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
           Y+  G     P+      + +  G DT   W+  C    E  W  +  +  SY+ + E  
Sbjct: 288 YLRVGQGPHPPQAVHHLPQTQLSGQDTVGWWLAACGKRVERAWVANSEIMISYANWCEA- 346

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKI--EKEWKSKRIIKGL 769
             +  +    + V+ +L   G   G+ +  +   +  K  R ++GL
Sbjct: 347 --HGYEPKKAKGVSQSLATHGLEIGVNKRVVDEHRRRKMARGVRGL 390


>gi|123163747|ref|XP_001279113.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121827803|gb|EAX66183.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKILNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|148245137|ref|YP_001219830.1| hypothetical protein CKL_4029 [Clostridium kluyveri DSM 555]
 gi|146337017|gb|ABQ23628.1| hypothetical protein CKL_4029 [Clostridium kluyveri DSM 555]
          Length = 263

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
           + +   +DIPE   +     +      + ++D+ C+       +   L ++Y ++ + E 
Sbjct: 172 LMQNFGIDIPEEVFETTGI-QCDM-AVKEFVDNQCEKT--GKVKIAELHETYMKWCKTEG 227

Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
               K ++       ++  GF            +   R   G++LK
Sbjct: 228 ---VKPLTKVKFGKEVELLGFEKAA--------FGIGRCWTGIQLK 262


>gi|123194435|ref|XP_001283062.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123244923|ref|XP_001288680.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121841695|gb|EAX70132.1| conserved hypothetical protein [Trichomonas vaginalis G3]
 gi|121858328|gb|EAX75750.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123196200|ref|XP_001283482.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121843040|gb|EAX70552.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVPNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    ++D+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKNL 179


>gi|322497389|emb|CBZ32464.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 545

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262
           ++   +               S+D W+ V +A+H+ +       E   R+S +    Y  
Sbjct: 453 KWRRFKAVTAKLRTLPPRAAESYDVWVRVGLALHNFSNEDHV-FEEWVRFSLKSPLKYSR 511

Query: 263 ENFNYKWDTFDF 274
           E    KW  F+ 
Sbjct: 512 EVCRKKWMQFER 523


>gi|321399110|emb|CBZ08451.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 545

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262
           ++   +               S+D W+ V +A+H+ +       E   R+S +    Y  
Sbjct: 453 KWRRFKAVTAKLRTLPPRAAESYDVWVRVGLALHNFSNEDHV-FEEWVRFSLKSPLKYSR 511

Query: 263 ENFNYKWDTFDF 274
           E    KW  F+ 
Sbjct: 512 EVCRKKWMQFER 523


>gi|171317656|ref|ZP_02906841.1| Primase 2 [Burkholderia ambifaria MEX-5]
 gi|171097184|gb|EDT42034.1| Primase 2 [Burkholderia ambifaria MEX-5]
          Length = 953

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 17  DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68


>gi|167618366|ref|ZP_02386997.1| inner membrane protein [Burkholderia thailandensis Bt4]
          Length = 958

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 22  DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 73


>gi|167567620|ref|ZP_02360536.1| inner membrane protein [Burkholderia oklahomensis EO147]
 gi|167569133|ref|ZP_02362007.1| inner membrane protein [Burkholderia oklahomensis C6786]
          Length = 953

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 17  DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68


>gi|146080339|ref|XP_001463994.1| hypothetical protein [Leishmania infantum JPCM5]
          Length = 545

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262
           ++   +               S+D W+ V +A+H+ +       E   R+S +    Y  
Sbjct: 453 KWRRFKAVTAKLRTLPPRAAESYDVWVRVGLALHNFSNEDHV-FEEWVRFSLKSPLKYSR 511

Query: 263 ENFNYKWDTFDF 274
           E    KW  F+ 
Sbjct: 512 EVCRKKWMQFER 523


>gi|254181452|ref|ZP_04888049.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|184211990|gb|EDU09033.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
          Length = 953

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 17  DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68


>gi|134294538|ref|YP_001118273.1| inner membrane protein [Burkholderia vietnamiensis G4]
 gi|134137695|gb|ABO53438.1| inner membrane protein [Burkholderia vietnamiensis G4]
          Length = 958

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 22  DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 73


>gi|322489396|emb|CBZ24655.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 543

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262
           ++   +               S+D W+ V +A+H+ +       E   R+S +    Y  
Sbjct: 451 KWRRFKAVTAKLRTLPPRAAESYDVWVRVGLALHNFSNEDHV-FEEWVRFSLKSPLKYSR 509

Query: 263 ENFNYKWDTFDF 274
           E    KW  F+ 
Sbjct: 510 EVCRKKWLQFER 521


>gi|123449730|ref|XP_001313581.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121895470|gb|EAY00652.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKNL 179


>gi|27764600|ref|NP_776223.1| hypothetical protein pCG2_1 [Corynebacterium glutamicum]
 gi|27657769|gb|AAO18199.1| hypothetical protein [Corynebacterium glutamicum]
          Length = 622

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 60/218 (27%), Gaps = 26/218 (11%)

Query: 16  NGFKLIPLRLGDKRPQRLGKWEEQLLSS-EKIDKLPACG--FGFVCGVGEQPLYAFDIDS 72
            G+ + P+     +P    KW  +  +    I  +       G   G+    L   D D+
Sbjct: 16  AGWYVFPVS-QAGKPLV--KWSTEATNDPAVIATMFNGNERIGIHTGL--SGLVVVDRDN 70

Query: 73  KDEKTANTFKDTFEILHGTPIVRIGQKPKILI-PFRMNKEGIKKKKTTESTQGHLDILGC 131
           K  K                +    +  +     F    +      T       +DI   
Sbjct: 71  KHGKNGFKALVASGKPLPATMHYTSRSGRGRHDLFIAPTDIECTVGTDVHGMQGVDIRAG 130

Query: 132 GQYFVAYN---IH-PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187
               +       H P      TWT  P +        L  +   +L +       P V  
Sbjct: 131 VGMIIYNGKALSHAPVLAHAPTWTILPKQESH-----LPADLSMWLSEERNPRLSPAVVK 185

Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
             + IP++  +N         ++ A ++      + G 
Sbjct: 186 LIAAIPTQGVSNG--------DLMALITPIVSALWWGD 215


>gi|331004624|ref|ZP_08328088.1| hypothetical protein HMPREF0491_02950 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409649|gb|EGG89086.1| hypothetical protein HMPREF0491_02950 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 2532

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/434 (9%), Positives = 111/434 (25%), Gaps = 38/434 (8%)

Query: 5   QWKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
           +W              +P+    K  +      W       + + K  + G GF  G   
Sbjct: 21  RWCLYKIILRDGKNTKMPIMPNGKPAKSNDRKTWHSFDDCMDALCKNHSLGLGFFLG--- 77

Query: 63  QPLYAFDIDSKDEKT---------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
                 DID   ++          A+   +    +     +   +   +         G 
Sbjct: 78  DGYIGIDIDKVSDEIMEYSMDFNAASMTANFLRGISTYAEISPSKTG-LHFI------GK 130

Query: 114 KKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDT--PLLSEEDV 170
            K         +L+I    ++F     I     +            +     P +   + 
Sbjct: 131 GKMPGERKRYKNLEIYDRDRFFTITGNILKDKDRSKIVNINQELLPLYQIYMPSIDSVEG 190

Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA-FLSCFGEEFYNGSHDEW 229
           +         ++                N     Y+  ++   +   +   F + S  ++
Sbjct: 191 KAGRINLNPSSLAYKNRFSQNDILNILFNRGYFNYSGEDLRQIYNGNYQNYFNSQSEADF 250

Query: 230 IPVVMAVHHETRGSSK-------GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
             +   +++     +        G +  + + ++GST        +      +      +
Sbjct: 251 FMLGRLLYYTADVEASISLMERGGLKRNKWYKRRGSTDYIHYIADRAMNGISKFYDWNKE 310

Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342
           K      +     +   K     R+S      + S   +      +  K + K   NN  
Sbjct: 311 KADIAKDIKQEETENNKKEGKMPRYSTEKIGDILSHSLEEIRRDVSAYKDFLKTMGNN-- 368

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
            +  +      SI +             +  +   ++ K              + + +  
Sbjct: 369 -YKYSYMHQL-SIYSTYKRA--TACAEYDFWKKLGRSVKRGEKGIPILDLSMRLPKVNYV 424

Query: 403 KSTAQSLEAGSIFS 416
              +Q++  G+  +
Sbjct: 425 FDVSQTVSIGNKIN 438


>gi|323187922|gb|EFZ73217.1| zinc-binding domain of primase-helicase family protein [Escherichia
           coli RN587/1]
          Length = 770

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 88/332 (26%), Gaps = 25/332 (7%)

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRC 489
             G+       +  P     +    G   V G+ S  +LD +       +++   Y    
Sbjct: 416 PGGV-GFYPRPERCPDDVYNLFTGWGVVPVPGDVSP-YLDHLEKVVCSGNKQAFVYLVGW 473

Query: 490 VGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
           +   +     K    + ++ + G+GK T +  +    G   V    A  I          
Sbjct: 474 LAHLVQKPDEKPSVAVVMKAIPGTGKGTTVKPVMQIMGQYGVQVNGAGQITGKFN----- 528

Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
                  +    +V   E   ++   A ++K +   D +       +     P       
Sbjct: 529 -----ATMANKLLVFADEVTVSNSREADRLKGIISEDTINLERKGIDP-EPMPNFSRLIF 582

Query: 609 VPNKHLFVRNPDDAWW-RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
             N    +R    +   RRY+V+      A ++  +  +L            +  +  + 
Sbjct: 583 ASNSEQVLR---ASIRERRYLVLEPSPEFA-QEKHYFDRLHQWIANNGAAHLMDHLLHFD 638

Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIGEN---LWEESHSLAKSYSEYRE 723
               D     V      E        + +I  + C                 + +     
Sbjct: 639 LSHFDPRRAPVTAGLIREILNNLPPAEGYIYAELCSPTPFRGLARLSVSEEIERFVSQCR 698

Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
                     + R +   L   G     + ++
Sbjct: 699 DTGIDMTPPAARRHIGRILVAIGLERQGRSDR 730


>gi|123136133|ref|XP_001277174.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121820281|gb|EAX64244.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|281426086|ref|ZP_06256999.1| conserved hypothetical protein [Prevotella oris F0302]
 gi|281399810|gb|EFB30641.1| conserved hypothetical protein [Prevotella oris F0302]
          Length = 396

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 60/206 (29%), Gaps = 26/206 (12%)

Query: 459 PFVEGEPSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
              +         L+   F  + E+ MDY        L    K    + +     +GKST
Sbjct: 81  NQPKEGEFPHIESLIRHIFGEQYELGMDYLQLLY---LQPVQKLPILLMVSEERNTGKST 137

Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
            +N +K  F N    N       Q                 G  ++++ E   N   ++ 
Sbjct: 138 FLNFLKAVFQNNVTFNTNEDFRSQFN-----------ADWAGKLLIVVDEVLLNRREDSE 186

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFD 633
           ++K ++           G    E        +  N      + +  +  +W R I     
Sbjct: 187 RLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLCSNNELLPVIIDVGETRYWVRKI----- 240

Query: 634 KPIANRDASFAQKLETKYTLEAKKWF 659
             + + D  F QKL          + 
Sbjct: 241 NRLESDDTDFLQKL-KAEIPAFLYFL 265


>gi|323138259|ref|ZP_08073331.1| hypothetical protein Met49242DRAFT_2719 [Methylocystis sp. ATCC
           49242]
 gi|322396511|gb|EFX99040.1| hypothetical protein Met49242DRAFT_2719 [Methylocystis sp. ATCC
           49242]
          Length = 818

 Score = 53.0 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 95/308 (30%), Gaps = 46/308 (14%)

Query: 467 QEFLDLVSGYF-----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG--GSGKSTLMN 519
            +    ++  +            Y  R +  A+    K    + +      GSGKST+ +
Sbjct: 471 DKIKSFLAHLWVVIARRDRRKFKYIVRWLSWAVQNPEKRAETVIVLKSESEGSGKSTVSD 530

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
            ++  FG   V  ++ ++I+     +   A+   ++L  +           D   A KIK
Sbjct: 531 AMRVIFGKHAVSISDPAEIVGTHVDDIEFASF--VQLEEALFA-------GDPKTADKIK 581

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
               G  +         Y ++       +  N    V    DA  RR+ +      +++ 
Sbjct: 582 HSITGATLRINPKGRKAY-QALNRLHAILTTNHAWSVPAGRDA--RRWFICE----VSDE 634

Query: 640 ---DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQA 695
              D ++  K+            L  ++          ++P     A+++ R  + +   
Sbjct: 635 KVGDRAWFDKIYDDLQAGGYGQLLHYLQRKKLGSFHPRNMPRTFELAEQQIRSAS-SIHQ 693

Query: 696 WI-----------------DDCCDIGENLWEESHSLAKSY-SEYREQELNYDRKRISTRT 737
           W+                  +   +       +  L  +Y    R Q    D+K    R 
Sbjct: 694 WLLSCAADGAIEAYERGVRKEHLQLELGADHATTKLYDAYAGAQRMQGGRVDQKIHFARM 753

Query: 738 VTLNLKQK 745
           +   L + 
Sbjct: 754 LAKILGEN 761


>gi|327309875|ref|YP_004336773.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326955210|gb|AEA28906.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 376

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/273 (8%), Positives = 51/273 (18%), Gaps = 62/273 (22%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRL-----------------GKWEEQLL-SSEKIDK 48
           +  A  A   G  + P++ G K P                      WE++      +I +
Sbjct: 49  RRVALDAAAAGLFVFPVQPGGKLPAVPRHSAERCRQRGICADGHRGWEQRATRDRAQICR 108

Query: 49  L------PACGFGFVCGVGEQPLYAFDIDSK------------DEKTANTFKDTFEILHG 90
                       G  CG     +   D+D+               +  +           
Sbjct: 109 WWSGDESARFNVGIACGP--SGIVVIDLDTSTEPLDGCGGATTGREVLDQLTARHGETLP 166

Query: 91  TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNIHPKT----- 144
                +       + +RM +               +++    G +  +      T     
Sbjct: 167 DTYSTMTPTDGEHLYYRMPE--------------GVELRNTHGGHGHSLGPLIDTRGGGG 212

Query: 145 ----KKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200
                            +      L +     L                    +  +   
Sbjct: 213 FIVGAGSIRPEGAYMVAEHGQIAELPDWLATLLTPPPPPEPRQGEPMALPTRRANAYVAA 272

Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
                T     A            +      V 
Sbjct: 273 ILAGETAAVEQAPKGQRQITLLTAARTLGRLVG 305


>gi|123169758|ref|XP_001279483.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121829183|gb|EAX66553.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTQKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|167463641|ref|ZP_02328730.1| RecA-family ATPase [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 750

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 24/220 (10%)

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST-YDEENFNY 267
           ++ A L      +   S+ +W+ V MA+ +E   +S        WSK+ ST Y       
Sbjct: 6   DLVALLEYIDPSYL--SYQDWVAVGMALKYEGYTASD----WDDWSKRDSTRYHPGECFK 59

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327
           KW TF+            T  ++           +  S   D                Y 
Sbjct: 60  KWSTFEGTGT------PITGATITQMAKDNGW--MPRSTHQDDRELDWNDEITGD---YV 108

Query: 328 ADTKAWYK-KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN-KNSKSPRF 385
              + W + K+ +   +W+    +   + +  L    E+V  + +  +++  K   +   
Sbjct: 109 VIDRNWIEGKEIHEPNVWNPV--QQLTTYLETLFEASENVGYVVDTWQNDEGKYLPTKGA 166

Query: 386 WFNTDYRRQNVEE--NSKAKSTAQSLEAGSIFSITSDLLD 423
           W  +      +    N    S        +   I  + LD
Sbjct: 167 WDRSAGELIQLLNQCNGDIGSVLGDYNPEAGAWIRFNPLD 206


>gi|123231022|ref|XP_001286218.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121851323|gb|EAX73288.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFVMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKNL 179


>gi|18450234|ref|NP_569125.1| hypothetical protein pGO128_p3 [Gluconobacter oxydans]
 gi|18378116|emb|CAD21834.1| hypothetical protein [Gluconobacter oxydans]
          Length = 416

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 19/177 (10%)

Query: 462 EGEPSQEFLDLVSGYFESEEV-------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
           E +  Q     +  +  +E+          +    V   +  G K    +   G  G  K
Sbjct: 129 EWDGVQRLDTWLHDFLGAEDSEYTAGVGRLFLIGMVARVMEPGCKNDHVLIFEGNQGIRK 188

Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
           ST   ++    G++Y           + PP    +      L G  +V ++E +     +
Sbjct: 189 STACKVLAG--GSRY--------FSDSLPPIREGSKDLASHLAGKWLVEVAEMSAASRAD 238

Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
              +K        T R  YG      P         N+  ++R+      RR   + 
Sbjct: 239 TEALKAFLTRTHETYRPAYGRNEITQPRQCVLVGTTNRKEYLRDSTGD--RRVWPVK 293


>gi|154411914|ref|XP_001578991.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121913193|gb|EAY18005.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123366212|ref|XP_001296554.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121876208|gb|EAX83624.1| hypothetical protein TVAG_102920 [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +I++     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIEE----SDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123225789|ref|XP_001285793.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121850041|gb|EAX72863.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|325266444|ref|ZP_08133121.1| conjugal transfer mating pair stabilization protein TraN [Kingella
           denitrificans ATCC 33394]
 gi|324981887|gb|EGC17522.1| conjugal transfer mating pair stabilization protein TraN [Kingella
           denitrificans ATCC 33394]
          Length = 1854

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
             + W  V  A+  E     +G      WS+    ++E   N +W +F +  I
Sbjct: 23  DRETWWKVGAALKSEFDEGGRGL--WEDWSRSYPKWNERESNAQWKSFKYGHI 73


>gi|123206048|ref|XP_001284824.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121847126|gb|EAX71894.1| hypothetical protein TVAG_084990 [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKSL 179


>gi|123318758|ref|XP_001293041.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121869356|gb|EAX80111.1| hypothetical protein TVAG_041770 [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +I++     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIEE----SDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|303236684|ref|ZP_07323265.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302483188|gb|EFL46202.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 396

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 27/233 (11%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489
           DG   +      +P  + ++           E        L+S  F  + E+ MDY    
Sbjct: 54  DGFCTVPNHVNYQPVIDKFLNLYEPIGHQPKEGEFPHVESLISHIFGEQYELGMDYLQLL 113

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
               L    K    + +     +GKST +N +K  F      N    +  ++   +    
Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVF-----QNNVTFNTNEDFRSQFNS- 164

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                   G  ++++ E   N   ++ ++K ++           G    E        + 
Sbjct: 165 -----DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTLEAKKWF 659
            N  L     D    R      + + I      D  F QKL          + 
Sbjct: 219 SNNELLPVIIDVGETR-----YWVRKIERLKSDDTDFLQKL-KAEIPAFLYFL 265


>gi|123268667|ref|XP_001289652.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121860998|gb|EAX76722.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|332843882|ref|XP_510432.3| PREDICTED: DNA-binding protein RFX7 isoform 2 [Pan troglodytes]
          Length = 1460

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|297296511|ref|XP_001090581.2| PREDICTED: DNA-binding protein RFX7 isoform 2 [Macaca mulatta]
          Length = 1459

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|291561295|emb|CBL40094.1| Primase C terminal 1 (PriCT-1)./Bifunctional DNA
           primase/polymerase, N-terminal [butyrate-producing
           bacterium SS3/4]
          Length = 262

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 11/125 (8%)

Query: 19  KLIPLRLGDKRPQR---LGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID-SKD 74
             IP++  +K+         W     +   ++       GFV    +  L   DID   +
Sbjct: 24  SKIPMKAFEKKAASSTAPDTWSSFEQAEWAVENGYYDNLGFVF--ADNGLVGIDIDAGFE 81

Query: 75  EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQY 134
           +               +   +      + I  R       K     +    ++I    ++
Sbjct: 82  DGLMTPLCADIMTACKSYTEKSRSGRGVHILLRGTLPFHGK-----NNLAGVEIYKARRF 136

Query: 135 FVAYN 139
           F+   
Sbjct: 137 FIMTG 141


>gi|291402954|ref|XP_002717768.1| PREDICTED: regulatory factor X domain containing 2 [Oryctolagus
           cuniculus]
          Length = 1461

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|219521445|gb|AAI43439.1| RFX7 protein [Homo sapiens]
          Length = 1292

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 14  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 70

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 71  KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 103


>gi|300796622|ref|NP_001179749.1| DNA-binding protein RFX7 [Bos taurus]
 gi|297479654|ref|XP_002690932.1| PREDICTED: regulatory factor X, 7 [Bos taurus]
 gi|296483180|gb|DAA25295.1| regulatory factor X, 7 [Bos taurus]
          Length = 1461

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|148613886|ref|NP_073752.5| DNA-binding protein RFX7 [Homo sapiens]
          Length = 1460

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|149691918|ref|XP_001500788.1| PREDICTED: regulatory factor X domain containing 2 [Equus caballus]
          Length = 1459

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|149028792|gb|EDL84133.1| similar to hypothetical protein FLJ12994 (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 1378

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|149028793|gb|EDL84134.1| similar to hypothetical protein FLJ12994 (predicted), isoform CRA_b
           [Rattus norvegicus]
 gi|165970890|gb|AAI58677.1| Rfx7 protein [Rattus norvegicus]
          Length = 297

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|148694315|gb|EDL26262.1| mCG131701, isoform CRA_a [Mus musculus]
          Length = 1378

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|123202727|ref|XP_001284149.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121845071|gb|EAX71219.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAESLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|74213029|dbj|BAE41660.1| unnamed protein product [Mus musculus]
 gi|148694316|gb|EDL26263.1| mCG131701, isoform CRA_b [Mus musculus]
          Length = 291

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|88703055|ref|NP_001028708.1| regulatory factor X domain containing 2 [Mus musculus]
 gi|162319108|gb|AAI56262.1| Regulatory factor X, 7 [synthetic construct]
          Length = 1459

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|188595675|ref|NP_001120962.1| regulatory factor X domain containing 2 [Rattus norvegicus]
          Length = 1459

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|74189197|dbj|BAC41187.2| unnamed protein product [Mus musculus]
          Length = 309

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|219684051|ref|YP_002470433.1| hypothetical protein CKR_P23 [Clostridium kluyveri NBRC 12016]
 gi|219570559|dbj|BAH08542.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 273

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
           + +   +DIPE   +     +      + ++D+ C+       +   L ++Y ++ + E 
Sbjct: 182 LMQNFGIDIPEEVFETTGI-QCDM-AVKEFVDNQCEKT--GKVKIAELHETYMKWCKTEG 237

Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
               K ++       ++  GF            +   R   G++LK
Sbjct: 238 ---VKPLTKVKFGKEVELLGFEKAA--------FGIGRCWTGIQLK 272


>gi|107023303|ref|YP_621630.1| inner membrane protein [Burkholderia cenocepacia AU 1054]
 gi|116690386|ref|YP_836009.1| inner membrane protein [Burkholderia cenocepacia HI2424]
 gi|105893492|gb|ABF76657.1| inner membrane protein [Burkholderia cenocepacia AU 1054]
 gi|116648475|gb|ABK09116.1| inner membrane protein [Burkholderia cenocepacia HI2424]
          Length = 958

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W  V MA+  E     +G  +   WS+    Y+ ++    W +F   +I
Sbjct: 22  DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNVKDARDVWKSFKGGKI 73


>gi|167736508|ref|ZP_02409282.1| hypothetical protein Bpse14_00515 [Burkholderia pseudomallei 14]
          Length = 953

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+ ++    W +
Sbjct: 5   ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNAKDARDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|123239629|ref|XP_001287655.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121855471|gb|EAX74725.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMSASKRTFLANVKSL 196


>gi|254555657|ref|YP_003062074.1| prophage Lp3 protein 7 [Lactobacillus plantarum JDM1]
 gi|254044584|gb|ACT61377.1| prophage Lp3 protein 7 [Lactobacillus plantarum JDM1]
          Length = 264

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 29/209 (13%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKIDKL----PACGFGFVCGVGEQ 63
            A +    GF ++P+    K+P    K+ +Q  L+ ++I       P             
Sbjct: 7   YAVRYAQAGFSVLPMI--GKKPMI--KFADQPALTIDQIQSYWRSHPYAQLALRT----T 58

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI----GQKPKILIPFRMNKEGIKKKKTT 119
             +  DID +    A+ FK   +  +   +              + +    +     +  
Sbjct: 59  NFFVIDID-EHPGGADGFKSIADYPNPEYLRDTLSQATAGGGRQLFYLKRDDCA--IQQR 115

Query: 120 ESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
                 +DI      Y +      +  K Y W                 E V+ +    +
Sbjct: 116 IGWLPGVDIKAHVNNYVMVAPSE-RNGKLYQWEN------HNPIVTAPRELVQAI-NANR 167

Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
           + TV +  D       K+ T        +
Sbjct: 168 DDTVDVFTDLNIDYTEKSGTATLFETIVD 196


>gi|123204829|ref|XP_001284525.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121846208|gb|EAX71595.1| hypothetical protein TVAG_510200 [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMTAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|167518862|ref|XP_001743771.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777733|gb|EDQ91349.1| predicted protein [Monosiga brevicollis MX1]
          Length = 589

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 74/260 (28%), Gaps = 54/260 (20%)

Query: 467 QEFLDLVSGYF--ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
           Q  L  +         +  +Y    +     G  K Q  + + G GG GKS L  L++  
Sbjct: 148 QYILGFIKDIICGGYAQQDEYILNWLSCTAAG-VKVQTHLLMEGDGGEGKSLLCELMREI 206

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
            G +Y   +   ++ Q      G++   L  +          +N +       +K +T  
Sbjct: 207 LGARYYSTSNVEEVCQYTSNFEGRSLIVLEEMP-------VSSNSSKRGFTDALKSLTTE 259

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK-----------------HLFVRNPDDAWWRRY 627
                R  +   Y +S  +F   +  N                      R  D  ++ R 
Sbjct: 260 SVFACRRMHNQAYQQSN-TFNIIVNSNHSAEELTQTNKRRAVAFDISRKRVGDVEYYNRL 318

Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV-KAY----------ISKGLDVDIP 676
                 K I ++D   A  L              G+ K +            + L   +P
Sbjct: 319 H-----KYICDKDVQLAFYLFLMSRF-------DGMPKDWTGNEVPMSIKRREKLTRSLP 366

Query: 677 EVCLKAKEEE---RQGTDTY 693
                  E     ++  D  
Sbjct: 367 PSIKFLIEHYVLPKRDIDNL 386


>gi|330445050|ref|ZP_08308703.1| primase C terminal 2 family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489241|dbj|GAA03200.1| primase C terminal 2 family protein [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 1216

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285
           +++W  +  +++ E    ++  ++   WS Q S+YD++ F   W +F           ++
Sbjct: 26  YNDWAKLGRSLYSEYGDDAR--DMFELWSAQSSSYDKKEFQSHWRSFRKTR-------KT 76

Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNK 313
            F S  Y   +   K       ++   +
Sbjct: 77  NFGSFIYMAIEAGWKPERKELTAEEKAE 104


>gi|288928586|ref|ZP_06422433.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288331420|gb|EFC70004.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 415

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 24/194 (12%)

Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
                L    F  + E+ MDY        L    K    + +     +GKST +N +K  
Sbjct: 106 PHIEALARHIFGEQYELGMDYLQLLY---LYPIEKLPILLLVSEERNTGKSTFLNFLKAL 162

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
           FGN    N       Q                 G  ++++ E   +   ++ ++K ++  
Sbjct: 163 FGNNVTFNTNEDFRSQFN-----------SDWAGKLLILVDEALLDRREDSERLKNLSTT 211

Query: 585 DCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDAS 642
                     +       A F       +   + +  +  +W R +       I   D  
Sbjct: 212 LSYKVEAKGKDRDEISFFAKFVLCSNNERLPVIIDAGETRYWVRKV-----GRIEKDDTD 266

Query: 643 FAQKLETKYTLEAK 656
           F +++  +      
Sbjct: 267 FLKRI-KEEIPAFL 279


>gi|213028729|ref|ZP_03343176.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 167

 Score = 52.6 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 46/183 (25%), Gaps = 45/183 (24%)

Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
           N  +   +      RR ++I F + I    RD     K+         +  ++       
Sbjct: 1   NNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAIIVRQLMQ------- 52

Query: 669 KGLDVDIPEVCLKAKEEE---------RQGTDTY--------------QAWIDDCCDIGE 705
                  P       + +         ++  D                  ++ +   I  
Sbjct: 53  ---KFSDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQTNGMFMGNASIIPR 109

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGIKREKIEKEWK 761
           N       L  +Y  Y E      R  +S +       + LK+ G     +  K      
Sbjct: 110 NYR---KYLYHAYLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLNYEKRHTKRGDNKP 164

Query: 762 SKR 764
             R
Sbjct: 165 ICR 167


>gi|301775138|ref|XP_002922988.1| PREDICTED: DNA-binding protein RFX7-like [Ailuropoda melanoleuca]
          Length = 1460

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAVSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|123237259|ref|XP_001287130.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121853976|gb|EAX74200.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 188

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 15/186 (8%)

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
             +   +    +N+  +K +           Y +       +    +  N         D
Sbjct: 1   NELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD 60

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCL 680
              RRY+V+        +D  +   L    T +                 +   IP    
Sbjct: 61  ---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT-- 114

Query: 681 KAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
           + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT  
Sbjct: 115 EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTFL 167

Query: 740 LNLKQK 745
            N+K  
Sbjct: 168 ANVKSL 173


>gi|123229211|ref|XP_001286063.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121850859|gb|EAX73133.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|74000781|ref|XP_544696.2| PREDICTED: similar to regulatory factor X, 5 isoform 1 [Canis
           familiaris]
          Length = 1460

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI +  +           +   Y  Y +   N     +S     
Sbjct: 95  QNAVSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|289643690|ref|ZP_06475802.1| hypothetical protein FsymDgDRAFT_3060 [Frankia symbiont of Datisca
           glomerata]
 gi|289506523|gb|EFD27510.1| hypothetical protein FsymDgDRAFT_3060 [Frankia symbiont of Datisca
           glomerata]
          Length = 140

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 7/77 (9%)

Query: 88  LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKK 146
           +  T  V  G      + ++     +  +         +DI   G Y  A    HP T +
Sbjct: 1   MTPTATVATG-GGGWHLYYQHPGTPVLSRPLPGHV--GIDIKADGGYVTAPPSTHPTTGR 57

Query: 147 EYTWTTPPHRFKVEDTP 163
            Y W        V + P
Sbjct: 58  PYQWVGTR---PVNEMP 71


>gi|123372760|ref|XP_001297536.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121877734|gb|EAX84606.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+   +  +      SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFVSLDE----RSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123439567|ref|XP_001310553.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121892328|gb|EAX97623.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
                  +     N+  +K +           Y +       +    +  N         
Sbjct: 6   CNDFQSIDTTKVWNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--H 119

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 120 TEERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123227269|ref|XP_001285968.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121850570|gb|EAX73038.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|323140297|ref|ZP_08075240.1| hypothetical protein Met49242DRAFT_4628 [Methylocystis sp. ATCC
           49242]
 gi|322394447|gb|EFX97105.1| hypothetical protein Met49242DRAFT_4628 [Methylocystis sp. ATCC
           49242]
          Length = 201

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 40/158 (25%), Gaps = 34/158 (21%)

Query: 19  KLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQPLYAFDIDSKDE 75
           +  PL     RP R        LS+++  +         G V G     L   D+D  + 
Sbjct: 1   RKTPLTP---RPGRTSG-----LSADEASRYFNGAPANIGVVLGQNSSGLSDVDLDCPEA 52

Query: 76  KTANTFKDTFEILHGTPIVRIGQ--KPKILIPFRMNK------------EGIKKKKTTES 121
             A                  G+         +  N             + I K+   ++
Sbjct: 53  IAA------APYFLPKTAAIFGRETARASHWLYYTNAASVNLPGNLAFDDPIAKEGGAKA 106

Query: 122 TQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158
               +D+  G     V      ++ +   W        
Sbjct: 107 RL--VDLRLGPKVQTVFPGSTHESGEPIAWEPGCDGEP 142


>gi|123173734|ref|XP_001279824.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121830385|gb|EAX66894.1| hypothetical protein TVAG_571120 [Trichomonas vaginalis G3]
          Length = 211

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGIVERKYRDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +ID+     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMTASKRTFLANVKSL 196


>gi|257140828|ref|ZP_05589090.1| DNA primase [Burkholderia thailandensis E264]
          Length = 950

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 5   ERASVALGYVPADDRDTWRHAGMALKAEF--GEEGFALWNEWSQGAQNYNARDTRDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|83717727|ref|YP_440202.1| DNA primase [Burkholderia thailandensis E264]
 gi|83651552|gb|ABC35616.1| DNA primase [Burkholderia thailandensis E264]
          Length = 955

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 10  ERASVALGYVPADDRDTWRHAGMALKAEF--GEEGFALWNEWSQGAQNYNARDTRDVWKS 67

Query: 272 FDFEEI 277
           F   +I
Sbjct: 68  FKGGKI 73


>gi|123209261|ref|XP_001285193.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121848222|gb|EAX72263.1| hypothetical protein TVAG_603180 [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|167900117|ref|ZP_02487518.1| hypothetical protein Bpse7_40730 [Burkholderia pseudomallei 7894]
          Length = 255

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 5   ERASVVLGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|123157923|ref|XP_001278761.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121826455|gb|EAX65831.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 193

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|313892469|ref|ZP_07826059.1| primase C-terminal domain protein [Dialister microaerophilus UPII
           345-E]
 gi|313119151|gb|EFR42353.1| primase C-terminal domain protein [Dialister microaerophilus UPII
           345-E]
          Length = 694

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 67/204 (32%), Gaps = 22/204 (10%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKK 283
            + EW+ V MA++HE        E+   WS +  + +++     K++TF           
Sbjct: 19  DYQEWLSVGMALNHE----GYPYEVWETWSSRDSARFNDGECEKKYNTFR------NNTN 68

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
             +   +     +   K     + ++       SI + G+     D    Y         
Sbjct: 69  PLSGAYIVELAKRHGWKKN---KETENKALDWNSIQEIGNLKQIVDLH--YLDTGEVPEP 123

Query: 344 WSLTLDKITASIMNFLVS--MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
            +    +    I+N+L +   K D+F +        ++ K   +         +   N  
Sbjct: 124 RN---WEPIDDIINYLNAVFYKHDIFSVV-MTSQERQDGKYVPYGKGVYRLSVDKVINDL 179

Query: 402 AKSTAQSLEAGSIFSITSDLLDSS 425
            +  ++  +   +  +T    D +
Sbjct: 180 KRYRSKGYKPDDVIGMTFGDYDKN 203


>gi|172054864|ref|YP_001806191.1| hypothetical protein cce_4777 [Cyanothece sp. ATCC 51142]
 gi|171701145|gb|ACB54125.1| hypothetical protein cce_4777 [Cyanothece sp. ATCC 51142]
          Length = 339

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/116 (11%), Positives = 32/116 (27%), Gaps = 14/116 (12%)

Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLW---------EESHSLAKS-----YSEYREQ 724
                ++     +   AW+++        +          ES  + +      Y  Y   
Sbjct: 4   VDITTDKSMVENNPIAAWLNENIIYDPQSYTHVGKAIKSTESDEVYRGASKWLYPNYCAF 63

Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
                   IS    +  L           + ++   ++   I+GLK++   +    
Sbjct: 64  CEGIKVNPISLNRFSTLLLDLCNHQLNLNDVVKDRNRNGVFIQGLKIRDHLDDEAP 119


>gi|123316513|ref|XP_001292366.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121867808|gb|EAX79436.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|220930664|ref|YP_002507573.1| primase [Clostridium cellulolyticum H10]
 gi|220000992|gb|ACL77593.1| Primase 2 [Clostridium cellulolyticum H10]
          Length = 741

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 43/171 (25%), Gaps = 19/171 (11%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST-YDEENFNYKWDTFDFEEIGDTAKK 283
            + EW+ V MA+                WS+Q +  Y       KWDTF           
Sbjct: 21  DYQEWLSVGMALK----EDGYTAADWDTWSRQDTKRYHSGECFKKWDTFRGTSS------ 70

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
             T  ++              +      N       K    +     K W +       +
Sbjct: 71  PVTAGTIVQMAKDNGWL-PKRNESGHELNWEDSIGSKDDLVVI---NKGWLE----GKEV 122

Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
                      ++++L  + E   ++    E      K         + R 
Sbjct: 123 IEPEAWDPVGQLVSYLEILFEASENVGYVTESWFNEEKQKYLPTKGAWDRT 173


>gi|123277049|ref|XP_001289970.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121861801|gb|EAX77040.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 196

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123150894|ref|XP_001277737.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123366430|ref|XP_001296637.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123367780|ref|XP_001297162.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123476968|ref|XP_001321654.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121822419|gb|EAX64807.1| conserved hypothetical protein [Trichomonas vaginalis G3]
 gi|121876343|gb|EAX83707.1| conserved hypothetical protein [Trichomonas vaginalis G3]
 gi|121877168|gb|EAX84232.1| conserved hypothetical protein [Trichomonas vaginalis G3]
 gi|121904484|gb|EAY09431.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|74229767|ref|YP_308971.1| viral helicase [Trichoplusia ni SNPV]
 gi|72259681|gb|AAZ67452.1| viral helicase [Trichoplusia ni SNPV]
          Length = 1217

 Score = 52.2 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 104/362 (28%), Gaps = 47/362 (12%)

Query: 307  FSDAYNKAMFSIYKKGHFLYTADTKAWY----KKDKNNVYIWSLTLDKIT-----ASIMN 357
            +S    K ++    K       +    Y      +++   I      KI       S++ 
Sbjct: 702  YSSGLYKKIYKDNIKWTLKKRPENIILYNNLAFFNEHRESIIDYLYSKIDKIDFIDSLIT 761

Query: 358  FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
             L S ++ +  L      ++      R     +   +  ++ +      +S +       
Sbjct: 762  ELSSPEDFIETLRTHIGSSS------RSCLTQNKNEEENDDFAVDDRINESPKDAEDVES 815

Query: 418  TSDLLDSSSRFLGEQDGI----LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-- 471
              +L D    +    + +    L  +     +P  +   +                 +  
Sbjct: 816  KENLTDFYRNYCNTWNILKRWNLWWDKLIIRRPN-DDLNSWLVRFYMRIFMTQLNLDEYN 874

Query: 472  --LVSGY---------FESEEVMD-YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM 518
               V            F +   ++       G ++ +  +  +  I++ G  GSGKS+  
Sbjct: 875  STFVKQIVRGYLYFRGFTNFNYINSLVMMHFGASMGIPSDYEKCCIYLNGKPGSGKSSFF 934

Query: 519  NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
             L++Y        +++   + +    E               I  +   NE    + +  
Sbjct: 935  ELLEYIVVVH-KHDSDKYTLSKKDTNEMEA---------DKMISQLYVINEMKVCDDSFF 984

Query: 579  KQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
            K         +    +     +  A++   IV NK L + + D     R+ V+  D    
Sbjct: 985  KSTADSTKSNSVCRKF-QGSQKYEANYKLLIVNNKPLHISDYDKGVRNRFAVVYTDHLFE 1043

Query: 638  NR 639
              
Sbjct: 1044 EN 1045


>gi|123269784|ref|XP_001289700.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121861104|gb|EAX76770.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 54/189 (28%), Gaps = 19/189 (10%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHS--LAKSYSEYREQELNYDRKRISTR 736
            + ++   +   +    +ID+      N +E      L   Y +Y ++   Y     S R
Sbjct: 121 -EERQTLLEANKSVYELFIDE------NDFECLDERSLYDEYKQYCQE---YGYMTASKR 170

Query: 737 TVTLNLKQK 745
           T   N+K  
Sbjct: 171 TFLANVKNL 179


>gi|123249958|ref|XP_001288915.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121859005|gb|EAX75985.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKAGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    K ++   +   +    +ID+     + +  +  SL  SY +Y ++
Sbjct: 125 DISKFNPRQIPHT--KERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|237810289|ref|YP_002894740.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
 gi|237504566|gb|ACQ96884.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
          Length = 950

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 5   ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|167843732|ref|ZP_02469240.1| hypothetical protein BpseB_00480 [Burkholderia pseudomallei B7210]
          Length = 950

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 5   ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|167822127|ref|ZP_02453598.1| inner membrane protein [Burkholderia pseudomallei 9]
 gi|226193316|ref|ZP_03788926.1| DNA primase TraC [Burkholderia pseudomallei Pakistan 9]
 gi|225934916|gb|EEH30893.1| DNA primase TraC [Burkholderia pseudomallei Pakistan 9]
          Length = 950

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 5   ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|167813585|ref|ZP_02445265.1| hypothetical protein Bpse9_00515 [Burkholderia pseudomallei 91]
          Length = 950

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 5   ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|254261053|ref|ZP_04952107.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
 gi|254219742|gb|EET09126.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
          Length = 950

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 5   ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|126452256|ref|YP_001064398.1| hypothetical protein BURPS1106A_0113 [Burkholderia pseudomallei
           1106a]
 gi|242316894|ref|ZP_04815910.1| DNA primase TraC [Burkholderia pseudomallei 1106b]
 gi|126225898|gb|ABN89438.1| DNA primase TraC [Burkholderia pseudomallei 1106a]
 gi|242140133|gb|EES26535.1| DNA primase TraC [Burkholderia pseudomallei 1106b]
          Length = 950

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 5   ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|126440554|ref|YP_001057153.1| hypothetical protein BURPS668_0098 [Burkholderia pseudomallei 668]
 gi|126220047|gb|ABN83553.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
          Length = 950

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 5   ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|123224874|ref|XP_001285715.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121849834|gb|EAX72785.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKILNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|76810763|ref|YP_331725.1| inner membrane protein [Burkholderia pseudomallei 1710b]
 gi|76580216|gb|ABA49691.1| inner membrane protein [Burkholderia pseudomallei 1710b]
          Length = 955

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 10  ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 67

Query: 272 FDFEEI 277
           F   +I
Sbjct: 68  FKGGKI 73


>gi|53717722|ref|YP_106708.1| hypothetical protein BPSL0082 [Burkholderia pseudomallei K96243]
 gi|52208136|emb|CAH34066.1| hypothetical protein BPSL0082 [Burkholderia pseudomallei K96243]
          Length = 955

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 10  ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 67

Query: 272 FDFEEI 277
           F   +I
Sbjct: 68  FKGGKI 73


>gi|123502810|ref|XP_001328377.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121911319|gb|EAY16154.1| hypothetical protein TVAG_465420 [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPY-- 119

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL   Y +Y ++   Y     S RT 
Sbjct: 120 TEERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKNL 179


>gi|123310861|ref|XP_001291636.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121865969|gb|EAX78706.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123284783|ref|XP_001290215.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121862400|gb|EAX77285.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123181991|ref|XP_001280571.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121833065|gb|EAX67641.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKSL 179


>gi|160897071|ref|YP_001562653.1| primase 2 [Delftia acidovorans SPH-1]
 gi|160362655|gb|ABX34268.1| Primase 2 [Delftia acidovorans SPH-1]
          Length = 309

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/153 (9%), Positives = 40/153 (26%), Gaps = 17/153 (11%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
             +    +   +   + WI   MA+  E      G ++   WS++  +Y+ +     W +
Sbjct: 3   DRIRNALQYLNHDDREVWIMAGMAIKAEI--GESGFDLWDEWSRRADSYNPKAARASWRS 60

Query: 272 FDFEEIG-----------DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM----F 316
           F    +                +                +    +R +    +       
Sbjct: 61  FRGSGVTVGSLFHEATAAGWTPRDDVAFQPLTEAQLQAQQKARDARLAAEQAQRRQDQEK 120

Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349
           +  K G  L+    +             + ++ 
Sbjct: 121 AARKAGWILHQCKHEQHAYLHSKGWPEATGSVW 153


>gi|123221437|ref|XP_001285430.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121848965|gb|EAX72500.1| hypothetical protein TVAG_547320 [Trichomonas vaginalis G3]
          Length = 211

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
                +   IP    + ++   +   +    +I++     +    +  SL   Y +Y ++
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178

Query: 725 ELNYDRKRISTRTVTLNLKQK 745
              Y     S RT   N+K  
Sbjct: 179 ---YGYMAASKRTFLANVKSL 196


>gi|123149707|ref|XP_001277699.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123194750|ref|XP_001283142.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123271704|ref|XP_001289774.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121822270|gb|EAX64769.1| conserved hypothetical protein [Trichomonas vaginalis G3]
 gi|121841930|gb|EAX70212.1| conserved hypothetical protein [Trichomonas vaginalis G3]
 gi|121861286|gb|EAX76844.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|21950724|gb|AAM78585.1| helicase [Helicoverpa armigera NPV]
          Length = 1253

 Score = 52.2 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 485  YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
                  G +L +  +  +  I++ G  GSGKS+  +L++           + +     + 
Sbjct: 938  LLMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTL--SKKE 995

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPA 602
             +  +AN  + +L           NE  E N +  K         +    Y     +  A
Sbjct: 996  TDEMEANKLISQLY--------VINELKECNDSFFKSTADSSKSNSVCRKY-QGSQKYEA 1046

Query: 603  SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
            ++   +V NK L + + D     R+ V+  D     
Sbjct: 1047 NYKLLVVNNKPLHISDYDRGVRNRFCVVYTDHEFLE 1082


>gi|123360648|ref|XP_001295890.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121875110|gb|EAX82960.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMTAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|209401140|ref|YP_002274009.1| helicase [Helicoverpa armigera NPV NNg1]
 gi|209364392|dbj|BAG74651.1| helicase [Helicoverpa armigera NPV NNg1]
          Length = 1253

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 485  YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
                  G +L +  +  +  I++ G  GSGKS+  +L++           + +     + 
Sbjct: 938  LLMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTL--SKKE 995

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPA 602
             +  +AN  + +L           NE  E N +  K         +    Y     +  A
Sbjct: 996  TDEMEANKLISQLY--------VINELKECNDSFFKSTADSSKSNSVCRKY-QGSQKYEA 1046

Query: 603  SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
            ++   +V NK L + + D     R+ V+  D     
Sbjct: 1047 NYKLLVVNNKPLHISDYDRGVRNRFCVVYTDHEFLE 1082


>gi|123173775|ref|XP_001279830.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|123331633|ref|XP_001293933.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121830398|gb|EAX66900.1| hypothetical protein TVAG_580980 [Trichomonas vaginalis G3]
 gi|121871343|gb|EAX81003.1| hypothetical protein TVAG_508390 [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +I++     +    +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|134303486|ref|YP_001111355.1| hypothetical protein GrBNV_gp88 [Gryllus bimaculatus nudivirus]
 gi|134022872|gb|ABO45421.1| unknown [Gryllus bimaculatus nudivirus]
          Length = 1329

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 84/270 (31%), Gaps = 37/270 (13%)

Query: 485  YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
             F   +    L  N+ +    + G G +GK+    +I   F                   
Sbjct: 901  LFLDILTTYYLPINENRFINILYGTGDNGKTHWCEIINCLFAGSVCQINNL--------- 951

Query: 545  EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
            ++ +A   +     + IV     NE   +    +K ++G D       Y    + S  + 
Sbjct: 952  DSNEARSHIASSYSAVIV-----NEIKYLTENIMKAISGNDKSDYSTFYTQKLTPSTHNS 1006

Query: 605  TPFIVPNKHLFVRNP--DDAWWRRYIVIPFDKPIANR-----DASFAQKLETKYTLEA-- 655
              F   N  +  +N   D A  +R++VI     I N         F   ++ +Y +    
Sbjct: 1007 ALFGATNCVISFKNKNIDTASIKRFLVIELIGKIRNDCNISCKDFFINFIKKEYLIGVTQ 1066

Query: 656  ---------KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ----GTDTYQAWIDDC-C 701
                       + +          L V   ++  +  E  ++      + +  +I +   
Sbjct: 1067 NVPRVLSHYLCFLIFSRFLDNRNSLYVTNIDIHNEDTENYQKEVYRENNIFYNFIHNMGL 1126

Query: 702  DIGENLWEESHSLAKSYSEYREQELNYDRK 731
                N + +S  +     +Y ++   + + 
Sbjct: 1127 RFAPNFFMKSKDILNLARKYIDENNKFIKN 1156


>gi|123157010|ref|XP_001278569.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121825734|gb|EAX65639.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|18138275|ref|NP_542710.1| helicase [Helicoverpa zea SNPV]
 gi|18028657|gb|AAL56093.1|AF334030_18 ORF87 [Helicoverpa zea SNPV]
          Length = 1253

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 485  YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
                  G +L +  +  +  I++ G  GSGKS+  +L++           + +     + 
Sbjct: 938  LLMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTL--SKKE 995

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPA 602
             +  +AN  + +L           NE  E N +  K         +    Y     +  A
Sbjct: 996  TDEMEANKLISQLY--------VINELKECNDSFFKSTADSSKSNSVCRKY-QGSQKYEA 1046

Query: 603  SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
            ++   +V NK L + + D     R+ V+  D     
Sbjct: 1047 NYKLLVVNNKPLHISDYDRGVRNRFCVVYTDHEFLE 1082


>gi|123410881|ref|XP_001303778.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121885182|gb|EAX90848.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y ++      +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISNFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|38638662|ref|NP_944363.1| gp54 [Burkholderia phage Bcep1]
 gi|34486044|gb|AAQ73401.1| gp54 [Burkholderia phage Bcep1]
          Length = 824

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 61/241 (25%), Gaps = 40/241 (16%)

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA----LLGGNKAQRFIHIRGVGGSGKS 515
           +   +    F   +     S+ +               L  G        + G GG+GKS
Sbjct: 510 WDGTQRLDTFFVDLCDALPSDALTATTQLLFAGIVKRQLQPGAPLPVVPVLIGPGGTGKS 569

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
             +  +  A          A             A   +  L        +E +       
Sbjct: 570 YFVEQLAAAL---KFPQPPALAFTDTIRMTMEAATSGIAEL--------AEMSGMGRRET 618

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
            +IK  T     T R  Y       P  F      NKH    +      RR++ + F   
Sbjct: 619 EEIKLWTTDTSDTYRAPYERRPFAHPRRFALIGTANKHETNHDATG--NRRFMPV-FVNR 675

Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE-----VCLKAKEEERQGT 690
             +                   W ++ ++ +         P+     +  +A    ++  
Sbjct: 676 PIDP-----------------NWHVEALQLFAEAKARFVEPDGEYARLVRRASALVKEYN 718

Query: 691 D 691
           D
Sbjct: 719 D 719


>gi|77405307|ref|ZP_00782403.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
 gi|77176102|gb|EAO78875.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
          Length = 765

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 12/114 (10%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284
            +  W+ V MA+ HE   +         WS+  S Y +     KWD+F     G      
Sbjct: 27  DYQTWVQVGMALKHEGYTA----MDWDVWSQSDSRYKKGECFAKWDSFQGNGFGTI---- 78

Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338
            T  ++                  DA+  +      +    Y    K W +  +
Sbjct: 79  -TGATITQLAKDNGWTSSEYRNSDDAHELSWDDTIDRD---YKIVDKNWIESKE 128


>gi|12597569|ref|NP_075153.1| helicase [Helicoverpa armigera nucleopolyhedrovirus G4]
 gi|12483835|gb|AAG53827.1|AF271059_84 helicase [Helicoverpa armigera nucleopolyhedrovirus G4]
 gi|14268753|gb|AAK57882.1|AF266701_2 helicase [Helicoverpa armigera NPV]
          Length = 1253

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 485  YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
                  G +L +  +  +  I++ G  GSGKS+  +L++           + +     + 
Sbjct: 938  LLMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTL--SKKE 995

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPA 602
             +  +AN  + +L           NE  E N +  K         +    Y     +  A
Sbjct: 996  TDEMEANKLISQLY--------VINELKECNDSFFKSTADSSKSNSVCRKY-QGSQKYEA 1046

Query: 603  SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
            ++   +V NK L + + D     R+ V+  D     
Sbjct: 1047 NYKLLVVNNKPLHISDYDRGVRNRFCVVYTDHEFLE 1082


>gi|123176399|ref|XP_001280001.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121831007|gb|EAX67071.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|167583159|ref|ZP_02376033.1| DNA primase [Burkholderia thailandensis TXDOH]
          Length = 950

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
              D W    MA+  E     +G  I   WS+    Y+  +    W +F   +I
Sbjct: 17  DDRDTWRQAGMALKAEF--GEEGFAIWNEWSQGAQNYNARDARDVWKSFKGGKI 68


>gi|123242124|ref|XP_001288168.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121856921|gb|EAX75238.1| hypothetical protein TVAG_331020 [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
                  +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNDFQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFVMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T                   +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------KSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKSL 179


>gi|309774710|ref|ZP_07669734.1| bifunctional DNA primase/polymerase, N- superfamily
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917610|gb|EFP63326.1| bifunctional DNA primase/polymerase, N- superfamily
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 499

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 68/243 (27%), Gaps = 28/243 (11%)

Query: 9   QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSE-KIDKLP---ACGFGFVCGVGEQP 64
            A        K+ PL++  K  Q L   +E+  + + +I K             G     
Sbjct: 7   YALTYAQVNCKVFPLKVNSKDGQTLTSLKEKATTDKKQITKWFTNTDYNVCVSTGE---G 63

Query: 65  LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124
           +   ++D++  K      + +       +            +++NKE      T  +   
Sbjct: 64  IIVIEVDAQ--KNGKEIIERYIKQFPITMTVRTPDGGWHFYYQVNKE----IDTQFNLYK 117

Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
            +++ G G + +      +    Y     P               +    +F  E     
Sbjct: 118 GINVYGNGSFVLGAGSQLENGNYYISINKP---------------IAKANEFIHEFLKGA 162

Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244
           + D +    S    +   +Q     I   L      F   S      + M + +     +
Sbjct: 163 INDFQVTWKSALEMSQLPQQENTDIIKQLLPVGVTLFGAPSKMGKTFLCMQLANAVAEGT 222

Query: 245 KGK 247
           +  
Sbjct: 223 EFL 225


>gi|15426395|ref|NP_203639.1| helicase [Helicoverpa armigera NPV]
 gi|15384471|gb|AAK96382.1|AF303045_124 helicase [Helicoverpa armigera NPV]
          Length = 1253

 Score = 51.8 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 13/156 (8%)

Query: 485  YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
                  G +L +  +  +  I++ G  GSGKS+  +L++           + +     + 
Sbjct: 938  LLMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTL--SKKE 995

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPA 602
             +  +AN  + +L           NE  E N +  K         +    Y     +  A
Sbjct: 996  TDEMEANKLISQLY--------VINELKECNDSFFKSTADSSKSNSVCRKY-QGSQKYEA 1046

Query: 603  SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
            ++   +V NK L + + D     R+ V+  D     
Sbjct: 1047 NYKLLVVNNKPLHISDYDRGVRNRFCVVYTDHEFLE 1082


>gi|332235632|ref|XP_003267010.1| PREDICTED: DNA-binding protein RFX7 [Nomascus leucogenys]
          Length = 1363

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 13  SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 68  RLGTRGKSKYCYSGLR-KKAF 87


>gi|327290873|ref|XP_003230146.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX7-like
           [Anolis carolinensis]
          Length = 1558

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 138 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 192

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 193 RLGTRGKSKYCYSGLR-KKAF 212


>gi|326926581|ref|XP_003209477.1| PREDICTED: DNA-binding protein RFX7-like [Meleagris gallopavo]
          Length = 1401

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 123 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 177

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 178 RLGTRGKSKYCYSGLR-KKAF 197


>gi|297696718|ref|XP_002825529.1| PREDICTED: DNA-binding protein RFX7-like [Pongo abelii]
          Length = 1363

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 13  SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 68  RLGTRGKSKYCYSGLR-KKAF 87


>gi|149636722|ref|XP_001514248.1| PREDICTED: similar to regulatory factor X domain containing 2
           homolog [Ornithorhynchus anatinus]
          Length = 1500

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 139 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 193

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 194 RLGTRGKSKYCYSGLR-KKAF 213


>gi|148233185|ref|NP_001090849.1| regulatory factor X, 7 [Xenopus (Silurana) tropicalis]
 gi|126632049|gb|AAI33721.1| rfx7 protein [Xenopus (Silurana) tropicalis]
          Length = 1439

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAF 184


>gi|126277186|ref|XP_001368345.1| PREDICTED: similar to regulatory factor X domain containing 2
           homolog [Monodelphis domestica]
          Length = 1455

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAF 184


>gi|118095718|ref|XP_429081.2| PREDICTED: similar to regulatory factor X domain containing 2
           homolog [Gallus gallus]
          Length = 1537

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 178 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 232

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 233 RLGTRGKSKYCYSGLR-KKAF 252


>gi|114657201|ref|XP_001171418.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 1281

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 13  SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 68  RLGTRGKSKYCYSGLR-KKAF 87


>gi|109081239|ref|XP_001090465.1| PREDICTED: DNA-binding protein RFX7 isoform 1 [Macaca mulatta]
          Length = 1280

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 13  SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 68  RLGTRGKSKYCYSGLR-KKAF 87


>gi|34535225|dbj|BAC87248.1| unnamed protein product [Homo sapiens]
          Length = 1281

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 13  SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 68  RLGTRGKSKYCYSGLR-KKAF 87


>gi|121946796|sp|Q2KHR2|RFX7_HUMAN RecName: Full=DNA-binding protein RFX7; AltName: Full=Regulatory
           factor X 7; AltName: Full=Regulatory factor X
           domain-containing protein 2
 gi|86577734|gb|AAI12937.1| Regulatory factor X, 7 [Homo sapiens]
          Length = 1363

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 13  SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67

Query: 755 KIEKEWKSKRIIKGLKLKPAF 775
           ++    KSK    GL+ K AF
Sbjct: 68  RLGTRGKSKYCYSGLR-KKAF 87


>gi|296214091|ref|XP_002807241.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX7-like
           [Callithrix jacchus]
          Length = 1444

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 6/96 (6%)

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
             A    R       +WI    +           +   Y  Y +   N     +S     
Sbjct: 95  QNAMSSSRAQQMHAFSWIRSTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151

Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
             +K       +K  ++    KSK    GL+ K AF
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184


>gi|150010082|ref|YP_001304825.1| hypothetical protein BDI_3502 [Parabacteroides distasonis ATCC
           8503]
 gi|149938506|gb|ABR45203.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 401

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 69/246 (28%), Gaps = 30/246 (12%)

Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478
           D    +L      DG   +      +P  + ++           +        LV   F 
Sbjct: 46  DYGKDYLATVPKYDGFCTVPNHVDYRPVVDKFLNLYEPIEHCPQQGEFPCIQSLVRHIFG 105

Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
            + E+ MDY        L    K    + +     +GKST +N +K  F      N    
Sbjct: 106 EQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKALF-----QNNVTF 157

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
           +  ++   +            G  ++++ E   N   ++ ++K ++           G  
Sbjct: 158 NTNEDFRSQFNS------DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKD 210

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653
             E        +  N        D    R      + + I      D  F QKL      
Sbjct: 211 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 264

Query: 654 EAKKWF 659
               + 
Sbjct: 265 AFLHFL 270


>gi|123203698|ref|XP_001284398.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121845793|gb|EAX71468.1| hypothetical protein TVAG_535260 [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y ++      +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISNFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +I++     +    +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE---YGYMPASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|253569515|ref|ZP_04846925.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251841534|gb|EES69615.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 396

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 89/304 (29%), Gaps = 49/304 (16%)

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
              + +   ++ +  +P  +    K    W N      +       K+   ++     F 
Sbjct: 4   EEYMRVGTTLYKVVNQPCASGGYEKRRVIWNN------STLRQDYGKNYLATVPKYDGFC 57

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
              D L+      G  +        + ++ T ++                     L+   
Sbjct: 58  TVPDHLNYRKEIDGFLN------LYEPIEHTPQIG-------------DFPNIRSLMLHI 98

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS-GKSTLMNLIKYAFGNQYVINAEA 535
           F   E  +     + +  L   +    + +     + GKST +N +K  FG+    N   
Sbjct: 99  FG--EQYNLGLDYLQLLFLQPLQKLPILLLVSEERNTGKSTFLNFLKAVFGDNVTFNTNE 156

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
               Q                 G  ++++ E   N   ++ ++K ++           G 
Sbjct: 157 DFRSQFN-----------SDWAGKLLIVVDEVLLNRREDSERLKNLSTTFNYKVEAK-GK 204

Query: 596 TYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYT 652
             +E        +  N      + +  +  +W R I      P+ + D +F QKL  +  
Sbjct: 205 DRTEISFFAKFVLCSNNEYLPVIIDAGETRYWVRKI-----NPLQDDDTNFLQKL-KEEI 258

Query: 653 LEAK 656
               
Sbjct: 259 PAFL 262


>gi|154417165|ref|XP_001581603.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121915832|gb|EAY20617.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPYT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+   +  +      SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFVSLDE----RSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKNL 179


>gi|283469593|emb|CAQ48804.1| virulence-associated E family protein [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283470738|emb|CAQ49949.1| virulence-associated E family protein [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 815

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL  +   +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KHYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQNKHTEES-PYTGIIDEYL 706


>gi|123235002|ref|XP_001286680.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121852658|gb|EAX73750.1| hypothetical protein TVAG_557710 [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+VI        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVIR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL   Y +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|118102235|ref|XP_423395.2| PREDICTED: similar to Selenium binding protein 1 [Gallus gallus]
          Length = 935

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
             E     +    WI +  +   +       +  +Y +Y +   N   + +S       +
Sbjct: 465 TAEYMHACN----WIRNHLEEHADTCLPKQDVYDAYRQYCD---NLCCRPLSAANFGKII 517

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
           ++      IK  ++    +SK    G++ K 
Sbjct: 518 RE--IFPNIKARRLGGRGQSKYCYSGIRRKT 546


>gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246]
          Length = 1454

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/182 (9%), Positives = 35/182 (19%), Gaps = 41/182 (22%)

Query: 7   KEQAKQAIHNGFKLIPLR----------------LGDKRPQRLGKWEEQLLSSEKIDKLP 50
            E   +    G+  +P+                     +      W     + E      
Sbjct: 5   AEAVARYRARGWCTVPVHRPDLDRGACSCGRPDCPKPGKHPDARFWPGGTAAPE---HFA 61

Query: 51  ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK-ILIPFRMN 109
               G   G     L   D+D  +   A         L        G+  +     + + 
Sbjct: 62  GRNVGVKLGPNSAGLADVDLDCGEAAVA------GPHLLPATNSAFGRGGETTHRLYAVT 115

Query: 110 K--EGIKKKKTT---ESTQGHLDILG------CGQ----YFVAYNIHPKTKKEYTWTTPP 154
                  K             +++         G+      V       + +   W    
Sbjct: 116 DRTAAFAKLLDPVRSGDRATIVELRWPEWDEAEGRFKHLQTVFPPSLHASGEGLEWARAG 175

Query: 155 HR 156
             
Sbjct: 176 EP 177


>gi|123320416|ref|XP_001293245.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121869838|gb|EAX80315.1| hypothetical protein TVAG_384930 [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFVMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMTAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKSL 179


>gi|123206191|ref|XP_001284861.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121847232|gb|EAX71931.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL  SY +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKSL 179


>gi|123318106|ref|XP_001292847.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121868901|gb|EAX79917.1| hypothetical protein TVAG_457630 [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.8 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +I++     +    +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123193646|ref|XP_001282874.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121841094|gb|EAX69944.1| hypothetical protein TVAG_500330 [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKNL 179


>gi|315652660|ref|ZP_07905637.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315485104|gb|EFU75509.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 2509

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/415 (10%), Positives = 106/415 (25%), Gaps = 28/415 (6%)

Query: 19  KLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76
             +P+ L  K  +      W       + + K    G GF  G         DID   ++
Sbjct: 35  TKMPIMLNGKPAKSNDKKTWNSYKDCMDALCKNQGTGLGFFLG---DGYIGIDIDKVSDE 91

Query: 77  TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ--GHLDILGCGQY 134
                 D          +R       + P +     I K K     +   +L+I    ++
Sbjct: 92  IMEYSIDLNAASMTADFLRGISTYAEISPSKTGLHFIGKGKVPGERKRYKNLEIYDRDRF 151

Query: 135 FVAYN-IHPKTKKEYTWTTPPHRFKV--EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
           F     I     +            +     P +   + +         ++         
Sbjct: 152 FTITGNILKDKDRSKIVNINQELLPLYKTYMPSIDSVEGKAGRINLIPSSLAYKNRFSQD 211

Query: 192 IPSKTWTNNNNRQYTNREITA-FLSCFGEEFYNGSHDEWIPVVMAVHHETR--------- 241
                  N     Y+  ++   +   +   F + S  ++  +   +++ +          
Sbjct: 212 DILNILFNRRYFNYSGEDLRQIYNGNYQNYFNSRSEADFFMLGRLLYYTSDVEKSISLME 271

Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301
            S   +    +  +  + Y     +   +        +  K   T  +          +G
Sbjct: 272 NSGLKRNKWYK-RRGSTDYIHYIADRAMNGIRKFYDWNKEKDNITKNAKQEETENKKKEG 330

Query: 302 LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
            +    ++  N  +                  + K   N Y +S        S      +
Sbjct: 331 KMPRYSTEKINDILSHSL--EEIRRDVSAYKDFLKTMGNNYKYSYMHQLSIYSTYKRATA 388

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
             E      +  +   ++ K            +++ +       +Q++  G+  +
Sbjct: 389 CAE-----YDFWKKLGRSVKRGEKGIPILDLSRSIPKVKYVFDVSQTVSIGNKIN 438


>gi|123184135|ref|XP_001281039.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121834741|gb|EAX68109.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|167835892|ref|ZP_02462775.1| hypothetical protein Bpse38_05335 [Burkholderia thailandensis
           MSMB43]
          Length = 950

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+ ++    W +
Sbjct: 5   ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFALWNEWSQGAQNYNAKDACDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|109521897|ref|YP_655334.1| gp57 [Mycobacterium phage Pipefish]
 gi|88910628|gb|ABD58554.1| gp57 [Mycobacterium phage Pipefish]
          Length = 871

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/361 (10%), Positives = 79/361 (21%), Gaps = 89/361 (24%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLG----------------------KW-------- 36
           +   ++A   G  L+ +    K+P  +                        W        
Sbjct: 27  RAFVREACKQGLALLLIHPQSKQPADMRTARQKNDADKAAQQAARDAGHRNWDKVKSPSG 86

Query: 37  -----EEQLLSSEKIDKL-----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE 86
                 +  +  + +D+      P         VG   L   D D+ ++           
Sbjct: 87  LALASSDAKVVLKYLDRYIKVHGPDVPVNLAIEVGASRLVVVDCDTPEQYAKFLEVSKAP 146

Query: 87  ILHGTPIVRIGQKPK-------------ILIPFRMNKEGIKKKKTTESTQGHLD----IL 129
                 ++  GQ  K                 +    EG++   +  +     +    +L
Sbjct: 147 AGTPATVMTPGQVGKGDSDDPDTWTHRDGGHFYFTLPEGVELPDSIGALTWGGEDGFAVL 206

Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189
              +Y +           Y  T   +         +    +E +          + + + 
Sbjct: 207 WNRRYVLIPPSTRPEG-AYELTGRDY--------EIPGWLLEKIVDAGNRRAERMAEQRT 257

Query: 190 SIIPSKTWTNNN-NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE 248
                +    +  +        +A L                      H   R  S G  
Sbjct: 258 RSGDDEDDLASAIDEWAETVPWSAILEPL---------------GWTPH--PRADSCGCP 300

Query: 249 IA----RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS-TFTSLFYHHGKLIPKGLL 303
           +        S + +T  +        T     +          F      HG      L 
Sbjct: 301 VWTGPGDHASPKSATAHDSGCALGRYTETNAPLHFWTDNPDPPFDKWCEKHGVKTISKLQ 360

Query: 304 A 304
           A
Sbjct: 361 A 361


>gi|307546784|ref|YP_003899263.1| hypothetical protein HELO_4194 [Halomonas elongata DSM 2581]
 gi|307218808|emb|CBV44078.1| hypothetical protein HELO_4194 [Halomonas elongata DSM 2581]
          Length = 485

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 96/341 (28%), Gaps = 35/341 (10%)

Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP----SQEFLD 471
             T          +  ++ + D            L +    G             +  L 
Sbjct: 105 RETFKEWQDHPWRMIAEEVVFDPAETV----DPRLSVNLYDGFKMEPDARGRAGCERILG 160

Query: 472 LVSGYFE-SEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLI-KYAFGNQ 528
            V       +E   +  + + + L   G K    + + G  G+GKS L   I K  +G  
Sbjct: 161 HVWRLCGYRQEEFFWLLKWMALPLQKPGTKMATAVLVHGSEGTGKSLLFEGILKRIYGEY 220

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
            +   +A    Q    ++ +   +L         ++S   +        +K +  G+ + 
Sbjct: 221 GITIGQAQLESQFTGWQSRRL-FALAE------EVVSRAEKAHYK--GVLKHVVTGEELQ 271

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-RDASFAQKL 647
                    SE       F+  +      +  D   RRY    F   + +     + + L
Sbjct: 272 INEKNMPLRSERNHVNFVFLSNSTVPLELDLGD---RRY----FVLHVEDVPPPEYFEAL 324

Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT-DTYQAWIDDC--CDIG 704
             +      + F + +                  AK+     +    + ++ +    D+G
Sbjct: 325 AEEIDQGGVECFYRYLLDLDLADYKPHTKPPLSDAKQRLIDSSLSPARFFVHEWRAGDLG 384

Query: 705 -ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
                     L K++  + E    +  K    R     + +
Sbjct: 385 LPYGVVAVADLWKAFLRWCENTNEFKTK---QRWFCDEVAR 422


>gi|167465881|ref|ZP_02330970.1| phage / plasmid primase, P4 family protein [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 90

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
            +P++  +   E  +  +   A+ID+     +   E +  +  SYS +  +      + +
Sbjct: 1   TMPDIIKRELAEYEKMNNPVMAFIDEG---RKVENETTKEVYLSYSAWCYENG---LRPL 54

Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
           S    +  + + GFI  +K    +   K  RI 
Sbjct: 55  SQIQFSREMCKHGFITKLK----KISGKPVRIF 83


>gi|149882954|ref|YP_001294891.1| DNA primase [Burkholderia phage BcepNY3]
 gi|148763605|gb|ABR10588.1| DNA primase [Burkholderia phage BcepNY3]
          Length = 824

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 62/241 (25%), Gaps = 40/241 (16%)

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA----LLGGNKAQRFIHIRGVGGSGKS 515
           +   +    F   +     S+ +               L  G        + G GG+GKS
Sbjct: 510 WDGTQRLDTFFVDLCDALPSDALTATTQLLFAGIVKRQLQPGAPLPVVPVLIGPGGTGKS 569

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
             +  +  A          A             A   +  L        +E +       
Sbjct: 570 YFVEQLAAAL---KFPQPPALAFTDTIRMTMEAATSGIAEL--------AEMSGMGRRET 618

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
            +IK  T     T R  Y    S  P  F      NKH    +      RR++ + F   
Sbjct: 619 EEIKLWTTDTSDTYRAPYERRPSAHPRRFALIGTANKHETNHDATG--NRRFMPV-FVNR 675

Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE-----VCLKAKEEERQGT 690
             +                   W ++ ++ +         P+     +  +A    ++  
Sbjct: 676 PIDP-----------------NWHVEALQLFAEAKARFVEPDGEYARLVRRASALVKEYN 718

Query: 691 D 691
           D
Sbjct: 719 D 719


>gi|123237972|ref|XP_001287273.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121854403|gb|EAX74343.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 211

 Score = 51.4 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
           GK N S+  +       +   +    +N+  +K +           Y +       +   
Sbjct: 9   GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
            +  N         D   RRY+V+        +D  +   L    T +            
Sbjct: 69  MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTL 124

Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720
                +   IP    + ++   +   +    +ID    +C D          SL  SY +
Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174

Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
           Y ++   Y     S RT   N+K  
Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196


>gi|222148720|ref|YP_002549677.1| Prophage antirepressor protein [Agrobacterium vitis S4]
 gi|221735706|gb|ACM36669.1| Prophage antirepressor protein [Agrobacterium vitis S4]
          Length = 263

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 11/120 (9%)

Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
              +   GL +   E   K + + +        +ID+C    +        + + Y ++ 
Sbjct: 155 AALWRELGLPMPKDETSDKERRQAQGLMKYVYDFIDECMVFDQKAEVTGKEVYQRYQQWS 214

Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782
                     I   +    L + G         +++   +     G++LK   +  D +S
Sbjct: 215 ATNNA---PYIMNSSFGRFLIRAGI--------VKRHVSTGSRYIGVRLKHHIQITDQSS 263


>gi|47842852|ref|NP_958158.2| gp51 [Burkholderia phage Bcep43]
 gi|47719040|gb|AAR89344.2| gp51 [Burkholderia phage Bcep43]
          Length = 873

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 62/241 (25%), Gaps = 40/241 (16%)

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA----LLGGNKAQRFIHIRGVGGSGKS 515
           +   +    F   +     S+ +               L  G        + G GG+GKS
Sbjct: 559 WDGTQRLDTFFVDLCDALPSDALTATTQLLFAGIVKRQLQPGAPLPVVPVLIGPGGTGKS 618

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
             +  +  A          A             A   +  L        +E +       
Sbjct: 619 YFVEQLAAAL---KFPQPPALAFTDTIRMTMEAATSGIAEL--------AEMSGMGRRET 667

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
            +IK  T     T R  Y    S  P  F      NKH    +      RR++ + F   
Sbjct: 668 EEIKLWTTDTSDTYRAPYERRPSAHPRRFALIGTANKHETNHDATG--NRRFMPV-FVNR 724

Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE-----VCLKAKEEERQGT 690
             +                   W ++ ++ +         P+     +  +A    ++  
Sbjct: 725 PIDP-----------------NWHVEALQLFAEAKTRFVEPDGEYARLVRRASALVKEYN 767

Query: 691 D 691
           D
Sbjct: 768 D 768


>gi|23752361|ref|NP_705675.1| gp52 [Burkholderia phage Bcep781]
 gi|23507228|gb|AAN38051.1| gp52 [Burkholderia phage Bcep781]
          Length = 873

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 62/241 (25%), Gaps = 40/241 (16%)

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA----LLGGNKAQRFIHIRGVGGSGKS 515
           +   +    F   +     S+ +               L  G        + G GG+GKS
Sbjct: 559 WDGTQRLDTFFVDLCDALPSDALTATTQLLFAGIVKRQLQPGAPLPVVPVLIGPGGTGKS 618

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
             +  +  A          A             A   +  L        +E +       
Sbjct: 619 YFVEQLAAAL---KFPQPPALAFTDTIRMTMEAATSGIAEL--------AEMSGMGRRET 667

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
            +IK  T     T R  Y    S  P  F      NKH    +      RR++ + F   
Sbjct: 668 EEIKLWTTDTSDTYRAPYERRPSAHPRRFALIGTANKHETNHDATG--NRRFMPV-FVNR 724

Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE-----VCLKAKEEERQGT 690
             +                   W ++ ++ +         P+     +  +A    ++  
Sbjct: 725 PIDP-----------------NWHVEALQLFAEAKTRFVEPDGEYARLVRRASALVKEYN 767

Query: 691 D 691
           D
Sbjct: 768 D 768


>gi|170016447|ref|YP_001727366.1| prophage Lp3 protein 7-like protein [Leuconostoc citreum KM20]
 gi|169803304|gb|ACA81922.1| prophage Lp3 protein 7-like protein [Leuconostoc citreum KM20]
          Length = 256

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 42/184 (22%), Gaps = 22/184 (11%)

Query: 25  LGDKRPQRLGKWEEQLLSSEKIDKL-------PACGFGFVCGVGEQPLYAFDIDSKDEKT 77
              K     G +     + +++ +             G         L   DID      
Sbjct: 4   PNQKHNAVSGGYNNSFNNGDELSQWINSHPEYQDRNVGIDL--SRSNLIVVDIDKHKHNG 61

Query: 78  ANTFKDTFEILHGTP------IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
             +    F+     P       V       +   + + +   K  +   + QG +D+L  
Sbjct: 62  MKSISAWFKSHDINPETIQDTYVERTASGGLHAFYLIPEGKTKPAEKVSALQG-VDLLTN 120

Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
               +        ++ Y           E      E   +         T    K  +  
Sbjct: 121 KHGVIVAPSVI-NQQPYR-----AITPFETIQQAPEWVYQIANNRGSTNTPSNHKATRYS 174

Query: 192 IPSK 195
              +
Sbjct: 175 NIDR 178


>gi|209978844|ref|YP_002300587.1| helicase [Adoxophyes orana nucleopolyhedrovirus]
 gi|192758826|gb|ACF05361.1| helicase [Adoxophyes orana nucleopolyhedrovirus]
          Length = 1208

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 98/341 (28%), Gaps = 35/341 (10%)

Query: 317  SIYKKGHFL---YTADTKAWYKKDKNNVYIWSLTLDKITA-----SIMNFLVSMKEDVFD 368
            SIY K            K++YK  K   Y +      I          N +  + +++ +
Sbjct: 714  SIYYKNFICMVATNKKEKSFYKYKKYAEYFFQNKYKIIDFLTDKFKYTNCITDLIDEISN 773

Query: 369  LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA-----QSLEAGSIFSITSDLLD 423
              E  +      +        D    N    +K    +     +  ++    +  +   D
Sbjct: 774  PYEFLKQIEDYVECNDDHAADDDDDDNNNIGNKMSEVSVNFWHEYCQSNYYITHYNIWWD 833

Query: 424  SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG--YFESEE 481
                 + + D  L+       +    + + K     +      +     ++         
Sbjct: 834  K--LLIAKPDDTLN---EWCSRFYSRVILNKFDLKNYPTLFVQKIVAAYINFKVMTGFNA 888

Query: 482  VMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
            V          +L +  +  +  I++ G  GSGKST   L++         + +   I  
Sbjct: 889  VNSRVLSYFAASLAIPSDYDKFCIYLNGTPGSGKSTFYELLETFLVVHKHDSDQYKLIKD 948

Query: 541  NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK--QMTGGDCMTARLNYGNTYS 598
                            +   I  +   NE    N +  K    +       R  +G+   
Sbjct: 949  QTNDIE----------VDKLISQLYVINEMKVCNDSFFKTNSDSTKSNSVCRKYHGSQKY 998

Query: 599  ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
            E   ++   I+ NK L + + D     R+ +I  D      
Sbjct: 999  E--GNYKMMIINNKPLHIIDYDKGVRNRFGIIYTDHKFEED 1037


>gi|123203170|ref|XP_001284266.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121845397|gb|EAX71336.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 15/184 (8%)

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
           +   +    +N+  +K +           Y +       +    +  N         D  
Sbjct: 9   LQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD-- 66

Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKA 682
            RRY+V+        +D  +   L    T +                 +   IP    + 
Sbjct: 67  -RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EE 122

Query: 683 KEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
           ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT   N
Sbjct: 123 RQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTFLAN 175

Query: 742 LKQK 745
           +K  
Sbjct: 176 VKSL 179


>gi|114679948|ref|YP_758398.1| helicase [Leucania separata nuclear polyhedrosis virus]
 gi|39598679|gb|AAR28865.1| helicase [Leucania separata nuclear polyhedrosis virus]
          Length = 1251

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 12/156 (7%)

Query: 485  YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                      +  +  +  I++ G    GKS+  +L+             A      +  
Sbjct: 942  LMMHFTASLAIPNDYEKLCIYLNGESNCGKSSFFDLLDTII--VAHKRDSAVYNTTKKET 999

Query: 545  EAGKANPSLIRLMGSRIVIISETNENDEINAAKIK-QMTGGDCMTARLNYGNTYSESPAS 603
            +  +AN  + +L           NE  E N A  K         +    Y  +  +  A+
Sbjct: 1000 DEMEANKLISQLY--------VINEMKECNDAFFKNSADSSKSNSVCRKYEGSQ-KYEAN 1050

Query: 604  FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
            +   IV NK L +R+ D     R+ V+         
Sbjct: 1051 YKLLIVNNKPLCIRDYDKGVRNRFCVVYMKHVFVEN 1086


>gi|123167478|ref|XP_001279308.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121828534|gb|EAX66378.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
                  +    +N+  +K +           Y ++      +    +  N         
Sbjct: 6   CNEFQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T E                 +   IP   
Sbjct: 66  D---RRYVVVR-KSDSHMQDTEYFDALSEYLTPEFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    ++D+     + +  +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|300120062|emb|CBK19616.2| unnamed protein product [Blastocystis hominis]
          Length = 844

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 106/367 (28%), Gaps = 71/367 (19%)

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
              +           + E +  + +E            +    + + + + ++  + +  
Sbjct: 168 ARIEKATKENERKYFLHEQLKAIQKEMGG--DKDPKQNYLNMVNAKLEQMRKDHVSPAAI 225

Query: 407 QSLEAGS----IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
            ++E          I     D++  ++                             P+ +
Sbjct: 226 AAVEEEVQRLSFIDIQHAEFDTTQNYIN-----------------------WVINLPWTQ 262

Query: 463 GEPSQEFLDLVSGYFES-----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
               Q  +              ++V D     + +  L G+ A + +   G  G+GK+++
Sbjct: 263 HSEDQMNIQYAQQVLNDDHYGLKDVKDRILEFIAVGKLQGHIAGKVLCFVGPPGTGKTSI 322

Query: 518 MNLIKYAFGNQYV-----INAEASDIMQNRPPEAGKANPSLIRLMGSRIVI--ISETNEN 570
              I  A G +Y         + + I  +R    G     +I  M    V   +   +E 
Sbjct: 323 AKSIARALGREYCQFSVGGANDVAQIKGHRRTYIGSLPGKIIWCMKKAKVNNPLILIDEV 382

Query: 571 DEINAAKIKQMTG-----GDCMTA--RLNYGNTYSESPASF--TPFIVPNKHLFVRNPDD 621
           D+I+A++    T      GD  +A   +   N   E   ++   PF + N        D 
Sbjct: 383 DKISASRNVGFTDGRKEQGDPASALLEVLDPNQNKEFLDTYLDIPFDLSNVLFICTANDL 442

Query: 622 A-----WWRRYIVI-----------PFDKPIANRDASF-----AQKLETKYTLEAKKWFL 660
           +        R  VI              K   ++          ++  T  +L      L
Sbjct: 443 STVPQPLLDRMEVIRVSGYDYQEKLEISKRFLDKKVRIATGLEPERPTTPKSLAIADDAL 502

Query: 661 KGVKAYI 667
           + +  + 
Sbjct: 503 QSLIRWY 509


>gi|123232440|ref|XP_001286379.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121851780|gb|EAX73449.1| hypothetical protein TVAG_170960 [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDEKSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|123181948|ref|XP_001280563.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121833030|gb|EAX67633.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 181

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 15/177 (8%)

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             +N+  +K +           Y +       +    +  N         D   RRY+V+
Sbjct: 3   KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 59

Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689
                   +D  +   L    T +                 +   IP    + ++   + 
Sbjct: 60  R-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEA 116

Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
             +    +ID+     + +  +  SL  SY +Y ++   Y     S RT   N+K  
Sbjct: 117 NKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 166


>gi|162135108|ref|YP_001595849.1| hypothetical protein [Pseudomonas phage YuA]
 gi|161513955|emb|CAO77781.1| hypothetical protein [Pseudomonas phage YuA]
          Length = 803

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 92/301 (30%), Gaps = 28/301 (9%)

Query: 457 GTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVG-MALLGGNKAQRFIHIRGVGGSG 513
               + GE    FL+ +       + E   Y    +  M        +  + +RG  G+G
Sbjct: 442 ACDSLPGEKHLPFLNHIRDNVCSGNPEHFHYLVGWMARMVQHPDGPGEVAVVLRGRRGTG 501

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KS    ++   FG  Y+  +++  ++ +            + L G            D+ 
Sbjct: 502 KSFFAKVLGAMFGRHYLQVSDSKHLVGSF----NAHLRDTVLLFGDEAFFA-----GDKK 552

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIPF 632
           + + +K +   + +       +  +  P      +  N+   V    D+   RR+ V+  
Sbjct: 553 HESVLKTLVTEEHLVIEGKGVDAEAA-PNYVHLVLASNEDWVVPAGLDE---RRFFVMEV 608

Query: 633 DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
            +    +D ++ ++++        +  L  +  Y     +V         ++++      
Sbjct: 609 GEG-HKQDHAYFKRIKDDLDNGGLEHLLHFLLTYDLSNYEVRQVPQTRALQDQKIMSMSP 667

Query: 693 YQAWIDDCC--------DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
              W+ +          D          SL   Y      +    R  +S       L +
Sbjct: 668 ETQWMYEKLWEGRLLKTDQDWRNKVVKDSLYDDYVNDLRDQGRNFR--MSRTGFGKFLSR 725

Query: 745 K 745
            
Sbjct: 726 A 726


>gi|288904658|ref|YP_003429879.1| hypothetical protein GALLO_0442 [Streptococcus gallolyticus UCN34]
 gi|288731383|emb|CBI12934.1| hypothetical protein, phage associated [Streptococcus gallolyticus
           UCN34]
          Length = 757

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 17/142 (11%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284
            +  W  + MA+ HE             WS+  + Y +     KW TF+  E   +    
Sbjct: 21  DYSTWCQIGMALKHE----GYTAMDWDNWSQADTRYKKGECFKKWTTFN--EEAGSVVTG 74

Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344
           +T T L   +G               +   +   Y           K W +  +      
Sbjct: 75  ATITQLAKDNGWQPASNGRGDSHELDWEDTIDRDY-------QIVDKNWIESKEIREP-- 125

Query: 345 SLTLDKITASIMNFLVSMKEDV 366
                +    ++ +L ++ +  
Sbjct: 126 --LNWQPAQELIKYLETLFDST 145


>gi|123420351|ref|XP_001305741.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121887278|gb|EAX92811.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.4 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSEAHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|225076709|ref|ZP_03719908.1| hypothetical protein NEIFLAOT_01760 [Neisseria flavescens
           NRL30031/H210]
 gi|224951985|gb|EEG33194.1| hypothetical protein NEIFLAOT_01760 [Neisseria flavescens
           NRL30031/H210]
          Length = 868

 Score = 51.4 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 73/537 (13%), Positives = 130/537 (24%), Gaps = 115/537 (21%)

Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIY-----KKGHFLY 326
           F   E  D    R T  +       +     +   + +     + ++Y     KK + L 
Sbjct: 345 FGLVEGKDHGVNRKTGVTYTRKAMTVHFGKDVVDAWYEWGRAPVLTMYEINRLKKDYALI 404

Query: 327 TADTK-------AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379
            A            +     +  IW   L ++       L    +        P    K 
Sbjct: 405 QAVKNDDTQDMMERFIYLDGSASIWDNKLWRVVPEKAARLSMTPDGFKIWVNSPSRIVKR 464

Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439
                F          +            +E                             
Sbjct: 465 FDRLVFEPGRVLSDDYINIFRGMP-----IEPKFPI------------------------ 495

Query: 440 TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLG-G 497
                    +  + K+    +      +  L+L++       + ++Y    +   L   G
Sbjct: 496 --------PKEDMPKTNYELYRLFPEIKPILNLINHLCNGDYQQVEYILNWLAYPLQNVG 547

Query: 498 NKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
            K    + + G   G+GKS     I      +Y       D+  N               
Sbjct: 548 AKMTTAVVMHGHIHGAGKSFFFEEIVKPMYGEYGATYGQEDLESNYTANRS--------- 598

Query: 557 MGSRIVIIS--ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
            G    I     TN+         K M  G  M     + + Y E+      F+      
Sbjct: 599 -GKMFGIFEEVYTNQQKYNKTGSQKHMITGKTMRVERKFQDAYEEANHMNCVFLSNESQP 657

Query: 615 -FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG--- 670
             +   D    RRY V+  +K +                +     FL     Y++ G   
Sbjct: 658 FKIEEND----RRYFVVWPEKKLDKALRDEVLDCIGNDGVRLFYSFLLCWNFYLTYGQQE 713

Query: 671 -----------------LDVDIPEVCLKAKE--------EERQGTDTYQAW----IDD-- 699
                             D + P     AK+          +     Y  W    I D  
Sbjct: 714 TENEKRYEVIKLEEPVRFDPNTPPPMTAAKQNVISYGRYAWQT---FYSEWAGGGIKDLP 770

Query: 700 -CCDIGENLWEESHSLAKSYSEYREQELNYDR-KRISTRTVTLNLKQKGFIGGIKRE 754
            CC I ++LW         Y E+  Q    +  K    + +   + +       K +
Sbjct: 771 FCCCITDDLWL-------VYKEWCRQNGERETGKTKFLQHIAEKMPRARRWWRTKNK 820


>gi|123154109|ref|XP_001277956.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121823446|gb|EAX65026.1| hypothetical protein TVAG_595080 [Trichomonas vaginalis G3]
          Length = 181

 Score = 51.4 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 15/177 (8%)

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             +N+  +K +           Y +       +    +  N         D   RRY+V+
Sbjct: 3   KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 59

Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689
                   +D  +   L    T +                 +   IP    +A++   + 
Sbjct: 60  R-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--HTEARQTLLEA 116

Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
             +    +I++     +    +  SL   Y +Y ++   Y     S RT   N+K  
Sbjct: 117 NKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE---YGYMAASKRTFLANVKSL 166


>gi|238800245|gb|ABX56067.2| E1 [Macaca fascicularis papillomavirus type 3]
          Length = 627

 Score = 51.4 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 67/205 (32%), Gaps = 36/205 (17%)

Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
            +G   +  +  +   +++ E + +        L G  K    I + G   +GKS     
Sbjct: 412 DDGGDWRPIVQFLR--YQNVEFITFL-SAFKAFLKGIPKRS-CIVLYGPPNTGKS----- 462

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE--TNENDEINAAKI 578
                   + ++                ++  L  L  +++ ++ +        I+   +
Sbjct: 463 -------YFGMSLMQFLQGSIISYVNSNSHFWLAPLAEAKVAMLDDATPQCWSYIDT-YM 514

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR----RYIVIPFDK 634
           + +  G+ M+    + N          P I+ +    V   D   WR    R +V  F++
Sbjct: 515 RSVLDGNPMSIDRKHKNL---IQMKCPPLIITSNT-NVGEDDR--WRYLHSRVVVFKFEQ 568

Query: 635 PIA-NRDASFAQKLETKYTLEAKKW 658
               +++ +   +L  K       W
Sbjct: 569 TFPFDQNGNPVYELSDK------NW 587


>gi|307566128|ref|ZP_07628586.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
 gi|307345316|gb|EFN90695.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
          Length = 396

 Score = 51.4 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 27/233 (11%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489
           DG   +      +P  + ++           E        L+   F  + E+ MDY    
Sbjct: 54  DGFCTVPNHVNYQPVIDKFLNLYEPIGHQPKEGEFLHIESLIRHIFGEQYELGMDYLQLL 113

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
               L    K    + +     +GKST +N +K  F N    N       Q         
Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFQNNVTFNTNEDFRSQFN------- 163

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                   G  ++++ E   N   ++ ++K ++           G    E        + 
Sbjct: 164 ----ADWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218

Query: 610 PNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
            N      + +  +  +W R I       + + D  F QKL          + 
Sbjct: 219 SNNELLPVIIDMGETRYWVRKI-----NRLESDDTDFLQKL-KAEIPAFLYFL 265


>gi|123239155|ref|XP_001287546.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121855163|gb|EAX74616.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.0 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAEILTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    ++D+     + +  +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFVDE----TDFVSLDEKSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|313668169|ref|YP_004048453.1| hypothetical protein NLA_8370 [Neisseria lactamica ST-640]
 gi|313005631|emb|CBN87071.1| hypothetical protein NLA_8370 [Neisseria lactamica 020-06]
          Length = 162

 Score = 51.0 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 14/98 (14%)

Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
            EI A LS  G +      D WI +  AV  E      G  +   WS+ G +Y+  +   
Sbjct: 5   DEIRAALSHIGAD----DRDMWIRMGEAVKDEI--GEDGFHLWDEWSQTGGSYNARDAKA 58

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS 305
            W +F             +  +LF+H  +   +     
Sbjct: 59  AWKSF--------KPGHISIGTLFHHARQNGWRPEKPY 88


>gi|123359290|ref|XP_001295770.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121874889|gb|EAX82840.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.0 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y ++      +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|190404525|ref|YP_001965289.1| N-terminal primase-polymerase (primpol)-domain containing protein
           [Amycolatopsis mediterranei]
 gi|300782291|ref|YP_003762582.1| hypothetical protein AMED_0358 [Amycolatopsis mediterranei U32]
 gi|161087211|gb|ABX56700.1| N-terminal primase-polymerase (primpol)-domain containing protein
           [Amycolatopsis mediterranei]
 gi|299791805|gb|ADJ42180.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 318

 Score = 51.0 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 47/226 (20%), Gaps = 49/226 (21%)

Query: 12  QAIHNGFKLIPLRLGDK---------------------RPQRLGKWEEQLLSSEKIDKLP 50
           +    G+K+ P R G K                      P+ L    +    + +     
Sbjct: 16  EMAGRGWKVFPCRPGSKAALWHRQEHCRGGGVCADGHVTPESLAT-SDVERVAARWSDGV 74

Query: 51  ACGFGFVCGVGEQPLYAFDIDSK--------------DEKTANTFKDTFEILHGTPIVRI 96
           A       G     L+  D D                D       +       G      
Sbjct: 75  AYNIAVYPGP--SGLFILDCDIPKAARPGQPPARGEHDPDGWTQLQALAGQRGGPLPDTF 132

Query: 97  ---GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP 153
                     + F     G   + T +    ++D  G G Y +A                
Sbjct: 133 TLATPSGGRQLWFTAPP-GTLLRGTVKHVATNIDSRGWGTYGLAPGCVLLNGAY------ 185

Query: 154 PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199
                  D   L    V+   +          +   +   + T   
Sbjct: 186 -ELIDDTDPVELPGWLVQANVERASGAISGRPEKPVAAPDAYTARA 230


>gi|227544802|ref|ZP_03974851.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|300908952|ref|ZP_07126415.1| conserved hypothetical protein [Lactobacillus reuteri SD2112]
 gi|227185235|gb|EEI65306.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
 gi|300894359|gb|EFK87717.1| conserved hypothetical protein [Lactobacillus reuteri SD2112]
          Length = 978

 Score = 51.0 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 59/496 (11%), Positives = 134/496 (27%), Gaps = 78/496 (15%)

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA-----DTKAWYKKDKNNVYIWS 345
            + +        +  + +DA  K  FS       +Y               ++++VY   
Sbjct: 452 VWANENSRDPNTIIKKLNDALVKDRFSNLSIADKVYNDPATILVDNQLMALNEHHVYTAD 511

Query: 346 LTL------DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
                      I AS   F+ + + +V++L    +  N         F ++ +   ++  
Sbjct: 512 SKAVNSIIDKYIDASGKRFIRNSRNNVYELLNNNKYKNG---KLDIGFKSENQTIWIDNK 568

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
                     + G+  ++     ++       ++     +    +    + Y  + T   
Sbjct: 569 GVHTENPLLKKVGNYVNVDYINYEADKDLFNSEEY---SQVEAFLTHISDGYYRQIT--- 622

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
                     L L+    +   ++    R                 + GV GSGK+ L  
Sbjct: 623 --------CMLALI--VLQDPNIVPTLRRA--------------FILYGVPGSGKTVLAK 658

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL----MGSRIVIISETNENDEINA 575
           L+   F         +  +           +P+LI       G  ++   +   +   N 
Sbjct: 659 LLCKIFDEPNR---PSRILCSEPNINKVFTDPNLIDANDTKKGKLVLWFDDFQSDGRSNE 715

Query: 576 ------AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
                   I  +T  +  T    +   Y +        +  N    ++        R  V
Sbjct: 716 IKRNVGTVINAVTSNEAKTGAAKFQQ-YHDIKLPSLIVLSTNDVPQIK--HIGTVDRIFV 772

Query: 630 IPFDKPIANR---------DASFAQKLETKYTL-EAKKWFLKGVKAYISKGLDVDIPEVC 679
           I   K + +          DA    K   +          +  +     +     I +  
Sbjct: 773 IKSSKRLTDDPNISFSSNIDAWINNKKVQEAFFCIILNTAVDILNMSKDE--AKSIFDKS 830

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWE--ESHSLAKSYSEYREQELNYDRKRISTRT 737
             A+        + +A+ ++            ++  L   Y E    E N+     + R 
Sbjct: 831 NSAQSALSNLNSSIEAFFEEQNITSLYDLVGMQAKKLFDVYLE---GEKNFA-YATTYRA 886

Query: 738 VTLNLKQKGFIGGIKR 753
               ++  G     K 
Sbjct: 887 FCDQIEGLGLNLRRKH 902


>gi|218131557|ref|ZP_03460361.1| hypothetical protein BACEGG_03177 [Bacteroides eggerthii DSM 20697]
 gi|217986489|gb|EEC52826.1| hypothetical protein BACEGG_03177 [Bacteroides eggerthii DSM 20697]
          Length = 334

 Score = 51.0 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 67/237 (28%), Gaps = 24/237 (10%)

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIV------RIGQKPKILIPFRMNKEGIKKKK 117
            L   DID KD  + +  +D    L   P +        G     +IP+          +
Sbjct: 87  NLICIDIDGKDNPSISNIEDLKIKLGELPYIMYCGLSASGNGLFCIIPYADPTNHKNVFE 146

Query: 118 TTESTQGHLDILGCGQYFVAY---NIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
           + ++    + I+             +   T + Y              P     +  Y  
Sbjct: 147 SIKNDFEEMGIIIDKSCGDICRLRFLSHDT-QPYVNKHAEVYM---SEPKSKAVEYIYKP 202

Query: 175 KFFQEITVPLVKDKKSII-------PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH- 226
           K   +   P  +             PS     +       +++   LS       + ++ 
Sbjct: 203 KQRSKTKPPKPQTILIPSVIETFLRPSNLVLESATPLTKKQKVERLLSEITRNQVDITYY 262

Query: 227 -DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282
            ++WI +   + +      +G+ +  + S     YD +  + ++           + 
Sbjct: 263 YNDWIAIGNIIKNMF--GEEGRALFHKVSSFYPNYDYDETDREYSAMIIGRYRYNSD 317


>gi|323340042|ref|ZP_08080308.1| RecA-family ATPase [Lactobacillus ruminis ATCC 25644]
 gi|323092548|gb|EFZ35154.1| RecA-family ATPase [Lactobacillus ruminis ATCC 25644]
          Length = 769

 Score = 51.0 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEE---IGDT 280
            ++ W+ V MA+ HE        +    WS++  + Y +     KW+ FD +     G T
Sbjct: 19  DYNGWVQVGMALKHE----GYSVDDWDTWSQRDSARYHDGECERKWNGFDDDGQIVTGAT 74

Query: 281 AKKRSTFTSLFYHHGKLIPKGLL---ASRFSDAYNKAMFSIYK 320
             K +        H K   + +    A    + Y   +   YK
Sbjct: 75  ITKMAKDGGWTSAHSKENQQTMGWDDAVEAEERYTPTIDKDYK 117


>gi|222435726|ref|YP_002564154.1| gp56 [Mycobacterium phage Phlyer]
 gi|222088279|gb|ACM42220.1| gp56 [Mycobacterium phage Phlyer]
          Length = 867

 Score = 51.0 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/361 (10%), Positives = 79/361 (21%), Gaps = 89/361 (24%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLG----------------------KW-------- 36
           +   ++A   G  L+ +    K+P  +                        W        
Sbjct: 24  RAFVREACKQGLALLLIHPQSKQPADMRTVRQKNAADKAAQQAAREAGRRNWDKVKSPSG 83

Query: 37  -----EEQLLSSEKIDKL-----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE 86
                 +  +  + +D+      P         VG   L   D D+ ++           
Sbjct: 84  LALASSDAKVVLKYLDRYIEVHGPDVPVNLAIEVGASRLVVVDCDTPEQYAKFLEVSKAP 143

Query: 87  ILHGTPIVRIGQKPK-------------ILIPFRMNKEGIKKKKTTESTQGHLD----IL 129
                 ++  GQ  K                 +    EG++   +  +     +    +L
Sbjct: 144 AGTPATVMTPGQVGKGDSDDPDTWTHRDGGHFYFTLPEGVELPDSIGALTWGGEDGFAVL 203

Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189
              +Y +           Y  T   +         +    +E +          + + + 
Sbjct: 204 WNRRYVLIPPSTRPEG-AYELTGRDY--------EIPGWLLETIVDAGNRRAERMAEQRT 254

Query: 190 SIIPSKTWTNNN-NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE 248
                +    +  +        +A L                      H   R  S G  
Sbjct: 255 RSGDDEDDLASAIDEWAETVPWSAILEPL---------------GWTPH--PRADSCGCP 297

Query: 249 IA----RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS-TFTSLFYHHGKLIPKGLL 303
           +        S + +T  +        T     +          F      HG      L 
Sbjct: 298 VWTGPGDHASPKSATAHDSGCALGRYTETNAPLHFWTDNPDPPFDEWCEKHGVKTISKLQ 357

Query: 304 A 304
           A
Sbjct: 358 A 358


>gi|73542996|ref|YP_297516.1| hypothetical protein Reut_A3313 [Ralstonia eutropha JMP134]
 gi|72120409|gb|AAZ62672.1| hypothetical protein Reut_A3313 [Ralstonia eutropha JMP134]
          Length = 444

 Score = 51.0 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 99/313 (31%), Gaps = 47/313 (15%)

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           F       F ++       + +         +    + +    G+GK  L+  I     +
Sbjct: 143 FHAYFERMFPAKHQRHIVLQWLAHIFRRPDQRPSWHLMLLSEPGTGKGFLVQNILQPLLH 202

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
              + A  S I                 L+ + ++++ +     E    ++K     +  
Sbjct: 203 HTSVVASYSRITGKHS----------AVLVENLVILLDDCKSRSEATQTEMKSFLSEERA 252

Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV-------IPFDKPIANRD 640
                Y +   E   +        +     +P++   RR+ +       +   +  AN  
Sbjct: 253 LVERKYASAGMEDTYARMILASNEEIPLYVDPNE---RRWYIPDDVVHLVDLRETQANII 309

Query: 641 ASFAQKLETKYTL-EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
              A  L+   +L +   WF++           V   E   +  ++ +     Y+ +I+D
Sbjct: 310 QPLADWLDEPGSLCKVYNWFMQYPLDGF-NHKSVPESEGLTRLIDKSKG---PYRQYIED 365

Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
                   + + + +   Y++  E   +    + S R +   L++ G+    +R      
Sbjct: 366 --------YVKDNKVFT-YADLVESMTDAKLSKPSDRELGHVLREIGYEATQRR------ 410

Query: 760 WKSKRIIKGLKLK 772
                 I G++L+
Sbjct: 411 ------IDGVRLR 417


>gi|123193985|ref|XP_001282953.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121841354|gb|EAX70023.1| hypothetical protein TVAG_557430 [Trichomonas vaginalis G3]
          Length = 194

 Score = 51.0 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL   Y +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMTAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKSL 179


>gi|194303249|ref|YP_002014663.1| gp52 [Mycobacterium phage Phaedrus]
 gi|194150981|gb|ACF34016.1| gp52 [Mycobacterium phage Phaedrus]
          Length = 868

 Score = 51.0 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/361 (9%), Positives = 79/361 (21%), Gaps = 89/361 (24%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLG----------------------KW-------- 36
           +   ++A   G  L+ +    K+P  +                        W        
Sbjct: 24  RAFVREACKQGLALLLIHPQSKQPADMRTVRQKNAADKAAQQAAREAGRRNWDKVKSPSG 83

Query: 37  -----EEQLLSSEKIDKL-----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE 86
                 +  +  + +D+      P         VG   L   D D+ ++           
Sbjct: 84  LALASSDAKVVLKYLDRYIEVHGPDVPVNLAIEVGASRLVVVDCDTPEQYAKFLEVSKAP 143

Query: 87  ILHGTPIVRIGQKPK-------------ILIPFRMNKEGIKKKKTTESTQGHLD----IL 129
                 ++  GQ  K                 +    EG++   +  +     +    +L
Sbjct: 144 AGTPATVMTPGQVGKGDSDDPDTWTHRDGGHFYFTLPEGVELPDSIGALTWGGEDGFAVL 203

Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189
              +Y +           Y  T   +         +    ++ +          + + + 
Sbjct: 204 WNRRYVLIPPSTRPEG-AYELTGRDY--------EIPGWLLDKIVDAGNRRAERMAEQRT 254

Query: 190 SIIPSKTWTNNN-NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE 248
                +    +  +        +A L                      H   R  S G  
Sbjct: 255 RSGDDEDDLASAIDEWAETVPWSAILEPL---------------GWTPH--PRADSCGCP 297

Query: 249 IA----RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS-TFTSLFYHHGKLIPKGLL 303
           +        S + +T  +        T     +          F      HG      L 
Sbjct: 298 VWTGPGDHASPKSATAHDSGCALGRYTETNAPLHFWTDNPDPPFDKWCEKHGVKTISKLQ 357

Query: 304 A 304
           A
Sbjct: 358 A 358


>gi|53721419|ref|YP_110404.1| hypothetical protein BPSS0382 [Burkholderia pseudomallei K96243]
 gi|52211833|emb|CAH37832.1| hypothetical protein BPSS0382 [Burkholderia pseudomallei K96243]
          Length = 955

 Score = 51.0 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   WS+    Y+  +    W +
Sbjct: 10  ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNVRDARDVWKS 67

Query: 272 FDFEEI 277
           F   +I
Sbjct: 68  FKGGKI 73


>gi|91784038|ref|YP_559244.1| putative DNA replication primase [Burkholderia xenovorans LB400]
 gi|91687992|gb|ABE31192.1| Putative DNA replication primase [Burkholderia xenovorans LB400]
          Length = 621

 Score = 51.0 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
             +  W+ +  A+ H      +G EI   WS+  + Y++      W +        +A  
Sbjct: 22  DDYATWVDMAFALKHGF--GDEGFEIWDAWSRTAANYNDRAARTTWRS-------ASASG 72

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
             T  +LF+H  +     L  + + D     +
Sbjct: 73  GKTLATLFWHARQHGFD-LSRTHYPDQMTAVL 103


>gi|114669868|ref|XP_001149361.1| PREDICTED: similar to mSUG1 protein isoform 2 [Pan troglodytes]
          Length = 387

 Score = 50.7 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 87/295 (29%), Gaps = 30/295 (10%)

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
              EE +    +               N +     +      E GS        +D    
Sbjct: 26  SKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKV 85

Query: 428 FLG-EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
            +    +  + L             K   +        V     +    L     E +EV
Sbjct: 86  LVKVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEV 145

Query: 483 MDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
           ++           +G+A        + + + G  G+GK+ L   + +   +   I    S
Sbjct: 146 IELPVKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGS 198

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LN 592
           +++Q    E  +    L  +       I   +E D I +++++  +GGD    R    L 
Sbjct: 199 ELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELL 258

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
                 E+  +    +  N+   +   D A  R  R    I F  P  N +A   
Sbjct: 259 NQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 308


>gi|300361363|ref|ZP_07057540.1| prophage ps2 protein 15 [Lactobacillus gasseri JV-V03]
 gi|300353982|gb|EFJ69853.1| prophage ps2 protein 15 [Lactobacillus gasseri JV-V03]
          Length = 437

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 109/360 (30%), Gaps = 44/360 (12%)

Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV- 482
                +  ++ +LD              +       +   +  +        +  +E+  
Sbjct: 105 KDYTGVAFKNSLLDQAIQNVAYMNSYNPVIDYMNHAYAHWDKKRRLDKFFPEFLGAEDTE 164

Query: 483 ------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
                   +F   V        K    + I G  G GK++L+  I           A   
Sbjct: 165 TTRLITRLFFMGVVAKIYKPETKFDFVLDIVGGQGVGKTSLLQNI-----------APLG 213

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
                      K +     +  + IV   E   ++     ++K+         R  Y   
Sbjct: 214 LYTDQFNSFTNKDDF--AVMKNAVIVNDDEMTASNAAKFEEVKKFITMQVFEYRKAYARK 271

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
             +    F      N+   +++      RR+I I  +K    +  +    L ++Y  +  
Sbjct: 272 AEKFKKKFVMARTTNEVRHLKDRSGD--RRFISIYANKK--RQLKNPVTDLTSEYVEQLW 327

Query: 657 KWFLKGVKAYISKG-LDVDIPEVCLKAKEEERQGT---DTYQAWIDDCCDIGENLWEESH 712
              +   K       L     E+  + +E+ R  +   D     +++     +  +  ++
Sbjct: 328 GEAVYLYKIAKDPFLLTPHQEELLKENREQFRYTSGLEDQLMDVLEN--QFKDKDFISNN 385

Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
            L  S++ + + E      +  TR +   ++  G+  G ++            I G++++
Sbjct: 386 DL--SFAVFADDEALNKNNK-DTRDIRYFMEHLGYRVGARKR-----------INGVRIR 431


>gi|321468365|gb|EFX79350.1| hypothetical protein DAPPUDRAFT_52572 [Daphnia pulex]
          Length = 399

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 41  QRNELNAKVRMLREELQLLQEQGSYVGEVVKAMDKKKVLVKV--------HPEGKFVVDI 92

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D      +  ++    L      K    + +      P    E        + 
Sbjct: 93  DKNIDINDIKPNCRVALRNDSYTLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 152

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +   + 
Sbjct: 153 EI---KEVIELPIKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDC 202

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 203 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 262

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 263 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 317

Query: 642 SFA 644
              
Sbjct: 318 RLD 320


>gi|301299425|ref|ZP_07205704.1| primase C-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852961|gb|EFK80566.1| primase C-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 752

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 27/149 (18%)

Query: 210 ITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST-YDEENFNYK 268
           +   L        N  + EW+ V MA+ +E             WS++ ST Y +     K
Sbjct: 8   LLELLDYIDPSMLN--YQEWVNVGMALKYE----GYSVSDWDNWSQRDSTRYHDGETERK 61

Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS------------DAYNKAMF 316
           W+TFD         K  T  ++         K   A                D   + + 
Sbjct: 62  WNTFDGST------KPVTGATITQLAKDNGWKPYSADSNDSFDWGDSFVASIDKGYQLIN 115

Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
             Y  G  +     K W    +   YI +
Sbjct: 116 KDYIDGEKVLPP--KTWNPVKQITDYIET 142


>gi|259129701|gb|ACV95356.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:-]
          Length = 327

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 79/280 (28%), Gaps = 28/280 (10%)

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
            R +  +L+   K    I ++ V G+GK T +  +    G        A  I        
Sbjct: 44  WRTLSKSLM--KKPSVAIVMKSVPGTGKGTTVKPLLQILGQYAAHINGAGHISGRFNSI- 100

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
                    L    +V   E   +    A ++K +             +     P     
Sbjct: 101 ---------LANKLLVFADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARL 150

Query: 607 FIVPNKHLFVRNPDDAWW-RRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKG 662
               N    ++        RRY+V+    P   +   +  +L +           W LKG
Sbjct: 151 IFASNSTQVLQ---AGIRERRYLVLE-PSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKG 206

Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSY 718
           V      G D          +EE   G    + ++             +   +  +   +
Sbjct: 207 VDL---SGFDPQRAPQTDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRF 263

Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
             +  +     ++  +   +  +L Q G +   + ++   
Sbjct: 264 VAWSLERGEKLKEPAARSLLGKSLAQMGLVKHGRPDRGNG 303


>gi|41057246|ref|NP_958272.1| hypothetical protein VWBp30 [Streptomyces phage VWB]
 gi|39656069|gb|AAR29720.1| hypothetical protein [Streptomyces phage VWB]
          Length = 193

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 37/133 (27%), Gaps = 11/133 (8%)

Query: 11  KQAIHNGFKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAF 68
            + + +  + +PL +G           W       + +      G GFV       +   
Sbjct: 47  PRWVRHTARKVPLTVGGSVASSTDSSTWSRYR---DAVASSAGAGIGFVL--DGDGIVCL 101

Query: 69  DIDSKDEKTANTF--KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
           D+D   +                G   V + +    L  +        ++       G +
Sbjct: 102 DLDHALDVDGEVLPWAQRIVEAAGATWVEVSRSGSGLHVWGRGSLPHGRR--IAVGSGSV 159

Query: 127 DILGCGQYFVAYN 139
           ++ G G++     
Sbjct: 160 ELYGTGRFIAVTG 172


>gi|326933520|ref|XP_003212850.1| PREDICTED: DNA-binding protein RFX5-like [Meleagris gallopavo]
          Length = 304

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
             E     +    WI +  +   +       +  +Y +Y +   N     +S       +
Sbjct: 88  TAEYMHACN----WIRNHLEEHADTCLPKQDVYDAYRQYCD---NLCCHPLSAANFGKII 140

Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
           ++      IK  ++    +SK    G++ K 
Sbjct: 141 RE--IFPNIKARRLGGRGQSKYCYGGIRRKT 169


>gi|123192841|ref|XP_001282682.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121840481|gb|EAX69752.1| hypothetical protein TVAG_548620 [Trichomonas vaginalis G3]
          Length = 179

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 56/191 (29%), Gaps = 15/191 (7%)

Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
            +    +N+  +K +           Y +       +    +  N         D   RR
Sbjct: 1   IDTTKVLNSDALKSLITDLVGVVERKYRDQRVCENVANFVMVSNNAVPMKLESSD---RR 57

Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEE 685
           Y+V+        +D  +   L    T                   +   IP    + ++ 
Sbjct: 58  YVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIP--HTEERQT 114

Query: 686 ERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
             +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT   N+K 
Sbjct: 115 LLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKN 167

Query: 745 KGFIGGIKREK 755
              +   K  K
Sbjct: 168 LLDVRNGKYRK 178


>gi|126726228|ref|ZP_01742070.1| hypothetical protein RB2150_08468 [Rhodobacterales bacterium
           HTCC2150]
 gi|126727536|ref|ZP_01743369.1| hypothetical protein RB2150_09534 [Rhodobacterales bacterium
           HTCC2150]
 gi|126703126|gb|EBA02226.1| hypothetical protein RB2150_09534 [Rhodobacterales bacterium
           HTCC2150]
 gi|126705432|gb|EBA04523.1| hypothetical protein RB2150_08468 [Rhodobacterales bacterium
           HTCC2150]
          Length = 581

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 16/166 (9%)

Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG--VGGSGKSTLMNLIKYAFGNQY 529
            ++   E           +  +L        +  +      G+GKST+  +++  FG Q 
Sbjct: 193 FLNFAIEDTGQQTVLLDWIAWSLQHEASKPTWAILLFSEEKGTGKSTIGVVLEALFGAQN 252

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMT 588
               +  D +     +         R++  ++++  E + +        +K +   D  T
Sbjct: 253 TAKLDGVDKLVATHND---------RVLDKKLIVAEEVHISSHSKTGNALKDLITSDRTT 303

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
               Y       P         N         +   RRY +I    
Sbjct: 304 VNPKY-QAMKTIPLKACYLFTTNHKPLWLEGGE---RRYYIIEMKH 345


>gi|256841206|ref|ZP_05546713.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737049|gb|EEU50376.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 415

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 25/208 (12%)

Query: 457 GTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
                  E        LV   F  + E+ MDY        L    K    + +     +G
Sbjct: 97  PIDHRPQEGDLSHIQSLVQHIFGEQYELGMDYLQLLY---LQPIQKLPILLLVSEERNTG 153

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KST +N +K  F      N    +  ++   +            G  ++++ E   N   
Sbjct: 154 KSTFLNFLKALF-----QNNVTFNTNEDFRSQFNS------DWAGKLLIVVDEVLLNRRE 202

Query: 574 NAAKIKQMTGGDCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIP 631
           ++ ++K ++            +       A F           + +  +  +W R I   
Sbjct: 203 DSERLKNLSTTLSYKVEAKGKDRDEIAFFAKFVLCSNNEHLPVIIDAGETRYWVRKI--- 259

Query: 632 FDKPIANRDASFAQKLETKYTLEAKKWF 659
               + + D  F QKL          + 
Sbjct: 260 --NRLQSDDTDFLQKL-KAEIPAFLHFL 284


>gi|158335425|ref|YP_001516597.1| hypothetical protein AM1_2272 [Acaryochloris marina MBIC11017]
 gi|158305666|gb|ABW27283.1| hypothetical protein AM1_2272 [Acaryochloris marina MBIC11017]
          Length = 519

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 31/162 (19%)

Query: 8   EQAKQAIHNGFKLIPLRLGD-------KRPQRLG-----------KWEEQLLSSEKIDKL 49
           + A   +  G   +P+           K P  L            +++ +  +  +ID  
Sbjct: 16  DVAIGYLDLGSSPLPVAPKQPNSNFNGKNPSYLDEQGKAYLISSKQYQNKQPTRTEIDLW 75

Query: 50  ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP-------IVRIGQK 99
              P  G G +   G   L+  D+D+K   +    +                 + R    
Sbjct: 76  FANPENGIGIL---GNNHLHIVDVDTKHFDSKEVCEQVVNKWLDKHSQLHDAQVERTLSD 132

Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIH 141
              +        G  +   +E      +I G  Q+ V     
Sbjct: 133 GFHIYVEFAEPPGFTRFAFSEGGSHVGEIQGPNQFTVVAPTV 174


>gi|198275330|ref|ZP_03207861.1| hypothetical protein BACPLE_01491 [Bacteroides plebeius DSM 17135]
 gi|212691219|ref|ZP_03299347.1| hypothetical protein BACDOR_00710 [Bacteroides dorei DSM 17855]
 gi|298383992|ref|ZP_06993553.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|198271913|gb|EDY96183.1| hypothetical protein BACPLE_01491 [Bacteroides plebeius DSM 17135]
 gi|212666451|gb|EEB27023.1| hypothetical protein BACDOR_00710 [Bacteroides dorei DSM 17855]
 gi|298263596|gb|EFI06459.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 415

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 80/322 (24%), Gaps = 55/322 (17%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
           +  L K         + +   ++ L  +P  N    K    W N              K 
Sbjct: 11  NEVLMKQGNFENEEFIRVGTTLYKLVNQPRLNGGYVKKRIVWNNE------TLRQDYGKD 64

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK--PTKELYITKSTGTPFVE 462
              ++     F    D +D           ++D                          +
Sbjct: 65  YLATVPKYDGFCTVPDHVDYRP--------VVDKFLNLYEPIGHRP-------------Q 103

Query: 463 GEPSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
                    LV   F  + E+ MDY        L    K    + +     +GKST +N 
Sbjct: 104 QGEFPCIRSLVRHIFGEQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNF 160

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           +K  F N    N       Q                 G  ++++ E   N   ++ ++K 
Sbjct: 161 LKAVFQNNVTFNTNEDFRSQFN-----------SDWAGKLLIVVDEVLLNRREDSERLKN 209

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-- 638
           ++           G    E        +  N        D    R      + + I    
Sbjct: 210 LSTTLSYKVEAK-GKDRDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQ 263

Query: 639 -RDASFAQKLETKYTLEAKKWF 659
             D  F QKL          + 
Sbjct: 264 SDDTDFLQKL-KAEIPAFLYYL 284


>gi|189521400|ref|XP_688865.3| PREDICTED: DNA-binding protein RFX7-like [Danio rerio]
          Length = 1466

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +         +S       +K       +K  
Sbjct: 96  SWIRNHLEEHPETSLPKQEVYDEYKSYCDS---LGYHALSAADFGKIMKN--VFPNMKAR 150

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    KSK    GL+ K 
Sbjct: 151 RLGMRGKSKYCYSGLRKKT 169


>gi|112943754|gb|ABI26321.1| hypothetical protein lr1428 [Lactobacillus reuteri]
          Length = 978

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/496 (11%), Positives = 134/496 (27%), Gaps = 78/496 (15%)

Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA-----DTKAWYKKDKNNVYIWS 345
            + +        +  + +DA  K  FS       +Y               ++++VY   
Sbjct: 452 VWANENSRDPNTIIKKLNDALVKDRFSNLSIADKVYNDPATILVDNQLMALNEHHVYTAD 511

Query: 346 LTL------DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
                      I AS   F+ + + +V++L    +  N         F ++ +   ++  
Sbjct: 512 SKAVNSIIDKYIDASGKRFIRNSRNNVYELLNNNKYKNG---KLDIGFKSENQTIWIDNK 568

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
                     + G+  ++     ++       ++     +    +    + Y  + T   
Sbjct: 569 GVHTENPLLKKVGNYVNVDYINYEADKDLFNSEEY---SQVEAFLTHISDGYYRQIT--- 622

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
                     L L+    +   ++    R                 + GV GSGK+ L  
Sbjct: 623 --------CMLALI--VLQDPNIVPTLRRA--------------FILYGVPGSGKTVLAK 658

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL----MGSRIVIISETNENDEINA 575
           L+   F         +  +           +P+LI       G  ++   +   +   N 
Sbjct: 659 LLCKIFDEPNR---PSRILCSEPNINKVFTDPNLIDANDTKKGKLVLWFDDFQSDGRSNE 715

Query: 576 ------AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
                   I  +T  +  T    +   Y +        +  N    ++        R  V
Sbjct: 716 IKRNVGKVINAVTSNEAKTGAAKFQQ-YHDIKLPSLIVLSTNDVPQIK--HIGTVDRIFV 772

Query: 630 IPFDKPIANR---------DASFAQKLETKYTL-EAKKWFLKGVKAYISKGLDVDIPEVC 679
           I   K + +          DA    K   +          +  +     +     I +  
Sbjct: 773 IKSSKRLTDDPNISFSSNIDAWINNKKVQEAFFCIILNTAVDILNMSKDE--AKSIFDKS 830

Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWE--ESHSLAKSYSEYREQELNYDRKRISTRT 737
             A+        + +A+ ++            ++  L   Y E    E N+     + R 
Sbjct: 831 NSAQSALSNLNSSIEAFFEEQNITSLYDLVGMQAKKLFDVYLE---GEKNFA-YATTYRA 886

Query: 738 VTLNLKQKGFIGGIKR 753
               ++  G     K 
Sbjct: 887 FCDQIEGLGLNLRRKH 902


>gi|325860203|ref|ZP_08173328.1| hypothetical protein HMPREF9303_0578 [Prevotella denticola CRIS
           18C-A]
 gi|325482290|gb|EGC85298.1| hypothetical protein HMPREF9303_0578 [Prevotella denticola CRIS
           18C-A]
          Length = 396

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 66/233 (28%), Gaps = 27/233 (11%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489
           DG   +      +P  + ++           E        L+   F  + E+ MDY    
Sbjct: 54  DGFCTVPNHVNYQPVVDKFLNLYEPIGHQPKEGEFLHIESLIRHIFGEQYELGMDYLQLL 113

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
               L    K    + +     +GKST +N +K  F N    N       Q         
Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFQNNVTFNTNEDFRSQFN------- 163

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
               +   G  ++++ E   N   ++ ++K ++           G    E        + 
Sbjct: 164 ----VDWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTLEAKKWF 659
            N  L     D    R      + + I      D  F QKL          + 
Sbjct: 219 SNNELLPVIIDVGETR-----YWVRKIERLKSDDTDFLQKL-KAEIPAFLYFL 265


>gi|301308956|ref|ZP_07214901.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300832982|gb|EFK63607.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 395

 Score = 50.7 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 55/196 (28%), Gaps = 28/196 (14%)

Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
                LV   F  + E+ MDY        L    K    + +     +GKST +N +K  
Sbjct: 90  PCIRSLVEHIFGEQYELGMDYMQLLY---LYPIQKLPILLLVSEERNTGKSTFLNFLKAI 146

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
           F +    N       Q                 G  ++++ E   N   ++ ++K ++  
Sbjct: 147 FQDNVTFNTNEDFRSQFN-----------SDWAGKLLIMVDEVLLNRREDSERLKNLSTT 195

Query: 585 DCMTARLNYGNTY-SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RD 640
                     +       A F           + +  +  +       + + I      D
Sbjct: 196 LSYKVEAKGKDRNEIGFFAKFVLCSNNEHLPVIIDAGETRY-------WVRKIERLQCDD 248

Query: 641 ASFAQKLETKYTLEAK 656
             F QKL         
Sbjct: 249 TDFLQKL-KDEIPAFL 263


>gi|255282238|ref|ZP_05346793.1| RecA-family ATPase [Bryantella formatexigens DSM 14469]
 gi|255267186|gb|EET60391.1| RecA-family ATPase [Bryantella formatexigens DSM 14469]
          Length = 744

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 45/203 (22%), Gaps = 26/203 (12%)

Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
            + S+ EW  V MA+  E         +   WS+  S Y +     KW+ F         
Sbjct: 18  ADLSYTEWCAVGMALKEEGFD----VSVWDGWSRNDSRYHKGECGRKWNGFR------GN 67

Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
               T  ++     +                     +       Y             N 
Sbjct: 68  SAPVTAGTIVQLAKERGWVPDTG-----------HELGWDDTIRYDDAH----MVVNRNW 112

Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
                  +         L+   E +F+  E        S       +    R N +  + 
Sbjct: 113 LEGRDIAEPAEWDPAAQLIKYLETLFEAGENV-GYVSGSMKNEKGRHVPKDRGNYDRTAG 171

Query: 402 AKSTAQSLEAGSIFSITSDLLDS 424
               A S              D 
Sbjct: 172 QLIEALSKCHDGDIGNVIGDYDQ 194


>gi|313158708|gb|EFR58096.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 403

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 67/246 (27%), Gaps = 30/246 (12%)

Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478
           D    +L      DG   +      +P  + ++           +        LV   F 
Sbjct: 48  DYGKDYLATVPKYDGFCTVPDHVDYRPVVDKFLNLYEPIGHRPQQGEFPCIRSLVRHIFG 107

Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
            + E+ MDY        L    K    + +     +GKST +N +K  F N    N    
Sbjct: 108 EQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKAVFQNNVTFNTNED 164

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
              Q                 G  ++++ E   N   ++ ++K ++           G  
Sbjct: 165 FRSQFN-----------SDWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKD 212

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653
             E        +  N        D    R      + + I      D  F QKL      
Sbjct: 213 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 266

Query: 654 EAKKWF 659
               + 
Sbjct: 267 AFLYYL 272


>gi|154490806|ref|ZP_02030747.1| hypothetical protein PARMER_00723 [Parabacteroides merdae ATCC
           43184]
 gi|154088554|gb|EDN87598.1| hypothetical protein PARMER_00723 [Parabacteroides merdae ATCC
           43184]
          Length = 407

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 61/208 (29%), Gaps = 28/208 (13%)

Query: 458 TPFVEGEPSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
           T   +        +L+   F    E+ MDYF       L    K    + +     +GKS
Sbjct: 90  THIPQKGKFPHIQELIHHIFGEHYELGMDYFQLLY---LNPVQKLPILLLVSQERNTGKS 146

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
           T +N +K  F +    N       Q                 G  ++ + E   N   ++
Sbjct: 147 TFLNFLKAIFQDNVTFNTNEDFRSQFN-----------ADWAGKLLIGVDEVLLNRREDS 195

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK----HLFVRNPDDAWWRRYIVIP 631
            ++K ++           G    E        +  N      L        W R+     
Sbjct: 196 ERLKNLSTASVYKIEAK-GKDRCEVQFFGKFIMCSNNEDTPVLIEPGETRYWMRKI---- 250

Query: 632 FDKPIANRDASFAQKLETKYTLEAKKWF 659
              P+ N D SF QKL T        + 
Sbjct: 251 --NPLKNDDTSFLQKLIT-EIPAFLYFL 275


>gi|123183286|ref|XP_001280849.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121834082|gb|EAX67919.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|299141454|ref|ZP_07034591.1| conserved hypothetical protein [Prevotella oris C735]
 gi|298577414|gb|EFI49283.1| conserved hypothetical protein [Prevotella oris C735]
          Length = 415

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 57/197 (28%), Gaps = 24/197 (12%)

Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
                L    F  + E+ MDY        L    K    + +     +GKST +N +K  
Sbjct: 106 PHIEALARHIFGEQYELGMDYLQLLY---LHPIEKLPILLLVSEERNTGKSTFLNFLKAL 162

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
           FG     N       Q                 G  ++++ E   +   ++ ++K ++  
Sbjct: 163 FGGNVTFNTNEDFRSQFN-----------SDWAGKLLILVDEVLLDRREDSERLKNLSTT 211

Query: 585 DCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDAS 642
                     +       A F       +   + +  +  +W R +       I   D  
Sbjct: 212 LSYKVEAKGKDRDEISFFAKFVLCSNNERLPVIIDTGETRYWVRKV-----GRIEKDDTD 266

Query: 643 FAQKLETKYTLEAKKWF 659
           F Q+   +       + 
Sbjct: 267 FLQR-VKEEIPAFLYFL 282


>gi|262382812|ref|ZP_06075949.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295690|gb|EEY83621.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 407

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 81/297 (27%), Gaps = 32/297 (10%)

Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR---F 428
               N +       +         +        + + +      S+    LD        
Sbjct: 1   MAPTNGEVENIGEEYVRIGTTLFRIINQPMMNGSFRKMRVEWKMSVF--RLDHGKDEAAL 58

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDY 485
           + + DG   + +    +     +         +  E        L+   F  + E+ MDY
Sbjct: 59  IPKYDGFCTMPSHTDYRLNVNNFYNLYEPITHIPKEGEFGHIHSLIEHIFSEQYELGMDY 118

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
                   L    K    + +     +GKST +N +K  F      N       Q     
Sbjct: 119 LQLLY---LKPTQKLPILLLVSEERNTGKSTFLNFLKALFQENVTFNTNEDFRSQFN--- 172

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                       G  ++++ E   N   ++ ++K ++            + Y E      
Sbjct: 173 --------ADWAGKLMIVVDEVLLNRREDSERLKNLSTAHSYKMEAKGKDRY-EVQFFAK 223

Query: 606 PFIVPNK---HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
             +  N     +++   +  +W R I       +   D SF QKL          + 
Sbjct: 224 FVLCSNNENFPVYIEPEETRYWVRKI-----SRLVTDDTSFLQKL-KDEIPAFLYYL 274


>gi|154333715|ref|XP_001563114.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134060124|emb|CAM37437.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 580

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262
           ++   +               ++D W+ V +A+H+ +       E    +S +    Y  
Sbjct: 488 KWRRFKSVTAKLRTLPPRAAETYDVWVRVGLALHNFSNEDHV-FEEWVLFSLKSPLKYSR 546

Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTF 287
           E    KW  F+        ++   +
Sbjct: 547 EVCRKKWVQFERNPDALNWRRGYNY 571


>gi|256838365|ref|ZP_05543875.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739284|gb|EEU52608.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 410

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 69/246 (28%), Gaps = 30/246 (12%)

Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478
           D    +L      DG   +      +P  + ++           +        LV   F 
Sbjct: 55  DYGKDYLATVPKYDGFCTVPDHVDYRPVVDKFLNLYEPIGHRPQQGEFPCIRSLVRHIFG 114

Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
            + E+ MDY        L    K    + +     +GKST +N +K  F      N    
Sbjct: 115 EQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKAVF-----QNNVTF 166

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
           +  ++   +            G  ++++ E   N   ++ ++K ++           G  
Sbjct: 167 NTNEDFRSQFNS------DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKD 219

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653
             E        +  N        D    R      + + I      D  F QKL      
Sbjct: 220 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 273

Query: 654 EAKKWF 659
               + 
Sbjct: 274 AFLYYL 279


>gi|167753785|ref|ZP_02425912.1| hypothetical protein ALIPUT_02069 [Alistipes putredinis DSM 17216]
 gi|255007929|ref|ZP_05280055.1| hypothetical protein Bfra3_02243 [Bacteroides fragilis 3_1_12]
 gi|301311553|ref|ZP_07217480.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|313145641|ref|ZP_07807834.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|167658410|gb|EDS02540.1| hypothetical protein ALIPUT_02069 [Alistipes putredinis DSM 17216]
 gi|300830639|gb|EFK61282.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|313134408|gb|EFR51768.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 401

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 69/246 (28%), Gaps = 30/246 (12%)

Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478
           D    +L      DG   +      +P  + ++           +        LV   F 
Sbjct: 46  DYGKDYLATVPKYDGFCTVPDHVDYRPVVDKFLNLYEPIGHRPQQGEFPCIRSLVRHIFG 105

Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
            + E+ MDY        L    K    + +     +GKST +N +K  F      N    
Sbjct: 106 EQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKAVF-----QNNVTF 157

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
           +  ++   +            G  ++++ E   N   ++ ++K ++           G  
Sbjct: 158 NTNEDFRSQFNS------DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKD 210

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653
             E        +  N        D    R      + + I      D  F QKL      
Sbjct: 211 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 264

Query: 654 EAKKWF 659
               + 
Sbjct: 265 AFLYYL 270


>gi|156603988|ref|YP_001429934.1| hypothetical protein SPTP3102_gp39 [Staphylococcus phage tp310-2]
 gi|154818074|gb|ABS87501.1| hypothetical protein [Staphylococcus phage tp310-2]
          Length = 815

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           V   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 VARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQNKHTEES-PYTGIIDEYL 706


>gi|239941271|ref|ZP_04693208.1| hypothetical protein SrosN15_09776 [Streptomyces roseosporus NRRL
           15998]
 gi|239987727|ref|ZP_04708391.1| hypothetical protein SrosN1_10513 [Streptomyces roseosporus NRRL
           11379]
          Length = 136

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 8/110 (7%)

Query: 32  RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANT--FKDTFEILH 89
               W       E        G GFV       +   D+D   ++      +  T     
Sbjct: 12  DPSTWSRYS---EAAASGKGAGLGFVL--NGDGVVCLDLDHCLDEHGEPAGWARTILDAA 66

Query: 90  GTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
           G   V + +    L  +        ++ T     G +++ G G+Y     
Sbjct: 67  GPTWVEVSRSGDGLHLWGYGTLPHGRRITVGGG-GSVELYGTGRYIAVTG 115


>gi|291301676|ref|YP_003512954.1| Bifunctional DNA primase/polymerase [Stackebrandtia nassauensis DSM
           44728]
 gi|290570896|gb|ADD43861.1| Bifunctional DNA primase/polymerase [Stackebrandtia nassauensis DSM
           44728]
          Length = 304

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 39/166 (23%), Gaps = 10/166 (6%)

Query: 76  KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135
              +TF            V      + L  +  +  G   K         +D+   G Y 
Sbjct: 105 DGTHTFVRLLADGVLPATVTANTGSRGLHLYYAHPGG-TVKSGGNRLGPGVDVKADGAYV 163

Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195
           V         K YTW        +E +P+       +          P     +      
Sbjct: 164 VLPPSTV-NGKAYTWRPGTDPTSLELSPIG------HKLAELLAPAEPSAPVFRPAPMVS 216

Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
              +        R   A L         G+ ++ +    A +    
Sbjct: 217 ASASAFAAPSNARGRLAGLVSVVLSAPEGNRNDVLN--WAAYKAAD 260


>gi|150008750|ref|YP_001303493.1| hypothetical protein BDI_2140 [Parabacteroides distasonis ATCC
           8503]
 gi|149937174|gb|ABR43871.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 413

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 23/207 (11%)

Query: 457 GTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
                  E        LV   F  + E+ MDY        L    K    + +     +G
Sbjct: 95  PIDHRPQEGDLSHIQSLVRHIFGEQYELGMDYLQLLY---LQPIQKLPILLLVSEERNTG 151

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KST +N +K  F      N    +  ++   +            G  ++++ E   N   
Sbjct: 152 KSTFLNFLKALF-----QNNVTFNTNEDFRSQFNS------DWAGKLLIVVDEVLLNRRE 200

Query: 574 NAAKIKQMTGGDCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
           ++ ++K ++            +       A F           + +  +    RY V   
Sbjct: 201 DSERLKNLSTTLSYKVEAKGKDRDEIAFFAKFVLCSNNEHLPVIIDAGE---TRYWVRKI 257

Query: 633 DKPIANRDASFAQKLETKYTLEAKKWF 659
           D+  ++ D  F QKL          + 
Sbjct: 258 DRLRSD-DTDFLQKL-KAEIPAFLHFL 282


>gi|91783159|ref|YP_558365.1| putative DNA replication primase protein [Burkholderia xenovorans
           LB400]
 gi|91687113|gb|ABE30313.1| Putative DNA replication primase protein [Burkholderia xenovorans
           LB400]
          Length = 620

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 11/108 (10%)

Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
            E     +          ++ W+ +  A+        +G EI   WS+  + YDE     
Sbjct: 7   DEANRARAALAV-IPADDYETWVDMAFALKQGF--GDEGFEIWDAWSRTAANYDERAART 63

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
            W +              T  +LF+   +     L  + + D     +
Sbjct: 64  TWRSVSESGG-------KTLATLFWRAREHGFD-LRRTHYPDRMTAVL 103


>gi|156633500|gb|ABU90823.1| E1 [Macaca fascicularis papillomavirus type 3b]
          Length = 627

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 67/205 (32%), Gaps = 36/205 (17%)

Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
            +G   +  +  +   +++ E + +        L G  K    I + G   +GKS     
Sbjct: 412 DDGGDWRPIVQFLR--YQNVEFITFL-SAFKAFLKGIPKKS-CIVLYGPPNTGKS----- 462

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE--TNENDEINAAKI 578
                   + ++                ++  L  L  +++ ++ +        I+   +
Sbjct: 463 -------YFGMSLMQFLQGSIISYVNSNSHFWLAPLAEAKVAMLDDATPQCWSYIDT-YM 514

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR----RYIVIPFDK 634
           + +  G+ M+    + N          P I+ +    V   D   WR    R +V  F++
Sbjct: 515 RSVLDGNPMSIDRKHKNL---IQMKCPPLIITSNT-NVGEDDR--WRYLHSRVVVFKFEQ 568

Query: 635 PIA-NRDASFAQKLETKYTLEAKKW 658
               +++ +   +L  K       W
Sbjct: 569 AFPFDQNGNPVYELSDK------NW 587


>gi|148267487|ref|YP_001246430.1| virulence-associated E family protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393540|ref|YP_001316215.1| virulence-associated E family protein [Staphylococcus aureus subsp.
           aureus JH1]
 gi|147740556|gb|ABQ48854.1| virulence-associated E family protein [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945992|gb|ABR51928.1| virulence-associated E family protein [Staphylococcus aureus subsp.
           aureus JH1]
          Length = 815

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 66/215 (30%), Gaps = 26/215 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671

Query: 670 GLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCC 701
           G ++ +     +A    +        Y   ID+  
Sbjct: 672 GEELFLNPELEEAMRSIQSKHTEESPYTGIIDEYL 706


>gi|88813297|ref|ZP_01128536.1| hypothetical protein NB231_07357 [Nitrococcus mobilis Nb-231]
 gi|88789469|gb|EAR20597.1| hypothetical protein NB231_07357 [Nitrococcus mobilis Nb-231]
          Length = 252

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 16/100 (16%)

Query: 679 CLKAKEEERQGT-------DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
             +A E+ R          D    +I+  C         +     +Y ++   E N   +
Sbjct: 152 VDEASEQTRLEATQLQAALDQVAQFIETQCRRSTTTRAPAEVFYDAYKDWMRSEHNA--R 209

Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
            +  +     L   G+         +++ +  +++ GL+L
Sbjct: 210 PLGHKDFFERLDYYGY-------PQQRDARGVQLLIGLQL 242


>gi|15674737|ref|NP_268911.1| hypothetical protein SPy_0671 [Streptococcus phage 370.1]
 gi|94992064|ref|YP_600163.1| ATPase [Streptococcus phage 2096.1]
 gi|13621860|gb|AAK33632.1| hypothetical protein, phage associated [Streptococcus phage 370.1]
 gi|94545572|gb|ABF35619.1| RecA-family ATPase [Streptococcus phage 2096.1]
          Length = 757

 Score = 50.3 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 14/129 (10%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284
           S+ +W+ V  A+ HE             WS+  S Y +     KWD+F    +G      
Sbjct: 21  SYQDWVNVGFALKHE----GYTAMDWDIWSQSDSRYKKGECFAKWDSFQGNGLG--TVTG 74

Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI- 343
           +T T L   +G               ++  +   YK          K W +  +      
Sbjct: 75  ATITQLAKENGWTSDYRTSDEAHELDWDSTIDRDYK-------IIDKNWIEAKEIREPTN 127

Query: 344 WSLTLDKIT 352
           WS   D IT
Sbjct: 128 WSPVHDLIT 136


>gi|254196284|ref|ZP_04902708.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|169653027|gb|EDS85720.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
          Length = 950

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           + W    MA+  E     +G  +   WS     Y+  +    W +
Sbjct: 5   ERASVALGYVPADDRNTWRQAGMALKAEF--GEEGFTLWNEWSLGAQNYNARDARDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|123168638|ref|XP_001279386.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121828800|gb|EAX66456.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 181

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 15/177 (8%)

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             +N+  +K +           Y +       +    +  N         D   RRY+V+
Sbjct: 3   KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 59

Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689
                   +D  +   L    T +                 +   IP    + ++   + 
Sbjct: 60  R-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPH--TEERQTLLEA 116

Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
             +    +ID+     + +  +  SL  SY +Y ++   Y     S RT   N+K  
Sbjct: 117 NKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTFLANVKSL 166


>gi|312868644|ref|ZP_07728838.1| primase C-terminal domain protein [Lactobacillus oris PB013-T2-3]
 gi|311095853|gb|EFQ54103.1| primase C-terminal domain protein [Lactobacillus oris PB013-T2-3]
          Length = 750

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 47/151 (31%), Gaps = 21/151 (13%)

Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTY 260
           + Q+  R +  ++        + S+ EW  V MA+ HE            +WS++ G  Y
Sbjct: 2   DEQFDLRPLLDYIDP-----ASCSYAEWAQVGMALKHE----GYSVSDWDQWSQRDGDRY 52

Query: 261 DEENFNYKWDTF--------DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN 312
                  KW TF            I   AK      +            L      D   
Sbjct: 53  HAGECERKWRTFKEAAGSVVTGATITQMAKNAGWQPASHDDEILDWDSALEVDDL-DRGY 111

Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
           + + + Y KG  L       W   D+   ++
Sbjct: 112 RLIDTDYIKGTKLQEPKN--WNPVDQIKRFV 140


>gi|149408297|ref|YP_001294576.1| hypothetical protein ORF068 [Pseudomonas phage M6]
          Length = 803

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 92/301 (30%), Gaps = 28/301 (9%)

Query: 457 GTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVG-MALLGGNKAQRFIHIRGVGGSG 513
               + GE    FL+ +       + E   Y    +  M        +  + +RG  G+G
Sbjct: 442 ACDSLPGEKHMPFLNHIRDNVCSGNPEHFHYLVGWMARMVQHPDGPGEVAVVLRGRRGTG 501

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KS    ++   FG  Y+  +++  ++ +            + L G            D+ 
Sbjct: 502 KSFFAKVLGAMFGRHYLQVSDSKHLVGSF----NAHLRDTVLLFGDEAFFA-----GDKK 552

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIPF 632
           + + +K +   + +       +  +  P      +  N+   V    D+   RR+ V+  
Sbjct: 553 HESVLKTLVTEEHLVIEGKGVDAEAA-PNYVHLVLASNEDWVVPAGLDE---RRFFVMEV 608

Query: 633 DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
            +    +D ++ ++++        +  L  +  Y     +V         ++++      
Sbjct: 609 GEG-HKQDHAYFKRIKDDLDNGGLEHLLHFLLTYDLSAFEVRQVPQTRALQDQKIMSMSP 667

Query: 693 YQAWIDDCC--------DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
              W+ +          D          SL   Y      +    R  +S       L +
Sbjct: 668 ETQWMYEKLWEGRLLKTDQDWRNKVVKDSLYDDYVNDLRDQGRNFR--MSRTGFGKWLAR 725

Query: 745 K 745
            
Sbjct: 726 A 726


>gi|123373018|ref|XP_001297566.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121877777|gb|EAX84636.1| hypothetical protein TVAG_255020 [Trichomonas vaginalis G3]
          Length = 194

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 23/188 (12%)

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
           +   +    +N+  +K +           Y +       +    +  N         D  
Sbjct: 9   LQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD-- 66

Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKA 682
            RRY+V+        +D  +   L    T +                 +   IP    + 
Sbjct: 67  -RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPY--TEE 122

Query: 683 KEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737
           ++   +   +    +ID    +C D          SL   Y +Y ++   Y     S RT
Sbjct: 123 RQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMTASKRT 171

Query: 738 VTLNLKQK 745
              N+K  
Sbjct: 172 FLANVKNL 179


>gi|170699160|ref|ZP_02890214.1| Primase 2 [Burkholderia ambifaria IOP40-10]
 gi|170135955|gb|EDT04229.1| Primase  2 [Burkholderia ambifaria IOP40-10]
          Length = 625

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 11/108 (10%)

Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
            E     +          ++ W+ +  A+        +G EI   WS+  + Y+E     
Sbjct: 7   DEADRVRAALAV-IPADDYETWVDMAFALKQGF--GDEGFEIWDAWSRTAANYNERAART 63

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
            W +              T  +LF+   +     L  + + D  + A+
Sbjct: 64  TWRSVSASGG-------KTLATLFWQARQHGFD-LKRTNYPDRMSAAL 103


>gi|123241630|ref|XP_001288061.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121856619|gb|EAX75131.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|242005728|ref|XP_002423714.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus
           corporis]
 gi|212506899|gb|EEB10976.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus
           corporis]
          Length = 526

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/558 (12%), Positives = 152/558 (27%), Gaps = 82/558 (14%)

Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFE 275
                     +  +   MA+      S    +   +   +   T DE     KW +   E
Sbjct: 1   MATSINEICENTKLAREMALMGNYESSGVYYQGVIQQIHRLLFTIDEPTRKSKWQSVQSE 60

Query: 276 EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA---DTKA 332
              +  + +    +L         +  +     +  N A     K  +  +     D   
Sbjct: 61  IAEEYEQVKELVNTLQLFKIDSNIERGIRGTAFNITNSAFEEPTKDPNAWFNNTLRDPDV 120

Query: 333 WYKKDKNNVYIWSL--TLDKITASIMNF-----LVSMKEDVFDLSEEPEDNNKNSKSPRF 385
           W         IW+     D  T S           S  +     S +      + KS R 
Sbjct: 121 WPPPPPRENDIWNSPTIADHRTNSHSRNSRTIDRRSEAQKKNQKSGQMTGKKIDMKSGRT 180

Query: 386 WFNTDYRRQNVEENSKA--KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443
             +      + ++N K   K      E      +     + S               G  
Sbjct: 181 IRSAVKNESSDKKNDKKTEKCDKDGKEKEKDEEVVERKFEGSGY------------DGDL 228

Query: 444 VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF 503
           V+  +   + K+    + +    QE   L+                +     G  +  + 
Sbjct: 229 VEMIERDIVQKNPNIHWDDIADLQEAKRLLEEAV-------VLPMWMPDYFKGIRRPWKG 281

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN--PSLIRLMGSRI 561
           + + G  G+GK+ L   +    G  +   + ++   + R            + R      
Sbjct: 282 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 341

Query: 562 VIISETN--------ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
           + I E +        E++   + ++K       +  +++  ++ +E P      +     
Sbjct: 342 IFIDEIDSLCSRRGSESEHEASRRVKS-----ELLVQMDGISSNAEEPGKIVMVLAATNF 396

Query: 614 LFVRNPDDAWWRRY---IVIPFDKP--------------IANRDASF---AQKLETKYTL 653
               + D+A  RR    I IP                    + +      A+KLE     
Sbjct: 397 P--WDIDEALRRRLEKRIYIPLPTRTGREALLKINLRDVKVDDNVDLIQVAKKLEGYSGA 454

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD---TYQAWID--DCCDIGENLW 708
           +            + + +    P+   +  +E     D   T Q +I+  + C    N  
Sbjct: 455 DITNVCRDASMMSMRRKIAGLRPDQIKQLPKE---ELDLPVTMQDFIEALEKC----NKS 507

Query: 709 EESHSLAKSYSEYREQEL 726
                L   Y ++  +  
Sbjct: 508 VSKEDL-DRYDKWMNEFG 524


>gi|66395658|ref|YP_240066.1| ORF002 [Staphylococcus phage 47]
 gi|253315481|ref|ZP_04838694.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|297207821|ref|ZP_06924255.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|62636082|gb|AAX91193.1| ORF002 [Staphylococcus phage 47]
 gi|296887537|gb|EFH26436.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|329729414|gb|EGG65819.1| Virulence-associated protein E [Staphylococcus aureus subsp. aureus
           21189]
          Length = 815

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 26/215 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671

Query: 670 GLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCC 701
           G D+ +     +     +        Y   ID+  
Sbjct: 672 GEDLFLNPELEEEMRSIQSKHTEESPYTGIIDEYL 706


>gi|296276322|ref|ZP_06858829.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           MR1]
          Length = 815

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 26/215 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671

Query: 670 GLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCC 701
           G D+ +     +     +        Y   ID+  
Sbjct: 672 GEDLFLNPELEEEMRSIQSKHTEESPYTGIIDEYL 706


>gi|258427145|ref|ZP_05688067.1| virulence-associated protein E [Staphylococcus aureus A9299]
 gi|257849923|gb|EEV73882.1| virulence-associated protein E [Staphylococcus aureus A9299]
          Length = 815

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 26/215 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671

Query: 670 GLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCC 701
           G D+ +     +     +        Y   ID+  
Sbjct: 672 GEDLFLNPELEEEMRSIQSKHTEESPYTGIIDEYL 706


>gi|282919232|ref|ZP_06326967.1| hypothetical protein SASG_00538 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282317042|gb|EFB47416.1| hypothetical protein SASG_00538 [Staphylococcus aureus subsp.
           aureus C427]
          Length = 815

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|284024517|ref|ZP_06378915.1| hypothetical protein Saura13_08000 [Staphylococcus aureus subsp.
           aureus 132]
          Length = 815

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|84514752|ref|ZP_01002116.1| hypothetical protein SKA53_11039 [Loktanella vestfoldensis SKA53]
 gi|84511803|gb|EAQ08256.1| hypothetical protein SKA53_11039 [Loktanella vestfoldensis SKA53]
          Length = 619

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 24/265 (9%)

Query: 376 NNKNSKSPRFWFNTDYRRQNV-EENSKAKSTAQSLEAGSIFSITSDL---LDSSSRFLGE 431
           + K ++    W+ +   R  + +E S A     +++    F++ S     L  +S     
Sbjct: 124 SQKIAQKFYKWYRSKKLRAAMIDEISFAVVNGTTIDPRMCFALYSGKKYMLPGNSAKRLW 183

Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
           ++G  DL    +    +E            + +P     DL+     +          +G
Sbjct: 184 RNGYCDLNVWVEPSYRQE------APVDRDDAKPLGSLQDLIDFAIATPLERQILLDWLG 237

Query: 492 MALLGGN-KAQRFIHIRGVG-GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
            +L   N K +  I +     G+GKSTL+ L +  FG     N    + +  R      +
Sbjct: 238 WSLKHENLKPRWAIFLYSETKGTGKSTLLELGQALFGEANTANENGIEGLTQRFSIDSLS 297

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
              +       + + S ++  ++     +K    G+     +   +            + 
Sbjct: 298 KKFI---KVEEVKLSSHSDAGNK-----MKDYITGETAMLDVKNLSKQ-TIRLKCAFMLT 348

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDK 634
            N         +   RRY +I  + 
Sbjct: 349 TNHKPTWLEGGE---RRYFLIDMNH 370


>gi|123366910|ref|XP_001296824.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121876636|gb|EAX83894.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 181

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 15/177 (8%)

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             +N+  +K +           Y ++      +    +  N         D   RRY+V+
Sbjct: 3   KVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNTVPMKLESSD---RRYVVV 59

Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689
                   +D  +   L    T +                 +   IP    + ++   + 
Sbjct: 60  R-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEA 116

Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
             +    +ID+     +    +  SL  SY +Y ++   Y     S RT   N+K  
Sbjct: 117 NKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 166


>gi|66395590|ref|YP_239994.1| ORF002 [Staphylococcus phage 3A]
 gi|62635936|gb|AAX91047.1| ORF002 [Staphylococcus phage 3A]
          Length = 815

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  I          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKI-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL  +   +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|258445560|ref|ZP_05693742.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257855607|gb|EEV78540.1| conserved hypothetical protein [Staphylococcus aureus A6300]
          Length = 815

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|317969941|ref|ZP_07971331.1| hypothetical protein SCB02_10414 [Synechococcus sp. CB0205]
          Length = 287

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 47/200 (23%), Gaps = 30/200 (15%)

Query: 19  KLIPLRLGDKRPQRLGK---WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDE 75
            LIP R     P    K   W                  G       + L+A D D    
Sbjct: 4   ALIPCRGKAPIPMNWQKPDIWLGLSPIGCLHYHPRVTAIGLRT---SEALFALDFDGHST 60

Query: 76  KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE------------------GIKKKK 117
                            I R G + ++   +R   E                   +K   
Sbjct: 61  HGYALACGIDPFALTWTISRTGNEWRLKQLWRTTPEQRAQLPYGPFSWKHVTQAALKDDN 120

Query: 118 TTESTQGH-LDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
                +G  L++     +  +    HP    +Y W         E   +  +    ++  
Sbjct: 121 GKVLKKGEALEVFASSSRQVIVLGRHPD-GDDYYWREGKGP---EALAVAPDALWNWVLT 176

Query: 176 FFQEITVPLVKDKKSIIPSK 195
                      +++    ++
Sbjct: 177 MAAAAGERRPSERRQASTTR 196


>gi|304382989|ref|ZP_07365470.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335908|gb|EFM02157.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 426

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 57/197 (28%), Gaps = 24/197 (12%)

Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
                L    F  + E+ MDY        L    K    + +     +GKST +N +K  
Sbjct: 117 PHIKALARHIFGEQYELGMDYLQLLY---LHPIEKLPILLLVSEERNTGKSTFLNFLKAL 173

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
           FG     N       Q                 G  ++++ E   +   ++ ++K ++  
Sbjct: 174 FGGNVTFNTNEDFRSQFN-----------SDWAGKLLILVDEVLLDRREDSERLKNLSTT 222

Query: 585 DCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDAS 642
                     +       A F       +   + +  +  +W R +       I   D  
Sbjct: 223 LSYKVEAKGKDRDEISFFAKFVLCSNNERLPVIIDTGETRYWVRKV-----GRIEKDDTD 277

Query: 643 FAQKLETKYTLEAKKWF 659
           F Q+   +       + 
Sbjct: 278 FLQR-VKEEIPAFLYFL 293


>gi|257428240|ref|ZP_05604638.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257275081|gb|EEV06568.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
          Length = 815

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|134291212|ref|YP_001114981.1| putative DNA replication primase protein [Burkholderia
           vietnamiensis G4]
 gi|134134401|gb|ABO58726.1| putative DNA replication primase protein [Burkholderia
           vietnamiensis G4]
          Length = 620

 Score = 49.9 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 12/94 (12%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
             +  W+ +  A+        +G EI   WS+    Y+E      W +        +A  
Sbjct: 22  DDYGTWVDMAFALKQGF--GDEGFEIWDAWSRTAPNYNERAARTTWRS-------ASASG 72

Query: 284 RSTFTSLFY---HHGKLIPKGLLASRFSDAYNKA 314
             T  +LF+    HG  + +    +R +     +
Sbjct: 73  GKTLATLFWQARQHGFDLKRANYPNRMTTVLAAS 106


>gi|258420307|ref|ZP_05683254.1| virulence-associated protein E [Staphylococcus aureus A9719]
 gi|295407569|ref|ZP_06817362.1| hypothetical protein SMAG_02738 [Staphylococcus aureus A8819]
 gi|297246599|ref|ZP_06930432.1| hypothetical protein SLAG_02667 [Staphylococcus aureus A8796]
 gi|257843732|gb|EEV68134.1| virulence-associated protein E [Staphylococcus aureus A9719]
 gi|294967588|gb|EFG43624.1| hypothetical protein SMAG_02738 [Staphylococcus aureus A8819]
 gi|297176557|gb|EFH35822.1| hypothetical protein SLAG_02667 [Staphylococcus aureus A8796]
          Length = 815

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|256006214|ref|ZP_05431112.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
           2360]
 gi|255989822|gb|EEU00006.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
           2360]
          Length = 149

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 26/115 (22%)

Query: 8   EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49
           + A +       +IPL                     KRP   G ++      ++I+K  
Sbjct: 7   DAALKYAEANIPVIPLHWICEGGLCSCKAGSNCDSRGKRPLYTGWYKNSTTDVKQINKWW 66

Query: 50  ---PACGFGFVCGVGEQPLYAFDID----SKDEKTANTFKDTFEILHGTPIVRIG 97
              P    G   G       A D+D              ++    L   P   +G
Sbjct: 67  RKSPNANIGITTGEKS-GWLALDVDMVAMKPYLHLKQHMENFLIRLLLLPAEEVG 120


>gi|258448845|ref|ZP_05696955.1| virulence-associated protein E [Staphylococcus aureus A6224]
 gi|257857882|gb|EEV80773.1| virulence-associated protein E [Staphylococcus aureus A6224]
          Length = 815

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQIDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|260787763|ref|XP_002588921.1| hypothetical protein BRAFLDRAFT_125428 [Branchiostoma floridae]
 gi|229274093|gb|EEN44932.1| hypothetical protein BRAFLDRAFT_125428 [Branchiostoma floridae]
          Length = 405

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 94/313 (30%), Gaps = 39/313 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  +
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDV 98

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLV 473
               +D +       +  + L             K   +        V     +    L 
Sbjct: 99  -DKAIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLD 154

Query: 474 SGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
               E +EV++           +G+A        + + + G  G+GK+ L   + +   +
Sbjct: 155 KQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTD 207

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
              I    S+++Q    E  +    L  +       I   +E D I +++++  +GGD  
Sbjct: 208 CTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSE 267

Query: 588 TAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRD 640
             R    L       E+  +    +  N+   +   D A  R  R    I F  P  +  
Sbjct: 268 VQRTMLELLNQLDGFEAHQNIKVVMATNRIDIL---DSALLRPGRIDRKIEFPAPNEDAR 324

Query: 641 ASFAQKLETKYTL 653
           A   +    K  L
Sbjct: 325 ADILKIHSRKMNL 337


>gi|123318375|ref|XP_001292930.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121869085|gb|EAX80000.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|282848866|ref|ZP_06258256.1| primase C-terminal domain protein [Veillonella parvula ATCC 17745]
 gi|282581371|gb|EFB86764.1| primase C-terminal domain protein [Veillonella parvula ATCC 17745]
          Length = 693

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 19/131 (14%)

Query: 219 EEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSK-QGSTYDEENFNYKWDTFDFEEI 277
            +    S++EW+ V +A+H E         I   WS   G  + E     KW++F     
Sbjct: 14  IDPAQCSYEEWLNVGLALHQE----GYPMFIWEEWSADDGERFHEGECAAKWESFGRYTG 69

Query: 278 GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337
                K  T  ++     +           ++       ++      L    T   Y+  
Sbjct: 70  -----KLVTGATITQMAKENGWTSKRKLENNE-------ALSFDSMVLA--TTPEQYQVV 115

Query: 338 KNNVYIWSLTL 348
             N    S   
Sbjct: 116 DKNWIEESDVH 126


>gi|290769632|gb|ADD61413.1| putative protein [uncultured organism]
          Length = 415

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 32/271 (11%)

Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR---FLGEQDGILDLETGQKVKPTKELY 451
            +        + + +      S+    LD        + + DG   + +    +     +
Sbjct: 32  RIINQPMMNGSFRKMRVEWKMSVF--RLDHGKDEAALIPKYDGFCTMPSHTDYQLNVNNF 89

Query: 452 ITKSTGTPFVEGE-PSQEFLDLVSGYFESEEV--MDYFTRCVGMALLGGNKAQRFIHIRG 508
                    +  E        L+   F  +    MDY        L    K    + +  
Sbjct: 90  YNLYEPITHIPKEGEFNHIQSLIEHIFGEQYKLGMDYLQLLY---LKPTQKLPILLLVSE 146

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
              +GKST +N +K  F      N       Q                 G  ++++ E  
Sbjct: 147 ERNTGKSTFLNFLKALFQENVTFNTNEDFRSQFN-----------ADWAGKLMIVVDEVL 195

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWR 625
            N   ++ ++K ++            + Y E        +  N     +++   +  +W 
Sbjct: 196 LNRREDSERLKNLSTAHSYKMEAKGKDRY-EVQFFAKFVLCSNNENFPVYIEPEETRYWV 254

Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           R I       +   D SF QKL+        
Sbjct: 255 RKI-----SRLGKDDTSFLQKLQ-DEIPAFL 279


>gi|254975143|ref|ZP_05271615.1| virulence-associated E domain protein [Clostridium difficile
           QCD-66c26]
 gi|255314270|ref|ZP_05355853.1| virulence-associated E domain protein [Clostridium difficile
           QCD-76w55]
 gi|255516950|ref|ZP_05384626.1| virulence-associated E domain protein [Clostridium difficile
           QCD-97b34]
 gi|255650052|ref|ZP_05396954.1| virulence-associated E domain protein [Clostridium difficile
           QCD-37x79]
 gi|260686789|ref|YP_003217922.1| putative virulence-associated protein e [Clostridium difficile
           R20291]
 gi|306519587|ref|ZP_07405934.1| putative virulence-associated protein e; putative
           virulence-associated protein e [Clostridium difficile
           QCD-32g58]
 gi|260212805|emb|CBE03973.1| putative virulence-associated protein e [Clostridium difficile
           R20291]
          Length = 805

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 83/699 (11%), Positives = 179/699 (25%), Gaps = 123/699 (17%)

Query: 23  LRLGDKRPQRLGKWEE-QLLSSEKIDKLPACGFGFVCGVGEQP-----------LYAFDI 70
           +    K  +    + E + +S  + D++   G GFV G  +             +   DI
Sbjct: 43  VNRLSKTLRTQETYTEYRKMSKTEKDRVKDVG-GFVGGSLKNGRRKAENIANRSIITLDI 101

Query: 71  D--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR----MNKEGIKKKKTTESTQG 124
           D  +KD     T  + +  L  +        P+  +       +  E  +      +   
Sbjct: 102 DYANKDIWEDITLLNDYACLMYSTHSHTENNPRYRLVIPLTRPVLPEEYQAISRMIADTI 161

Query: 125 HLDI-----LGCGQYFVAYNIHPKTKKEYTWTTP--PHRFKVEDTPLLSEEDVEYLFKFF 177
            +D+         +     +        + +      +  ++ D  L   +   +     
Sbjct: 162 GIDMFDDTTYQPHRLMYFPSTSIDGDYIFKFQDGEFLNPNEILDLYLDWTDVSYWPESSR 221

Query: 178 QEITVPLVKDKKSIIPSKTWT-------NNNNRQYTNREITAFLSCFGEEFYNGS----- 225
           +         K+     K           +      N     ++    E  Y  S     
Sbjct: 222 ERQKFNTQLKKQQDPIEKAGIIGAFCRSYSIKETIENFLNEVYIPGIDETRYTYSEGSTS 281

Query: 226 -----HDEWIPVVMAVHHETRGSSKGKEIAR-----RWSKQGSTYDEENFNYKWDTFDFE 275
                +D+      + H     S             ++ +       E    +  +F   
Sbjct: 282 GGVVIYDD--KFSYSHHGTDPASGILCNAFDLVRIHKFGELDEDAKPETPVNRLPSFTRM 339

Query: 276 EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK 335
               ++  +    ++   +            F D                   D K  YK
Sbjct: 340 SEFASSDTKVR-KTIGRENLDKAKDDFGDIDFEDDEWLTRLDY----------DNKGSYK 388

Query: 336 KDKNNV--YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
           K  NN+  +I +    K   +   F          +        K+ K   +  + D   
Sbjct: 389 KTTNNILMFIENDPYLKGKIAYNEF------SNRAVVLGKLPWRKDDKLNDWNDSDDSGL 442

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
           ++  E     S+   +              + +  +  ++                    
Sbjct: 443 RHHIETIYNISSPSKV--------------NDALIIAFENNTFHPIKDYL---------- 478

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEE-------VMDYFTRCVGMALLGGNKAQRFIHI 506
                  ++ +  +    L+  Y  +E+       +       V      G K    + +
Sbjct: 479 -----NSLKWDGIKRVDTLLIDYLGAEDNHYTRTIIRKVLVAAVARVFNPGIKFDNMMVL 533

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G  G GKST    IK   G+ Y  +               +   +  +L G  ++ + E
Sbjct: 534 SGPQGMGKSTF---IKKLGGDWYSDSLTTV-----------QGKEAYEQLQGVWLLEMGE 579

Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
                + +   +K          R+ YG   S            N   F+R+      RR
Sbjct: 580 MMATKKADIEAVKHFLSKSEDIYRVAYGKRTSRFLRQCVVIGTTNDKEFLRDKTG--NRR 637

Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
           +  I  D  +   + S           +     ++  KA
Sbjct: 638 FWPI--DTGVKKVNKSIFNGQLDNERNQIWAEAVELCKA 674


>gi|123385921|ref|XP_001299188.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121879974|gb|EAX86258.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 57/187 (30%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y ++      +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLIIDKVGVVERKYKDSRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +   +             +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNYLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    ++D+     + +  +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDEYKQYCQE---YGYMPASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|19920408|ref|NP_608447.1| Pros45 [Drosophila melanogaster]
 gi|14286160|sp|O18413|PRS8_DROME RecName: Full=26S protease regulatory subunit 8
 gi|2815905|gb|AAC63219.1| Pros45 proteosome subunit homolog [Drosophila melanogaster]
 gi|7295522|gb|AAF50835.1| Pros45 [Drosophila melanogaster]
 gi|15291775|gb|AAK93156.1| LD26005p [Drosophila melanogaster]
 gi|220945798|gb|ACL85442.1| Pros45-PA [synthetic construct]
 gi|220955554|gb|ACL90320.1| Pros45-PA [synthetic construct]
          Length = 405

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 95/328 (28%), Gaps = 37/328 (11%)

Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN-SKSPRFWFNTDYRRQNVE 397
           +    +     +    +   +    +++  L  +  + N               +   V 
Sbjct: 14  HKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVG 73

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRF--------LGEQDGILDLETGQKVKPTKE 449
           E  K     + L            LD +           +  ++    L      K    
Sbjct: 74  EVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPL 133

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRF 503
           + +      P    E        +      +EV++           +G+A        + 
Sbjct: 134 VSLMMVEKVPDSTYEMVGGLDKQIKEI---KEVIELPVKHPELFDALGIA------QPKG 184

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
           + + G  G+GK+ L   + +       I    S+++Q    E  +    L  +       
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243

Query: 564 ISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNP 619
           I   +E D I +++I+  +GGD    R    L       E+  +    +  N+   +   
Sbjct: 244 IIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL--- 300

Query: 620 DDAWWR--RY-IVIPFDKPIANRDASFA 644
           D A  R  R    I F  P  N +A   
Sbjct: 301 DPALLRPGRIDRKIEF--PPPNEEARLD 326


>gi|257432446|ref|ZP_05608809.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283325|gb|EEV13457.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           E1410]
          Length = 815

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL  +   +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|325298294|ref|YP_004258211.1| hypothetical protein Bacsa_1151 [Bacteroides salanitronis DSM
           18170]
 gi|330995851|ref|ZP_08319747.1| hypothetical protein HMPREF9442_00819 [Paraprevotella xylaniphila
           YIT 11841]
 gi|324317847|gb|ADY35738.1| hypothetical protein Bacsa_1151 [Bacteroides salanitronis DSM
           18170]
 gi|329574382|gb|EGG55953.1| hypothetical protein HMPREF9442_00819 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 413

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 59/210 (28%), Gaps = 29/210 (13%)

Query: 457 GTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
                  E        LV   F  + E+ MDY        L    K    + +     +G
Sbjct: 95  PIDHRPQEGDLSHIQSLVRHIFGEQYELGMDYLQLLY---LQPIQKLPILLLVSEERNTG 151

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KST +N +K  F      N    +  ++   +            G  ++++ E   N   
Sbjct: 152 KSTFLNFLKALF-----QNNVTFNTNEDFRSQFNS------DWAGKLLIVVDEVLLNRRE 200

Query: 574 NAAKIKQMTGGDCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
           ++ ++K ++            +       A F           + +  +  +       +
Sbjct: 201 DSERLKNLSTTLSYKVEAKGKDRDEIAFFAKFVLCSNNEHLPVIIDAGETRY-------W 253

Query: 633 DKPIAN---RDASFAQKLETKYTLEAKKWF 659
            + I      D  F QKL          + 
Sbjct: 254 VRKIDRLQSDDTDFLQKL-KAEIPAFLHFL 282


>gi|21283137|ref|NP_646225.1| hypothetical protein MW1408 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|87161308|ref|YP_494107.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|161509688|ref|YP_001575347.1| hypothetical protein USA300HOU_1459 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|262052907|ref|ZP_06025090.1| hypothetical protein SA930_0248 [Staphylococcus aureus 930918-3]
 gi|282905866|ref|ZP_06313721.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282921767|ref|ZP_06329484.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|294848487|ref|ZP_06789233.1| hypothetical protein SKAG_00551 [Staphylococcus aureus A9754]
 gi|300911907|ref|ZP_07129350.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|21204577|dbj|BAB95273.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
 gi|87127282|gb|ABD21796.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|160368497|gb|ABX29468.1| hypothetical bacteriophage protein [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|259159214|gb|EEW44275.1| hypothetical protein SA930_0248 [Staphylococcus aureus 930918-3]
 gi|282331158|gb|EFB60672.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282594029|gb|EFB99018.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|294824513|gb|EFG40936.1| hypothetical protein SKAG_00551 [Staphylococcus aureus A9754]
 gi|300886153|gb|EFK81355.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302333127|gb|ADL23320.1| virulence-associated E family protein [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|315197727|gb|EFU28061.1| hypothetical bacteriophage protein [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320142766|gb|EFW34569.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           MRSA177]
          Length = 815

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL  +   +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|255092533|ref|ZP_05322011.1| virulence-associated E domain protein [Clostridium difficile CIP
           107932]
 gi|260683193|ref|YP_003214478.1| putative virulence-associated protein e [Clostridium difficile
           CD196]
 gi|260209356|emb|CBA62786.1| putative virulence-associated protein e [Clostridium difficile
           CD196]
          Length = 805

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 18/184 (9%)

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           +       V      G K    + + G  G GKST    IK   G+ Y  +         
Sbjct: 509 IRKVLVAAVARVFNPGIKFDNMMVLSGPQGMGKSTF---IKKLGGDWYSDSLTTV----- 560

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
                 +   +  +L G  ++ + E     + +   +K          R+ YG   S   
Sbjct: 561 ------QGKEAYEQLQGVWLLEMGEMMATKKADIEAVKHFLSKSEDIYRVAYGKRTSRFL 614

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661
                    N   F+R+      RR+  I  D  +   + S           +     ++
Sbjct: 615 RQCVVIGTTNDKEFLRDKTG--NRRFWPI--DTGVKKVNKSIFNGQLDNERNQIWAEAVE 670

Query: 662 GVKA 665
             KA
Sbjct: 671 LCKA 674


>gi|293371872|ref|ZP_06618276.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292633118|gb|EFF51695.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 415

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 32/271 (11%)

Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR---FLGEQDGILDLETGQKVKPTKELY 451
            +        + + +      S+    LD        + + DG   + +    +     +
Sbjct: 32  RIINQPMMNGSFRKMRVEWKMSVF--RLDHGKDEAALIPKYDGFCTMPSHTDYQLNVNNF 89

Query: 452 ITKSTGTPFVEGE-PSQEFLDLVSGYFESEEV--MDYFTRCVGMALLGGNKAQRFIHIRG 508
                    +  E        L+   F  +    MDY        L    K    + +  
Sbjct: 90  YNLYEPITHIPKEGEFNHIQSLIEHIFGEQYKLGMDYLQLLY---LKPTQKLPILLLVSE 146

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
              +GKST +N +K  F      N       Q                 G  ++++ E  
Sbjct: 147 ERNTGKSTFLNFLKALFQENVTFNTNEDFRSQFN-----------ADWAGKLMIVVDEVL 195

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWR 625
            N   ++ ++K ++            + Y E        +  N     +++   +  +W 
Sbjct: 196 LNRREDSERLKNLSTAHSYKMEAKGKDRY-EVQFFAKFVLCSNNENFPVYIEPEETRYWV 254

Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           R I       +   D SF QKL+        
Sbjct: 255 RKI-----SRLGKDDTSFLQKLQ-DEIPAFL 279


>gi|16579844|gb|AAL26659.1| unknown [Staphylococcus aureus]
          Length = 276

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 79/212 (37%), Gaps = 15/212 (7%)

Query: 340 NVYIWSLTLDKITASIMNFL-------VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
           N+Y +     K   +I+  +            ++F   ++        +           
Sbjct: 67  NIYSYFGIQKKPNDTILVEMMISIFNIKRFDSELFVFKDKGWQKVNEDELQGLISKMIQV 126

Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
              + +   + S  +++  G   SI  + L  + + +     + +L+  + V+ + +++ 
Sbjct: 127 L--LVDYKPSLSILKNVVVGLQNSIDVEELVENKQSIACGHNMFNLDAFEVVENSIKIFS 184

Query: 453 TKSTGTPFVEGE-----PSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHI 506
                   V+ +         F   +  +     ++  +  + + + L    K +R + +
Sbjct: 185 ATRLNLELVKSDVITEKTPPHFNRYMLEFANFDSDLQYFLFQHIAVLLTANTKYRRALLL 244

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
            G   +GKS ++NL++  F ++ +++   +++
Sbjct: 245 YGGSKNGKSVVINLVRSFFYSEDIVSKALNEL 276


>gi|327198747|emb|CCA61448.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
          Length = 161

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 15/159 (9%)

Query: 626 RYIVIPFDKPIA--NRDAS---FAQKLETKYTLEAKKWFLKGVKAYI----SKGL-DVDI 675
           R +++PF         D     F +        +  +  L  +K +I      G+ D+++
Sbjct: 3   RLVIVPFRSKFVGGEADPDTYTFQRDCNISDKFKLWRSAL--LKHFISHCRKNGIADMEM 60

Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
           P   +  K E  +  +    W+ D     E  + +   L + Y +    E  +  K I  
Sbjct: 61  PSSMVDWKNEILEENNVVAEWLWDAVRPQEGSFVQLAELRERYKKDHPHERAFKNKDI-E 119

Query: 736 RTVTLNLKQKGFIGGIK--REKIEKEWKSKRIIKGLKLK 772
           R +      KG     +          K  R+     L 
Sbjct: 120 RMINSAFNAKGAYVKDQHYHYVDTTRKKVNRVFVNFDLN 158


>gi|320140662|gb|EFW32516.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           MRSA131]
          Length = 815

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL  +   +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|262049887|ref|ZP_06022749.1| hypothetical protein SAD30_0343 [Staphylococcus aureus D30]
 gi|259162036|gb|EEW46616.1| hypothetical protein SAD30_0343 [Staphylococcus aureus D30]
          Length = 815

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMKPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL  +   +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|257051194|ref|YP_003129027.1| hypothetical protein Huta_0105 [Halorhabdus utahensis DSM 12940]
 gi|256689957|gb|ACV10294.1| hypothetical protein Huta_0105 [Halorhabdus utahensis DSM 12940]
          Length = 382

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 58/235 (24%), Gaps = 29/235 (12%)

Query: 22  PLRLGDKRPQRLGKWE-EQLLSSEKID---------KLPACGFGFVCGVGEQP---LYAF 68
           PL    K P    ++  +   + E +          +  + GF    G  E     L   
Sbjct: 2   PLTDDSKNPAIRDRFGLDNPRAKELLRPPDEAVEAIRSGSRGFVLYAGRPEHGTEELVFT 61

Query: 69  DIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
           D D       N    T        +VR G        +R N   +          G  +I
Sbjct: 62  DHDDVGLWPPNETPRTL-------LVRSGSGTGYHQTYR-NSGSVDNAHGKGELAGAGEI 113

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED---TPLLSEEDVEYLFKFFQEITVPLV 185
                Y VA      +   Y     P    + +    P L   +         +      
Sbjct: 114 RAKNWYVVAPGSIHPSGGIYHQVQNPGIGTIREEHIPPELRPSNGASKGSSHGDPKPLEP 173

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN-----GSHDEWIPVVMA 235
            D + +          N      +    +S   +   +     GS+       MA
Sbjct: 174 DDIEDLGKDFDPDAVTNEWGATVQEARIVSKKLDHLLSTYNPGGSYPSTSEADMA 228


>gi|15617554|ref|NP_258354.1| DNA helicase [Spodoptera litura NPV]
 gi|15553290|gb|AAL01768.1|AF325155_80 DNA helicase [Spodoptera litura NPV]
          Length = 1235

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 12/155 (7%)

Query: 486  FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
                     +  +  +  I++ G    GKS+  +L+              S     +  +
Sbjct: 927  MMHFTASLAIPSDYEKMCIYLNGESNCGKSSFFDLLDTII--VAHKRDSMSYNTSKKETD 984

Query: 546  AGKANPSLIRLMGSRIVIISETNENDEINAAKIK-QMTGGDCMTARLNYGNTYSESPASF 604
              +AN  + +L           NE  E N A  K         +    Y  +  +  A++
Sbjct: 985  EMEANKLISQLY--------VINEMKECNDAFFKNSADSSKSNSVCRKYEGSQ-KYEANY 1035

Query: 605  TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
               IV NK L +++ D     R+ V+         
Sbjct: 1036 KLLIVNNKPLCIQDYDKGVRNRFCVVYMKHVFVEN 1070


>gi|329730638|gb|EGG67023.1| Virulence-associated protein E [Staphylococcus aureus subsp. aureus
           21193]
          Length = 815

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL  +   +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|2245467|gb|AAC48284.1| DUG [Drosophila melanogaster]
          Length = 405

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 96/328 (29%), Gaps = 37/328 (11%)

Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN-SKSPRFWFNTDYRRQNVE 397
           +    +     +    +   +    +++  L  +  + N               +   V 
Sbjct: 14  HKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVG 73

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRF--------LGEQDGILDLETGQKVKPTKE 449
           E  K     + L        +   LD +           +  ++    L      K    
Sbjct: 74  EVVKPMDKKKVLVKVHPEGKSVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPL 133

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRF 503
           + +      P    E        +      +EV++           +G+A        + 
Sbjct: 134 VSLMMVEKVPDSTYEMVGGLDKQIKEI---KEVIELPVKHPELFDALGIA------QPKG 184

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
           + + G  G+GK+ L   + +       I    S+++Q    E  +    L  +       
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243

Query: 564 ISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNP 619
           I   +E D I +++I+  +GGD    R    L       E+  +    +  N+   +   
Sbjct: 244 IIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL--- 300

Query: 620 DDAWWR--RY-IVIPFDKPIANRDASFA 644
           D A  R  R    I F  P  N +A   
Sbjct: 301 DPALLRPGRIDRKIEF--PPPNEEARLD 326


>gi|282911095|ref|ZP_06318897.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282324790|gb|EFB55100.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|312438075|gb|ADQ77146.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 815

 Score = 49.5 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL  +   +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|123189625|ref|XP_001282100.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121838464|gb|EAX69170.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 181

 Score = 49.5 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 23/181 (12%)

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             +N+  +K +           Y +       +    +  N         D   RRY+V+
Sbjct: 3   KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 59

Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689
                   +D  +   L    T +                 +   IP    + ++   + 
Sbjct: 60  R-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEA 116

Query: 690 TDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
             +    +ID    +C D          SL  SY +Y ++   Y     S RT   N+K 
Sbjct: 117 NKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAASKRTFLANVKS 165

Query: 745 K 745
            
Sbjct: 166 L 166


>gi|325299325|ref|YP_004259242.1| hypothetical protein Bacsa_2216 [Bacteroides salanitronis DSM
           18170]
 gi|324318878|gb|ADY36769.1| hypothetical protein Bacsa_2216 [Bacteroides salanitronis DSM
           18170]
          Length = 396

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 49/304 (16%)

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
              + +   ++ +  +P  +    K    W N      +       K+   ++     F 
Sbjct: 4   EEYMRVGTTLYKVVNQPCASGGYEKRRVIWNN------STLRQDYGKNYLATVPKYDGFC 57

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
              D L+      G  +        + ++ T ++                     LV   
Sbjct: 58  TVPDHLNYRKEIDGFLN------LYEPIEHTPQIG-------------DFPNIRSLVLHI 98

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS-GKSTLMNLIKYAFGNQYVINAEA 535
           F   E  +     + +  L   +    + +     + GKST +N +K  FG+    N   
Sbjct: 99  FG--EQYNLGLDYLQLLFLQPLQKLPILLLVSEERNTGKSTFLNFLKAVFGDNVTFNTNE 156

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
               Q                 G  ++++ E   N   ++ ++K ++           G 
Sbjct: 157 DFRSQFN-----------SDWAGKLLIVVDEVLLNRREDSERLKNLSTTFNYKVEAK-GK 204

Query: 596 TYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYT 652
             +E        +  N      + +  +  +W R I      P+ N D +F QKL  +  
Sbjct: 205 DRTEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRKI-----NPLQNDDTNFLQKL-KEEI 258

Query: 653 LEAK 656
               
Sbjct: 259 PAFL 262


>gi|329960381|ref|ZP_08298806.1| hypothetical protein HMPREF9446_00365 [Bacteroides fluxus YIT
           12057]
 gi|328532819|gb|EGF59601.1| hypothetical protein HMPREF9446_00365 [Bacteroides fluxus YIT
           12057]
          Length = 396

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 49/304 (16%)

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
              + +   ++ +  +P  +    K    W N      +       K+   ++     F 
Sbjct: 4   EEYMRVGTTLYKVVNQPCASGGYEKRRVIWNN------STLRQDYGKNYLATVPKYDGFC 57

Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
              D L+      G  +        + ++ T ++                     LV   
Sbjct: 58  TVPDHLNYRKEIDGFLN------LYEPIEHTPQIG-------------DFPNIRSLVLHI 98

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS-GKSTLMNLIKYAFGNQYVINAEA 535
           F   E  +     + +  L   +    + +     + GKST +N +K  FG+    N   
Sbjct: 99  FG--EQYNLGLDYLQLLFLQPLQKLPILLLVSEERNTGKSTFLNFLKAVFGDNVTFNTNE 156

Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
               Q                 G  ++++ E   N   ++ ++K ++           G 
Sbjct: 157 DFRSQFN-----------SDWAGKLLIVVDEVLLNRREDSERLKNLSTTFNYKVEAK-GK 204

Query: 596 TYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYT 652
             +E        +  N      + +  +  +W R I      P+ N D +F QKL  +  
Sbjct: 205 DRTEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRKI-----NPLQNDDTNFLQKL-KEEI 258

Query: 653 LEAK 656
               
Sbjct: 259 PAFL 262


>gi|123182477|ref|XP_001280687.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121833435|gb|EAX67757.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y ++      +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     +    +  SL  SY +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|282927340|ref|ZP_06334958.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282590664|gb|EFB95740.1| conserved hypothetical protein [Staphylococcus aureus A10102]
          Length = 815

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCVFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL  +   +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|123237242|ref|XP_001287127.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121853963|gb|EAX74197.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 181

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 15/177 (8%)

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             +N+  +K +           Y +       +    +  N         D   RRY+V+
Sbjct: 3   KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESSD---RRYVVV 59

Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689
                   +D  +   L    T +                 +   IP    + ++   + 
Sbjct: 60  R-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEA 116

Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
             +    +ID+     +    +  SL  SY +Y ++   Y     S RT   N+K  
Sbjct: 117 NKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 166


>gi|123301825|ref|XP_001291078.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121864608|gb|EAX78148.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 194

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120

Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
            + ++   +   +    +ID+     + +  +  SL   Y +Y ++   Y     S RT 
Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE---YGYMAASKRTF 172

Query: 739 TLNLKQK 745
             N+K  
Sbjct: 173 LANVKSL 179


>gi|290891514|ref|ZP_06554572.1| hypothetical protein AWRIB429_1962 [Oenococcus oeni AWRIB429]
 gi|290478863|gb|EFD87529.1| hypothetical protein AWRIB429_1962 [Oenococcus oeni AWRIB429]
          Length = 265

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 83/287 (28%), Gaps = 36/287 (12%)

Query: 7   KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-----IDKLPACGFGFVCGVG 61
           +E A++    G  ++P+   +K P    K+ +Q   +E       ++ P           
Sbjct: 8   EEYAQRYAKAGMYVLPV--ANKHPII--KFADQPALTESQIHDIWEQHPNADIAVRT--- 60

Query: 62  EQPLYAFDID-SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
               +  DID  +D     + K+     + +  +           F M  +GI+ ++   
Sbjct: 61  -VDFFVVDIDKHQDNNGFKSLKEFNHNEYFSTTLTQKTAHGGAQMFYMKPKGIEVEQNIG 119

Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
             +G +D+      Y V                             S+E +  +     +
Sbjct: 120 WLKG-VDVKAHINNYVVIAPS-----------DGYQFVNHHKIVEASKELLRAIKPVNSQ 167

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239
             +P     K  I  K+ T     +     I   L   G    N +      +   +   
Sbjct: 168 YDIPESVRNKYHITEKSKTAELFER-----IAFGLGGSGMRNNNLTE----LIGGLLFRG 218

Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
               +  +             +E  FN  + +   +E+       +T
Sbjct: 219 VDPDAVLQLCRLTNQNSPQPLEESEFNKTYTSMLKKEMRRRNDTGTT 265


>gi|288925203|ref|ZP_06419138.1| conserved hypothetical protein [Prevotella buccae D17]
 gi|288337968|gb|EFC76319.1| conserved hypothetical protein [Prevotella buccae D17]
          Length = 415

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 57/197 (28%), Gaps = 24/197 (12%)

Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
                L    F  + E+ MDY        L    K    + +     +GKST +N +K  
Sbjct: 106 PHIEALARHIFGEQYELGMDYLQLLY---LQPIEKLPILLLVSEERNTGKSTFLNFLKAL 162

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
           FG     N       Q                 G  ++++ E   +   ++ ++K ++  
Sbjct: 163 FGGNVTFNTNEDFRSQFN-----------SDWAGKLLILVDEVLLDRREDSERLKNLSTT 211

Query: 585 DCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDAS 642
                     +       A F       +   + +  +  +W R +       I   D  
Sbjct: 212 LSYKVEAKGKDRDEISFFAKFVLCSNNERLPVIIDTGETRYWVRKV-----GRIEKDDTD 266

Query: 643 FAQKLETKYTLEAKKWF 659
           F Q+   +       + 
Sbjct: 267 FLQR-VKEEIPTFLYFL 282


>gi|255306560|ref|ZP_05350731.1| virulence-associated E domain protein [Clostridium difficile ATCC
           43255]
          Length = 805

 Score = 49.1 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 18/184 (9%)

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           +       V      G K    + + G  G GKST    IK   G+ Y  +         
Sbjct: 509 IRKVLVAAVARIFNPGIKFDNMMVLSGPQGMGKSTF---IKKLGGDWYSDSLTTV----- 560

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
                 +   +  +L G  ++ + E     + +   +K          R+ YG   S   
Sbjct: 561 ------QGKEAYEQLQGVWLLEMGEMMATKKADIEAVKHFLSKSEDIYRVAYGKRTSRFL 614

Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661
                    N   F+R+      RR+  I  D  +   + S           +     ++
Sbjct: 615 RQCVVIGTTNDKEFLRDKTG--NRRFWPI--DTGVKKINKSIFNGQLDNERNQIWAEAVE 670

Query: 662 GVKA 665
             KA
Sbjct: 671 LYKA 674


>gi|291225648|ref|XP_002732818.1| PREDICTED: Pros45-like [Saccoglossus kowalevskii]
          Length = 376

 Score = 48.7 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 94/303 (31%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 52  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 103

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 104 DKNIDMGDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 163

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +   + 
Sbjct: 164 EI---KEVIELPVKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDC 213

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++++  +GGD   
Sbjct: 214 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEV 273

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       ES  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 274 QRTMLELLNQLDGFESHKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEA 328

Query: 642 SFA 644
              
Sbjct: 329 RLD 331


>gi|215401469|ref|YP_002332773.1| helicase [Spodoptera litura nucleopolyhedrovirus II]
 gi|209484010|gb|ACI47443.1| helicase [Spodoptera litura nucleopolyhedrovirus II]
          Length = 1217

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 96/343 (27%), Gaps = 38/343 (11%)

Query: 314  AMFSIYKKGHFLYTADT-KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
            ++   Y              +Y       ++ S      +  +  FL  +KE + D    
Sbjct: 725  SLVREYADFFTCNRTKIINVFYDYLDKINFVDSFISTLSSPEM--FLSKLKETISDKKHH 782

Query: 373  PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
             +++++     RF  N+      +E++        + +             ++   L + 
Sbjct: 783  YDEDDEIGNIERFLNNSH-----LEDDDDDHEMTAADDEEPFMQNFYYNYYTTLSMLKKW 837

Query: 433  DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD----LVSGY---------FES 479
            +  +  +     +   +   T  T              D     V            F +
Sbjct: 838  N--VWWDKLIVRRHN-DDLNTWLTRFYMRIFMTKLNLDDYSSLFVKQIVMGYLYFRQFTN 894

Query: 480  EEVMD-YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
               ++   T   G    +  +  +  +++ G  GSGKS+   +  +         A  + 
Sbjct: 895  FNYVNSLVTMHFGAGTGIPTDYEKCCLYLNGKPGSGKSSFFAVFDHFIVVHKHDTANYTL 954

Query: 538  IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNT 596
              ++                   I  +   NE    + +  K         T    Y  +
Sbjct: 955  TKKDTNEMEAD----------KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGS 1004

Query: 597  YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
              +   +F   IV NK L + + D     R+ VI  D      
Sbjct: 1005 Q-KYEGNFKLLIVNNKPLHISDYDKGVRNRFAVIYTDHLFEEN 1046


>gi|330719218|ref|ZP_08313818.1| prophage DNA replication protein [Leuconostoc fallax KCTC 3537]
          Length = 272

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 23/177 (12%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL-------PACGFGFVCGV 60
           E  KQ    G  +       K     G +        ++               G     
Sbjct: 5   EHIKQYQQAGAYVFMALPNQKHNGIAGGFHNSFNKWVELKDWIKRHSDYQNGNVGIDL-- 62

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTP------IVRIGQKPKILIPFRMNKEGIK 114
            +  L   DID  +     +    F+  H  P       ++      +   + +    IK
Sbjct: 63  SKSNLVVVDIDKHEHNGMASILAWFKTHHIEPDTIQDTYIKRTPTGGLHAFYLIPNGQIK 122

Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
            K    + +G +D+L      VA ++  +   +Y   T   + K      + +   +
Sbjct: 123 PKHVINAIKG-VDVLSETGVTVAPSMIDE--GQYRQITAFDKIKP-----VPQWVYD 171


>gi|297591003|ref|ZP_06949641.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           MN8]
 gi|297575889|gb|EFH94605.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           MN8]
          Length = 815

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|209363581|ref|YP_002267999.1| virulence-associated protein E [Staphylococcus phage phi2958PVL]
 gi|208973082|dbj|BAG74398.1| virulence-associated protein E [Staphylococcus phage phi2958PVL]
          Length = 815

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|300924604|ref|ZP_07140566.1| ATPase, AAA family [Escherichia coli MS 182-1]
 gi|300419235|gb|EFK02546.1| ATPase, AAA family [Escherichia coli MS 182-1]
          Length = 373

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 85/259 (32%), Gaps = 39/259 (15%)

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           +  D +       + +D   + +G+      +  R     G  G GK+   + +    G 
Sbjct: 104 QIEDSLDQIILERKHIDRL-KALGL------QPTRSAIFVGPPGVGKTLTASWLAQKLGV 156

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETN-----ENDEINAAKIKQM 581
            + +    + +             +L     G  ++++ E +      +D+ +  ++K++
Sbjct: 157 PFYVLDLTAVMSSYLGKSGNNLRAALDFAKKGPCVLLLDEIDSIAKKRSDDSDVGELKRL 216

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-IVIPFDKPIANRD 640
                            E P+S       N    +   D A WRR+ +V+ F+KP +   
Sbjct: 217 VT--------VILQEVDEWPSSSLLLAATNFAELI---DPALWRRFDLVLNFEKPDSESI 265

Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ------GTD--T 692
               ++          +W       + ++           ++  + R+       +D   
Sbjct: 266 KEAIKRFSGPDYAIFARWIDLLAIMFKNESFSN-----IERSINKFRRSVALGISSDEEL 320

Query: 693 YQAWIDDCC-DIGENLWEE 710
             ++I D   ++  N  +E
Sbjct: 321 IGSFIKDGLSELDRNERKE 339


>gi|268608984|ref|ZP_06142711.1| Primase 2 [Ruminococcus flavefaciens FD-1]
          Length = 743

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 25/183 (13%)

Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEE 263
           Y N  +   L           + +W  + MA+      S     +   WS +  + Y + 
Sbjct: 3   YKNDNLEELLEYIDPS--ELDYQQWCGIGMALK----DSGYDGSVWDTWSMRDAARYHQG 56

Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
               KW +F      + +    T  ++       +  G      +     A   +  + +
Sbjct: 57  ECEKKWRSF------NGSDTPVTAGTIVKMA---LDGGYHPPSKAPDKVLAWDDVIGEEY 107

Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM--KEDVFDLSEEPEDNNKNSK 381
            + +A+       D   + I    +    + I  +L ++    D+     E   +  +  
Sbjct: 108 TVTSAE-------DTQELPIHEPKIWDPASEIRRYLEALFDMNDIVGYVTEVWKDEADGG 160

Query: 382 SPR 384
             +
Sbjct: 161 KFK 163


>gi|237711319|ref|ZP_04541800.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229454014|gb|EEO59735.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 396

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 56/209 (26%), Gaps = 27/209 (12%)

Query: 457 GTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
                  E        LV   F  + E+ MDY        L    K    + +     +G
Sbjct: 78  PIDHRPQEGDLSHIQSLVRHIFGKQYELGMDYLQLLY---LQPIQKLPILLLVSEERNTG 134

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KST +N +K  F N    N       Q                 G  ++++ E   N   
Sbjct: 135 KSTFLNFLKALFQNNVTFNTNEDFRSQFN-----------SDWAGKLLIVVDEVLLNRRE 183

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
           ++ ++K ++           G    E        +  N        D    R      + 
Sbjct: 184 DSERLKNLSTTLSYKVEAK-GKDRDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWV 237

Query: 634 KPIAN---RDASFAQKLETKYTLEAKKWF 659
           + I      D  F QKL          + 
Sbjct: 238 RKIDRLQSDDTDFLQKL-KAEIPAFLHFL 265


>gi|237716127|ref|ZP_04546608.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407739|ref|ZP_06084287.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229443774|gb|EEO49565.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354547|gb|EEZ03639.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 744

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 56/198 (28%), Gaps = 21/198 (10%)

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV---SGYFESEEVMDYFTRCVGMAL 494
           +++         ++   S  T   + +   +    V      F  +    +    V  A+
Sbjct: 414 VDSDYAKPFNPFIHYFTSLQTWDGKTDHIGQLTKTVKAADQAFFEDSFRRWLVGMVACAI 473

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
               +  + + + G  G GKST +  +                    R       N    
Sbjct: 474 DDEAQNHQLMLLHGAQGKGKSTFVRHL-----------LPPELKDYYRNGMISPDNKD-- 520

Query: 555 RLMGSRIVIISETNENDEINAAK---IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
            L+     ++   +E D ++ A+   +K +   D M  R  Y           +     N
Sbjct: 521 HLLQMSSCLLINLDEFDTLSPARMQELKSLITQDVMNERKVYDIQNYTFIRRASFIASTN 580

Query: 612 KHLFVRNPDDAWWRRYIV 629
               +   D    RR + 
Sbjct: 581 NPHCLP--DIGENRRILF 596


>gi|7288076|emb|CAB81811.1| hypothetical protein [Sulfolobus islandicus]
          Length = 193

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 17/128 (13%)

Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE-------- 705
                 +  +    ++G  VD  +   +         D+   +I    + G         
Sbjct: 1   GIITTAIASISRAFAQG-HVDFEQSEEEVMGIWLSHIDSVYNFIKTYVEKGTIRLDPKNG 59

Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
           +LW     L   Y  Y  ++     + +  ++ +  L++            +K  +  R 
Sbjct: 60  DLWVPKDQLYNLYQNYCIEQG---FRGVGRKSFSRKLRE-----YFGITVSQKGAERDRA 111

Query: 766 IKGLKLKP 773
             G+ + P
Sbjct: 112 FVGIAVDP 119


>gi|123975725|ref|XP_001330380.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121896530|gb|EAY01679.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 213

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 60/216 (27%), Gaps = 18/216 (8%)

Query: 489 CVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPE 545
                L     K +  + I G  G+GK+T   +++     G          +I       
Sbjct: 7   WFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF--- 63

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
               N S+  +       +   +    +N+  +K +           Y +       +  
Sbjct: 64  ----NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANF 119

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
             +  N         D   RRY+V+        +D  +   L    T +           
Sbjct: 120 IMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMT 175

Query: 666 YISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDD 699
                 +   IP    + ++   +   +    +ID+
Sbjct: 176 LDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE 209


>gi|315128425|gb|EFT84433.1| virulence-associated E family protein [Staphylococcus aureus subsp.
           aureus CGS03]
          Length = 815

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|258455570|ref|ZP_05703527.1| virulence-associated protein E [Staphylococcus aureus A5937]
 gi|257862258|gb|EEV85029.1| virulence-associated protein E [Staphylococcus aureus A5937]
          Length = 815

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|298480878|ref|ZP_06999073.1| VirE N- domain protein [Bacteroides sp. D22]
 gi|298272901|gb|EFI14467.1| VirE N- domain protein [Bacteroides sp. D22]
          Length = 744

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 56/198 (28%), Gaps = 21/198 (10%)

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV---SGYFESEEVMDYFTRCVGMAL 494
           +++         ++   S  T   + +   +    V      F  +    +    V  A+
Sbjct: 414 VDSDYAKPFNPFIHYFTSLQTWDGKTDHIGQLTKTVKAADQAFFEDSFRRWLVGMVACAI 473

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
               +  + + + G  G GKST +  +                    R       N    
Sbjct: 474 DDEAQNHQLMLLHGAQGKGKSTFVRHL-----------LPPELKDYYRNGMISPDNKD-- 520

Query: 555 RLMGSRIVIISETNENDEINAAK---IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
            L+     ++   +E D ++ A+   +K +   D M  R  Y           +     N
Sbjct: 521 HLLQMSSCLLINLDEFDTLSPARMQELKSLITQDVMNERKVYDIQNYTFIRRASFIASTN 580

Query: 612 KHLFVRNPDDAWWRRYIV 629
               +   D    RR + 
Sbjct: 581 NPHCLP--DIGENRRILF 596


>gi|328793580|ref|XP_001120516.2| PREDICTED: hypothetical protein LOC724622 [Apis mellifera]
          Length = 1149

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            WI    +   ++      +   Y+ Y  +      K +ST      +KQ      ++  
Sbjct: 119 MWIKTHLEEDPDVSLPKQEVYDEYNMYCMRNSM---KPLSTADFGKVMKQ--VYPRVRPR 173

Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777
           ++     S+    G++ +   +S
Sbjct: 174 RLGTRGNSRYCYAGMRKRVKLDS 196


>gi|123194369|ref|XP_001283045.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121841646|gb|EAX70115.1| hypothetical protein TVAG_557960 [Trichomonas vaginalis G3]
          Length = 194

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
              +   +    +N+  +K +           Y +       +    +  N         
Sbjct: 6   CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65

Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679
           D   RRY+V+        +D  +   L    T +                 +   IP   
Sbjct: 66  D---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNPRQIPYT- 120

Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
            + ++   +   +    +ID    +C D          SL   Y +Y ++   Y     S
Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMTAS 168

Query: 735 TRTVTLNLKQK 745
            RT   N+K  
Sbjct: 169 KRTFLANVKNL 179


>gi|270009668|gb|EFA06116.1| hypothetical protein TcasGA2_TC008959 [Tribolium castaneum]
          Length = 1009

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +   +WI    +    L      + + Y+ Y  Q      K +S       +KQ  
Sbjct: 106 RSEINRTISWIKTHLEEDAALSLPKQEVYEEYTVYCTQN---QIKSLSQADFGKVMKQ-- 160

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK----LKP 773
               ++  ++     S+    GL+    LKP
Sbjct: 161 VYPKVRARRLGTRGNSRYCYSGLRRCIKLKP 191


>gi|189239377|ref|XP_001812755.1| PREDICTED: similar to rfx5 [Tribolium castaneum]
          Length = 1015

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +   +WI    +    L      + + Y+ Y  Q      K +S       +KQ  
Sbjct: 105 RSEINRTISWIKTHLEEDAALSLPKQEVYEEYTVYCTQN---QIKSLSQADFGKVMKQ-- 159

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK----LKP 773
               ++  ++     S+    GL+    LKP
Sbjct: 160 VYPKVRARRLGTRGNSRYCYSGLRRCIKLKP 190


>gi|49485832|ref|YP_043053.1| hypothetical protein SAS0926 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244275|emb|CAG42702.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 815

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|313150074|ref|ZP_07812267.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138842|gb|EFR56201.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 396

 Score = 48.7 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 69/246 (28%), Gaps = 30/246 (12%)

Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478
           D    +L      DG   +    + +P    ++           E        LV   F 
Sbjct: 41  DYGRDYLATVPKYDGFCTVPEHARYQPVIGKFLNLYEPIDHRPEEGDFTHIQSLVRHIFG 100

Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
            + E+ MDY        L    K    + +     +GKST +N +K  F      N    
Sbjct: 101 EQYELGMDYLQLLY---LHPVQKLPILLLVSEERNTGKSTFLNFLKALF-----QNNVTF 152

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
           +  ++   +            G  ++++ E   N   ++ ++K ++           G  
Sbjct: 153 NTNEDFRSQFNS------DWAGKLLILVDEVLLNRREDSERLKNLSTTLSYKMEAK-GKD 205

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653
             E        +  N        D    R      + + I      D  F QKL      
Sbjct: 206 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 259

Query: 654 EAKKWF 659
               + 
Sbjct: 260 AFLHFL 265


>gi|49483702|ref|YP_040926.1| hypothetical protein SAR1525 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295428026|ref|ZP_06820658.1| hypothetical protein SIAG_00553 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|49241831|emb|CAG40523.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295128384|gb|EFG58018.1| hypothetical protein SIAG_00553 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 815

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
            NK  F+R+      RR+   P        + +++ KL      +         K Y  +
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671

Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
           G    L+ ++ E     + +  + +  Y   ID+  
Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706


>gi|33589242|dbj|BAC81741.1| DNA helicase [Antheraea pernyi nucleopolyhedrovirus]
          Length = 1212

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 486  FTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                   +L       ++ +++ GV  SGKST   L+       +++     D   +   
Sbjct: 884  MLMHFAASLSAPTDYGRKAVYLPGVPLSGKSTFFELL------YFLVLMHKFDDETHTGE 937

Query: 545  EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                ++  + +L       +   NE  + + +  K+         +        +  A++
Sbjct: 938  SRETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSSKCDTKSRKYQGLLKYEANY 993

Query: 605  TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
               IV N  L+V + DD    R++++  D   
Sbjct: 994  KMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1025


>gi|269955633|ref|YP_003325422.1| Bifunctional DNA primase/polymerase [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304314|gb|ACZ29864.1| Bifunctional DNA primase/polymerase [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 305

 Score = 48.3 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 44/203 (21%), Gaps = 31/203 (15%)

Query: 19  KLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ----------- 63
            + P  +G KRP     + +     E++       P    G   G               
Sbjct: 37  PVFPCVVGGKRPLTEHGFLDATTDPERVASWWRTTPRANIGMPTGEMSGLDVVDVDVHDG 96

Query: 64  --PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
                A               D F       +VR      +   +        ++++  S
Sbjct: 97  RTGFPAI-----QAARRAGLVDGF-----AWMVRTP-SGGLHAYY--PHLAGTEQRSWSS 143

Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
              H+D  G G Y V      +     +          +    +  E +           
Sbjct: 144 PTAHVDFRGDGGYVVVPPSAVQRDGG-SVAYALSAVAQDRPRPIDAEALHVFVDPGYGAV 202

Query: 182 VPLVKDKKSIIPSKTWTNNNNRQ 204
                      P +T        
Sbjct: 203 RRAPAVGIPAPPRRTDPTAIANW 225


>gi|15320740|ref|NP_203252.1| helicase [Epiphyas postvittana NPV]
 gi|15213208|gb|AAK85647.1| helicase [Epiphyas postvittana NPV]
          Length = 1219

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 19/157 (12%)

Query: 485  YFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAF----GNQYVINAEASDIM 539
            +       +L+      ++ +++ G   SGKST   L+         +      EA +  
Sbjct: 891  FMLMHFAASLVAPTDYGRKAVYLPGEPMSGKSTFFELLDQLVLMHKFDDETHTGEAKETS 950

Query: 540  QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
                 +      ++  L          +    + NA  IK  T        L Y   Y  
Sbjct: 951  DKEVSKLNSQLYTINELKKC-------SESFFKKNADSIKSNTSSRKYQGLLRYEANY-- 1001

Query: 600  SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
                    IV NK L+V + DD    R++++  D   
Sbjct: 1002 -----KMLIVNNKPLYVDDYDDGVQERFLIVNTDHKF 1033


>gi|307353570|ref|YP_003894621.1| hypothetical protein Mpet_1423 [Methanoplanus petrolearius DSM
           11571]
 gi|307156803|gb|ADN36183.1| hypothetical protein Mpet_1423 [Methanoplanus petrolearius DSM
           11571]
          Length = 256

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 50/183 (27%), Gaps = 20/183 (10%)

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP-KILIPFRMNKEGIKKK--K 117
               +   D D+  E       D F     T  VR G +  +    F+ +    KK    
Sbjct: 2   PAGGVCILDADNATELVQLHALDIFSD---TFFVRTGGEGFRGHFYFKCDFPDHKKIILY 58

Query: 118 TTESTQGHLDILGCGQ--YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
             E+ +   DI   G   Y +       + K YT        +        EE +E LF 
Sbjct: 59  HPETGKELGDIRPSGCKAYCLGPGSIHPSGKPYTIGNDRPVREFTY-----EEIMEKLFS 113

Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235
                   +               N N      E+   ++ F     +   D  I     
Sbjct: 114 -------KVGTSADKKEKQPAGDLNKNENNLVEELGLTVTEFLMPLNHTIRDSQIEGEHP 166

Query: 236 VHH 238
           VH 
Sbjct: 167 VHG 169


>gi|223933203|ref|ZP_03625194.1| Bifunctional DNA primase/polymerase [Streptococcus suis 89/1591]
 gi|223898133|gb|EEF64503.1| Bifunctional DNA primase/polymerase [Streptococcus suis 89/1591]
          Length = 268

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 16/226 (7%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63
           E A      GF +IP+    KR   +  ++++  S  +I +L    P             
Sbjct: 6   EYALHYARLGFSVIPIDKRSKR--AITAYKDKTFSELEIKRLWRDNPDANIAVKT---TD 60

Query: 64  PLYAFDIDSKDEKTANTFKDT-FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
                     D    ++F++   +      +          I  +  K    +       
Sbjct: 61  FFVIDIDVRDDVDGYSSFEEWELKQYIPATLQATTPSGGRHIFLKKPKG--VQISQDIKV 118

Query: 123 QGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRF--KVEDTPLLSEEDVEYLFKFFQE 179
           +  +DI      Y +    +    K Y W            +   + +   +     F  
Sbjct: 119 RPGIDIKAHPNNYVLVAPSNNPRGK-YVWDQSVEEMAEAPIELLDILQAGKKPSKINFTT 177

Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
              P    K + +  +      +    N  + + +        +  
Sbjct: 178 KYNPEYSSKTAKLFEQIVFGLGDEGGRNNNLASLIGGLLIRGVDEE 223


>gi|217979219|ref|YP_002363366.1| virulence-associated E family protein [Methylocella silvestris BL2]
 gi|217504595|gb|ACK52004.1| virulence-associated E family protein [Methylocella silvestris BL2]
          Length = 413

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 67/223 (30%), Gaps = 31/223 (13%)

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
             +    V      G KA   + + G  G+ KST         G  +  ++         
Sbjct: 159 RLFLIAMVARIFQAGCKADYMVVLEGPQGARKST----ACAILGGPWFSDSLPDVTSGKD 214

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
             +          L G  ++ I+E +      +A +K          R  +G      P 
Sbjct: 215 VDQ---------HLRGKWLIEIAEMSAMSRAESAALKAFISRQTERYRPAFGRKEVVEPR 265

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIV-----IPFDKPIANRDASFAQKLETKYTLEAKK 657
                   NK  ++R+      RR+       I  +    +RD  FA+ +   Y   AK 
Sbjct: 266 QCLFIGSTNKAAYLRDETGG--RRFWPVKVGAIDTEALAHDRDQLFAEAVHL-YRAGAKW 322

Query: 658 WFLKGVKAYISKGLDVDIP-EVCLKAKEEERQGTDTYQAWIDD 699
           W          + L    P +      +   +   T  AW+ D
Sbjct: 323 W-----PDAQFE-LRHIKPQQEARFETDAWEE---TIAAWLRD 356


>gi|255012234|ref|ZP_05284360.1| hypothetical protein Bfra3_24042 [Bacteroides fragilis 3_1_12]
          Length = 413

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 69/246 (28%), Gaps = 30/246 (12%)

Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478
           D    +L      DG   +    + +P    ++           E        LV   F 
Sbjct: 58  DYGRDYLATVPKYDGFCTVPEHARYQPVIGKFLNLYEPIDHRPEEGDFTHIQSLVRHIFG 117

Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
            + E+ MDY        L    K    + +     +GKST +N +K  F      N    
Sbjct: 118 EQYELGMDYLQLLY---LHPVQKLPILLLVSEERNTGKSTFLNFLKALF-----QNNVTF 169

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
           +  ++   +            G  ++++ E   N   ++ ++K ++           G  
Sbjct: 170 NTNEDFRSQFNS------DWAGKLLILVDEVLLNRREDSERLKNLSTTLSYKMEAK-GKD 222

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653
             E        +  N        D    R      + + I      D  F QKL      
Sbjct: 223 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 276

Query: 654 EAKKWF 659
               + 
Sbjct: 277 AFLHFL 282


>gi|260816690|ref|XP_002603221.1| hypothetical protein BRAFLDRAFT_226535 [Branchiostoma floridae]
 gi|229288538|gb|EEN59232.1| hypothetical protein BRAFLDRAFT_226535 [Branchiostoma floridae]
          Length = 197

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 5/83 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            WI    ++  +       +   Y  Y +   N   + +S       +  K     +K  
Sbjct: 47  HWIRSHLEVHPDTSLPKQDVFDEYKTYCD---NMKYRNLSPADFGKMM--KMAFPNLKAR 101

Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777
           ++     SK    GL+ K   + 
Sbjct: 102 RLGTRGNSKYCYGGLRKKSELQP 124


>gi|328726383|ref|XP_003248876.1| PREDICTED: hypothetical protein LOC100572784 [Acyrthosiphon pisum]
          Length = 283

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
            K N    ++        SET+ N  IN+  +K +T  + ++ R ++ N   +     T 
Sbjct: 5   NKRNARSAQIENKLASFSSETSSNCIINSQTLKLLTEPNIIS-RKSFSNDTGQ-KNYLTQ 62

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
           FIV N  +   N D A + R  V+ F       D  
Sbjct: 63  FIVTNFKVEFDNDDPAAYHRLAVVEFKSHFTQPDNE 98


>gi|317473777|ref|ZP_07933058.1| hypothetical protein HMPREF1016_00036 [Bacteroides eggerthii
           1_2_48FAA]
 gi|316910034|gb|EFV31707.1| hypothetical protein HMPREF1016_00036 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 358

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 71/236 (30%), Gaps = 25/236 (10%)

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDY 485
           + + DG   +      +P    ++           E        LV   F  + E+ MDY
Sbjct: 67  IPKYDGFCTVPEHIGYRPVIGKFLNLYEPIDHQPQEGDFPSIRSLVEHSFGEQYELGMDY 126

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
                   L    K    + +     +GKST +N +K  F      N    +  ++   +
Sbjct: 127 LQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKALF-----QNNVTFNTNEDFRSQ 178

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN-TYSESPASF 604
                       G  ++++ E   N   ++ ++K ++            +       A F
Sbjct: 179 FNS------DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAKGKDRDEIAFFAKF 232

Query: 605 TPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
                      + +  +  +W R I       + + D +F Q+L          + 
Sbjct: 233 VLCSNNEYLPVIIDAGETRYWVRKI-----NRLQSDDTNFLQRL-KAEIPAFLHFL 282


>gi|295084566|emb|CBK66089.1| Predicted P-loop ATPase and inactivated derivatives [Bacteroides
           xylanisolvens XB1A]
          Length = 707

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 56/198 (28%), Gaps = 21/198 (10%)

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV---SGYFESEEVMDYFTRCVGMAL 494
           +++         ++   S  T   + +   +    V      F  +    +    V  A+
Sbjct: 377 VDSDYAKPFNPFIHYFTSLQTWDGKTDHIGQLTKTVKAADQAFFEDSFRRWLVGMVACAI 436

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
               +  + + + G  G GKST +  +                    R       N    
Sbjct: 437 DDEAQNHQLMLLHGAQGKGKSTFVRHL-----------LPPELKDYYRNGMISPDNKD-- 483

Query: 555 RLMGSRIVIISETNENDEINAAK---IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
            L+     ++   +E D ++ A+   +K +   D M  R  Y           +     N
Sbjct: 484 HLLQMSSCLLINLDEFDTLSPARMQELKSLITQDVMNERKVYDIQNYTFIRRASFIASTN 543

Query: 612 KHLFVRNPDDAWWRRYIV 629
               +   D    RR + 
Sbjct: 544 NPHCLP--DIGENRRILF 559


>gi|332030480|gb|EGI70168.1| 26S protease regulatory subunit 8 [Acromyrmex echinatior]
          Length = 427

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 69  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 120

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 121 DKNIDINDVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 180

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 181 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 230

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 231 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 290

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 291 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 345

Query: 642 SFA 644
              
Sbjct: 346 RLD 348


>gi|307175717|gb|EFN65582.1| 26S protease regulatory subunit 8 [Camponotus floridanus]
          Length = 694

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 98

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 99  DKNIDINDVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 158

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 159 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 208

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 209 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 268

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 269 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 323

Query: 642 SFA 644
              
Sbjct: 324 RLD 326


>gi|289743503|gb|ADD20499.1| 26S proteasome regulatory complex ATPase RPT6 [Glossina morsitans
           morsitans]
          Length = 404

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 46  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 97

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 98  DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 157

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 158 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 207

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 208 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 267

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 268 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 322

Query: 642 SFA 644
              
Sbjct: 323 RLD 325


>gi|170048670|ref|XP_001870728.1| 26S protease regulatory subunit 8 [Culex quinquefasciatus]
 gi|167870706|gb|EDS34089.1| 26S protease regulatory subunit 8 [Culex quinquefasciatus]
          Length = 402

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 44  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 95

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 96  DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 155

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 156 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 205

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 206 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 265

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 266 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 320

Query: 642 SFA 644
              
Sbjct: 321 RLD 323


>gi|157106669|ref|XP_001649429.1| 26S protease regulatory subunit [Aedes aegypti]
 gi|157136893|ref|XP_001663850.1| 26S protease regulatory subunit [Aedes aegypti]
 gi|108868799|gb|EAT33024.1| 26S protease regulatory subunit [Aedes aegypti]
 gi|108869833|gb|EAT34058.1| 26S protease regulatory subunit [Aedes aegypti]
          Length = 403

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 45  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 96

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 97  DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 156

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 157 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 206

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 207 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 266

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 267 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 321

Query: 642 SFA 644
              
Sbjct: 322 RLD 324


>gi|58376339|ref|XP_308557.2| AGAP007243-PA [Anopheles gambiae str. PEST]
 gi|55245639|gb|EAA04200.3| AGAP007243-PA [Anopheles gambiae str. PEST]
          Length = 403

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 45  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 96

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 97  DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 156

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 157 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 206

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 207 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 266

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 267 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 321

Query: 642 SFA 644
              
Sbjct: 322 RLD 324


>gi|209170969|ref|YP_002268116.1| DNA helicase [Agrotis ipsilon multiple nucleopolyhedrovirus]
 gi|208436560|gb|ACI28787.1| DNA helicase [Agrotis ipsilon multiple nucleopolyhedrovirus]
          Length = 1210

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 25/189 (13%)

Query: 495  LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
            +  +  +  +++ G  GSGKS+   +  +        +A+ +   ++             
Sbjct: 905  IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFVVVHKHDSAKYTLTKKDTNEMEAD------ 958

Query: 555  RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
                  I  +   NE    + +  K         T    Y  +  +   +F   IV NK 
Sbjct: 959  ----KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGSQ-KYEGNFKLMIVNNKP 1013

Query: 614  LFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFA-QKLETKYTLEAKKWFL 660
            L + + D     R+ VI  D                 ++ +F  +K       +  + FL
Sbjct: 1014 LHISDYDKGVRNRFAVIYTDHLFEENTSFNGSIYWHIKNKTFPMEKSYIDELAKPVRLFL 1073

Query: 661  KGVKAYISK 669
              +  Y   
Sbjct: 1074 SHILMYKRN 1082


>gi|297663656|ref|XP_002810286.1| PREDICTED: DNA-binding protein RFX5 isoform 1 [Pongo abelii]
 gi|297663658|ref|XP_002810287.1| PREDICTED: DNA-binding protein RFX5 isoform 2 [Pongo abelii]
          Length = 616

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|284005421|ref|NP_001164962.1| DNA-binding protein RFX5 [Oryctolagus cuniculus]
 gi|217030856|gb|ACJ74018.1| regulatory factor X, 5, isoform 1 (predicted) [Oryctolagus
           cuniculus]
          Length = 615

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|196475698|gb|ACG76407.1| regulatory factor X, 5, isoform 1 (predicted) [Otolemur garnettii]
          Length = 610

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|311254332|ref|XP_003125814.1| PREDICTED: DNA-binding protein RFX5-like [Sus scrofa]
          Length = 619

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|189055332|dbj|BAG35216.1| unnamed protein product [Homo sapiens]
          Length = 616

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|183637590|gb|ACC64592.1| regulatory factor X, 5, isoform 2 (predicted) [Rhinolophus
           ferrumequinum]
          Length = 606

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|169410924|gb|ACA57934.1| regulatory factor X, 5, isoform 1 (predicted) [Callicebus moloch]
          Length = 620

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|296228785|ref|XP_002759957.1| PREDICTED: DNA-binding protein RFX5 [Callithrix jacchus]
 gi|166092114|gb|ABY82094.1| regulatory factor X, 5, isoform 1 (predicted) [Callithrix jacchus]
          Length = 618

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|281182430|ref|NP_001162544.1| DNA-binding protein RFX5 [Papio anubis]
 gi|163781020|gb|ABY40796.1| regulatory factor X, 5, isoform 2 (predicted) [Papio anubis]
          Length = 621

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|150439358|emb|CAO72156.1| regulatory factor X, 5 (influences HLA class II expression) [Homo
           sapiens]
          Length = 230

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|149751255|ref|XP_001492313.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X
           5) [Equus caballus]
          Length = 606

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|122889236|emb|CAM13081.1| regulatory factor X, 5 (influences HLA class II expression) [Homo
           sapiens]
          Length = 596

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|114559454|ref|XP_001171715.1| PREDICTED: regulatory factor X, 5 isoform 1 [Pan troglodytes]
 gi|114559456|ref|XP_001171728.1| PREDICTED: regulatory factor X, 5 isoform 2 [Pan troglodytes]
 gi|114559458|ref|XP_001171744.1| PREDICTED: regulatory factor X, 5 isoform 3 [Pan troglodytes]
 gi|114559460|ref|XP_001171762.1| PREDICTED: regulatory factor X, 5 isoform 4 [Pan troglodytes]
 gi|114559462|ref|XP_001171783.1| PREDICTED: regulatory factor X, 5 isoform 5 [Pan troglodytes]
 gi|114559464|ref|XP_001171802.1| PREDICTED: regulatory factor X, 5 isoform 6 [Pan troglodytes]
 gi|332810259|ref|XP_513794.2| PREDICTED: DNA-binding protein RFX5 isoform 7 [Pan troglodytes]
          Length = 616

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|109016195|ref|XP_001106865.1| PREDICTED: DNA-binding protein RFX5 isoform 1 [Macaca mulatta]
 gi|109016204|ref|XP_001107059.1| PREDICTED: DNA-binding protein RFX5 isoform 4 [Macaca mulatta]
          Length = 620

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|62898784|dbj|BAD97246.1| regulatory factor X, 5 variant [Homo sapiens]
          Length = 616

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|329664492|ref|NP_001192655.1| DNA-binding protein RFX5 [Bos taurus]
 gi|297472710|ref|XP_002686088.1| PREDICTED: regulatory factor X, 5 (influences HLA class II
           expression) [Bos taurus]
 gi|296489603|gb|DAA31716.1| regulatory factor X, 5 (influences HLA class II expression) [Bos
           taurus]
          Length = 615

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|57098975|ref|XP_540315.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X
           subunit 5) isoform 1 [Canis familiaris]
 gi|73981414|ref|XP_850613.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X
           subunit 5) isoform 2 [Canis familiaris]
 gi|73981416|ref|XP_861896.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X
           subunit 5) isoform 3 [Canis familiaris]
          Length = 619

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|55726074|emb|CAH89811.1| hypothetical protein [Pongo abelii]
          Length = 597

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|4557843|ref|NP_000440.1| DNA-binding protein RFX5 [Homo sapiens]
 gi|71040090|ref|NP_001020774.1| DNA-binding protein RFX5 [Homo sapiens]
 gi|1350587|sp|P48382|RFX5_HUMAN RecName: Full=DNA-binding protein RFX5; AltName: Full=Regulatory
           factor X 5
 gi|840789|emb|CAA59771.1| binding regulatory factor [Homo sapiens]
 gi|17028337|gb|AAH17471.1| Regulatory factor X, 5 (influences HLA class II expression) [Homo
           sapiens]
 gi|55663923|emb|CAH70327.1| regulatory factor X, 5 (influences HLA class II expression) [Homo
           sapiens]
 gi|119573831|gb|EAW53446.1| regulatory factor X, 5 (influences HLA class II expression),
           isoform CRA_a [Homo sapiens]
 gi|119573832|gb|EAW53447.1| regulatory factor X, 5 (influences HLA class II expression),
           isoform CRA_a [Homo sapiens]
 gi|119573833|gb|EAW53448.1| regulatory factor X, 5 (influences HLA class II expression),
           isoform CRA_a [Homo sapiens]
 gi|123983134|gb|ABM83308.1| regulatory factor X, 5 (influences HLA class II expression)
           [synthetic construct]
 gi|123997837|gb|ABM86520.1| regulatory factor X, 5 (influences HLA class II expression)
           [synthetic construct]
 gi|208967272|dbj|BAG73650.1| regulatory factor X, 5 [synthetic construct]
          Length = 616

 Score = 48.3 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|160882595|ref|ZP_02063598.1| hypothetical protein BACOVA_00548 [Bacteroides ovatus ATCC 8483]
 gi|156112039|gb|EDO13784.1| hypothetical protein BACOVA_00548 [Bacteroides ovatus ATCC 8483]
          Length = 776

 Score = 48.3 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 101/365 (27%), Gaps = 55/365 (15%)

Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF----NTDYRRQNVEENSKAKSTA-QSLE 410
           +   +         +++ E+  K  K  +       + + RR  V+E  + +       E
Sbjct: 350 LELPLHNAYQYTSKTDQAEEKEKEPKICQIIKFMDEHYETRRNVVKEQIEFRKIMPALPE 409

Query: 411 AGSIFSITSDLLDSSSRFLGE-QDGILD--------LETGQKVKPTKELYITKSTGTPFV 461
                       D ++ ++    + I          +++         ++   S      
Sbjct: 410 TELPPFNAVRTKDINTFYINAHINKICCTQADLKAVVDSDYAKPFNPFVHYFTSRKAWNG 469

Query: 462 EGEPSQEFLDLV---SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
           + +   +    V      F  +    +    V  A+    +  + + + G  G GKST +
Sbjct: 470 KTDFIGQMTKTVQAADQAFFEDSFRRWLVGMVACAIDDNVQNHQLMLLHGAQGKGKSTFI 529

Query: 519 NLIKYA-FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
             +      + Y                  + N  L++L    ++ + E +         
Sbjct: 530 RHLLPPELKDYY-----------RNGMIIPENNNHLLQLSSCLLINLDEFDTLSPERMQN 578

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRRYIVIPFDK 634
           +K +   D +  R  Y           +     N       V+       RR +      
Sbjct: 579 LKSLITQDVVNERKVYDIQNYTYIRRASFIASTNNPHCMPDVKEN-----RRILF----S 629

Query: 635 PIANRDASFAQKLETKYTLEAKKWFL--KGVKAYISKGLDVDIPEVC--LKAKEEERQGT 690
            + N D            + A+ + L  +G + +          E    L  + E  +  
Sbjct: 630 TLLNIDYH---TPVNHEGIYAQAYALYRQGFQYWYEN-------EEITFLNNRNEAFRQK 679

Query: 691 DTYQA 695
           D  + 
Sbjct: 680 DPIEE 684


>gi|66395453|ref|YP_239849.1| ORF003 [Staphylococcus phage 2638A]
 gi|62635880|gb|AAX90991.1| ORF003 [Staphylococcus phage 2638A]
          Length = 816

 Score = 48.3 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 76/251 (30%), Gaps = 37/251 (14%)

Query: 462 EGEPSQEFLDLVSGYFESEEV-------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
           E +       L   Y   ++            T  V   +  G K    + + G  G GK
Sbjct: 481 EWDKKPRLEKLFIKYLGVKDTKVNRTITRKALTAGVARVMEPGCKFDYMLTLYGPQGVGK 540

Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
           S ++  +   + +  +++                   +   L G  I+ ++E     +  
Sbjct: 541 SAILKKLGGGWFSDSLVSVTG--------------KEAYEALQGVWIMEMAELAATRKAE 586

Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
              IK          R+ YG+   + P         NK  F+R+      RR+   P   
Sbjct: 587 VEAIKHFISKQIDRFRVAYGHYIEDFPRQCIFIGTTNKVDFLRDETGG--RRFW--PMTV 642

Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG----LDVDIPEVCLKAKEEERQGT 690
                +  ++ KL      +         K Y  +G    LD ++ E     + +  + +
Sbjct: 643 NPDKVEVKWS-KLTKDEINQIWAEA----KHYYEQGEELYLDPELEEEMRSIQSKHTEES 697

Query: 691 DTYQ---AWID 698
                   +++
Sbjct: 698 PYLGIIEEFLN 708


>gi|195393634|ref|XP_002055458.1| GJ19383 [Drosophila virilis]
 gi|194149968|gb|EDW65659.1| GJ19383 [Drosophila virilis]
          Length = 405

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +          L+     + 
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105

Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                D +    +  ++    L      K    + +      P    E        +   
Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160

Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
              +EV++           +G+A        + + + G  G+GK+ L   + +       
Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
           I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD    R
Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270

Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643
               L       E+  +    +  N+   +   D A  R  R    I F  P  N +A  
Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325

Query: 644 A 644
            
Sbjct: 326 D 326


>gi|195134921|ref|XP_002011885.1| GI14329 [Drosophila mojavensis]
 gi|193909139|gb|EDW08006.1| GI14329 [Drosophila mojavensis]
          Length = 405

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +          L+     + 
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105

Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                D +    +  ++    L      K    + +      P    E        +   
Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160

Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
              +EV++           +G+A        + + + G  G+GK+ L   + +       
Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
           I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD    R
Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270

Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643
               L       E+  +    +  N+   +   D A  R  R    I F  P  N +A  
Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325

Query: 644 A 644
            
Sbjct: 326 D 326


>gi|195044618|ref|XP_001991849.1| GH11847 [Drosophila grimshawi]
 gi|193901607|gb|EDW00474.1| GH11847 [Drosophila grimshawi]
          Length = 405

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +          L+     + 
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105

Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                D +    +  ++    L      K    + +      P    E        +   
Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160

Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
              +EV++           +G+A        + + + G  G+GK+ L   + +       
Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
           I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD    R
Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270

Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643
               L       E+  +    +  N+   +   D A  R  R    I F  P  N +A  
Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325

Query: 644 A 644
            
Sbjct: 326 D 326


>gi|194897562|ref|XP_001978679.1| GG19719 [Drosophila erecta]
 gi|195346140|ref|XP_002039625.1| GM23074 [Drosophila sechellia]
 gi|195482260|ref|XP_002101976.1| GE17917 [Drosophila yakuba]
 gi|195567993|ref|XP_002107540.1| GD17527 [Drosophila simulans]
 gi|190650328|gb|EDV47606.1| GG19719 [Drosophila erecta]
 gi|194134851|gb|EDW56367.1| GM23074 [Drosophila sechellia]
 gi|194189500|gb|EDX03084.1| GE17917 [Drosophila yakuba]
 gi|194204950|gb|EDX18526.1| GD17527 [Drosophila simulans]
          Length = 405

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +          L+     + 
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105

Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                D +    +  ++    L      K    + +      P    E        +   
Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160

Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
              +EV++           +G+A        + + + G  G+GK+ L   + +       
Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
           I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD    R
Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270

Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643
               L       E+  +    +  N+   +   D A  R  R    I F  P  N +A  
Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325

Query: 644 A 644
            
Sbjct: 326 D 326


>gi|194769924|ref|XP_001967051.1| GF21725 [Drosophila ananassae]
 gi|190622846|gb|EDV38370.1| GF21725 [Drosophila ananassae]
          Length = 405

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +          L+     + 
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105

Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                D +    +  ++    L      K    + +      P    E        +   
Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160

Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
              +EV++           +G+A        + + + G  G+GK+ L   + +       
Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
           I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD    R
Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270

Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643
               L       E+  +    +  N+   +   D A  R  R    I F  P  N +A  
Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325

Query: 644 A 644
            
Sbjct: 326 D 326


>gi|125983936|ref|XP_001355733.1| GA13327 [Drosophila pseudoobscura pseudoobscura]
 gi|54644049|gb|EAL32792.1| GA13327 [Drosophila pseudoobscura pseudoobscura]
          Length = 405

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +          L+     + 
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105

Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                D +    +  ++    L      K    + +      P    E        +   
Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160

Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
              +EV++           +G+A        + + + G  G+GK+ L   + +       
Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
           I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD    R
Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270

Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643
               L       E+  +    +  N+   +   D A  R  R    I F  P  N +A  
Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325

Query: 644 A 644
            
Sbjct: 326 D 326


>gi|165969093|ref|YP_001650993.1| helicase [Orgyia leucostigma NPV]
 gi|164663589|gb|ABY65809.1| helicase [Orgyia leucostigma NPV]
          Length = 1238

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 11/156 (7%)

Query: 485  YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
                    +L +  +  +  I+  G  GSGKS+   L++  F      +A++  + +   
Sbjct: 924  LLMMHFDASLGIPSDFEKCCIYCTGEPGSGKSSNAELMEQIFVVH-KHDADSYTLSKKET 982

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
             E               I  +   NE  E N +  K         A         +  A+
Sbjct: 983  DEMEA---------NKLISQLYVINEMKECNDSFFKTTADSTKSNAVCRKYQGSQKYEAN 1033

Query: 604  FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
            +   I+ NK L + N D     R+ ++         
Sbjct: 1034 YKLMIINNKPLHISNYDKGVRNRFAIVYMAHEFEEN 1069


>gi|313158753|gb|EFR58140.1| VirE N-terminal domain protein [Alistipes sp. HGB5]
          Length = 310

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 65/250 (26%), Gaps = 45/250 (18%)

Query: 64  PLYAFDIDSKDE---KTANTFKDTFEILHG-------------TPIVRIGQKPKILIPFR 107
            L   DID KD    +  +  KD    L                 IV I Q  K+L+ FR
Sbjct: 79  GLICMDIDRKDNLQVEGYDRLKDQLGRLPYVAFCGRSVGGEGYYAIVPIAQPNKLLLHFR 138

Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
             +                DI    + FV+Y+  P   +E               P ++ 
Sbjct: 139 SLQTKF-SAMGITIDPSCCDI--SRKRFVSYDPEPYINQEAEIYEGLGLADGAAVPDITG 195

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
                        T+P    +   +           Q                     + 
Sbjct: 196 -----------NATLPGTDSEDEPLKEVLKYIQIIEQKKVD-------------ITAGYA 231

Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
            W+ +  A+H+       G+E+  R S     Y     +  +         +    RS F
Sbjct: 232 NWLRIGYALHNAFGDF--GRELFHRVSSFHPRYSYVETDRLFSGLSKGNCANQVTIRSFF 289

Query: 288 TSLFYHHGKL 297
             +  H    
Sbjct: 290 YFVRQHGLDA 299


>gi|150439360|emb|CAO72157.1| regulatory factor X, 5 (influences HLA class II expression) [Homo
           sapiens]
          Length = 184

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|26989757|ref|NP_745182.1| TraC domain-containing protein [Pseudomonas putida KT2440]
 gi|24984651|gb|AAN68646.1|AE016494_6 pyocin R2_PP, traC domain protein [Pseudomonas putida KT2440]
          Length = 736

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 24/192 (12%)

Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-------MDYFTRCVGMALLGGN 498
                +    T    +E +        +   F              +    V   +  G 
Sbjct: 417 HDNAFH-PVCTYLARLEWDRVPRLERWLHEIFGVPRNEYSSKVGKRWMISAVARVMKPGC 475

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
           KA   + + G  G+GKS+ +       G  + ++   +   ++              + G
Sbjct: 476 KADAVLILEGAQGAGKSSAL----GVLGGDWFMDTPFTLGDKDAFQA----------IRG 521

Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
             IV + E +  ++  + K KQ       T R +YG   S+ P         N+  ++++
Sbjct: 522 KWIVELGELDSFNKAESTKAKQFFSASIDTYRESYGRRTSDVPRQCVFAGTTNQDEYLKD 581

Query: 619 PDDAWWRRYIVI 630
                 RRY  +
Sbjct: 582 ATG--NRRYWPV 591


>gi|187921139|ref|YP_001890171.1| Primase 2 [Burkholderia phytofirmans PsJN]
 gi|187719577|gb|ACD20800.1| Primase 2 [Burkholderia phytofirmans PsJN]
          Length = 621

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 10/109 (9%)

Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
             + TA +           +  W+ +  A+ H    +  G EI   WS+    YDE    
Sbjct: 5   QTDETARVRAALALIPAEDYGTWVDMAFALKHGLGDA--GFEIWDEWSRTAGNYDERAAR 62

Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
             W +              T  SLF+   +     L    + D    A+
Sbjct: 63  TTWCSV-------KESGGKTLASLFWLAREHGFD-LRRGHYPDRLATAL 103


>gi|195438627|ref|XP_002067234.1| GK16292 [Drosophila willistoni]
 gi|194163319|gb|EDW78220.1| GK16292 [Drosophila willistoni]
          Length = 405

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +          L+     + 
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105

Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                D +    +  ++    L      K    + +      P    E        +   
Sbjct: 106 -----DVAPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160

Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
              +EV++           +G+A        + + + G  G+GK+ L   + +       
Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
           I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD    R
Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270

Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643
               L       E+  +    +  N+   +   D A  R  R    I F  P  N +A  
Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325

Query: 644 A 644
            
Sbjct: 326 D 326


>gi|77461916|ref|YP_351423.1| AAA ATPase, central region [Pseudomonas fluorescens Pf0-1]
 gi|77385919|gb|ABA77432.1| putative AAA ATPase [Pseudomonas fluorescens Pf0-1]
          Length = 389

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 23/197 (11%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
              +     G  G GK+     I    G   ++    + +             +L     
Sbjct: 130 HPTKSSVFVGAPGVGKTITARWIAAQLGVPLLVLDLTAVMSSLLGKSGANIRSALDYAKR 189

Query: 559 SRIVIISET------NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           +  V+  +         +DE +  ++K++                 E P++       N 
Sbjct: 190 TPCVLFLDEIDAIAKRRSDESDVGELKRLVT--------VILQEVDEWPSTGLLLAATNH 241

Query: 613 HLFVRNPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
              +   D A WRR+ +V+ F  P A       ++       + +KW   G+ +Y  +  
Sbjct: 242 PELI---DPALWRRFDLVVEFKSPDAQTLEVAIRRFLGPDLPKFEKWI--GILSYAFQKH 296

Query: 672 DVDIPEVCLKAKEEERQ 688
                    +  +  R+
Sbjct: 297 SFSD---IEREIQRFRR 310


>gi|301767898|ref|XP_002919383.1| PREDICTED: DNA-binding protein RFX5-like [Ailuropoda melanoleuca]
 gi|281352871|gb|EFB28455.1| hypothetical protein PANDA_007988 [Ailuropoda melanoleuca]
          Length = 618

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYAC----RWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|167462307|ref|ZP_02327396.1| AAA ATPase [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384066|ref|ZP_08057787.1| hypothetical protein PL1_2195 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151239|gb|EFX44535.1| hypothetical protein PL1_2195 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 370

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 78/274 (28%), Gaps = 33/274 (12%)

Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF--TRCVGMA 493
           L    G +  P  +                    L+        + +  +      +   
Sbjct: 58  LTRSMGIEPPPVDKDSFMSLVKISDYSTFDQTVILN--EQI--DKSIRRFLKERELMTKL 113

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           +  G K    I   G  G GK+ L   + +      +    +S I              L
Sbjct: 114 IANGIKPPNSILFYGPPGVGKTLLTKYVAHCLSLPLITLDLSSAISSYLGKTGQNLKKIL 173

Query: 554 IRLMGSRIVIISETNENDEI--------NAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
               G     I   +E D +        +  ++K++         +       E   + +
Sbjct: 174 --DYGKNSPSILLLDEFDAVAKRRDDPSDLGELKRIV-------NVLLKE--LEEWPAHS 222

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIV---IPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
             +    H      D A WRR+ +   IPF      +     +    K  +E +   ++ 
Sbjct: 223 IIVGATNHPEF--LDKAIWRRFDLKIEIPFPN--EEQRFQLWKFYLNKEIVEIEDSLIRA 278

Query: 663 VKAYISKGLDVDIPEVCLKAKEEER-QGTDTYQA 695
           V   I +    DI ++C     +   + +D  ++
Sbjct: 279 VAKVIQQISPSDIKQICDHVLRQVIVEESDPIKS 312


>gi|297625631|ref|YP_003687394.1| hypothetical protein PFREUD_04140 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921396|emb|CBL55949.1| Hypothetical protein PFREUD_04140 [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 840

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 48/202 (23%), Gaps = 18/202 (8%)

Query: 26  GDKRPQRLGKWEEQLLSSEKIDKLPACGFGF-VCGVGEQPLYAFDIDSKDEKTANTFKDT 84
              +      W   L +++   +L   G G  VCG   +     D+D+K   +    +  
Sbjct: 27  RSGKQVPPRGWPT-LTAADNRARLGHYGPGMAVCGAVTERWAFVDVDTKAGASIEAAEAW 85

Query: 85  FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG----HLDILG----CGQYFV 136
              L  +P  R+         +     G          +      +++ G       +  
Sbjct: 86  LRGLGVSPWARVSTPSGGAHFYVSGAPGQANYPGETVAKLTGLVGVEVFGGIAPSAHFAF 145

Query: 137 AYNI----HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV--KDKKS 190
                   +P       W  P       D   L         +       P    K  K 
Sbjct: 146 LPGSERPKYPGRGYTVEWEHP--ELIDADATPLWNALAHAAAERRTGQGSPEEGAKSAKR 203

Query: 191 IIPSKTWTNNNNRQYTNREITA 212
                   ++ +      E   
Sbjct: 204 AGTDTPPPSHPSEGRPRAEAYT 225


>gi|325288511|ref|YP_004264692.1| Primase 2 [Syntrophobotulus glycolicus DSM 8271]
 gi|324963912|gb|ADY54691.1| Primase 2 [Syntrophobotulus glycolicus DSM 8271]
          Length = 748

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 20/168 (11%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKK 283
            +  W+ V MA+      ++        WS++    Y       KWD+F           
Sbjct: 20  DYATWLSVGMALKEAGYTAAD----WDEWSRRDIGRYHAGECFRKWDSFRGAST------ 69

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
             T  ++         +        D   +  +     G        K W +       +
Sbjct: 70  PVTAGTIVALAKDHGWRPE-----RDIGYELGWDSTIGGKDDLVVIQKGWLE----GREV 120

Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
                      ++ +L  + E   ++    E   K+ K      N D 
Sbjct: 121 AEPDSWDHVGQLVKYLEILFEASENVGYVTESWEKDGKYLPTKGNWDR 168


>gi|70726782|ref|YP_253696.1| hypothetical protein SH1781 [Staphylococcus haemolyticus JCSC1435]
 gi|68447506|dbj|BAE05090.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 815

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 67/213 (31%), Gaps = 30/213 (14%)

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
            +  G K    + + G  G GKS ++  +          +     +      EA      
Sbjct: 518 VMEPGCKFDYMLTLYGPQGVGKSAILKKL-----GGAWFSDSLVSVTGKEAYEA------ 566

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
              L G  ++ ++E     +     IK          R+ YG+   + P         NK
Sbjct: 567 ---LQGVWLMEMAELAATRKAEVEAIKHFISKQIDRFRVAYGHYIEDFPRQCIFIGTTNK 623

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG-- 670
             F+R+      RR+   P        +  ++ KL  +   +         K Y  KG  
Sbjct: 624 VDFLRDETGG--RRFW--PMTVNPEKVEVKWS-KLTKEEIDQIWAEA----KHYYDKGEE 674

Query: 671 --LDVDIPEVCLKAKEEERQGTDTYQ---AWID 698
             LD ++ E     + +  + +        +++
Sbjct: 675 LYLDPELEEEMNAIQSKHTEESPYVGIIEEFLN 707


>gi|190344043|gb|ACE75820.1| hypothetical protein [Sorex araneus]
          Length = 611

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 25/140 (17%)

Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
           +  ++ D      L+      A              G     P       EE        
Sbjct: 54  QKFSDNDK-LYLYLQLPAGPSA--------------GDKSSEPSTLSN--EEYMYA---- 92

Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
             WI +  +   +      S+  +Y +Y   E     + +ST      +++      IK 
Sbjct: 93  YKWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKA 148

Query: 754 EKIEKEWKSKRIIKGLKLKP 773
            ++    +SK    G++ K 
Sbjct: 149 RRLGGRGQSKYCYSGIRRKT 168


>gi|260945577|ref|XP_002617086.1| hypothetical protein CLUG_02530 [Clavispora lusitaniae ATCC 42720]
 gi|238848940|gb|EEQ38404.1| hypothetical protein CLUG_02530 [Clavispora lusitaniae ATCC 42720]
          Length = 399

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 103/327 (31%), Gaps = 38/327 (11%)

Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385
           Y  +        +      +    + T   +  L + +  +     + +D     +  R 
Sbjct: 8   YVHEGGIKPYFAQ--QIQDTEIKIQTTTQNLRRLEAQRNKLNTKVRQLKD---ELRLLRA 62

Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD----SSSRFLGEQDGILDLETG 441
           W   +   + +    K      + E   I ++T D +D    + S  +  +    DL   
Sbjct: 63  WSTLEKWSKVM--GLKKVLVKVNPEGKYIVNVTKD-IDIKKLTPSLRVCLKSDSYDLHKI 119

Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALL 495
              K    + +      P    +        +      +EV++           +G+A  
Sbjct: 120 LPNKVDPLVSLMMVEKVPDSTYDMVGGLDKQIKEI---KEVIELPVKHPELFESLGIA-- 174

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
                 + + + G  G+GK+ L   + +   +   I    S+++Q    E  +    L  
Sbjct: 175 ----QPKGVILYGPPGTGKTLLARSVAH-HTDCKFIRVSGSELVQKYIGEGSRMVRELFV 229

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPN 611
           +       I   +E D I +++++  +GGD    R    L       ES       +  N
Sbjct: 230 MAREHAPSIIFMDEVDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFESSKDIKIIMATN 289

Query: 612 KHLFVRNPDDAWWR--RY-IVIPFDKP 635
           +   +   D A  R  R    I F  P
Sbjct: 290 RLDIL---DPALLRPGRIDRKIEFPAP 313


>gi|2911547|emb|CAA75451.1| E1 protein [Human papillomavirus type 75]
          Length = 609

 Score = 48.0 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/323 (12%), Positives = 91/323 (28%), Gaps = 40/323 (12%)

Query: 333 WYKKDKNNVYIWSLTL--DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390
           WYK   ++      T     +  +++    + +   FDLS+  +       +        
Sbjct: 279 WYKGSMDSSVYAHGTYPDWIVNQTMLTHQAAAEAVQFDLSQMIQWAYDTDLTDEADIAYG 338

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
           Y +    +++     A + +A  +                    +     G+    +   
Sbjct: 339 YAKMAESDSNARAWLAHNSQAKFVRE--------------CAQMVRHYRRGEMRDMSISE 384

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
           +I         EG    E +  +   F+    +  F       L G  K    +   G  
Sbjct: 385 WIHYRIEQVEGEG-HWSEIVKFIR--FQEINFI-LFLDAFKQFLHGKPKKSCLLI-YGPP 439

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET--N 568
             GKS     +      + +    A            K+   L  L   +I ++ +    
Sbjct: 440 DCGKSMFAMSLIRVLKGRVISFVNA------------KSQFWLSPLAECKIGLLDDATDP 487

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNT-YSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
               I+ A ++    G+ ++    +        P      I  N ++   +     + R 
Sbjct: 488 CWQYID-AYLRNGIDGNIVSVDCKHKTPLQIRFPP---LLITSNYNIKDNDKYRYLYSRI 543

Query: 628 IVIPFDKPIANRDASFAQKLETK 650
           ++  F      ++    + L T 
Sbjct: 544 VIFEFKHKFPFKEDGSPEFLLTD 566


>gi|237724850|ref|ZP_04555331.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436588|gb|EEO46665.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 410

 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 26/194 (13%)

Query: 468 EFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
               LV   F  + E+ MDY        L    K    + +     +GKST +N +K  F
Sbjct: 102 HIRSLVEHIFGEQYELGMDYLQLLY---LKPTQKLPILLLVSEERNTGKSTFLNFLKALF 158

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
                 N       Q                 G  ++++ E   N   ++ ++K ++   
Sbjct: 159 QENVTFNTNEDFRSQFN-----------ADWAGKLMIVVDEVLLNRREDSERLKNLSTAH 207

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
                    + Y E        +  N     +++   +  +W R +       +   D S
Sbjct: 208 SYKMEAKGKDRY-EVQFFAKFVLCSNNENFPVYIEPEETRYWVRKV-----SRLERDDTS 261

Query: 643 FAQKLETKYTLEAK 656
           F QKL         
Sbjct: 262 FLQKL-KDEIPAFL 274


>gi|269978256|ref|ZP_06185206.1| putative primase [Mobiluncus mulieris 28-1]
 gi|269933765|gb|EEZ90349.1| putative primase [Mobiluncus mulieris 28-1]
          Length = 146

 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 14/128 (10%)

Query: 22  PLRLGDKRPQRLGKWEEQLLSSEKIDKLPA-------CGFGFVCGVGEQPLYAFDIDSK- 73
            +R   K P ++        S        A        G G + G     L   D+D   
Sbjct: 13  WVRRRGKVPLQVSGVNASSTSPGTWSSFDAVSASRVGDGLGIMLG---NGLGCLDLDHCI 69

Query: 74  --DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
                 A               + +      L  FR+  E    ++  +   G +++   
Sbjct: 70  DAGGVVAPWALAAIAKTENIVFIEVSLSGDGLHVFRLCPEASG-RRFPQVGGGAIEVYSR 128

Query: 132 GQYFVAYN 139
            ++     
Sbjct: 129 SRFIACTG 136


>gi|260424986|ref|ZP_05733891.2| putative virulence-associated protein E [Dialister invisus DSM
           15470]
 gi|260403825|gb|EEW97372.1| putative virulence-associated protein E [Dialister invisus DSM
           15470]
          Length = 794

 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 69/228 (30%), Gaps = 39/228 (17%)

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
              FT  V   +  G K        G  G GK+T +  I   +      +          
Sbjct: 497 RKSFTAAVARVMTPGCKYDYVPVFIGPQGIGKTTFLRTIGKGW-----HSDSLQSFHGKE 551

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
             E          + G  I  I E     +    +IKQ         R  YG      P 
Sbjct: 552 AAEL---------IQGIWINEIGEMTGYSKSGDNEIKQFLSRCDDVYRQPYGRHTGRYPR 602

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVI-----PFDKPIANRDASFAQKLETKYTLEAKK 657
               F   N H F+++P  +  RR+  I     P  K I         +L          
Sbjct: 603 KGVFFGTCNDHDFLKDPTGS--RRFWPIDVGVEPVTKSIWQDLPDEVDQL---------- 650

Query: 658 WFLKGVKAYISKG-LDVDIPEVCLKAKEEE-RQGTDT-----YQAWID 698
           W  + V  +     +  + P +   AK+E+ R   D+      Q ++D
Sbjct: 651 WA-EAVMRWKQHEPIYFEDPAIEAMAKQEQDRHREDSAKDGLIQDFLD 697


>gi|327189598|gb|EGE56750.1| virulence-associated E family protein [Rhizobium etli CNPAF512]
          Length = 401

 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 15/149 (10%)

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
             +    V      G KA     + G  GS KST         G ++  +A         
Sbjct: 145 RMFIISMVARIYQPGCKADHLPVLEGRQGSLKST----ACRVLGGEWFSDAMPEINSGKD 200

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
             +          L G  ++ ++E +  +   A  +K     D    R +YG      P 
Sbjct: 201 ASQ---------HLRGKWLIEVAEMHAMNRAEATMLKSFISRDTERYRPSYGRAEVIEPR 251

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
                   N+  ++R+P     RR+  + 
Sbjct: 252 QCVFVGTTNQDTYLRDPTGG--RRFWPVK 278


>gi|296110912|ref|YP_003621293.1| prophage Lp4 protein 7, DNA replication [Leuconostoc kimchii IMSNU
           11154]
 gi|295832443|gb|ADG40324.1| prophage Lp4 protein 7, DNA replication [Leuconostoc kimchii IMSNU
           11154]
          Length = 289

 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 51/192 (26%), Gaps = 16/192 (8%)

Query: 11  KQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKI-----DKLPACGFGFVCGVGEQP 64
            + I  GF +  L  G   P +      +   +  ++             G +    +  
Sbjct: 34  HELIQQGFAVYLLSQGTNTPYKGSRGHLDATNNVRELTDMFLKYGANSNIGIIL--KDTG 91

Query: 65  LYAFDID-SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
           L   DID    + +         +        +   P+ L  F    +G+   K   +  
Sbjct: 92  LVVLDIDRHSVQTSGLNTLRQAGVSVSFDNEAVEVTPRGLHVFFKIPDGLDISKLKRNIG 151

Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
             L+++             K  + Y            +  ++ +  ++         +  
Sbjct: 152 TGLELITDK--ITVAPSV-KNGEPYK----HLGRSFSEANVMPDWLIDLSSNVATSGSTQ 204

Query: 184 LVKDKKSIIPSK 195
             +  K  +  +
Sbjct: 205 TGRVPKYSVKER 216


>gi|66520165|ref|XP_623053.1| PREDICTED: 26S protease regulatory subunit 8 isoform 1 [Apis
           mellifera]
          Length = 405

 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 98

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 99  DKNIDINDVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 158

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 159 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 208

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 209 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 268

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 269 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 323

Query: 642 SFA 644
              
Sbjct: 324 RLD 326


>gi|113195484|ref|YP_717621.1| helicase/P143 [Clanis bilineata nucleopolyhedrosis virus]
 gi|94959025|gb|ABF47425.1| helicase/P143 [Clanis bilineata nucleopolyhedrosis virus]
          Length = 1241

 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 11/156 (7%)

Query: 485  YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
                    +L +  +  +  +++ G  GSGKS+   L++       V   +A +   +R 
Sbjct: 927  LLMMHFDASLGIPSDYEKCCVYLNGEPGSGKSSNFELMEQIV---VVHKHDAENYTLSRK 983

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
                             I  +   NE  E N +  K         A         +   +
Sbjct: 984  ETDEME-------ANKLISQLYVINEMKECNDSFFKSTADSTKSNAVCRKYQGSQKYEGN 1036

Query: 604  FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
            +   IV NK L++ N D     R+ ++  D      
Sbjct: 1037 YKLMIVNNKPLYISNYDKGVRNRFAIVYTDHVFEEN 1072


>gi|320333454|ref|YP_004170165.1| Bifunctional DNA primase/polymerase [Deinococcus maricopensis DSM
           21211]
 gi|319754743|gb|ADV66500.1| Bifunctional DNA primase/polymerase [Deinococcus maricopensis DSM
           21211]
          Length = 630

 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 51/244 (20%), Gaps = 44/244 (18%)

Query: 17  GFKLIPLRLGDKRPQRLGKWEEQLL----SSEKIDKLP-----ACGFGFVCGVGEQPLYA 67
           G  L+ +  G KRP     W +  L    + E   +           G + G        
Sbjct: 16  GLVLVRINHGQKRP-TYSGWGKDSLGVIRTPEDAHRELTLDGREWNVGVLLGPSGLLSLD 74

Query: 68  FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN---------------KEG 112
            D D    +         + +         Q     + +R+                 + 
Sbjct: 75  IDRDDLAREEFAKHGLDLDAMIAVHP-HPTQAKGKKLWYRLPDDLDLPGVRAFQLPNPDN 133

Query: 113 IKKKKTTESTQGHLDILGCGQ------YFVAYNIHPKTK-----------KEYTWTTPPH 155
           +             ++    +         A                   + Y W+    
Sbjct: 134 VDPITGQPRPMTIFELRASPRDGSKSVQDAAPGSLHPEPEYRHGDAHPHPRYYIWSADGA 193

Query: 156 RFKVEDTPLLSEEDVEYL-FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL 214
               ED P   +  ++            P    ++  + +    +      + R      
Sbjct: 194 PTTREDIPEAPQALLDLYQVLRPSPDLAPRPTARRRSVIALPTRSGARANSSARYAAWAR 253

Query: 215 SCFG 218
               
Sbjct: 254 QHVN 257


>gi|242004405|ref|XP_002423081.1| rfx5, putative [Pediculus humanus corporis]
 gi|212506012|gb|EEB10343.1| rfx5, putative [Pediculus humanus corporis]
          Length = 962

 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           WI    +    +      +   Y +Y E   N   K +ST      +KQ     G++  +
Sbjct: 19  WIKTHLEEDSEISIPKQDVYDQYLKYCE---NVTMKPLSTADFGKVMKQ--VYPGVRPRR 73

Query: 756 IEKEWKSKRIIKGLK 770
           +     S+    G++
Sbjct: 74  LGTRGNSRYCYSGMR 88


>gi|307212064|gb|EFN87947.1| 26S protease regulatory subunit 8 [Harpegnathos saltator]
          Length = 405

 Score = 48.0 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +          L+     + 
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105

Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                D +    +  ++    L      K    + +      P    E        +   
Sbjct: 106 -----DVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160

Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
              +EV++           +G+A        + + + G  G+GK+ L   + +       
Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
           I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD    R
Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270

Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643
               L       E+  +    +  N+   +   D A  R  R    I F  P  N +A  
Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325

Query: 644 A 644
            
Sbjct: 326 D 326


>gi|323180722|gb|EFZ66267.1| ATPase family associated with various cellular activities family
           protein [Escherichia coli 1180]
 gi|332342321|gb|AEE55655.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 373

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 85/259 (32%), Gaps = 39/259 (15%)

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           +  D +       + +D   + +G+      +  R     G  G GK+   + +    G 
Sbjct: 104 QIEDSLDQIILERKHIDRL-KTLGL------QPTRSAIFVGPPGVGKTLTASWLAQKLGV 156

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETN-----ENDEINAAKIKQM 581
            + +    + +             +L     G  ++++ E +      +D+ +  ++K++
Sbjct: 157 PFYVLDLTAVMSSYLGKSGNNLRAALDFAKKGPCVLLLDEIDSIAKKRSDDSDVGELKRL 216

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-IVIPFDKPIANRD 640
                            E P+S       N    +   D A WRR+ +V+ F+KP +   
Sbjct: 217 VT--------VILQEVDEWPSSSLLLAATNFAELI---DPALWRRFDLVLNFEKPDSESI 265

Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ------GTD--T 692
               ++          +W       + ++           ++  + R+       +D   
Sbjct: 266 KEAIKRFSGPDYAIFARWIDLLAIMFKNESFSN-----IERSINKFRRSVALGISSDEEL 320

Query: 693 YQAWIDDCC-DIGENLWEE 710
             ++I D   ++  N  +E
Sbjct: 321 IGSFIKDGLSELDRNERKE 339


>gi|306818630|ref|ZP_07452353.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304648803|gb|EFM46105.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 184

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 23/144 (15%)

Query: 15  HNGFKLIP---------LRLGDKRPQRLGKWEEQLLSSEKIDKLPA-------CGFGFVC 58
            NG    P         +R   K P ++        S        A        G G + 
Sbjct: 36  RNGLVGFPAEMRFRNQWVRRRGKVPLQVSGVNASSTSPGTWSSFDAVSASRVGDGLGIML 95

Query: 59  GVGEQPLYAFDIDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
           G     L   D+D         A               + +      L  FR+  E    
Sbjct: 96  G---NGLGCLDLDHCIDAGGVVAPWALAAIAKTENIVFIEVSLSGDGLHVFRLCPEASG- 151

Query: 116 KKTTESTQGHLDILGCGQYFVAYN 139
           ++  +   G +++    ++     
Sbjct: 152 RRFPQVGGGVIEVYSRARFIACTG 175


>gi|228861672|ref|YP_002854692.1| helicase [Euproctis pseudoconspersa nucleopolyhedrovirus]
 gi|226425120|gb|ACO53532.1| helicase [Euproctis pseudoconspersa nucleopolyhedrovirus]
          Length = 1246

 Score = 47.6 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 17/173 (9%)

Query: 469  FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
            F +  +  + +  ++ +F   +G   +  +  +  I+  G  GSGKS+   ++ +     
Sbjct: 918  FRNFTNFNYINSLLIMHFDASLG---IPSDFEKCCIYCTGEPGSGKSSNGEMMGHLVVVH 974

Query: 529  YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM--TGGDC 586
                   +     +  +  +AN  + +L           NE +E N A  K    +    
Sbjct: 975  KRDADSYTL--SKKETDEMEANKLISQLY--------VINELEECNDAFFKTTADSSKSN 1024

Query: 587  MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
            +  R   G+   E+  +F   I+ NK L+++N D     R+ V+         
Sbjct: 1025 VVCRKFQGSQTYEA--NFKLMIINNKPLYIKNYDKGVRNRFAVLYMPHEFEEN 1075


>gi|22549494|ref|NP_689267.1| putative helicase [Mamestra configurata NPV-B]
 gi|22476673|gb|AAM95079.1| putative helicase [Mamestra configurata NPV-B]
          Length = 1209

 Score = 47.6 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 25/189 (13%)

Query: 495  LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
            +  +  +  +++ G  GSGKS+   +  +        +A+ +   ++             
Sbjct: 904  IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFVVVHKHDSAKYTLTKKDTNEMEAD------ 957

Query: 555  RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
                  I  +   NE    + +  K         T    Y  +  +   +F   IV NK 
Sbjct: 958  ----KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGSQ-KYEGNFKLMIVNNKP 1012

Query: 614  LFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFA-QKLETKYTLEAKKWFL 660
            L + + D     R+ VI  D                 ++ +F  +K       +  + FL
Sbjct: 1013 LHISDYDKGVRNRFAVIYTDHLFEENMPFNGSIYWHIKNKTFPMEKSYIDELAKPVRLFL 1072

Query: 661  KGVKAYISK 669
              +  Y   
Sbjct: 1073 SHILMYKRN 1081


>gi|215401317|ref|YP_002332621.1| helicase [Helicoverpa armigera multiple nucleopolyhedrovirus]
 gi|198448817|gb|ACH88607.1| helicase [Helicoverpa armigera multiple nucleopolyhedrovirus]
          Length = 1209

 Score = 47.6 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 25/189 (13%)

Query: 495  LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
            +  +  +  +++ G  GSGKS+   +  +        +A+ +   ++             
Sbjct: 904  IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFVVVHKHDSAKYTLTKKDTNEMEAD------ 957

Query: 555  RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
                  I  +   NE    + +  K         T    Y  +  +   +F   IV NK 
Sbjct: 958  ----KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGSQ-KYEGNFKLMIVNNKP 1012

Query: 614  LFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFA-QKLETKYTLEAKKWFL 660
            L + + D     R+ VI  D                 ++ +F  +K       +  + FL
Sbjct: 1013 LHISDYDKGVRNRFAVIYTDHLFEENMPFNGSIYWHIKNKTFPMEKSYIDELAKPVRLFL 1072

Query: 661  KGVKAYISK 669
              +  Y   
Sbjct: 1073 SHILMYKRN 1081


>gi|226467155|emb|CAX76058.1| Tat-binding protein 10 [Schistosoma japonicum]
          Length = 398

 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 105/342 (30%), Gaps = 50/342 (14%)

Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS----KSPRFWFNTDY 391
           K   + +I++  +  +          +   V  L EE +   +      +  +       
Sbjct: 19  KIDEHQFIYTEKVLNLRRLEAQ-RNELNAKVRMLREELQLLQEQGSFVGEVIKAMDKKKV 77

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
             +   E        +++E   I       L S S  L             K+ P+K   
Sbjct: 78  LVKVQPEGKYVVDIDKNIEMSQISPNCRVALRSDSYIL------------HKILPSKVDP 125

Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIH 505
           +        V     +    L     E +EV++           +G+A        + + 
Sbjct: 126 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVL 179

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G  G+GK+ L   + +       I    S+++Q    E  +    L  +       I 
Sbjct: 180 LYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 238

Query: 566 ETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
             +E D I + +++  TGGD    R    L       E   +    +  N+   +   D 
Sbjct: 239 FMDEVDSIGSTRLESGTGGDSEVQRTMLELLNQLDGFEPKQNIKVIMATNRIDIL---DS 295

Query: 622 AWWR--RY-IVIPFDKP----------IANRDASFAQKLETK 650
           A  R  R    I F  P          I +R  +  + ++ +
Sbjct: 296 ALLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLR 337


>gi|332703645|ref|ZP_08423733.1| prophage antirepressor [Desulfovibrio africanus str. Walvis Bay]
 gi|332553794|gb|EGJ50838.1| prophage antirepressor [Desulfovibrio africanus str. Walvis Bay]
          Length = 248

 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           +++ CC +G +  E  ++L  +Y      E       +S      +L++    GG++  +
Sbjct: 166 FLERCCHLGPHFSESKNALYDAYCLLCSTETET---PLSRELFFRDLRRAC--GGLRDVR 220

Query: 756 IEKEWKSKRIIKGLKLK 772
                +  + ++G+ L+
Sbjct: 221 PRVGRERPKRLRGVGLR 237


>gi|227431840|ref|ZP_03913864.1| possible bifunctional DNA primase/polymerase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352382|gb|EEJ42584.1| possible bifunctional DNA primase/polymerase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 295

 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 68/255 (26%), Gaps = 19/255 (7%)

Query: 12  QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP--------ACGFGFVCGVGEQ 63
           + +  G  +  ++     P +       L S   I +L             G      + 
Sbjct: 35  ELVEQGLSVYLMQPKTSIPYKGS--RGHLSSVNDIKELKRLIEAHGDDSNVGISL--VDT 90

Query: 64  PLYAFDIDSKDEK---TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
            L   DID         A+  K          ++    +    I + + K G   +K   
Sbjct: 91  GLVVLDIDRHTPNKNGLASLKKAGITPNFDDEVIEKTPRNGFHIFYYIPK-GFDMEKINH 149

Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
           +    ++I+   +  VA +         ++      F   +   + +  +E +       
Sbjct: 150 NPLNGVEIITD-KITVAPSFKTIDGNPVSYEHFGKDFIHANL--MPDWLIELVSNVATGG 206

Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
                +  K  +  +     N      R   A          N   +    +V  ++  +
Sbjct: 207 NTQSGRVPKYSVKERWEMVLNGFSEGERNNQAVSVSGYLLRINVDPNIAYEIVKLINSRS 266

Query: 241 RGSSKGKEIARRWSK 255
                 +E+   +  
Sbjct: 267 VVPLPDRELFTTFKS 281


>gi|116326160|ref|YP_803486.1| helicase [Anticarsia gemmatalis nucleopolyhedrovirus]
 gi|112180898|gb|ABI13875.1| helicase [Anticarsia gemmatalis nucleopolyhedrovirus]
          Length = 1221

 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 14/153 (9%)

Query: 486  FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
                 G  ++  N  ++ +++ G   SGKST   L++        +     D   +    
Sbjct: 894  LMHFAGGLVVPTNYGRKAVYLPGEPMSGKSTFFELLESL------VLMHKFDDETHTGDS 947

Query: 546  AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESPAS 603
               ++  + +L       +   NE  + + +  K+    D + +           +  A+
Sbjct: 948  KETSDKEVSKLN----SQLYTINELKKCSESFFKK--NADSINSDSKSRKYQGLLKYEAN 1001

Query: 604  FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
            +   IV N  L+V + DDA   R++++  D   
Sbjct: 1002 YKMLIVNNNPLYVDDYDDAVQDRFLIVYTDHKF 1034


>gi|45120533|gb|AAS55052.1| helicase [Anticarsia gemmatalis MNPV]
          Length = 1221

 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 14/153 (9%)

Query: 486  FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
                 G  ++  N  ++ +++ G   SGKST   L++        +     D   +    
Sbjct: 894  LMHFAGGLVVPTNYGRKAVYLPGEPMSGKSTFFELLESL------VLMHKFDDETHTGDS 947

Query: 546  AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESPAS 603
               ++  + +L       +   NE  + + +  K+    D + +           +  A+
Sbjct: 948  KETSDKEVSKLN----SQLYTINELKKCSESFFKK--NADSINSDSKSRKYQGLLKYEAN 1001

Query: 604  FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
            +   IV N  L+V + DDA   R++++  D   
Sbjct: 1002 YKMLIVNNNPLYVDDYDDAVQDRFLIVYTDHKF 1034


>gi|315503064|ref|YP_004081951.1| bifunctional DNA primase/polymerase [Micromonospora sp. L5]
 gi|315409683|gb|ADU07800.1| Bifunctional DNA primase/polymerase [Micromonospora sp. L5]
          Length = 691

 Score = 47.6 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 28/228 (12%)

Query: 6   WKEQAKQAIHNGFKLIPLRLGD---KRPQRLGKWEEQLLSSEKIDK----LPACGFGFVC 58
           + + A+  + N   +IP  +     K P+ L        +  ++ +     P  G G   
Sbjct: 9   YGKAARIYLGNWPSVIPTDINGEIGKVPRGLTGSSRINPTPNQVRELVRDYPDAGTGLPL 68

Query: 59  GVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP--IVRIGQKPK--ILIPFRMNKEGIK 114
                 +     D  D++ A T       L   P   +   +      +  FR+      
Sbjct: 69  --PSDVVGVDVDDYGDKRGAETLGKLEAELGPLPVGPMSTARGYGKSGIRFFRVPAGFST 126

Query: 115 KK-----KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH-----RFKVEDTPL 164
           +      K  +  +            V  +I+PKT  +Y W            +  D P 
Sbjct: 127 ENLPNVGKDVDLIRHGW--RWAR---VWPSINPKTGTQYRWFGASGQTLSSPPRPTDFPE 181

Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
           L E  + +L       T    +  +    +            + +   
Sbjct: 182 LPEAWLAWLESRRAANTADATELGEPEAFNVDAYTWLVELLADDQAAT 229


>gi|332027618|gb|EGI67688.1| DNA-binding protein RFX7 [Acromyrmex echinatior]
          Length = 1223

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            WI    +   ++      +   Y+ Y  +      K +ST      +KQ      ++  
Sbjct: 180 MWIKTHLEEDPDVSLPKQEVYDEYNMYCIRNSM---KPLSTADFGKVMKQ--VYPRVRPR 234

Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777
           ++     S+    G++ +   + 
Sbjct: 235 RLGTRGNSRYCYAGMRKRIKLDP 257


>gi|123238018|ref|XP_001287285.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121854433|gb|EAX74355.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 181

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 15/177 (8%)

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             +N+  +K +           Y +       +    +  N         D   RRY+V+
Sbjct: 3   KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 59

Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689
                   +D  +   L    T +                 +   IP    + ++   + 
Sbjct: 60  R-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEA 116

Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
             +    +ID+     + +  +  SL  SY +Y ++   Y     S RT   N+K  
Sbjct: 117 NKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTFLANVKSL 166


>gi|167620889|ref|ZP_02389520.1| DNA primase [Burkholderia thailandensis Bt4]
          Length = 205

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
              S           D W    MA+  E     +G  +   W +   +Y+ ++    W +
Sbjct: 5   ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFALWNEWGQGAQSYNAKDARDVWKS 62

Query: 272 FDFEEI 277
           F   +I
Sbjct: 63  FKGGKI 68


>gi|225719952|gb|ACO15809.1| regulatory factor X, 5, isoform 2 (predicted) [Dasypus
           novemcinctus]
          Length = 612

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKGSEPSTLSN--EEYMYA----YRWIRNHLEKHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +S+    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSQYCYSGIRRKT 168


>gi|322800911|gb|EFZ21743.1| hypothetical protein SINV_03788 [Solenopsis invicta]
          Length = 1243

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            WI    +   ++      +   Y+ Y  +      K +ST      +KQ      ++  
Sbjct: 190 MWIKTHLEEDPDVSLPKQEVYDEYNMYCTRNSM---KPLSTADFGKVMKQ--VYPRVRPR 244

Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777
           ++     S+    G++ +   + 
Sbjct: 245 RLGTRGNSRYCYAGMRKRIKLDP 267


>gi|123173333|ref|XP_001279784.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121830245|gb|EAX66854.1| hypothetical protein TVAG_258820 [Trichomonas vaginalis G3]
          Length = 213

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 12/132 (9%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 87  WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199

Query: 584 GDCMTARLNYGN 595
                    Y +
Sbjct: 200 DKVGVVERKYKD 211


>gi|307197642|gb|EFN78821.1| Regulatory factor X domain-containing protein 2 [Harpegnathos
           saltator]
          Length = 1296

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            WI    +   ++      +   Y+ Y  +      K +ST      +KQ      ++  
Sbjct: 195 MWIKTHLEEDPDVSLPKQEVYDEYNVYCIRNSM---KPLSTADFGKVMKQ--VYPRVRPR 249

Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777
           ++     S+    G++ +   + 
Sbjct: 250 RLGTRGNSRYCYAGMRKRIKLDP 272


>gi|123238307|ref|XP_001287346.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121854607|gb|EAX74416.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 173

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 15/170 (8%)

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           +K +           Y +       +    +  N         D   RRY+V+       
Sbjct: 3   LKSLITDKVGVVERKYKDQRVCENVANFIMVSNNSVPMKLESSD---RRYVVVR-TSEAH 58

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695
            +D  +   L    T +                 +   IP    + ++   +   +    
Sbjct: 59  MQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--HTEERQTLLEANKSVYEL 116

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
           +ID+     + +  +  SL  SY +Y ++   Y     S RT   N+K  
Sbjct: 117 FIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 159


>gi|67967906|dbj|BAE00435.1| unnamed protein product [Macaca fascicularis]
          Length = 620

 Score = 47.2 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLGN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|157137247|ref|XP_001663955.1| rfx5 [Aedes aegypti]
 gi|108869758|gb|EAT33983.1| rfx5 [Aedes aegypti]
          Length = 415

 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +   N+      +   Y+ + E     D K +ST      +KQ  
Sbjct: 230 RSEINHTINWVRSHLEHDPNVSIPKQEVYDDYTAFCE---RIDIKPLSTADFGKVMKQ-- 284

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              GI+  ++     S+     ++
Sbjct: 285 VFPGIRPRRLGTRGHSRYCYAAMR 308


>gi|37651330|ref|NP_932697.1| helicase [Choristoneura fumiferana DEF MNPV]
 gi|37499239|gb|AAQ91638.1| helicase [Choristoneura fumiferana DEF MNPV]
          Length = 1221

 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 15/155 (9%)

Query: 485  YFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +        L+   N  ++ +++ G   SGKST   L++        +     D   +  
Sbjct: 892  FMLMHFAGGLVAPTNYGRKAVYLPGEPMSGKSTFFELLESL------VLMHKFDDETHTG 945

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESP 601
                 ++  + +L       +   NE  + + +  K+    D + +           +  
Sbjct: 946  DSKETSDKEVSKLN----SQLYTINELKKCSESFFKK--NADSINSDSKSRKYQGLLKYE 999

Query: 602  ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
            A++   IV N  L+V + DDA   R++++  D   
Sbjct: 1000 ANYKMLIVNNNPLYVDDYDDAVQDRFLIVYTDHKF 1034


>gi|20069972|ref|NP_613176.1| helicase [Mamestra configurata NPV-A]
 gi|20043366|gb|AAM09201.1| helicase [Mamestra configurata NPV-A]
 gi|33331804|gb|AAQ11112.1| putative helicase [Mamestra configurata NPV-A]
          Length = 1212

 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 25/189 (13%)

Query: 495  LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
            +  +  +  +++ G  GSGKS+   +  +        +A+ +   ++             
Sbjct: 907  IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFVVVHKHDSAKYTLTKKDTNEMEAD------ 960

Query: 555  RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
                  I  +   NE    + +  K         T    Y  +  +   +F   IV NK 
Sbjct: 961  ----KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGSQ-KYEGNFKLLIVNNKP 1015

Query: 614  LFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFA-QKLETKYTLEAKKWFL 660
            L + + D     R+ VI  D                 ++ +F  +K       +  + FL
Sbjct: 1016 LHISDYDKGVRNRFAVIYTDHLFEENMPFNGSIYWHIKNKTFPMEKSYIDELAKPVRLFL 1075

Query: 661  KGVKAYISK 669
              +  Y   
Sbjct: 1076 SHILMYKRN 1084


>gi|226467157|emb|CAX76059.1| Tat-binding protein 10 [Schistosoma japonicum]
 gi|226467161|emb|CAX76061.1| Tat-binding protein 10 [Schistosoma japonicum]
 gi|226467163|emb|CAX76062.1| Tat-binding protein 10 [Schistosoma japonicum]
          Length = 430

 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 105/342 (30%), Gaps = 50/342 (14%)

Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS----KSPRFWFNTDY 391
           K   + +I++  +  +          +   V  L EE +   +      +  +       
Sbjct: 51  KIDEHQFIYTEKVLNLRRLEAQ-RNELNAKVRMLREELQLLQEQGSFVGEVIKAMDKKKV 109

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
             +   E        +++E   I       L S S  L             K+ P+K   
Sbjct: 110 LVKVQPEGKYVVDIDKNIEMSQISPNCRVALRSDSYIL------------HKILPSKVDP 157

Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIH 505
           +        V     +    L     E +EV++           +G+A        + + 
Sbjct: 158 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVL 211

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G  G+GK+ L   + +       I    S+++Q    E  +    L  +       I 
Sbjct: 212 LYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 270

Query: 566 ETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
             +E D I + +++  TGGD    R    L       E   +    +  N+   +   D 
Sbjct: 271 FMDEVDSIGSTRLESGTGGDSEVQRTMLELLNQLDGFEPKQNIKVIMATNRIDIL---DS 327

Query: 622 AWWR--RY-IVIPFDKP----------IANRDASFAQKLETK 650
           A  R  R    I F  P          I +R  +  + ++ +
Sbjct: 328 ALLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLR 369


>gi|123210772|ref|XP_001285251.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121848380|gb|EAX72321.1| hypothetical protein TVAG_553690 [Trichomonas vaginalis G3]
          Length = 213

 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 12/132 (9%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 87  WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199

Query: 584 GDCMTARLNYGN 595
                    Y +
Sbjct: 200 DKVGVVERKYKD 211


>gi|157786109|gb|ABV74214.1| helicase [Samia cynthia nucleopolyhedrovirus]
          Length = 1212

 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 486  FTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                   +L       ++ +++ GV  SGKST   L+ +       +     D   +   
Sbjct: 884  MLMHFAASLSAPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDETHTGE 937

Query: 545  EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                ++  + +L       +   NE  + + +  K+    +    +        +  A++
Sbjct: 938  SRETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSNKCDTKSRKYQGLLKYEANY 993

Query: 605  TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
               IV N  L+V + DD    R++++  D   
Sbjct: 994  KMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1025


>gi|332220264|ref|XP_003259277.1| PREDICTED: DNA-binding protein RFX5 isoform 1 [Nomascus leucogenys]
          Length = 616

 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
           EE          WI +  +   +      S+  +Y +Y   E     + +ST      ++
Sbjct: 87  EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIR 140

Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
           +      IK  ++    +SK    G++ K 
Sbjct: 141 E--IFPDIKARRLGGRGQSKYCYSGIRRKT 168


>gi|227872575|ref|ZP_03990911.1| virulence-associated protein E [Oribacterium sinus F0268]
 gi|227841576|gb|EEJ51870.1| virulence-associated protein E [Oribacterium sinus F0268]
          Length = 819

 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 105/750 (14%), Positives = 206/750 (27%), Gaps = 106/750 (14%)

Query: 5   QWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCG----- 59
           QWKE  K+   N F  + +   +        + E +  S+          GFV G     
Sbjct: 20  QWKE--KEYSWNAFTALFVTPKEG----TESFSEYMALSKDKQDELKDVGGFVGGTLKGA 73

Query: 60  ------VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK-----PKILIPFRM 108
                 V  + L   D+D+      +   +  E L    ++   +K     P++ I F +
Sbjct: 74  TRKATDVVSRELVTLDLDNIPGTDLDGILEAVEKLGYAALLYSTRKHTKDKPRLRILFPL 133

Query: 109 NKEGI--KKKKTTESTQGHLDI-------LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
            +     + +         + I           +     +I       +   T     K 
Sbjct: 134 AEPSSVEEYEPLARMLASQIGIDYADPTTFEANRLMYFPSICKGADYLFKVFTGESVKKE 193

Query: 160 EDTPLLSEED--VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217
           E   L  +     E+     + + +     K+     K        +  +          
Sbjct: 194 EVLGLYHDWQNVSEWPTCKTENLLIRKHIAKQGNPLEKNGLIGAFCKTYDIPSAIAKFLK 253

Query: 218 GEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
           G        D W     A    T G+    +    +S   +           + FD   I
Sbjct: 254 GIYVPTDKADRWT---YADGSTTGGAVLYDDDTFLYSHHATDPCSGIL---VNAFDLVRI 307

Query: 278 GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337
                      S      +   K +     SD+                    KA+ + D
Sbjct: 308 HKFGDLDDGVRSTMLESNRPSFKEMEKLVMSDSEAMKCLH-----EERILEAQKAFEEDD 362

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
             +       ++K++   ++     K  V +        +      +   N    +  + 
Sbjct: 363 SEHSK---GEIEKVSKGEVDTEWMNKLLVNEEGRVLPTIDN---FKKVMENDHNLKGKIY 416

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD-LETGQKVKPTKELYITKST 456
            +S               S   +  D         +G+   LE   K+   K+     S 
Sbjct: 417 SDSFTDKKFCGGAVPWDKSGNHEWTDED------DNGLFWYLELFYKIHHEKKANAALSL 470

Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMD-YFTRCVGM--------------------ALL 495
                      ++L  +S  ++++  ++  F   +G                     AL 
Sbjct: 471 VFKDHRINVVADYLKALS--WDNKSRVETLFIDYLGAEDCKYTREITRKTLEACVIRALK 528

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
            G K    + + G  G GKST++  +                          +A  ++  
Sbjct: 529 FGAKYDNMLILVGAQGIGKSTILKKLGK-----------EWFTDSLVKFSGKEAEDTIA- 576

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
             G  IV +SE    +   + +IKQ         R +Y     E P     F   N+  F
Sbjct: 577 --GKWIVEVSELTALNRQESTEIKQFLSTRSSNYRESYARRSKEHPRKCVFFGTSNEDEF 634

Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG-------VKAYIS 668
           +++      RR+  +P D     +D    + L  +   +       G             
Sbjct: 635 LKDTTG--NRRFYPLPVDADRIKKDIW--KDLTEQEVDQIWAEVCFGVSLCEGNYDELEY 690

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
           + L  +  E   +  EE     D Y++ ++
Sbjct: 691 QVLSKESSETLARMHEEY-SEKDPYESLVE 719


>gi|197312891|gb|ACH63226.1| putative 26S proteasome AAA-ATPase subunit RPT6a [Rheum australe]
          Length = 395

 Score = 47.2 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 97/335 (28%), Gaps = 39/335 (11%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ--------NV 396
                     I    + +++ V +L       N  +   R         Q         V
Sbjct: 26  EGLRQYYLQRIHELQLQLRQKVNNLQRLEAQRNDLNSRVRALKEELQLLQEPGSYVGEVV 85

Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLD----SSSRFLGEQDGILDLETGQKVKPTKELYI 452
           +   K+K   +    G         +D    + S  +  ++    L      K    + +
Sbjct: 86  KVMGKSKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALKNDSYVLHLVLPSKVDPLVNL 145

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHI 506
            K    P    +        +      +EV++           +G+A        + + +
Sbjct: 146 MKVEKVPDSTYDMIGGLDQQIKEI---KEVIELPIKHPELFESLGIA------QPKGVLL 196

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G  G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I  
Sbjct: 197 YGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIF 255

Query: 567 TNENDEINAAKIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
            +E D I +A+++  +G      R             E+       +  N+   +   D 
Sbjct: 256 MDEIDSIGSARMESGSGNGDSEVRRTMLELLNQLDGFEASNKIKVLMATNRIDIL---DQ 312

Query: 622 AWWR--RY-IVIPFDKPIANRDASFAQKLETKYTL 653
           A  R  R    I F  P A+      +    K  L
Sbjct: 313 ALLRPGRIDRKIEFPNPNADSRGDILKIHSRKMNL 347


>gi|294486130|gb|ADE87946.1| putative primase [Escherichia phage vB_EcoM_ECO1230-10]
          Length = 767

 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258
             N +  T +EI   LS           + W+ + MAV  E      G  +   WS+Q  
Sbjct: 4   QQNYKDLTEQEIAEALSYIDAG---CDRETWVRMAMAVKSELGDG--GFTVWNDWSRQSD 58

Query: 259 TYDEENFNYKWDTFDFE 275
            Y+ ++    W +    
Sbjct: 59  KYNSKDARDTWKSVKRH 75


>gi|322827263|gb|EFZ31520.1| hypothetical protein TCSYLVIO_2169 [Trypanosoma cruzi]
          Length = 623

 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/121 (9%), Positives = 26/121 (21%), Gaps = 12/121 (9%)

Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH 237
           +                         +     ++ +L     E   G    WI + +   
Sbjct: 470 EGADKDATGAANGASKIPPILLPLTEREAVENVSMWLRTGTREVDVGDWRSWIKLGINTF 529

Query: 238 HET-----------RGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKKRS 285
                             +  +     SK+    Y       KW +FD +++        
Sbjct: 530 RIAYHFRDAQTLRRPAMEELLDAWVEASKKCPMKYRPGVCEAKWSSFDIDKLCKLQDNDW 589

Query: 286 T 286
            
Sbjct: 590 W 590


>gi|1709799|sp|P54814|PRS8_MANSE RecName: Full=26S protease regulatory subunit 8; AltName:
           Full=Protein 18-56
 gi|1167963|gb|AAC46996.1| 18-56 protein [Manduca sexta]
          Length = 402

 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 90/300 (30%), Gaps = 33/300 (11%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +          L+     + 
Sbjct: 44  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDIND 103

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
            +         +  ++    L      K    + +      P    E        +    
Sbjct: 104 VTANC-----RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI- 157

Query: 478 ESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
             +EV++           +G+A        + + + G  G+GK+ L   + +       I
Sbjct: 158 --KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTFI 208

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR- 590
               S+++Q    E  +    L  +       I   +E D I +++I+  +GGD    R 
Sbjct: 209 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 268

Query: 591 ---LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
              L       E+  +    +  N+   +   D A  R  R    I F  P  N +A   
Sbjct: 269 MLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARLD 323


>gi|312071353|ref|XP_003138569.1| 26S protease regulatory subunit 8 [Loa loa]
 gi|307766267|gb|EFO25501.1| 26S protease regulatory subunit 8 [Loa loa]
          Length = 409

 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 99/337 (29%), Gaps = 47/337 (13%)

Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
           S  +   S+K       E+ +             +      N +     +   Q  E GS
Sbjct: 15  SKSSEEQSLKRYYKTKIEDMQQRVAEKTQNLRRLHAQRNELNTKVRMLKEELQQLHEQGS 74

Query: 414 IFSITSDLLDSSSRFLGE---QDGILDLETGQKVK---------------------PTKE 449
                S  +D     +        ++DL+ G  +                      P K 
Sbjct: 75  YVGEVSKAMDKKKVLVKVHPEGKYVVDLDKGIDINSITSGCRVALRADSYALHKVLPNKI 134

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRF 503
             +        V     +    L     E +EV++           +G+A        + 
Sbjct: 135 DPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKG 188

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
           + + G  G+GK+ L   + +       I    S+++Q    E  +    L  +       
Sbjct: 189 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 247

Query: 564 ISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNP 619
           I   +E D I +++++  +GGD    R    L       E+  +    +  N+   +   
Sbjct: 248 IIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL--- 304

Query: 620 DDAWWR--RY-IVIPFDKPIANRDASFAQKLETKYTL 653
           D A  R  R    I F  P     A   +    K  L
Sbjct: 305 DPALLRPGRIDRKIEFPAPDEKARADILKIHSRKMNL 341


>gi|150439359|emb|CAM13082.2| regulatory factor X, 5 (influences HLA class II expression) [Homo
           sapiens]
          Length = 165

 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 10/101 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P       EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 75  GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
            + +ST      +++      IK  ++    +SK    G++
Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIR 165


>gi|86355579|ref|YP_473247.1| Helicase/P143 [Hyphantria cunea nucleopolyhedrovirus]
 gi|86198184|dbj|BAE72348.1| Helicase/P143 [Hyphantria cunea nucleopolyhedrovirus]
          Length = 1230

 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 11/157 (7%)

Query: 485  YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +       +L +  +  ++ +++ GV  SGKST   L+ +       +     D   +  
Sbjct: 902  FMLMHFAASLSVPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDETHTG 955

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
                 ++  + +L       +   NE  + + +  K+        ++        +  A+
Sbjct: 956  ESKETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSSKSDSKSRKYQGLLKYEAN 1011

Query: 604  FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
            +   IV N  L+V + DD    R++++  D      +
Sbjct: 1012 YKMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKFVPHE 1048


>gi|71651122|ref|XP_814245.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70879201|gb|EAN92394.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 623

 Score = 47.2 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/121 (9%), Positives = 26/121 (21%), Gaps = 12/121 (9%)

Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH 237
           +                         +     ++ +L     E   G    WI + +   
Sbjct: 470 EGADKDATGAANGASKIPPILLPLTEREAVENVSMWLRTGTREVDVGDWRSWIKLGINTF 529

Query: 238 HET-----------RGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKKRS 285
                             +  +     SK+    Y       KW +FD +++        
Sbjct: 530 RIAYHFRDAQTLRRPAMEELLDAWVEASKKCPMKYRPGVCEAKWSSFDIDKLCKLQDNDW 589

Query: 286 T 286
            
Sbjct: 590 W 590


>gi|123188200|ref|XP_001281787.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121837350|gb|EAX68857.1| hypothetical protein TVAG_105910 [Trichomonas vaginalis G3]
          Length = 213

 Score = 47.2 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 12/132 (9%)

Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524
           +LD V       +E V +Y        L     K +  + I G  G+GK+T   +++   
Sbjct: 87  WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146

Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
             G          +I           N S+  +       +   +    +N+  +K +  
Sbjct: 147 LEGYSNPNMTNIENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199

Query: 584 GDCMTARLNYGN 595
                    Y +
Sbjct: 200 DKVGVVERKYKD 211


>gi|156544994|ref|XP_001608055.1| PREDICTED: similar to GA13327-PA [Nasonia vitripennis]
          Length = 405

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 90/301 (29%), Gaps = 35/301 (11%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +          L+     + 
Sbjct: 47  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105

Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
                D +    +  ++    L      K    + +      P    E        +   
Sbjct: 106 -----DVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160

Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
              +EV++           +G+A        + + + G  G+GK+ L   + +       
Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
           I    S+++Q    E  +    L  +       I   +E D I +++I+  + GD    R
Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSSGDSEVQR 270

Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643
               L       E+  +    +  N+   +   D A  R  R    I F  P  N +A  
Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325

Query: 644 A 644
            
Sbjct: 326 D 326


>gi|148807425|gb|ABR13498.1| hypothetical protein [Pseudomonas aeruginosa]
          Length = 906

 Score = 46.8 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 55/474 (11%), Positives = 123/474 (25%), Gaps = 53/474 (11%)

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242
              +  +       W + + R     +     +   ++     H+  + +  +       
Sbjct: 256 EAAQLPQRNNRKFDWNDLHQRWMFIDDAAERAAQIEKDLKTARHEGALLIAES----PAE 311

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
            +          +    +    F +K D   F+      +          +  +   K L
Sbjct: 312 KALLMYDWNSRGEFHFRFGNRLFWFKLDLEKFDRAMRAFENSDDHEDKLLNDRQKRDKAL 371

Query: 303 L-ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
             +    +  N    ++Y           ++WY             +D+     +    +
Sbjct: 372 QQSGNVVEIANCFPQALY---FQRNEVTDESWYYFR----------IDRPDDESVKNTFT 418

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
             +               S+  +               ++     +    G     T D 
Sbjct: 419 SAQVAAA-----------SEFKKRLLGVAAGAIFTGSGAQLDQIMKLQLTGLKTVATIDY 467

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKS------------TGTPFVEGEPSQEF 469
           L  S        G + +  G   K   E +                        +   E+
Sbjct: 468 LGYSREHACYVLGDVAVRGGVIEKANAEDFFEFQKLRLKTLQRSIKLQIATDAKDYRPEW 527

Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKYAF 525
           LD +   F ++ ++       G       +A+          G  G+GKSTL+  +    
Sbjct: 528 LDWLWTCFGAKGLVA-LAFWFGSLFAEQIRAEFQSFPFLEATGEAGAGKSTLITFLWKLL 586

Query: 526 G--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
           G  ++   +         R      +N  ++ L   R             +  + K +  
Sbjct: 587 GRADEEGQDPSKMTKAGLRRWLTQLSNMPMVMLEADRSDNSRAGGAAKSFDWDEFKPLFN 646

Query: 584 GDC--MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           G    +T +   GN   E P   T  +  N  +      +A   R + + F +P
Sbjct: 647 GRALGVTGQKTAGNETYEPPFRGTLVMSQNATVQ---ASEAIMTRIVKLHFIRP 697


>gi|17313257|ref|NP_490637.1| hypothetical protein phiCTXp40 [Pseudomonas phage phiCTX]
 gi|4063811|dbj|BAA36265.1| unnamed protein product [Pseudomonas phage phiCTX]
          Length = 895

 Score = 46.8 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 55/474 (11%), Positives = 127/474 (26%), Gaps = 53/474 (11%)

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242
              +  +       W + + R     +    ++   ++     H+  + +  +       
Sbjct: 245 EAAQLPQRNNRKFDWNDLHQRWMFIDDAAERVAQIEKDLKTARHEGALLIAES----AAE 300

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
            +       +  +    +    + +K D   F +   + +          +  ++  K L
Sbjct: 301 KALLMYDWGKRGEFHFRFANRLYWFKLDIEKFNKAMQSLEDSDNHDDQLLNQKQMRDKAL 360

Query: 303 L-ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
             A    +  N    ++Y           ++WY             +D+     +    +
Sbjct: 361 QQAGGVVEIANCFPQALY---FQRNEVTDESWYYFR----------IDRPDDESVKNTFT 407

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
             +               S+  +               ++     +    G     T D 
Sbjct: 408 SAQVAAA-----------SEFKKRLLGVAAGAIFTGSGAQLDQIMKLQLTGLKTVATIDY 456

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKS------------TGTPFVEGEPSQEF 469
           L  S        G + +  G   K   E +                        +   E+
Sbjct: 457 LGYSREHACYVLGDVAVRGGVIEKANAEDFFEFQKLRLKTLQRSIKLQIATDAKDYRPEW 516

Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKYAF 525
           LD +   F ++ ++       G       +A+          G  G+GKSTL+  +    
Sbjct: 517 LDWLWTCFGAKGLVA-LAFWFGSLFAEQIRAEFQSFPFLEATGEAGAGKSTLITFLWKLL 575

Query: 526 G--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
           G  ++   +         R      +N  ++ L   R             +  + K +  
Sbjct: 576 GRADEEGQDPSKMTKAGLRRWLTQLSNMPMVMLEADRSDNSRAGGAAKSFDWDEFKPLFN 635

Query: 584 GDC--MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           G    +T +   GN   E P   T  +  N  +      +A   R + + F +P
Sbjct: 636 GRALGVTGQKTAGNETYEPPFRGTLVMSQNATVQ---ASEAIMTRIVKLHFIRP 686


>gi|9630034|ref|NP_046252.1| helicase [Orgyia pseudotsugata MNPV]
 gi|2493172|sp|Q83950|V143_NPVOP RecName: Full=ATP-dependent DNA helicase P143
 gi|7436434|pir||T10365 helicase - Orgyia pseudotsugata nuclear polyhedrosis virus
 gi|1209065|gb|AAB60602.1| DNA helicase [Orgyia pseudotsugata single capsid nuclopolyhedrovirus]
 gi|1911342|gb|AAC59095.1| helicase [Orgyia pseudotsugata MNPV]
          Length = 1223

 Score = 46.8 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 11/153 (7%)

Query: 485  YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            Y       +L +  +  ++ +++ GV  SGKST   L+ +       +     D   +  
Sbjct: 895  YMLMHFAASLSVPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDDTHTG 948

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
                 ++  +  L       +   NE  + + +  K+        ++        +  A+
Sbjct: 949  ASKETSDKEVSNLN----SEVYTINELKKCSESFFKKHADSSKSDSKSRKYQGLLKYEAN 1004

Query: 604  FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
            +   IV N  L+V + DD    R++++  D   
Sbjct: 1005 YKMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1037


>gi|242005917|ref|XP_002423806.1| 26S protease regulatory subunit, putative [Pediculus humanus
           corporis]
 gi|212507022|gb|EEB11068.1| 26S protease regulatory subunit, putative [Pediculus humanus
           corporis]
          Length = 414

 Score = 46.8 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 92/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 56  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 107

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 108 DKNIDINDVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 167

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 168 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 217

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+   GGD   
Sbjct: 218 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESANGGDSEV 277

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 278 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 332

Query: 642 SFA 644
              
Sbjct: 333 RLD 335


>gi|170040376|ref|XP_001847977.1| rfx5 [Culex quinquefasciatus]
 gi|167863935|gb|EDS27318.1| rfx5 [Culex quinquefasciatus]
          Length = 286

 Score = 46.8 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +   N+      + + Y  + E     D K +ST      +KQ  
Sbjct: 77  RSEINHTINWVRSHLEHDPNVSIPKQEVYEDYIAFCE---RIDIKPLSTADFGKVMKQ-- 131

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              GI+  ++     S+     ++
Sbjct: 132 VFPGIRPRRLGTRGHSRYCYAAMR 155


>gi|9627366|ref|NP_041834.1| E1 protein [Human papillomavirus type 49]
 gi|549231|sp|P36729|VE1_HPV49 RecName: Full=Replication protein E1; AltName: Full=ATP-dependent
           helicase E1
 gi|397033|emb|CAA52581.1| early protein [Human papillomavirus type 49]
          Length = 609

 Score = 46.8 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/314 (11%), Positives = 85/314 (27%), Gaps = 40/314 (12%)

Query: 333 WYKKDKNNVYIWSLTL--DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390
           WYK   ++            +  ++++   +     FDLSE  +    +  +        
Sbjct: 279 WYKGSMDSSVYAHGAYPDWIVNQTMISHQAAADAMQFDLSEMIQWAYDSDLTDEADIAYL 338

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
           Y +    +++     A + +A                       +     G+    +   
Sbjct: 339 YAKMANSDSNARAWLAHNNQAR--------------YLRECAQMVRHYRRGEMRDMSMSE 384

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
           +I         EG    E +  +   F+    + +        + G  K    +   G  
Sbjct: 385 WIHHRIQQVEGEG-HWSEIVKFIR--FQEINFIIFL-DAFKQFIHGKPKKSCLLI-HGPP 439

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET--N 568
             GKS     +      + +    A            K+   L  L   +I ++ +    
Sbjct: 440 DCGKSMFAMSLLKVLKGKVISFVNA------------KSQFWLSPLSECKIGLLDDATDP 487

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTY-SESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
               I+   ++    G+ ++    +        P      I  N ++   +     + R 
Sbjct: 488 CWQYIDT-YLRNGLDGNVVSVDCKHKTPMQIRFPP---LLITSNYNIKANDKYKFLYSRI 543

Query: 628 IVIPFDKPIANRDA 641
            +  F      ++ 
Sbjct: 544 AIFEFKHKFPFKED 557


>gi|218670885|ref|ZP_03520556.1| hypothetical protein RetlG_04143 [Rhizobium etli GR56]
          Length = 266

 Score = 46.8 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 47/150 (31%), Gaps = 5/150 (3%)

Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
           L    + + V     ++        +     ++T  ++            +   D++   
Sbjct: 63  LADAAKALDVDTAASRERGDRQVGQSFTTRTEWTEAQLMDVAEKLPNT--DLDWDDFNST 120

Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
            MA +    GSS G E  R +S + + +D+     +W+ +      D          +  
Sbjct: 121 GMAFYDAAHGSSHGYEAFRTFSAKSAKHDDAETEARWEHYKSSPP-DRISGTWLIDRVRK 179

Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322
               +    L     S+   + +  ++  G
Sbjct: 180 FADPMYV--LPHPELSEVEKQELRDLFHSG 207


>gi|96979825|ref|YP_611030.1| helicase [Antheraea pernyi nucleopolyhedrovirus]
 gi|94983358|gb|ABF50298.1| helicase [Antheraea pernyi nucleopolyhedrovirus]
          Length = 1212

 Score = 46.8 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 486  FTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                   +L       ++ +++ GV  SGKST   L+ +       +     D   +   
Sbjct: 884  MLMHFAASLSAPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDETHTGE 937

Query: 545  EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                ++  + +L       +   NE  + + +  K+         +        +  A++
Sbjct: 938  SRETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSSKCDTKSRKYQGLLKYEANY 993

Query: 605  TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
               IV N  L+V + DD    R++++  D   
Sbjct: 994  KMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1025


>gi|284504072|ref|YP_003406787.1| highly derived D5-like helicase-primase [Marseillevirus]
 gi|282935510|gb|ADB03825.1| highly derived D5-like helicase-primase [Marseillevirus]
          Length = 806

 Score = 46.8 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 58/462 (12%), Positives = 135/462 (29%), Gaps = 62/462 (13%)

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDV----FDLSEEPEDNNKNSKSPRFWFNTDYRR 393
            +  Y W+    + +  +      M++DV      +      +                +
Sbjct: 371 SDRWY-WANFSMEFSGKVYKNREEMRDDVVPNMRRVFAYVPGSGNVVVKANKDECFKIHK 429

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
            +  +++  K   Q      +  I+       +       G L        +    L I 
Sbjct: 430 SSFVKSAAIKFFLQVEGVKELLPISLANFFQENHLSFTVHG-LCFFPFSPEEDDSRLPIE 488

Query: 454 KSTGTPFVEGEPSQE---------FLDLVSGYFES--EEVMDYFTRCVGMALLGGNKAQ- 501
                   + +P  E          LD +   +    +E  DY    +   +    +   
Sbjct: 489 YINTFEGFKAQPVDEGVDREKIRPLLDHLFEIWADGSKENFDYIISWLSHIIKNPREKTG 548

Query: 502 -RFIHIRGVGGSGKSTLMNLI-KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
              + +    G+GK  + + +    FG +        + + +R             L   
Sbjct: 549 VALVILSEAQGAGKGIITDFLLDKVFGRKLGKCIGDIERVVHRFNSV---------LDKK 599

Query: 560 RIVIISETNEND----EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
            +V++ E N+ D      +   IK +     +        T  E        +  N    
Sbjct: 600 LLVVLDEMNQVDAGAYHKSFDVIKHLITEKTVQIERKGVETTEEESF-VNFILTTNNTFS 658

Query: 616 VR----NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
           V+    +   A +R             +D  + ++L    + E  + F+K +  +    +
Sbjct: 659 VKVEQSDRRYAMFR-------CSDKRAKDFDYFRELAGSLSDECARHFIKFLIDWGGVDI 711

Query: 672 DVDIPEVC--LKAKEEERQGTDTYQAWID----DCCDIGENLWEESHSLAKSYSEYREQE 725
             +IPE     + +   +  +   Q +++    +  D  E+ W  +  + + +  + +  
Sbjct: 712 K-NIPETSLKKECRNNSKNAS---QLFLEDFSTEEYDKDEDGWFSATEVYQDFVMWAQNN 767

Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
                K I    V      K F     +++  K  K   + K
Sbjct: 768 G---YKNIPNANVFGRTAGKVFG----KKRQRKNGKLALMWK 802


>gi|158635116|gb|ABW76420.1| helicase [Antheraea pernyi nucleopolyhedrovirus]
          Length = 1212

 Score = 46.8 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 486  FTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                   +L       ++ +++ GV  SGKST   L+ +       +     D   +   
Sbjct: 884  MLMHFAASLSAPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDETHTGE 937

Query: 545  EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                ++  + +L       +   NE  + + +  K+         +        +  A++
Sbjct: 938  SRETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSSKCDTKSRKYQGLLKYEANY 993

Query: 605  TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
               IV N  L+V + DD    R++++  D   
Sbjct: 994  KMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1025


>gi|146229724|gb|ABQ12289.1| helicase [Antheraea pernyi nucleopolyhedrovirus]
          Length = 1212

 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 486  FTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                   +L       ++ +++ GV  SGKST   L+ +       +     D   +   
Sbjct: 884  MLMHFAASLSAPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDETHTGE 937

Query: 545  EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                ++  + +L       +   NE  + + +  K+         +        +  A++
Sbjct: 938  SRETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSSKCDTKSRKYQGLLKYEANY 993

Query: 605  TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
               IV N  L+V + DD    R++++  D   
Sbjct: 994  KMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1025


>gi|293369975|ref|ZP_06616542.1| VirE N-terminal domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292634893|gb|EFF53415.1| VirE N-terminal domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 325

 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 82/270 (30%), Gaps = 35/270 (12%)

Query: 39  QLLSSEKIDKLPACGFGFVC--GVGE----------QPLYAFDIDSKDEKTANTFKDTFE 86
           +    E+  K        +   GV              L   DID KD  + +  +   +
Sbjct: 42  RETDDEEKRKYLKSSLPAITVSGVFSKRRADSLIRPSNLICIDIDGKDNPSISDMEKFKK 101

Query: 87  ILHGTPIV------RIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQY------ 134
            L   P V        G+    +IP+    +        +     ++I+           
Sbjct: 102 RLAELPYVMYCGLSASGKGAFCIIPYDDFGKHKLYFNALQREFKEMEIIIDSSCSDICRL 161

Query: 135 -FVAYNIHP----KTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189
            F +Y+ HP      +         +   ++   + S+   +   +   E    L  ++ 
Sbjct: 162 RFYSYDEHPYVNWDAEVYTHTMEKTNIAHLKSKEVFSKRSSD--IQISNENPRALSIEEA 219

Query: 190 SIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--GSHDEWIPVVMAVHHETRGSSKGK 247
            + PS     +        E    L+   E   +     ++WI + + + +      KG 
Sbjct: 220 LLQPSNLDFASATPLSKTEEAERLLNLVIERQIDITPIFNDWIKIGLVIKNLF--GDKGL 277

Query: 248 EIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
           ++  + S     Y +E    K+   + ++ 
Sbjct: 278 DLFLKVSSFHPKYSQEEAESKYFELNEKKY 307


>gi|324517522|gb|ADY46845.1| 26S protease regulatory subunit 8 [Ascaris suum]
          Length = 407

 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 94/329 (28%), Gaps = 47/329 (14%)

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
           +K       E+ +                    N +     +   Q  E GS     S  
Sbjct: 21  LKRYYKTKIEDAQQRVTEKTQNLRRLQAQRNELNSKVRMLKEELQQLHEQGSYVGEVSKA 80

Query: 422 LDSSSRFLGE-QDGILDLETGQKVK-----------------------PTKELYITKSTG 457
           +D     +    +G   ++  + +                        P K   +     
Sbjct: 81  MDKKKVLVKVHPEGKYVVDVDKGIDVSAVNAGCRVALRADSYALHKILPNKVDPLVSLMM 140

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGG 511
              V     +    L     E +EV++           +G+A        + + + G  G
Sbjct: 141 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPG 194

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           +GK+ L   + +       I    S+++Q    E  +    L  +       I   +E D
Sbjct: 195 TGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 253

Query: 572 EINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-- 625
            I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R  
Sbjct: 254 SIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPG 310

Query: 626 RY-IVIPFDKPIANRDASFAQKLETKYTL 653
           R    I F  P     A   +    K  L
Sbjct: 311 RIDRKIEFPAPDEKARADILKIHSRKMNL 339


>gi|324515052|gb|ADY46074.1| 26S protease regulatory subunit 8 [Ascaris suum]
          Length = 465

 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 94/329 (28%), Gaps = 47/329 (14%)

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
           +K       E+ +                    N +     +   Q  E GS     S  
Sbjct: 79  LKRYYKTKIEDAQQRVTEKTQNLRRLQAQRNELNSKVRMLKEELQQLHEQGSYVGEVSKA 138

Query: 422 LDSSSRFLGE-QDGILDLETGQKVK-----------------------PTKELYITKSTG 457
           +D     +    +G   ++  + +                        P K   +     
Sbjct: 139 MDKKKVLVKVHPEGKYVVDVDKGIDVSAVNAGCRVALRADSYALHKILPNKVDPLVSLMM 198

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGG 511
              V     +    L     E +EV++           +G+A        + + + G  G
Sbjct: 199 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPG 252

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           +GK+ L   + +       I    S+++Q    E  +    L  +       I   +E D
Sbjct: 253 TGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 311

Query: 572 EINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-- 625
            I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R  
Sbjct: 312 SIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPG 368

Query: 626 RY-IVIPFDKPIANRDASFAQKLETKYTL 653
           R    I F  P     A   +    K  L
Sbjct: 369 RIDRKIEFPAPDEKARADILKIHSRKMNL 397


>gi|9634291|ref|NP_037830.1| ORF70 helicase [Spodoptera exigua MNPV]
 gi|2394409|gb|AAB96630.1| ORF70 helicase [Spodoptera exigua MNPV]
          Length = 1222

 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 12/146 (8%)

Query: 495  LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
            +  +  +  +++ G  GSGKS+   +  +         A  +   ++             
Sbjct: 917  IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFIVVHKHDTANYTLTKKDTNEMEAD------ 970

Query: 555  RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
                  I  +   NE    + +  K         +    Y  +  +   +F   IV NK 
Sbjct: 971  ----KMISQLYVINEMKVCDDSFFKSTADSTKSNSVCRKYEGSQ-KYEGNFKLMIVNNKP 1025

Query: 614  LFVRNPDDAWWRRYIVIPFDKPIANR 639
            L + + D     R+ VI  D      
Sbjct: 1026 LHISDYDKGVRNRFAVIYTDHLFEEN 1051


>gi|2665485|gb|AAB88621.1| putative DNA helicase [Spodoptera exigua MNPV]
          Length = 1222

 Score = 46.8 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 12/146 (8%)

Query: 495  LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
            +  +  +  +++ G  GSGKS+   +  +         A  +   ++             
Sbjct: 917  IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFIVVHKHDTANYTLTKKDTNEMEAD------ 970

Query: 555  RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
                  I  +   NE    + +  K         +    Y  +  +   +F   IV NK 
Sbjct: 971  ----KMISQLYVINEMKVCDDSFFKSTADSTKSNSVCRKYEGSQ-KYEGNFKLMIVNNKP 1025

Query: 614  LFVRNPDDAWWRRYIVIPFDKPIANR 639
            L + + D     R+ VI  D      
Sbjct: 1026 LHISDYDKGVRNRFAVIYTDHLFEEN 1051


>gi|325193390|emb|CCA27721.1| AlNc14C654G12337 [Albugo laibachii Nc14]
          Length = 470

 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 22/173 (12%)

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           + +D    C+G +L    +  R + + G GG+GKS  +N       N   + A  S    
Sbjct: 196 DSLDTLMWCIGNSLRDPVQTPRMLFLFGEGGNGKSVAINT---LISNLPCVVATLSRDYI 252

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISET-NENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
            R  +          +    I       N + ++N A +K ++G D +T+    G     
Sbjct: 253 GRTTQQLTETDLERIMTHRFICYGDVVLNRHRQVNEAFLKIVSGNDAVTSSRMSG----- 307

Query: 600 SPASFTPFIVPNKHLFVRNPD--DAWWRRYIVIPFDKP----------IANRD 640
                      N             + RR + +  +KP             +D
Sbjct: 308 -RLQCGGLFATNALWKAYPSVMMPWFSRRVVCVELNKPQPGTTQPREHFTEQD 359


>gi|333024418|ref|ZP_08452482.1| hypothetical protein STTU_1922 [Streptomyces sp. Tu6071]
 gi|332744270|gb|EGJ74711.1| hypothetical protein STTU_1922 [Streptomyces sp. Tu6071]
          Length = 210

 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 3/88 (3%)

Query: 75  EKTANTFKDTFEILH-GTPIVRIGQKP-KILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132
              A   +   E      P  R  + P      +       + + T  +    +D    G
Sbjct: 9   PDGAAHLRALAEQHGQPVPSTRTVRTPSGGTHLYFPAPAAARLRNTAGTLAPLVDTRAWG 68

Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
            Y VA      T + Y    P     + 
Sbjct: 69  GYVVAPGSILPTGQ-YESVAPFALRPLP 95


>gi|257052762|ref|YP_003130595.1| conjugation protein [Halorhabdus utahensis DSM 12940]
 gi|256691525|gb|ACV11862.1| conjugation protein [Halorhabdus utahensis DSM 12940]
          Length = 1342

 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 6/82 (7%)

Query: 693  YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
               +  +      +    + ++  +Y E+ E          S       L         +
Sbjct: 1261 IGVFAAERLREDGDAIVMTAAVYDAYCEWAEDRGLPVE---SKNWFARRLSNH---VSFE 1314

Query: 753  REKIEKEWKSKRIIKGLKLKPA 774
            R    ++  + R   G+ L+  
Sbjct: 1315 RTAENRDGTTVRCYAGIDLQEG 1336


>gi|156102222|ref|XP_001616804.1| ATP-dependent protease [Plasmodium vivax SaI-1]
 gi|148805678|gb|EDL47077.1| ATP-dependent protease, putative [Plasmodium vivax]
          Length = 1017

 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 107/359 (29%), Gaps = 37/359 (10%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
            L+ MK+++    +     ++  +           ++ + E +  +  +    A      
Sbjct: 322 ILLKMKKELSTNLKNK--FDEEKEKLMIRECISNLKKKIGEKTDHEILSDKFFAKFQSKR 379

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE----FLDLV 473
           +    ++S+  L E +             +   Y+      PF +  P  E        +
Sbjct: 380 SHMGEEASAAILRELNKFSLYSEHCSDYASTYQYLNTVLSIPFGKYAPLCEDISACERTL 439

Query: 474 SGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           +   +   +V  Y    VG+ +L  N   + + + G  G GK+++   I  A    + I 
Sbjct: 440 TKSHYGLHQVKRYILEYVGLYILNKNVKPKILTLVGYPGIGKTSICKSISSALQLPHCII 499

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE---INAAKIKQMTGGDCMTA 589
              +    N     G     +    G  +  +  T+  +    ++       T G+  +A
Sbjct: 500 NMNNITSMN--ELIGHRRTYVNSYEGRIVQALISTDVMNPLIVLDELDKISFTNGNVYSA 557

Query: 590 ---------RLNYGNTYSESPAS---FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
                       Y + Y   P +          N    +         R  V+    P  
Sbjct: 558 LLNLFDSSQNKGYKDVYVNFPINIGRAFFICTANSVEHIPET---LLDRMEVVH-VYPYT 613

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
           N +  F  K   K  ++ +          IS+GL + +        +         + +
Sbjct: 614 NEEKVFIFKNYLKKKIQEETKVTDEYLH-ISEGLLLYV-------IQNYTNEN-GLRQF 663


>gi|90592797|ref|YP_529750.1| helicase [Agrotis segetum nucleopolyhedrovirus]
 gi|71559247|gb|AAZ38246.1| helicase [Agrotis segetum nucleopolyhedrovirus]
          Length = 1213

 Score = 46.8 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 12/146 (8%)

Query: 495  LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
            +  +  +  +++ G  GSGKS+   +  +        +A+ +   ++             
Sbjct: 908  IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFVVVHKHDSAKYTLTKKDTNEMEAD------ 961

Query: 555  RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
                  I  +   NE    + +  K         T    Y  +  +   +F   IV NK 
Sbjct: 962  ----KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGSQ-KYEGNFKLLIVNNKP 1016

Query: 614  LFVRNPDDAWWRRYIVIPFDKPIANR 639
            L + + D     R+ VI  D      
Sbjct: 1017 LHISDYDKGVRNRFAVIYTDHLFEEN 1042


>gi|549225|sp|Q05112|VE1_HPV30 RecName: Full=Replication protein E1; AltName: Full=ATP-dependent
           helicase E1
 gi|396976|emb|CAA52545.1| early protein [Human papillomavirus type 30]
          Length = 631

 Score = 46.8 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 83/291 (28%), Gaps = 29/291 (9%)

Query: 358 FLVSMKEDVFDLSEE-PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
           F  +   ++ D+  E PE   + ++    + +  +    + + +         +    ++
Sbjct: 303 FYKTAMSNISDIYGETPEWIQRQTQIQHSFQDCQFELSKMVQWAFDNDVTDDSDIAFYYA 362

Query: 417 ITSDLLDSSSRFLGEQD--GILDLETGQKVKPTKE------LYITKSTGTP--FVEGEPS 466
             +D+ DS+++   + +       + G   +  K             T       EG   
Sbjct: 363 QLADV-DSNAQAFLKSNMQAKYVKDCGIMCRHYKRAQQQQMNMKQWITHICSKVDEGGDW 421

Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
           +  +  +   ++  + + +      + L G  K    + + G   +GKS     +   F 
Sbjct: 422 RPIVQFLR--YQGVDFISFL-SYFKLFLRGTPKHN-CLVLYGPPNTGKSCFAMSLIQFF- 476

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
                +  +     +        N  L  L  +        +E           +  G+ 
Sbjct: 477 ---QGSVISYVNSHSHFWLQPLDNAKLGMLDDATDACWRYIDEYMR-------NLLDGNP 526

Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           ++    +              I  N +            R  V+PF  P  
Sbjct: 527 VSLDRKHKQLVQIKCPP--VIITTNINPLHDAKLQYLHSRIHVVPFLNPFP 575


>gi|298249962|ref|ZP_06973766.1| hypothetical protein Krac_2588 [Ktedonobacter racemifer DSM 44963]
 gi|297547966|gb|EFH81833.1| hypothetical protein Krac_2588 [Ktedonobacter racemifer DSM 44963]
          Length = 98

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
           +  + ++ +CC + E    E   L  ++  Y ++    +          + L Q+G+   
Sbjct: 22  NVVEQFLQECCILEEQQSIEDAQLFANFRAYYKRVWQGEPHPALLGQFRVELTQRGYHSS 81

Query: 751 IKREKIEKEWKSKRIIKGLKLKPA 774
             +              GL L+P 
Sbjct: 82  SDKHPT---------WYGLTLRPK 96


>gi|225870596|ref|YP_002746543.1| conjugative transposon DNA recombination protein [Streptococcus
           equi subsp. equi 4047]
 gi|213033071|emb|CAP20354.1| putative conjugative transposon DNA recombination protein
           [Streptococcus equi subsp. equi]
 gi|225700000|emb|CAW93996.1| putative conjugative transposon DNA recombination protein
           [Streptococcus equi subsp. equi 4047]
          Length = 3975

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/357 (10%), Positives = 100/357 (28%), Gaps = 56/357 (15%)

Query: 19  KLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76
             +PL    +  +      W         +      G GF  G         DID   + 
Sbjct: 34  TKLPLMPNKEPAKSNDKATWNSYEDCIMALKHNVGEGLGFFLG---DGYIGIDIDKVSDD 90

Query: 77  T---------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127
                     ++   D    +     +   +   +         G  +         +L+
Sbjct: 91  IMEYNTNHHVSSMTADFLREVSTYAEISPSKTG-LHFI------GKGEVPGERKRYKNLE 143

Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187
           I                 + +T T    + +        + +++ L++ +   T  +  +
Sbjct: 144 IY-------------DKDRFFTVTGNVIKDRDRSKIESIDSELKPLYEKYMPKTNKISAE 190

Query: 188 KKSIIPSKTWTNNNN--RQYTNREITAFLSCFGEEFYNGSHD---------EWIPVVMAV 236
            K      ++  + +   +  +R   ++      + Y G+++         ++  +   +
Sbjct: 191 NKRSPTVTSYNGDQDILEKLFDRGYFSYAGEDLRQIYYGNYERYFNSQSEADFFMLQRLL 250

Query: 237 HHETR-------GSSKGKEIARRWSKQGSTYDEENFNYK-WDTFDFEEIGDTA-KKRSTF 287
           ++            S G +  + + ++G+T        K   + +     +     +   
Sbjct: 251 YYTGNVEMAISFMESSGLKREKWYKRRGNTDYIHYIADKAISSINQFYDWEKVYTSKEKI 310

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344
               Y + K   +G    R+     K +   + K  F    D    Y K   N Y +
Sbjct: 311 EEKRYENKKKK-EGDTVPRYEFDEVKQIL-DFAKEEFKENIDRYETYLKVMGNNYKY 365


>gi|290988944|ref|XP_002677130.1| predicted protein [Naegleria gruberi]
 gi|284090736|gb|EFC44386.1| predicted protein [Naegleria gruberi]
          Length = 452

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 110/390 (28%), Gaps = 60/390 (15%)

Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
                   + ++L   KE V + ++      K+          D  R +       +   
Sbjct: 69  LRILRLERVKDYLTMEKEFVTNQTKLLTAQEKSKDMEEERNMVDELRGSPMAVGTLEEII 128

Query: 407 QSLEAGSIFSITSD-------LLDSSSRFLGEQ----DGILDLETGQKVKPTKELYITKS 455
               A    S+  +       ++D      G      +  L +    + +    + + K 
Sbjct: 129 DDNHAIVSSSVGPEFYVSILSIVDKDQLEPGCSILMHNRYLAVVGILQDEADPMVSVMKV 188

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
              P           D +      +E +++          +G       K  + + + G 
Sbjct: 189 DKAPLESYSQIGGLEDQIQEI---KEAVEFPLTHPELYEDIG------IKPPKGVILYGE 239

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +     ++    +  I Q    E  K    L R+       I   +E
Sbjct: 240 PGTGKTLLAKAVAHHTSATFLRVVGSELI-QKYLGEGPKLVRELFRVAEELAPSIVFIDE 298

Query: 570 NDEINAAKIKQMTGGD----CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I   +    +GG+         L       +S       +  N    + + D A  R
Sbjct: 299 IDAIGTKRFDSTSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN---RIDSLDTALIR 355

Query: 626 -----RYIVIPFDKPIANR--------------DASFAQKL-ETKYTLEAKKWFL---KG 662
                R I  PF      R              D +  + +        A    +    G
Sbjct: 356 PGRIDRKIKFPFPDVKTKRKIFEIHTRKMSKATDVNLDEFISSKDELSGADIKAICTEAG 415

Query: 663 VKAYISKGLDVDIPEVCLKAKEE--ERQGT 690
           + A   + L V   +   KAKE+   ++  
Sbjct: 416 LLALRERRLQVTQTD-FTKAKEKVLYKKQQ 444


>gi|326425079|ref|YP_004286302.1| primase [Tsukamurella phage TPA2]
 gi|323145731|gb|ADX31975.1| primase [Tsukamurella phage TPA2]
          Length = 869

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 50/187 (26%), Gaps = 26/187 (13%)

Query: 53  GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK--------PKILI 104
            FG   G     +   D D+K  +      D    L   P V    K             
Sbjct: 127 NFGIEVGR--SRVIVVDCDTK-AEVTAFLTDFGAPLDMPPTVTTPGKVVDGEWLHKDGGH 183

Query: 105 PFRMNKEGIKKKKTTE------STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158
            +    EG++              +    IL   +Y V      +    Y          
Sbjct: 184 FYFTLPEGVELPSQPGAMVVGSDPEAKYAILWAQRYVVIPPSIREEG-PYELLG------ 236

Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218
             D P  +EE V+ + +        +  D        T  +  ++Q +  +I + +    
Sbjct: 237 -RDYP-ATEELVDAILEQADRRAARMKHDGPRDEGLATAIDAWSQQVSWSDILSPIGWTP 294

Query: 219 EEFYNGS 225
               +G 
Sbjct: 295 AARPDGC 301


>gi|33622281|ref|NP_891928.1| helicase [Cryptophlebia leucotreta granulovirus]
 gi|33569390|gb|AAQ21676.1| helicase [Cryptophlebia leucotreta granulovirus]
          Length = 1128

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 87/293 (29%), Gaps = 42/293 (14%)

Query: 486  FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
                        N  +  + +      GKS+L  L          I     D  + R   
Sbjct: 809  LINFCASLAQPINNEKMCLVLSSKPNCGKSSLWELFSK-----NKILVYKQDKEEYRH-- 861

Query: 546  AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM-TARLNYGNTYSESPASF 604
            +       ++L  S++ +++E  +  +     +K +     + +AR NYG        +F
Sbjct: 862  SKTERDEKVKLYESQLYVMNEAQKFSK---TFLKTIVDSTRIDSARCNYG-IMENFNITF 917

Query: 605  TPFIVPNK--HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
               +  N+   + +   D A   R   + FD    +                        
Sbjct: 918  KALVCNNEDDKILIHGYDRACSNRIGQMYFDHDFDDS----------SEFSG-------- 959

Query: 663  VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
              +     L     E      +   +     +A++ +      N  +    L   Y  + 
Sbjct: 960  --SVYEHYLKKKYCE-VRDVTD-YLKE--PVRAFLANILQYKCNPKD--GQLY--YKCFL 1009

Query: 723  EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
            + +  Y   +        +L+   ++  +K  K   E+  + +I  +KL   +
Sbjct: 1010 QSDNTYKHNKKCLYIYNNSLEALLYVINVKELKTAPEFSEEVLIDTIKLAEKY 1062


>gi|187922194|ref|YP_001893836.1| Primase 2 [Burkholderia phytofirmans PsJN]
 gi|187713388|gb|ACD14612.1| Primase 2 [Burkholderia phytofirmans PsJN]
          Length = 637

 Score = 46.4 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 9/80 (11%)

Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE 276
                 +G +  W+ +  A+         G +I   WS+    Y E      W +     
Sbjct: 15  ALAMIPSGDYATWVDMAFALKQGF--GEAGFDIWDEWSRTAHNYSERAARVTWRSAGESG 72

Query: 277 IGDTAKKRSTFTSLFYHHGK 296
                    T  SLF+   +
Sbjct: 73  G-------KTLASLFWLAQQ 85


>gi|42779465|ref|NP_976712.1| virulence-associated protein E [Bacillus cereus ATCC 10987]
 gi|42735381|gb|AAS39320.1| virulence-associated protein E [Bacillus cereus ATCC 10987]
          Length = 788

 Score = 46.4 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 60/210 (28%), Gaps = 22/210 (10%)

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           +       V      G K    + + G  G GKST         G+ +  +   +D+   
Sbjct: 484 IRKTMVAAVARIYRPGTKFDSVLILNGPQGIGKSTF---FAKLAGDWFSDSLTITDMKDK 540

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
              E         +L G  ++ + E     + +   +K          R +YG      P
Sbjct: 541 SGAE---------KLQGYWLLELGELAGMRKTDVEIVKSFISRADDKYRASYGVNVESHP 591

Query: 602 ASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
                    N    F+R+      RR+    +   I+      A ++  +   +   W  
Sbjct: 592 RQCVIVGSTNAESGFLRDITG--NRRF----WPVRISGNSRKKAWQMTKEEVQQI--WA- 642

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
           + +  Y          +    A  E+    
Sbjct: 643 EALVLYEKGEKLYLEGDDVTMATSEQADAM 672


>gi|168050549|ref|XP_001777721.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162670941|gb|EDQ57501.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 850

 Score = 46.4 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 110/361 (30%), Gaps = 50/361 (13%)

Query: 339 NNVYIWSLTLDKITASIMNFLVSM----------KEDVFDLSEEPEDNNKNSKSPRFWFN 388
           N  ++ S TLD +       L+            K+  + L++E     K+ K+      
Sbjct: 154 NLTFVISGTLDSLEREEAEHLIKSHGGRVTGSVSKKTDYLLADEDIGGRKSQKAKELGVK 213

Query: 389 TDY--------RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
                      R+   +  + +    +  E      +   ++  +      +  I +   
Sbjct: 214 FITEDGLFEMIRKTKPKAAATSSQAPRPSEPAQPQKVIKPIIPKTDDVRNVKGKIAN--- 270

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCV-------GMA 493
                 T      + +     E  P +     ++    ++ ++      +       G A
Sbjct: 271 -----GTSSSVGNEKSIASGTESWPYKHRPQSINDIIGNQSIVKQVQDWLVQWEKHHGNA 325

Query: 494 LLGG-----NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY--VINAEA---SDIMQNRP 543
           + G         ++ + + G  G GK+T   L+    G +   V  ++    SD      
Sbjct: 326 VKGKKGSSSTSQKKAVLLSGPPGIGKTTTARLVCDLLGYEALEVNASDTRGKSDSNVKNG 385

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
                +N     +    +   S++     +   ++  M+GGD    R    +      +S
Sbjct: 386 IGGKTSNTIKEMISNRSLGFGSKSERKAVLIMDEVDGMSGGD----RGGVADLILSIKSS 441

Query: 604 FTPFIV-PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
             P I   N     +          + +PF KP   + A   Q++     LE     L+ 
Sbjct: 442 HIPIICICNDKYSQKLKS--LINYCLPLPFRKPTKQQMAKRLQQIAKSEGLEVDDLALEE 499

Query: 663 V 663
           +
Sbjct: 500 L 500


>gi|289628549|ref|ZP_06461503.1| DNA primase-like protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330870316|gb|EGH05025.1| DNA primase-like protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 903

 Score = 46.4 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 67/529 (12%), Positives = 143/529 (27%), Gaps = 40/529 (7%)

Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
           P   + +++ P        ++ +  +                K   N+ ++++   +   
Sbjct: 226 PLLVWALDNEPSARGYLQRWVKQSRELGYSCAAALVPQNGRRKVDWNDLHQRWGFEDTDK 285

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
                  +     H+      + +    R  +               + E      W  F
Sbjct: 286 REQRRQRDLDVARHEG----DLLLAPSPREKAILMYTWED--STSEFHFEFANRMYWAKF 339

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF---LYTAD 329
           D  ++ D  ++R+   S  + +  L  +              M +          +    
Sbjct: 340 DLSKLED--EQRALLNSDDHDNQLLNDRQARTKVLESVCALKMIANCNFEALYKQVNDVT 397

Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389
             AW+    +         +K T +      S +     +              +     
Sbjct: 398 GDAWFYFQVDT--PNDNAPEKFTFTPKQISSSSEFKARLMYAGATWLGTQKHLDQIVIRQ 455

Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVKP-- 446
               + VE       + +                        Q G +         +   
Sbjct: 456 TEGLKTVETIDFIGYSKEHKAYIFND-------------YAVQGGNVYKANDEDYFEFGQ 502

Query: 447 TKELYITKSTGTPFVEGEP--SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR-- 502
           T+   + KS               +L  +   F  + ++       G       +A    
Sbjct: 503 TRVKCLMKSIKISMASTSKGYRDNWLASLWLCFGEKGLVALTY-WFGSLFAEQIRADYES 561

Query: 503 --FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
             F+ + G   SGK+TL+  +   FG  Y     A   +  R    G+ +   + L+ + 
Sbjct: 562 FPFLEMSGEPDSGKTTLIKFLWKLFGRIYEGFDPAKGSISGRSRAMGQVSNIPLVLLEAD 621

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
               +E  ++ E +    K   GG  +  R    N+       F   IV  ++  V    
Sbjct: 622 RNTDAENAKSFEWDE--FKDYYGGGLLRTRGVKNNSNDTYEPPFRASIVIAQNAGVSGH- 678

Query: 621 DAWWRRYIVIPFDKP-IANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
           +A   R   + F KP I     + A  L      +   + +K +KA   
Sbjct: 679 EAILSRITKLYFAKPIITEESRAAADALVQTEVGDVSHFMVKAMKAEHK 727


>gi|256048950|ref|XP_002569488.1| 26S protease regulatory subunit [Schistosoma mansoni]
 gi|227281165|emb|CAY19061.1| 26S protease regulatory subunit, putative [Schistosoma mansoni]
          Length = 431

 Score = 46.4 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 104/342 (30%), Gaps = 50/342 (14%)

Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS----KSPRFWFNTDY 391
           K   + +I++  +  +          +   V  L EE +   +      +  +       
Sbjct: 51  KIDEHQFIYTEKVLNLRRLEAQ-RNELNAKVRMLREELQLLQEQGSFVGEVIKAMDKKKV 109

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
             +   E        +++E   I       L S S  L             K+ P+K   
Sbjct: 110 LVKVQPEGKYVVDIDKNIEMSQISPNCRVALRSDSYTL------------HKILPSKVDP 157

Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIH 505
           +        V     +    L     E +EV++           +G+A        + + 
Sbjct: 158 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVL 211

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G  G+GK+ L   + +       I    S+++Q    E  +    L  +       I 
Sbjct: 212 LYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 270

Query: 566 ETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
             +E D I + +++  TGGD    R    L       E   +    +  N+   +   D 
Sbjct: 271 FMDEVDSIGSTRLESGTGGDSEVQRTMLELLNQLDGFEPKQNIKVIMATNRIDIL---DS 327

Query: 622 AWWR--RY-IVIPFDK----------PIANRDASFAQKLETK 650
           A  R  R    I F             I +R  +  + ++ +
Sbjct: 328 ALLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNLTRDIDLR 369


>gi|296394514|ref|YP_003659398.1| hypothetical protein Srot_2113 [Segniliparus rotundus DSM 44985]
 gi|296181661|gb|ADG98567.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
          Length = 191

 Score = 46.4 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 16/132 (12%)

Query: 11  KQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDI 70
           +     G +   +          G W     +S         G G + G     L  +DI
Sbjct: 60  RWCRRVGKRPYTIDGRPASSADPGTWSSYAAASRSK---FGHGVGVMLG---DGLGCWDI 113

Query: 71  DS-KDEKTANTFKDTFEILHGTP--IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127
           D          +      L G P  + R      + +  R +             QG ++
Sbjct: 114 DHCLQGGRLAPWARQALSLVGDPVFVERSLSGDGLHVFVRADPA-------PGWRQGGVE 166

Query: 128 ILGCGQYFVAYN 139
               G +     
Sbjct: 167 FSSSGHFIAVTG 178


>gi|254561108|ref|YP_003068203.1| hypothetical protein METDI2682 [Methylobacterium extorquens DM4]
 gi|254268386|emb|CAX24341.1| hypothetical protein METDI2682 [Methylobacterium extorquens DM4]
          Length = 582

 Score = 46.4 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 27/194 (13%)

Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
               +     GG GK+    L+          +   SD++              I L   
Sbjct: 321 HLVVVFYSKAGGPGKTEFSKLLTSPLSELRSGSTLLSDVVDKSN----------IDLFSQ 370

Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
            IV++ + ++ DE +    K +   + +  R  +                 N+ +     
Sbjct: 371 PIVLLDDMDKLDEKSVGAFKSVITSEYIDRRKFFKQFMVNVRQQAVFIGTANRPINELVI 430

Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA--KKWFLKGVKAYISKGLDVDIPE 677
           D +  RR++++ F             K + K         W L   ++      D   P 
Sbjct: 431 DPSGHRRFLMLTF--------RHLDHKDQKKIWGTINKINWELL-WRSVSQDDEDPIEP- 480

Query: 678 VCLKAKEEERQGTD 691
                     +  D
Sbjct: 481 -----VLAYMRQED 489


>gi|282856347|ref|ZP_06265626.1| primase [Pyramidobacter piscolens W5455]
 gi|282585718|gb|EFB91007.1| primase [Pyramidobacter piscolens W5455]
          Length = 386

 Score = 46.4 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 27/107 (25%), Gaps = 11/107 (10%)

Query: 32  RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG- 90
               W     +    +   A G  F C     P    D+D                L   
Sbjct: 132 DASTWSSFEAAWALYEAGKAHGVAF-CMTENDPYVFIDMDGCLNDGGRGVIPECRALVND 190

Query: 91  ------TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
                 T   R      + I FR+  +    K       G +++ GC
Sbjct: 191 TVREFCTYTERSVSGKGLHIVFRVADKAPFLK---GQRWGGVEMYGC 234


>gi|220930215|ref|YP_002507124.1| virulence-associated E family protein [Clostridium cellulolyticum
           H10]
 gi|220000543|gb|ACL77144.1| virulence-associated E family protein [Clostridium cellulolyticum
           H10]
          Length = 788

 Score = 46.4 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 60/210 (28%), Gaps = 22/210 (10%)

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           +       V      G K    + + G  G GKST         G+ +  +   +D+   
Sbjct: 484 IRKTMVAAVARIYRPGTKFDSVLILNGPQGIGKSTF---FAKLAGDWFSDSLTITDMKDK 540

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
              E         +L G  ++ + E     + +   +K          R +YG      P
Sbjct: 541 SGAE---------KLQGYWLLELGELAGMRKTDVEIVKSFISRADDKYRASYGVNVESHP 591

Query: 602 ASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
                    N    F+R+      RR+    +   I+      A ++  +   +   W  
Sbjct: 592 RQCVIVGSTNAESGFLRDITG--NRRF----WPVRISGNSRKKAWQMTKEEVQQI--WA- 642

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
           + +  Y          +    A  E+    
Sbjct: 643 EALVLYEKGEKLYLEGDDVTMATSEQADAM 672


>gi|157821255|ref|NP_001101164.1| DNA-binding protein RFX5 [Rattus norvegicus]
 gi|149030729|gb|EDL85766.1| regulatory factor X, 5 (influences HLA class II expression)
           (predicted) [Rattus norvegicus]
          Length = 681

 Score = 46.4 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
           G     P +     EE          WI +  +   +      S+  +Y +Y   E    
Sbjct: 74  GDKSSEPSILSN--EEYMYA----YRWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLAC 125

Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
            + +ST      +++      IK  ++    +SK    G++ K 
Sbjct: 126 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 167


>gi|21232433|ref|NP_638350.1| hypothetical protein XCC3002 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|21114214|gb|AAM42274.1| phage-related protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 887

 Score = 46.4 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 26/220 (11%)

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSG 513
                     ++L  +   F +  ++   T   G       +A           G  G+G
Sbjct: 503 IQRDPEAFRMDWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAGHKSFPFLEATGEAGAG 561

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII----SETNE 569
           K+TL+  +    G      ++       +  +AG+A  ++ ++ G  +V++    SE ++
Sbjct: 562 KTTLLTFLWKLLGR-----SDYEGFDPAKSSKAGRAR-AMGQISGMPVVLLEADRSEPDK 615

Query: 570 --NDEINAAKIKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
                    ++K   GG  +  R   N GN   E P   T  I  N  +   +  +A   
Sbjct: 616 AHAKTFEWDELKDFFGGGTLATRGVRNGGNDTYEPPFRGTIVISQNAAV---DASEAILT 672

Query: 626 RYIVIPFDKPIANRDASFAQK----LETKYTLEAKKWFLK 661
           R + + F +P    ++  A      L+ +         ++
Sbjct: 673 RIVKLHFKRPQVTTESRIAADNLNALQVEELSHFLIKAVR 712


>gi|327288722|ref|XP_003229075.1| PREDICTED: hypothetical protein LOC100556550 [Anolis carolinensis]
          Length = 669

 Score = 46.4 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           WI +  +   +       +  +Y  Y +   N   + +S       +++      IK  +
Sbjct: 98  WIQNHLEEYPDTCLPKQDVYDAYKRYCD---NLCCRSLSAANFGKIMRE--IFPNIKARR 152

Query: 756 IEKEWKSKRIIKGLKLKP 773
           +    +SK    G++ K 
Sbjct: 153 LGGRGQSKYCYSGIRRKT 170


>gi|257076832|ref|ZP_05571193.1| hypothetical protein Faci_07211 [Ferroplasma acidarmanus fer1]
          Length = 324

 Score = 46.4 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 44/188 (23%), Gaps = 21/188 (11%)

Query: 18  FKLIPLRLGDKRPQRLGKWE---EQLLSSEKIDKL--PACGFGFVCGVGEQPLYAFDIDS 72
            + I +   DK P     W+       SSEKI         +G +           D D 
Sbjct: 48  IRAILVSPHDKIPFEHA-WQSSCNYPASSEKIHNYLLKGGNWGLM--HPAGMSIGIDED- 103

Query: 73  KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132
                    ++    L  T     G        F +  E +      +       I G G
Sbjct: 104 -----NEKIRNAALSLGDTARFNTGTPGHFCDLFLIKDEPVGNIPLIDGAY----IRGKG 154

Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
              +           Y      +   V    +   E +E    + +        D K   
Sbjct: 155 GQNLGPGSIHPNGNIY---GSIYLHLVPPVVVTKSELLEVFKPYIKGKEKLSKNDSKPEY 211

Query: 193 PSKTWTNN 200
                  +
Sbjct: 212 KQPLNPYS 219


>gi|123184648|ref|XP_001281150.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121835143|gb|EAX68220.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 174

 Score = 46.4 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 15/170 (8%)

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           +K +           Y +       +    +  N         D   RRY+V+       
Sbjct: 3   LKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSH 58

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695
            +D  +   L    T +                 +   IP    + ++   +   +    
Sbjct: 59  MQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--HTEERQTLLEANKSVYEL 116

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
           +ID+     + +  +  SL  SY +Y ++   Y     S RT   N+K  
Sbjct: 117 FIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 159


>gi|213159302|ref|YP_002321345.1| dnahel [Oryctes rhinoceros virus]
 gi|202073488|gb|ACH96164.1| dnahel [Oryctes rhinoceros virus]
          Length = 1240

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 24/153 (15%)

Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           +S  F+ E V++Y    VG   +  N  ++ + I+G G +GKS     I           
Sbjct: 855 MSANFKPETVVNYL-TAVGATFIPINVLKKLLLIQGDGNTGKSLACKKITSI-------- 905

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE----TNENDEINAAKIKQMTGGDCMT 588
                       +        I  +  R  +        NE  ++N +++K +TG D  +
Sbjct: 906 -----------AQPSAGRFEDISAVMKRASVAEYSAVVLNEAYKLNPSQLKIITGNDDTS 954

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
             + Y   Y         F   N H+  +  DD
Sbjct: 955 VSIFYSQKYELQQMQTIMFGATNVHVSFKGTDD 987


>gi|123162807|ref|XP_001279043.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121827537|gb|EAX66113.1| hypothetical protein TVAG_557900 [Trichomonas vaginalis G3]
          Length = 173

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 50/174 (28%), Gaps = 23/174 (13%)

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           +K +           Y +       +    +  N         D   RRY+V+       
Sbjct: 2   LKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSEAH 57

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695
            +D  +   L    T +                 +   IP    + ++   +   +    
Sbjct: 58  MQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYEL 115

Query: 696 WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
           +ID    +C D          SL  SY +Y ++   Y     S RT   N+K  
Sbjct: 116 FIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAASKRTFLANVKSL 158


>gi|2911554|emb|CAA75458.1| E1 protein [Human papillomavirus type 76]
          Length = 609

 Score = 46.0 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 99/352 (28%), Gaps = 51/352 (14%)

Query: 333 WYKKDKNNVYIWSLTL--DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390
           WYK   ++      T     +  +++    + +   FDLSE  +       +        
Sbjct: 279 WYKGSMDSSVYAHGTYPDWIVNQTMLTHQAAAEAVQFDLSEMIQWAYDTDLTDEADIAYG 338

Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
           Y +    +++     A + +A  +                    +     G+    +   
Sbjct: 339 YAKMAESDSNARAWLAHNSQAKFVRE--------------CAQMVRHYRRGEMRDMSISE 384

Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY--FTRCVGMALLGGNKAQRFIHIRG 508
           +I         EG    E +  +       + +++  F       L G  K    +   G
Sbjct: 385 WIHYRIEQVEGEG-HWSEIVKFIR-----YQGINFILFLDAFKQFLHGKPKKSCLLI-YG 437

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET- 567
               GKS     +      + +    A            K+   L  L   +I ++ +  
Sbjct: 438 PPDCGKSMFAMSLIRVLRGRVISFVNA------------KSQFWLSPLAECKIGLLDDAT 485

Query: 568 -NENDEINAAKIKQMTGGDCMTARLNYGNT-YSESPASFTPFIVPNKHLFVRNPDDAWWR 625
                 I+   ++    G+ ++    +        P      I  N ++   +     + 
Sbjct: 486 DPCWQYIDT-YLRNGIDGNIVSVDCKHKTPLQIRFPP---LLITSNYNIKDNDKYRYLYS 541

Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
           R ++  F      ++    + L T        W  K     +   LD+  PE
Sbjct: 542 RIVIFEFKHKFPFKEDGSPEFLLTDQ-----SW--KSFFKRLWNQLDLSDPE 586


>gi|298241727|ref|ZP_06965534.1| Bifunctional DNA primase/polymerase [Ktedonobacter racemifer DSM
           44963]
 gi|297554781|gb|EFH88645.1| Bifunctional DNA primase/polymerase [Ktedonobacter racemifer DSM
           44963]
          Length = 605

 Score = 46.0 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 44/170 (25%), Gaps = 19/170 (11%)

Query: 67  AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP----FRMNKEGIKKKKTTEST 122
             D D +        ++T + L  +P V+ G     +      + +     K K+   + 
Sbjct: 1   MLDFDGEAG------QETRKRLGLSPHVQTGSGGAHVYLEHPGWLVPTLNSKSKRELGAR 54

Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
              LDI     Y             Y W   P    +   P      +  L       T 
Sbjct: 55  WPGLDIRADDGYAAFCGE--SESGPYLWLRDPQLDPLGCLPEELRAFLNLLQPPVSASTT 112

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232
               +  +   ++  T+              +   G+   +     W+  
Sbjct: 113 REGHEAGAASTARIATST-----LIERALKCIHEQGKGRNDTGF--WLVC 155


>gi|123176736|ref|XP_001280041.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121831141|gb|EAX67111.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 173

 Score = 46.0 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 23/174 (13%)

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           +K +           Y +       +    +  N         D   RRY+V+       
Sbjct: 2   LKSLITDKVGVVERKYRDQRVCENVANFVMVSNNVVPMKLESSD---RRYVVVR-TSDSH 57

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695
            +D  +   L    T                   +   IP    + ++   +   +    
Sbjct: 58  MQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYEL 115

Query: 696 WIDD----CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
           +ID+    C D          SL  SY +Y ++   Y     S RT   N+K  
Sbjct: 116 FIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAASKRTFLANVKNL 158


>gi|126313832|ref|XP_001371486.1| PREDICTED: similar to binding regulatory factor [Monodelphis
           domestica]
          Length = 604

 Score = 46.0 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            WI +  +           +  +Y  Y   E     + +ST      +++      IK  
Sbjct: 94  RWIRNHLEEHTATCLPKQDVYDAYRRYC--ESLACCRPLSTANFGKIIRE--IFPDIKAR 149

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G++ K 
Sbjct: 150 RLGGRGQSKYCYSGIRRKT 168


>gi|91780506|ref|YP_555713.1| putative DNA replication primase [Burkholderia xenovorans LB400]
 gi|91693166|gb|ABE36363.1| Putative DNA replication primase [Burkholderia xenovorans LB400]
          Length = 644

 Score = 46.0 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 9/80 (11%)

Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE 276
                    +  W+ +  A+         G +I   WS+    Y E      W +     
Sbjct: 15  ALAMIPAEDYATWVDMAFALKQGF--GEAGFDIWDEWSRTAHNYSERAARVTWRSAGESG 72

Query: 277 IGDTAKKRSTFTSLFYHHGK 296
                    T  SLF+   +
Sbjct: 73  G-------KTLASLFWLAQQ 85


>gi|172041091|ref|YP_001800805.1| hypothetical protein cur_1411 [Corynebacterium urealyticum DSM
           7109]
 gi|171852395|emb|CAQ05371.1| hypothetical protein cu1411 [Corynebacterium urealyticum DSM 7109]
          Length = 182

 Score = 46.0 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 30/133 (22%), Gaps = 20/133 (15%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFD 69
            +     G + I +            W                  G + G     L   D
Sbjct: 54  PRWTRAAGKRPITITGAPASTTNPSTWTRFATVENDAH-------GIMLG---DGLGCID 103

Query: 70  IDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
           +D       +                 + + Q  K L  F +  E           +G L
Sbjct: 104 LDDCFTATGELTPLAARIVAKN-PKAFIEVSQSGKGLHIFGLRPE------GPGIRRGGL 156

Query: 127 DILGCGQYFVAYN 139
           ++   G++     
Sbjct: 157 EVYSWGRFIRTTG 169


>gi|332374604|gb|AEE62443.1| unknown [Dendroctonus ponderosae]
          Length = 405

 Score = 46.0 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 92/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE     +             +++ + +           E   +  I
Sbjct: 47  QRNELNAKVRMLREELMLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 98

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 99  DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 158

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 159 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 208

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 209 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 268

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 269 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 323

Query: 642 SFA 644
              
Sbjct: 324 RLD 326


>gi|270013070|gb|EFA09518.1| hypothetical protein TcasGA2_TC011620 [Tribolium castaneum]
          Length = 441

 Score = 46.0 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 92/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE     +             +++ + +           E   +  I
Sbjct: 83  QRNELNAKVRMLREELMLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 134

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 135 DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 194

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 195 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 244

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 245 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 304

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 305 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 359

Query: 642 SFA 644
              
Sbjct: 360 RLD 362


>gi|148706811|gb|EDL38758.1| mCG13706, isoform CRA_c [Mus musculus]
          Length = 633

 Score = 46.0 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 25/140 (17%)

Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
           +  ++ D      L+                     G     P   L + EE        
Sbjct: 28  QKFSDNDK-LYLYLQLPSGPSV--------------GEKSSEP--SLLSNEEYMYA---- 66

Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
             WI +  +   +      S+  +Y +Y   E     + +ST      +++      IK 
Sbjct: 67  YRWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKA 122

Query: 754 EKIEKEWKSKRIIKGLKLKP 773
            ++    +SK    G++ K 
Sbjct: 123 RRLGGRGQSKYCYSGIRRKT 142


>gi|91091360|ref|XP_972551.1| PREDICTED: similar to GA13327-PA [Tribolium castaneum]
          Length = 404

 Score = 46.0 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 92/303 (30%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE     +             +++ + +           E   +  I
Sbjct: 46  QRNELNAKVRMLREELMLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 97

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 98  DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 157

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 158 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 207

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 208 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 267

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 268 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 322

Query: 642 SFA 644
              
Sbjct: 323 RLD 325


>gi|49900129|gb|AAH75717.1| Rfx5 protein [Mus musculus]
          Length = 303

 Score = 46.0 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 25/140 (17%)

Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
           +  ++ D      L+                     G     P   L + EE        
Sbjct: 53  QKFSDNDK-LYLYLQLPSGPSV--------------GEKSSEP--SLLSNEEYMYA---- 91

Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
             WI +  +   +      S+  +Y +Y   E     + +ST      +++      IK 
Sbjct: 92  YRWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKA 147

Query: 754 EKIEKEWKSKRIIKGLKLKP 773
            ++    +SK    G++ K 
Sbjct: 148 RRLGGRGQSKYCYSGIRRKT 167


>gi|7716046|gb|AAF68260.1| regulator factor X 5 [Mus musculus]
 gi|111600343|gb|AAI18949.1| Regulatory factor X, 5 (influences HLA class II expression) [Mus
           musculus]
 gi|111600347|gb|AAI18950.1| Regulatory factor X, 5 (influences HLA class II expression) [Mus
           musculus]
          Length = 658

 Score = 46.0 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 25/140 (17%)

Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
           +  ++ D      L+                     G     P   L + EE        
Sbjct: 53  QKFSDNDK-LYLYLQLPSGPSV--------------GEKSSEP--SLLSNEEYMYA---- 91

Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
             WI +  +   +      S+  +Y +Y   E     + +ST      +++      IK 
Sbjct: 92  YRWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKA 147

Query: 754 EKIEKEWKSKRIIKGLKLKP 773
            ++    +SK    G++ K 
Sbjct: 148 RRLGGRGQSKYCYSGIRRKT 167


>gi|71037397|ref|NP_059091.2| regulatory factor X, 5 [Mus musculus]
 gi|148706809|gb|EDL38756.1| mCG13706, isoform CRA_a [Mus musculus]
          Length = 658

 Score = 46.0 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 25/140 (17%)

Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
           +  ++ D      L+                     G     P   L + EE        
Sbjct: 53  QKFSDNDK-LYLYLQLPSGPSV--------------GEKSSEP--SLLSNEEYMYA---- 91

Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
             WI +  +   +      S+  +Y +Y   E     + +ST      +++      IK 
Sbjct: 92  YRWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKA 147

Query: 754 EKIEKEWKSKRIIKGLKLKP 773
            ++    +SK    G++ K 
Sbjct: 148 RRLGGRGQSKYCYSGIRRKT 167


>gi|291234361|ref|XP_002737118.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
          Length = 679

 Score = 46.0 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 5/88 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R        WI    +  ++     H + + Y  + E   +     +S          K 
Sbjct: 45  RAEQTHAFNWIRSHLEESQSTSLPKHEVYEDYRSFCESSNHS---VLSAADFGK--IIKC 99

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPA 774
               IK  ++     SK    G++ K  
Sbjct: 100 VFPTIKARRLGTRGNSKYCYSGIRKKSE 127


>gi|170736572|ref|YP_001777832.1| primase 2 [Burkholderia cenocepacia MC0-3]
 gi|169818760|gb|ACA93342.1| Primase 2 [Burkholderia cenocepacia MC0-3]
          Length = 615

 Score = 46.0 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
                    +  W+ +  AV H       G E+   WS+    YD  +    W +
Sbjct: 15  ALATIPADDYTTWVDMAFAVKH--GLGEAGFELWDAWSQTAPNYDARSARATWRS 67


>gi|116691425|ref|YP_836958.1| hypothetical protein Bcen2424_3324 [Burkholderia cenocepacia
           HI2424]
 gi|116649425|gb|ABK10065.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
          Length = 615

 Score = 46.0 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
                    +  W+ +  AV H       G E+   WS+    YD  +    W +
Sbjct: 15  ALATIPADDYTTWVDMAFAVKH--GLGEAGFELWDAWSQTAPNYDARSARATWRS 67


>gi|261363790|ref|ZP_05976673.1| inner membrane protein [Neisseria mucosa ATCC 25996]
 gi|288568370|gb|EFC89930.1| inner membrane protein [Neisseria mucosa ATCC 25996]
          Length = 805

 Score = 46.0 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270
              +            D W+    ++ HE     +  ++  RWS+Q  +Y   +    W 
Sbjct: 4   RDEIEKALSYIEPHDRDVWVNTAYSLKHEL--GEEAFDMWDRWSQQSDSYRSRDARSVWK 61

Query: 271 TF 272
           + 
Sbjct: 62  SI 63


>gi|268571361|ref|XP_002641019.1| C. briggsae CBR-RPT-6 protein [Caenorhabditis briggsae]
 gi|187030024|emb|CAP30811.1| CBR-RPT-6 protein [Caenorhabditis briggsae AF16]
          Length = 417

 Score = 46.0 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 96/329 (29%), Gaps = 47/329 (14%)

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
           +++      ++ +    +               N +     +   Q  E GS     S  
Sbjct: 31  LRKYFRTKVDDAQQKVADKSQNVRRLQAQRNELNTKVRMLKEELQQLHEQGSYVGEVSKA 90

Query: 422 LDSSSRFLGE-QDGILDLETGQKVK-----------------------PTKELYITKSTG 457
           +D     +    +G   ++  + +                        P K   +     
Sbjct: 91  MDKKKVLVKVHPEGKYVVDVDKTIDINSLNTGARVALRADSYALHKVLPNKVDPLVSLMM 150

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGG 511
              V     +    L     E +EV++           +G+A        + + + G  G
Sbjct: 151 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPG 204

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           +GK+ L   + +       I    S+++Q    E  +    L  +       I   +E D
Sbjct: 205 TGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 263

Query: 572 EINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-- 625
            I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R  
Sbjct: 264 SIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPG 320

Query: 626 RY-IVIPFDKPIANRDASFAQKLETKYTL 653
           R    I F  P     A   +    K  L
Sbjct: 321 RIDRKIEFPAPDEKARADILKIHSRKMNL 349


>gi|134299059|ref|YP_001112555.1| virulence-associated E family protein [Desulfotomaculum reducens
           MI-1]
 gi|134051759|gb|ABO49730.1| virulence-associated E family protein [Desulfotomaculum reducens
           MI-1]
          Length = 818

 Score = 45.6 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 53/177 (29%), Gaps = 20/177 (11%)

Query: 461 VEGEPSQEFLDLVSGYFESEEVM-------DYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
            E +      +++  Y  +E+ +         F   V   +  G K    + + G  G G
Sbjct: 479 DEWDGIPRLEEVLIDYLGAEDSVYTRAVTKKTFVAAVARVMNPGCKFDYMLVLIGKQGLG 538

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KSTL        GN +  +   SD+      E         +L G  I+ I E     + 
Sbjct: 539 KSTL---FTRLAGNWFNDSLSMSDMRDKTAAE---------KLQGYWILEIGELAGFKKA 586

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
               +K          R +YG    E P         N             RR+  +
Sbjct: 587 EVEVVKSFLSRQKDIYRPSYGRRTIEYPRQCVIVGSTNNDTGFLRDSTG-NRRFWPV 642


>gi|134085431|ref|NP_001076812.1| regulatory factor X, 5 (influences HLA class II expression)
           [Xenopus (Silurana) tropicalis]
 gi|134024343|gb|AAI35605.1| rfx5 protein [Xenopus (Silurana) tropicalis]
          Length = 564

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           WI +  +   +       +  +Y  Y +   N   + +S       +++      IK  +
Sbjct: 88  WIRNHLEEHTDTCLPKQDVYDAYKRYCD---NLHGRPLSVANFGKIIRE--IFPNIKARR 142

Query: 756 IEKEWKSKRIIKGLKLKP 773
           +    +SK    GL+ K 
Sbjct: 143 LGGRGQSKYCYSGLRRKS 160


>gi|40675343|gb|AAH64876.1| rfx5 protein [Xenopus (Silurana) tropicalis]
          Length = 557

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           WI +  +   +       +  +Y  Y +   N   + +S       +++      IK  +
Sbjct: 129 WIRNHLEEHTDTCLPKQDVYDAYKRYCD---NLHGRPLSVANFGKIIRE--IFPNIKARR 183

Query: 756 IEKEWKSKRIIKGLKLKP 773
           +    +SK    GL+ K 
Sbjct: 184 LGGRGQSKYCYSGLRRKS 201


>gi|237642071|ref|YP_002887625.1| nonstructural protein NS-1 [Culex pipiens densovirus]
 gi|229554367|gb|ACQ76570.1| nonstructural protein NS-1 [Culex pipiens densovirus]
          Length = 548

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 58/480 (12%), Positives = 127/480 (26%), Gaps = 46/480 (9%)

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA-FLSCFGEEFYNGSH 226
           E  E L K  +E+    ++         TW   ++  +   E  A F      E+     
Sbjct: 71  EAYEDLAKEIEEMGDIFIRYVTGKNIKNTWRYLSDVFFPRGESNANFAMERLREYGRSRR 130

Query: 227 DE---WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
           D    +I     +H     +  G      + K    Y          +F      +    
Sbjct: 131 DRMFGFINEGDHIHIIHDCAYSGGHCRDVFRKHLEPYG---------SFGPARPENKPIW 181

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFS---DAYNKAMFSIYKKGHFLYTADTKAWY----KK 336
           + T T  +        + L     +       ++           +      W     ++
Sbjct: 182 KFTTTDWYDVFQYFFLRKLRNGNDTGEIYIGGESWKKPSNDQLVRWEKKLGTWRPLVRQQ 241

Query: 337 DKNNVYIWSLTLDKITA---SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
           D  +  +   +  K +    +   F     +      +      +       ++      
Sbjct: 242 DNGDHLLDQRSGLKRSNREVAGTPFDEVYGKKTKSSGKYAAIKQETKALLLKYYPCPLSA 301

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
                  +  +     +                  +     I ++  G         Y  
Sbjct: 302 IRDVSEFRNNNLLSDPKNREYIDAAFVDFGKDVNQM-TIRQIYEILKGHT---DPIFYAG 357

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
               T        ++FL     + +++E +  F   +   L      Q    +     SG
Sbjct: 358 MEYATQEESFAILEDFLKF--QFEDNDEKITQFLVDLIDVLDKRVPKQNAFAVISPPSSG 415

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           K+   ++I     N              +  +A + N    +   ++ +++      +  
Sbjct: 416 KNFFFDMIMAICLNY------------GQLGQANRHNLFAFQEAPNKRLLLWNEPNYESA 463

Query: 574 NAAKIKQMTGGDCMTARLNY-GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
               IK M GGD  T R+ Y G+T+          +  N   F++    A+  R  V  +
Sbjct: 464 MTDTIKMMMGGDPYTVRVKYQGDTHVTRTP--VLILTNNYVSFLQES--AFKDRIKVYKW 519


>gi|156407884|ref|XP_001641587.1| predicted protein [Nematostella vectensis]
 gi|156228726|gb|EDO49524.1| predicted protein [Nematostella vectensis]
          Length = 398

 Score = 45.6 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 31/309 (10%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +          ++ G   + 
Sbjct: 40  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKGIDMAE 99

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
            +         +  ++    L      K    + +      P    E        +    
Sbjct: 100 VTPNC-----RVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI- 153

Query: 478 ESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
             +EV++           +G          + + + G  G+GK+ L   + +       I
Sbjct: 154 --KEVIELPVKHPELFEALG------IDQPKGVLLYGPPGTGKTLLARAVAH-HTECTFI 204

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR- 590
               S+++Q    E  +    L  +       I   +E D I +++++  +GGD    R 
Sbjct: 205 RVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRT 264

Query: 591 ---LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
              L       E+  +    +  N+   +   D A  R  R    I F  P         
Sbjct: 265 MLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEFPPPNEEARQDIL 321

Query: 645 QKLETKYTL 653
           +    K  L
Sbjct: 322 KIHSRKMNL 330


>gi|241952094|ref|XP_002418769.1| 26S protease regulatory subunit, putative [Candida dubliniensis
           CD36]
 gi|223642108|emb|CAX44074.1| 26S protease regulatory subunit, putative [Candida dubliniensis
           CD36]
          Length = 463

 Score = 45.6 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 105/361 (29%), Gaps = 29/361 (8%)

Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
           TS+              SR  D        +       Y  +       ++      +  
Sbjct: 33  TSISKSGKLKKFFPFSQSRVQDLIIHHHQEMTTSIDKPYVHEGGIRPYFEQ--QIQDTEI 90

Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
             + T   +  L + +  + +   + +D  +  + P  +     +   +++         
Sbjct: 91  RIQQTTQNLRRLEAQRNKLNNKVRQLKDELRLLQEPGSYVGEVVKVMGLKKVLVKIHPEG 150

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
                    I    L + S  +  +    DL      K    + +      P    +   
Sbjct: 151 KFIVNVTKDIDVKKL-TPSIRVCLKADSHDLYKILPNKIDPLVSLMMVEKVPDSTYDMVG 209

Query: 468 EFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
                +      +EV++           +G+A        + + + G  G+GK+ L   +
Sbjct: 210 GLDKQIKEI---KEVIELPVKHPELFESLGIA------QPKGVILYGPPGTGKTLLARAV 260

Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
            +       I    S+++Q    E  +    L  +       I   +E D I +++++  
Sbjct: 261 AH-HTECKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGS 319

Query: 582 TGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDK 634
           +GGD    R    L       ES       +  N+   +   D A  R  R    I F  
Sbjct: 320 SGGDSEVQRTMLELLNQLDGFESSKDIKIIMATNRLDIL---DPALLRPGRIDRKIEFPA 376

Query: 635 P 635
           P
Sbjct: 377 P 377


>gi|313576841|gb|ADR67016.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp.
           pneumoniae]
          Length = 182

 Score = 45.6 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 47/176 (26%), Gaps = 43/176 (24%)

Query: 614 LFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
           +   +      RR ++I F + +    RD     K+     +   +  ++          
Sbjct: 1   MRFTDRSGGVSRRRVIIHFPEQVAPEERDPQLRDKIAR-ELVVIVRQLMQ---------- 49

Query: 672 DVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENLWEESH---------- 712
               P       + +         ++  D    +    C   E L E             
Sbjct: 50  QFSDPMSARALLQSQQNSDEALSIKRDADPTFDF----CGYLEALPEPDGMYMGNANIIP 105

Query: 713 -----SLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIEKEWK 761
                 L  +Y  Y E     +   ++   + ++  LK+ G     +R     +  
Sbjct: 106 RQPRLYLYHAYLVYMEAHGYRNALSLTMFGKGLSAMLKEYGLNYEKRRTNQGMQTN 161


>gi|296161904|ref|ZP_06844705.1| Primase 2 [Burkholderia sp. Ch1-1]
 gi|295887923|gb|EFG67740.1| Primase 2 [Burkholderia sp. Ch1-1]
          Length = 636

 Score = 45.6 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 9/73 (12%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
             +  W+ +  A+ H       G +I   WS+    Y E      W +            
Sbjct: 22  EDYATWVDMAFAIKHGF--GEAGFDIWDEWSRTAHNYSERAARVTWRSAGESGG------ 73

Query: 284 RSTFTSLFYHHGK 296
             T  SLF+   +
Sbjct: 74  -KTLASLFWLAQQ 85


>gi|318060858|ref|NP_001188134.1| 26S protease regulatory subunit 8 [Ictalurus punctatus]
 gi|308323111|gb|ADO28692.1| 26S protease regulatory subunit 8 [Ictalurus punctatus]
          Length = 430

 Score = 45.6 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 87/309 (28%), Gaps = 28/309 (9%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
                KI           +      ++  E N K             +   V E  K   
Sbjct: 46  DYYCWKIDELQFVVTEKTQNLRRLEAQRNELNAKVRLLREELQLLQEQGSYVGEVIKPMD 105

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLG-EQDGILDLETGQKVKP----TKELYITKSTGTP 459
             + L            +D +        +  + L            +K   +       
Sbjct: 106 KKKVLVKVQPEGKFVVDIDKNIDIASITPNCRVALRNDSYTLHKILPSKVDPLVSLMMVE 165

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSG 513
            V     +    L     E +EV++           +G+A        + + + G  G+G
Sbjct: 166 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPGTG 219

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           K+ L   + +       I    S+++Q    E  +    L  +       I   +E D I
Sbjct: 220 KTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEVDSI 278

Query: 574 NAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY 627
            +A+I+  +GGD    R    L       E   +    +  N+   +   D A  R  R 
Sbjct: 279 GSARIESGSGGDSEVQRTMLELLNQLDGFEPKQNIKVVMATNRIDIL---DSALLRPGRI 335

Query: 628 -IVIPFDKP 635
              I F  P
Sbjct: 336 DRKIEFPAP 344


>gi|294775658|ref|ZP_06741166.1| VirE N-terminal domain protein [Bacteroides vulgatus PC510]
 gi|294450502|gb|EFG18994.1| VirE N-terminal domain protein [Bacteroides vulgatus PC510]
          Length = 698

 Score = 45.6 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 19/183 (10%)

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
                +           +  + +L   +F     ++      G  +           + G
Sbjct: 412 WDGRDRIRPLAQTVPCDNPHWPELFHRWF-----LNMVAHWRG--MDKRYANSVSPLLVG 464

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
             G+ KST    I     ++     ++ D  + +  E      +L        + I E +
Sbjct: 465 AQGTRKSTFCRSIMP--PSECSYYTDSLDFSRKKDVELSLNRFAL--------INIDEFD 514

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           +        +K +     + AR  YG +  E     +     N    + +P  +  RR+I
Sbjct: 515 QVSATQQGFLKHILQKPVVNARRPYGTSVVEMRRYASFIATSNHKDLLTDPSGS--RRFI 572

Query: 629 VIP 631
            I 
Sbjct: 573 CIE 575


>gi|153955276|ref|YP_001396041.1| hypothetical protein CKL_2658 [Clostridium kluyveri DSM 555]
 gi|219855699|ref|YP_002472821.1| hypothetical protein CKR_2356 [Clostridium kluyveri NBRC 12016]
 gi|146348134|gb|EDK34670.1| Phage-related protein [Clostridium kluyveri DSM 555]
 gi|219569423|dbj|BAH07407.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 788

 Score = 45.6 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 61/211 (28%), Gaps = 24/211 (11%)

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           +       V      G K    + + G  G GKST         G+ +  +   +D+   
Sbjct: 484 IRKTMVAAVARIYRPGTKFDSVLILNGPQGIGKSTF---FAKLAGDWFSDSLTITDMKDK 540

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
              E         +L G  ++ + E     + +   +K          R +YG      P
Sbjct: 541 SGAE---------KLQGYWLLELGELAGMRKTDVEVVKSFISRADDKYRASYGVNVESHP 591

Query: 602 ASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
                    N    F+R+      RR+    +   I+      A ++  +   +     L
Sbjct: 592 RQCVIVGSTNAESGFLRDITG--NRRF----WPVRISGNSKKKAWQMTKEEVQQIWAETL 645

Query: 661 KGVKAYISKGLDVD-IPEVCLKAKEEERQGT 690
           +       KG  +    +    A  E+    
Sbjct: 646 E----LYEKGEKLYLEGDDVSMATSEQADAM 672


>gi|321455982|gb|EFX67100.1| hypothetical protein DAPPUDRAFT_64123 [Daphnia pulex]
          Length = 251

 Score = 45.6 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           WI    +    +      + + Y  Y  +      K +ST      +KQ      ++  +
Sbjct: 59  WIQTHLEEDVEVSLPKQEVYEEYGGYCTEN---VIKPLSTADFGKVMKQ--VFPNVRPRR 113

Query: 756 IEKEWKSKRIIKGLKLKPAFES 777
           +     S+    GL+ K     
Sbjct: 114 LGTRGHSRYCYSGLRKKGELSP 135


>gi|57234140|ref|YP_181813.1| virulence-associated protein E, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224588|gb|AAW39645.1| virulence-associated protein E, putative [Dehalococcoides
           ethenogenes 195]
          Length = 789

 Score = 45.6 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 91/311 (29%), Gaps = 44/311 (14%)

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                  V      G K      + G  G GKST+   +       +      +D+    
Sbjct: 494 RKTLVAAVTRIYHPGTKFDTVPVLDGAQGIGKSTMWKSLAG--DEYFSDALSLTDMDDKS 551

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
             E         +L G  I+ I E     + +  K+K          R +YG      P 
Sbjct: 552 GAE---------KLQGFWIIEIGELAGMKKADIEKVKSFLSTSDDKYRPSYGKVVESHPR 602

Query: 603 SFTPFIVPN-KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF-- 659
                   N +H ++R+      RR+ ++   +     + +   K+  +   +       
Sbjct: 603 QCVVVATVNGEHGYLRDITG--NRRFWIVKCRQT----ENAVRWKITPEERDQIWAEAKY 656

Query: 660 --LKGVKAYISKGLDVDIPEVCLKAKE-----------------EERQGTDTYQA--WID 698
              +G K Y+   L  +  E    A E                 E     D YQ   ++D
Sbjct: 657 YYEQGEKLYLEGDLLAEAEEAQRSAMETDERQGLVEQYLSKLLPENWSEMDLYQRRNFLD 716

Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNY--DRKRISTRTVTLNLKQKGFIGGIKREKI 756
                 ++   E   ++ +   + E       D K   +  +   + Q        R   
Sbjct: 717 GDDITSDSGTVERTEVSNA-EIWCECFGRNIADLKPTDSYAIAALMTQVDGWKRTNRRAS 775

Query: 757 EKEWKSKRIIK 767
           +  +  +R+ +
Sbjct: 776 QPLYGRQRLYE 786


>gi|239621741|ref|ZP_04664772.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514932|gb|EEQ54799.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 125

 Score = 45.6 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 29/120 (24%), Gaps = 19/120 (15%)

Query: 27  DKRPQRLGKWEEQLLSSEKIDKLP-------ACGFGFVCGVGEQPLYAFDIDSKDEKTAN 79
            KRP             +     P         G+G + G     L  +D D  D    +
Sbjct: 13  GKRPIMCDGSPASSTDPDTWASYPEVMRSKAGDGYGIMLG---DGLACWDFDHVD--LTS 67

Query: 80  TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
                 E+L       +      L  F  + E           +  ++     ++     
Sbjct: 68  PPAKALELLPDAIYAEVSSSGHGLHVFVESSES-------SFRRAGVEFYSRSRFIRMTG 120


>gi|114331467|ref|YP_747689.1| virulence-associated E family protein [Nitrosomonas eutropha C91]
 gi|114308481|gb|ABI59724.1| virulence-associated E family protein [Nitrosomonas eutropha C91]
          Length = 408

 Score = 45.6 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 96/340 (28%), Gaps = 60/340 (17%)

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGN--------KAQRFIHIRGVGGSGKSTLMN 519
              D ++ +        Y  R     L+G          K    + + G  G GKS+L+ 
Sbjct: 109 RVDDWITDFIH-APKSKYVWRVARWFLVGMVARAMRPGIKFDYCLVLEGDQGRGKSSLL- 166

Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
                 G  +  + +     ++          S+  L G  +  ISE        A K K
Sbjct: 167 ---RVLGGGWFGDTDLDLHSKD----------SMSALRGKWLYEISELGSLARSEATKQK 213

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
                +    R  YG      P         N+  + ++      RR+  I     I   
Sbjct: 214 SFFSREVDEFRPVYGAREVRCPRQLVFCGTTNEWEWNKDQTGG--RRFWPIECTGEINID 271

Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAY--ISKGLDVDIPEVC-LKAKEEERQGTDTYQAW 696
             +  +        +     L G + +    + +D+  PE       +      D  + W
Sbjct: 272 GLAAVRDQLFAEAYQIY---LSGERFWPTNREQIDIFNPEQFRRSVSDSYL---DMIENW 325

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
           I +                  Y E+   ++  D  +I    ++ +++ +      K    
Sbjct: 326 IAE-----------------QYKEFCIADVATDCLKIDAARLSRDVQTRIGSALRKLGCR 368

Query: 757 EKEWKS---KRIIK------GLKLKPAFESVDDNSNIIDF 787
             E ++    R         G   K   +        IDF
Sbjct: 369 RIEKRTHAVTRYWYKAPQEMGSGHKSGQDDAKGEDRGIDF 408


>gi|319642191|ref|ZP_07996851.1| VirE domain-containing protein [Bacteroides sp. 3_1_40A]
 gi|317386177|gb|EFV67096.1| VirE domain-containing protein [Bacteroides sp. 3_1_40A]
          Length = 698

 Score = 45.6 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 19/183 (10%)

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
                +           +  + +L   +F     ++      G  +           + G
Sbjct: 412 WDGRDRIRPLAQTVPCDNPHWPELFHRWF-----LNMVAHWRG--MDKRYANSVSPLLVG 464

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
             G+ KST    I     ++     ++ D  + +  E      +L        + I E +
Sbjct: 465 AQGTRKSTFCRSIMP--PSECSYYTDSLDFSRKKDVELSLNRFAL--------INIDEFD 514

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           +        +K +     + AR  YG +  E     +     N    + +P  +  RR+I
Sbjct: 515 QVSATQQGFLKHILQKPVVNARRPYGTSVVEMRRYASFIATSNHKDLLTDPSGS--RRFI 572

Query: 629 VIP 631
            I 
Sbjct: 573 CIE 575


>gi|190572364|ref|YP_001970209.1| putative phage-like protein [Stenotrophomonas maltophilia K279a]
 gi|190010286|emb|CAQ43894.1| putative phage-related protein [Stenotrophomonas maltophilia K279a]
          Length = 898

 Score = 45.6 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 14/187 (7%)

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKY 523
           E+L  +   F +  ++   T   G       ++           G  G+GK+TL+  +  
Sbjct: 523 EWLQWLWTCFGTNGMVA-LTFWFGSLFANQIRSAHKSFPFLEATGEAGAGKTTLLTFLWK 581

Query: 524 AF--GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
                +    +   S            +   ++ L   R        ++ E +   +K  
Sbjct: 582 LLARSDYEGFDPAKSSKAGRARAMGQTSGMPVVLLEADRDAPDKAHAKSFEWDE--LKDY 639

Query: 582 TGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
            GG  +  R   N GN   E P   T  I  N  +   +  +A   R + + F KP A  
Sbjct: 640 YGGGTLATRGVRNGGNETYEPPFRGTIVISQNAAV---DASEAIMTRIVKLHFRKPNATT 696

Query: 640 DASFAQK 646
           ++  A  
Sbjct: 697 ESRLAAD 703


>gi|254883672|ref|ZP_05256382.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254836465|gb|EET16774.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 698

 Score = 45.6 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 19/183 (10%)

Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
                +           +  + +L   +F     ++      G  +           + G
Sbjct: 412 WDGRDRIRPLAQTVPCDNPHWPELFHRWF-----LNMVAHWRG--MDKRYANSVSPLLVG 464

Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
             G+ KST    I     ++     ++ D  + +  E      +L        + I E +
Sbjct: 465 AQGTRKSTFCRSIMP--PSECSYYTDSLDFSRKKDVELSLNRFAL--------INIDEFD 514

Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           +        +K +     + AR  YG +  E     +     N    + +P  +  RR+I
Sbjct: 515 QVSATQQGFLKHILQKPVVNARRPYGTSVVEMRRYASFIATSNHKDLLTDPSGS--RRFI 572

Query: 629 VIP 631
            I 
Sbjct: 573 CIE 575


>gi|307546785|ref|YP_003899264.1| hypothetical protein HELO_4195 [Halomonas elongata DSM 2581]
 gi|307218809|emb|CBV44079.1| hypothetical protein HELO_4195 [Halomonas elongata DSM 2581]
          Length = 345

 Score = 45.6 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 23/99 (23%), Gaps = 10/99 (10%)

Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
             L    +       + W+ V  A   E      G      WS+Q  +Y   +    W +
Sbjct: 9   DELRLALQYIPADDRETWVNVGNACKTEYGDD--GFAAWDEWSQQAESYKAADAKSVWRS 66

Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA 310
                            ++         +       ++ 
Sbjct: 67  --------LTPGHVRLGTIIKLAQAGGWQRERREMSAED 97


>gi|312376286|gb|EFR23420.1| hypothetical protein AND_12900 [Anopheles darlingi]
          Length = 192

 Score = 45.6 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +   N+      +   Y  Y       + K +ST      +KQ  
Sbjct: 84  RLEINHTINWVRSHLEHDPNVSIPKQEVYDDYVAYCA---RINIKPLSTADFGKVMKQ-- 138

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              GI+  ++     S+     ++
Sbjct: 139 VFPGIRPRRLGTRGHSRYCYAAMR 162


>gi|300022615|ref|YP_003755226.1| hypothetical protein Hden_1091 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524436|gb|ADJ22905.1| hypothetical protein Hden_1091 [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 442

 Score = 45.6 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 10/86 (11%), Positives = 33/86 (38%), Gaps = 12/86 (13%)

Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
             +T + +  +  ++ +     +  L + Y  + + +   +++  +  +      + G  
Sbjct: 352 ENNT-ERFYKENVEVRDGSSVTATELYEDYCSWCDSK---NKEPAALPSFAREFAELG-- 405

Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPA 774
             +K+EK+    +      G+ LK  
Sbjct: 406 --VKKEKVAGRVR----YIGIALKSD 425


>gi|294789713|ref|ZP_06754945.1| primase C 2 (PriCT-2) superfamily [Simonsiella muelleri ATCC 29453]
 gi|294482350|gb|EFG30045.1| primase C 2 (PriCT-2) superfamily [Simonsiella muelleri ATCC 29453]
          Length = 987

 Score = 45.6 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 14/111 (12%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF------------ 272
             + W  +  A+  E      G E+   WS+Q   Y +++    W +             
Sbjct: 18  DRETWFRMGAAIKDEL--GENGFEMWDNWSRQSDNYKQQDAQSVWKSIKVGHIHIASLFK 75

Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
              E G   +K  T  S      +           +    +A     K  +
Sbjct: 76  TARENGYRPEKPYTPPSAEELAKRSQIAQEKQQAEAKRIAQAHAKAEKTAY 126


>gi|1742981|emb|CAA71181.1| helicase [Bombyx mori NPV]
          Length = 1222

 Score = 45.3 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 45/362 (12%), Positives = 110/362 (30%), Gaps = 39/362 (10%)

Query: 279  DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338
            D     +  + L +    LI         +     + F       F    +    Y    
Sbjct: 715  DMFGNDAELSKLIWM---LIFTNKTYVSTTLIRTNSEFVNQHGEFFFKEHNKIIQYLYQT 771

Query: 339  NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
             +   +   L         FL  +++DV    +      ++    +F+ +       +++
Sbjct: 772  IHKIEYVDMLMDKFNDKRLFLTELRDDVAREPDV--QFEESDNICKFYTHHTDALIILKK 829

Query: 399  NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
             +             I + ++D L +          I+ +      + +         G 
Sbjct: 830  YNVWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKMDLKEYSYNYLKKIVEGY 879

Query: 459  PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517
             +        F    +    +             +L +  +  ++ I++ G  GSGKS+ 
Sbjct: 880  LY--------FKRFTNFNHANA----IMLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSF 927

Query: 518  MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAA 576
              L+ Y                 +    +G++N        S++   +   NE  + + +
Sbjct: 928  FELLDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYVINELKQCSES 977

Query: 577  KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
              K+        ++        +  A++   IV NK L+V + DD    R++++  +   
Sbjct: 978  YFKKHADTSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKF 1037

Query: 637  AN 638
             +
Sbjct: 1038 VD 1039


>gi|126135282|ref|XP_001384165.1| protease regulatory subunit 8 homolog (SUG1 protein) (CIM3 protein)
           (TAT-binding protein TBY1) [Scheffersomyces stipitis CBS
           6054]
 gi|126091363|gb|ABN66136.1| protease regulatory subunit 8 homolog (SUG1 protein) (CIM3 protein)
           (TAT-binding protein TBY1) [Scheffersomyces stipitis CBS
           6054]
          Length = 402

 Score = 45.3 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 98/323 (30%), Gaps = 29/323 (8%)

Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385
           Y  +       ++      +    + T   +  L + +  + +   + +D  +  + P  
Sbjct: 10  YVHEGGIRPYFEQ--QIQDTEIKIQQTTQNLRRLEAQRNKLNNKVRQLKDELRLLQEPGS 67

Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445
           +     +   +++                  I    L + S  +  +    DL      K
Sbjct: 68  YVGEVVKVMGLKKVLVKIHPEGKYIVNVTKDIDIKKL-TPSIRVCLKSDSYDLHKILPNK 126

Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNK 499
               + +      P    +        +      +EV++           +G+A      
Sbjct: 127 VDPLVSLMMVEKVPDSTYDMVGGLDKQIKEI---KEVIELPVKHPELFESLGIA------ 177

Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
             + + + G  G+GK+ L   + +       I    S+++Q    E  +    L  +   
Sbjct: 178 QPKGVILYGPPGTGKTLLARAVAH-HTECKFIRVSGSELVQKYIGEGSRMVRELFVMARE 236

Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLF 615
               I   +E D I +++++  +GGD    R    L       ES       +  N+   
Sbjct: 237 HAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFESSKDIKIIMATNRLDI 296

Query: 616 VRNPDDAWWR--RY-IVIPFDKP 635
           +   D A  R  R    I F  P
Sbjct: 297 L---DPALLRPGRIDRKIEFPAP 316


>gi|187939544|gb|ACD38692.1| hypothetical phage protein [Pseudomonas aeruginosa]
          Length = 894

 Score = 45.3 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 57/479 (11%), Positives = 126/479 (26%), Gaps = 64/479 (13%)

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242
              +  +       W + + R     +     +   ++     H+  + +  +       
Sbjct: 245 EAAQLPQRNNRKFDWNDLHQRWMFIDDAAERAAKIEKDLKTARHEGALLIAES----PAE 300

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
            +          +    +    F +K D   F+      +          +  +   K L
Sbjct: 301 KALLMYEWTNRGEFHFRFGNRLFWFKLDLEKFDRAMRAFENSDDHEDKLLNDRQKRDKAL 360

Query: 303 L-ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
             +    +  N    ++Y           ++WY             +D+     +    +
Sbjct: 361 QQSGNVVEIANCFPQALY---FQRNEVTDESWYYFR----------IDRPDDESVKNTFT 407

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
             +               S+  +               ++     +    G     T D 
Sbjct: 408 SAQVAAA-----------SEFKKRLLGVAAGAIFTGSGAQLDQIMKLQLTGLKTVATIDY 456

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKS------------TGTPFVEGEPSQEF 469
           L  S        G + +  G   K   E +                        +   E+
Sbjct: 457 LGYSREHACYVLGDVAVRGGVIEKANAEDFFEFQKLRLKTLQRSIKLQIATDAKDYRPEW 516

Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKYAF 525
           LD +   F ++ ++       G       +A+          G  G+GKSTL+  +    
Sbjct: 517 LDWLWTCFGAKGLVA-LAFWFGSLFAEQIRAEFQSFPFLEATGEAGAGKSTLITFLWKLL 575

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-------KI 578
           G       + S + +            L +L    +V++     ++    A       + 
Sbjct: 576 GRADEEGQDPSKMTK------AGLRRWLTQLSNMPMVLLEADRSDNNRGTAAKAFDWDEF 629

Query: 579 KQMTGGDC--MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           K +  G    +T +   GN   E P   T  I  N  +      +A   R + + F +P
Sbjct: 630 KPLFNGRSLGVTGQKTAGNETYEPPFRGTLVISQNATVV---ASEAIMTRIVKLHFSRP 685


>gi|154249627|ref|YP_001410452.1| ABC transporter related [Fervidobacterium nodosum Rt17-B1]
 gi|154153563|gb|ABS60795.1| ABC transporter related [Fervidobacterium nodosum Rt17-B1]
          Length = 580

 Score = 45.3 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 9/173 (5%)

Query: 256 QGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
           +G  ++E+++N    TF   E       R       +         L        + K++
Sbjct: 100 KGLGFNEDDWNRNISTFSGGEKTRLQLGRLFIEEPDFLLLDEPTNFLDIESI--EFLKSL 157

Query: 316 FSIYKKGHFLYTADT-------KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
              YK G+ + + D          +++ +   V+I+ +  D+        + + +  V +
Sbjct: 158 LKSYKGGYIIISHDRDFLRSVCDKFWEINNERVWIFDMDFDRYHLERQRIMETQRRQVAN 217

Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
           + +E E         + W    + +Q   +    +   + LE      +  + 
Sbjct: 218 IQKEIERLRTIIDRYKKWGREKFTKQAKSKEKMLEKMLEELENMPNLYLEEEE 270


>gi|112180595|gb|AAH51965.1| Rfx5 protein [Mus musculus]
          Length = 570

 Score = 45.3 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            WI +  +   +      S+  +Y +Y   E     + +ST      +++      IK  
Sbjct: 5   RWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKAR 60

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G++ K 
Sbjct: 61  RLGGRGQSKYCYSGIRRKT 79


>gi|300853542|ref|YP_003778526.1| phage-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300433657|gb|ADK13424.1| phage-related protein [Clostridium ljungdahlii DSM 13528]
          Length = 787

 Score = 45.3 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 71/229 (31%), Gaps = 30/229 (13%)

Query: 468 EFLDLVSGYFESEE-------VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
              +L+  YF + +       +       V      G K    + + G  G GKST    
Sbjct: 463 RVENLLIDYFGAADSTYTKAVIRKTMVAAVARIYQPGTKFDSVLILNGPQGIGKSTF--- 519

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
                G  +  +   +D+     PE         +L G  ++ + E     + +   +K 
Sbjct: 520 FAKLAGEWFSDSLTITDMKDKAGPE---------KLQGYWMLELGELAGMRKTDVEIVKS 570

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLFVRNPDDAWWRRYIVIPFDKPIANR 639
                    R +YG      P         N ++ F+R+      RR+    +   I+  
Sbjct: 571 FISRVDDKYRASYGVNVENHPRQCIIVGSTNAENGFLRDISG--NRRF----WPVRISGN 624

Query: 640 DASFAQKLETKYTLEAKKWFL----KGVKAYISKGLDVDIPEVCLKAKE 684
               + ++ T+   +     +    +G K Y+     +        A E
Sbjct: 625 STKKSWQITTEEVQQILAEAIFLYKQGEKLYLEGDDAILASGEQADAME 673


>gi|170694124|ref|ZP_02885279.1| Primase 2 [Burkholderia graminis C4D1M]
 gi|170140864|gb|EDT09037.1| Primase  2 [Burkholderia graminis C4D1M]
          Length = 632

 Score = 45.3 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 11/115 (9%)

Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD 261
           NR+Y   E  A             +  W+ +  A+         G  I   WS+    Y 
Sbjct: 2   NRRYLTEEERAR--AALATIPAEDYMTWVDMAFALKQGF--GEAGFPIWDDWSRTAHNYS 57

Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMF 316
           E      W +              T  SL++   +       +   SD   ++  
Sbjct: 58  ESAARVTWRSAGESGG-------KTLASLYWLAQQHGFDVRASRAASDPAERSRM 105


>gi|206562201|ref|YP_002232964.1| hypothetical protein BCAM0337 [Burkholderia cenocepacia J2315]
 gi|198038241|emb|CAR54195.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 615

 Score = 45.3 bits (105), Expect = 0.044,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
           G +  W+ +  AV H       G ++   WS+    YD  +    W +
Sbjct: 22  GDYSTWVDMAFAVKH--GLGEAGFDLWDAWSQTAPNYDARSARATWRS 67


>gi|313677591|ref|YP_004055587.1| hypothetical protein Ftrac_3509 [Marivirga tractuosa DSM 4126]
 gi|312944289|gb|ADR23479.1| hypothetical protein Ftrac_3509 [Marivirga tractuosa DSM 4126]
          Length = 405

 Score = 45.3 bits (105), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 67/230 (29%), Gaps = 20/230 (8%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEEVMDYFTRCVG 491
           DG  +  +    + T            +   E   + F   ++  F  +   +       
Sbjct: 58  DGFCNYPSHTNYQETIGKLFNTYKKLNYEPKEGSIENFKAYMNHIF--QSQYELGLDYF- 114

Query: 492 MALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
             L             +    G+GK+T++NL K  FG+   +N       Q     + + 
Sbjct: 115 TILYQKPTQALPILCLVSRERGTGKTTILNLSKLIFGDNMTVNKTEDFRSQYNEDWSSEL 174

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                      ++ I E   + + ++ +IK ++      ++  Y     E        + 
Sbjct: 175 -----------LIGIDEALLDRKEDSERIKNLSTAKTTKSQAKYKQR-VEQEFFGKFILC 222

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
            N        D     RY VI   KP    +  F  +   K       + 
Sbjct: 223 SNHEETFIPIDQGET-RYWVIK-VKPFEGEEDPFLIEKLEKEIPAIMHFL 270


>gi|161019537|gb|ABX56103.1| E1 [Macaca fascicularis papillomavirus type 5]
          Length = 628

 Score = 45.3 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 28/201 (13%)

Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
            +G   ++ +  +   +++ E + +    +   L G  K    I + G   +GKS     
Sbjct: 413 DDGGDWRQIVQFLR--YQNVEFITFL-SALKNFLKGIPKKN-CIVLYGPPNTGKSYFGMS 468

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           +          +  +     +       ++  +  L  +     S  +            
Sbjct: 469 LMKFL----QGSIISYVNSSSHFWLQPLSDAKVAMLDDATPACWSYIDNYMR-------N 517

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW--RRYIVIPFDKPIA- 637
              G+ MT    Y N          P ++ +        D   +   R +V  F +P   
Sbjct: 518 ALDGNPMTIDRKYKNL---IQMKCPPLLITSNT-NAGTDDRWLYLHSRLVVFTFKQPFPF 573

Query: 638 NRDASFAQKLETKYTLEAKKW 658
           +R+ +   +L  K       W
Sbjct: 574 DRNGNPVYELNDK------NW 588


>gi|88195260|ref|YP_500063.1| hypothetical protein SAOUHSC_01547 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|87202818|gb|ABD30628.1| conserved hypothetical phage protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
          Length = 665

 Score = 45.3 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 19/168 (11%)

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +   +  G K    + + G  G GKS L+  +          +     +      EA   
Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
                 L G  ++ ++E     +     IK          R+ YG+   + P        
Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
            NK  F+R+      RR+   P        + +++ KL      +   
Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWA 663


>gi|268592747|ref|ZP_06126968.1| ATPase, AAA-superfamily [Providencia rettgeri DSM 1131]
 gi|291311523|gb|EFE51976.1| ATPase, AAA-superfamily [Providencia rettgeri DSM 1131]
          Length = 373

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 76/224 (33%), Gaps = 27/224 (12%)

Query: 445 KPTKELYITKSTGTPFVEGEP--SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR 502
                L + K++ TP V  +P  + E  + +       + ++     +G+      +  R
Sbjct: 80  DEDSRLTLLKTSPTPEVISKPLLNSEIENALDQLILERKNINKLEE-LGL------QPTR 132

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRI 561
                G  G GK+   + +    G  + +    + +             +L     G  +
Sbjct: 133 SAIFVGPPGVGKTLTASWLAQKLGVPFYVLDLTAVMSSYLGKSGNNLRAALDFAKKGPCV 192

Query: 562 VIISETN-----ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
           +++ E +      +D+ +  ++K++                 + P+S       N    +
Sbjct: 193 LLLDEIDSIAKKRSDDSDVGELKRLVT--------VILQEVDQWPSSSLLLAATNYEELI 244

Query: 617 RNPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
              D A WRR+ +V+ F+KP +       Q+          +W 
Sbjct: 245 ---DPALWRRFDLVLHFEKPNSETIKEAIQRFLGADYAIFARWI 285


>gi|56708874|ref|YP_164917.1| hypothetical protein SPOA0086 [Ruegeria pomeroyi DSS-3]
 gi|56680559|gb|AAV97224.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 603

 Score = 44.9 bits (104), Expect = 0.049,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 29/160 (18%)

Query: 38  EQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIG 97
           +  L  + +   P              L   D+D K  K A    D    L  T  V  G
Sbjct: 71  DIELVQKALRTHPRANLAISLA----GLTVVDVDGKAGKQAVEGLD----LPKTVKVFTG 122

Query: 98  QKPKILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHR 156
           +     + ++       +          +D+L G  +  +       + K Y +++    
Sbjct: 123 R--GYHLYYQ------GECSGGAFKGDEIDVLTGANRMVMVPPSTHPSGKRYRYSSQ--- 171

Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKT 196
                    S   +  + K   ++     + +K    + +
Sbjct: 172 ---------SPSGMAAMPKNLSKLKPDRTQHRKEGPQTAS 202


>gi|14602327|ref|NP_148874.1| ORF90 HELICASE [Cydia pomonella granulovirus]
 gi|14591845|gb|AAK70750.1|U53466_90 ORF90 HELICASE [Cydia pomonella granulovirus]
          Length = 1131

 Score = 44.9 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 99/351 (28%), Gaps = 63/351 (17%)

Query: 449  ELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFT-------------------- 487
            +L I    G    +          ++ Y    +E+ +                       
Sbjct: 754  DLLIVHQPGENMYDWLTRFYIRSFLNDYTGDMKELYNVVLGFSYFRVFTNFHSNNSKALI 813

Query: 488  RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
                   +  N  +  + +      GKS+L  L                   +     + 
Sbjct: 814  NFCASFAIPINNEKMCLVLSSKPNCGKSSLWELFSK-------NKILVYKQDKEEYKHSK 866

Query: 548  KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM-TARLNYGNTYSESPASFTP 606
                  ++L  S++ +++E  +  +     +K +     M +AR NYG        +F  
Sbjct: 867  SERDEKVKLYESQLYVMNEAQKFSK---TFLKTIVDSTRMDSARCNYG-IVEMFNITFKA 922

Query: 607  FIVPNKHLFV--RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
             +  N+   +     D A   R   + FD    + +                        
Sbjct: 923  LVCNNEDDKILVDGYDRACSNRIGQMYFDHDFDDSN----------EFSG---------- 962

Query: 665  AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
            +     +     E      +   +  D  +A++ +      N  +    L   Y  + + 
Sbjct: 963  SVYEHHIRKRYCE-VRDVTD-YLK--DPVRAFLANVLQHKCNPID--GQLY--YKCFLQG 1014

Query: 725  ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
            +  Y   +        +++   ++  +K  K  +E+  + +I  +KL   +
Sbjct: 1015 DNTYKHNKKCLYIYNNSIEALLYVMNVKEVKTAQEFSHETLIDTIKLAEKY 1065


>gi|308463093|ref|XP_003093824.1| CRE-RPT-6 protein [Caenorhabditis remanei]
 gi|308249314|gb|EFO93266.1| CRE-RPT-6 protein [Caenorhabditis remanei]
          Length = 408

 Score = 44.9 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 95/329 (28%), Gaps = 47/329 (14%)

Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
           +++      +  +    +               N +     +   Q  E GS     S  
Sbjct: 27  LRKYFRTKVDAAQQKVADKSQNVRRLQAQRNELNTKVRMLKEELQQLHEQGSYVGEVSKA 86

Query: 422 LDSSSRFLGE-QDGILDLETGQKVK-----------------------PTKELYITKSTG 457
           +D     +    +G   ++  + +                        P K   +     
Sbjct: 87  MDKKKVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYALHKVLPNKVDPLVSLMM 146

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGG 511
              V     +    L     E +EV++           +G+A        + + + G  G
Sbjct: 147 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPG 200

Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
           +GK+ L   + +       I    S+++Q    E  +    L  +       I   +E D
Sbjct: 201 TGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 259

Query: 572 EINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-- 625
            I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R  
Sbjct: 260 SIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPG 316

Query: 626 RY-IVIPFDKPIANRDASFAQKLETKYTL 653
           R    I F  P     A   +    K  L
Sbjct: 317 RIDRKIEFPAPDEKARADILKIHSRKMNL 345


>gi|187903120|ref|YP_001883411.1| hypothetical protein MdSGHV083 [Musca domestica salivary gland
            hypertrophy virus]
 gi|187384769|gb|ACD03542.1| hypothetical protein MdSGHV083 [Musca domestica salivary gland
            hypertrophy virus]
          Length = 1780

 Score = 44.9 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 12/146 (8%)

Query: 488  RCVGMALLGGNKAQRFIHIRGVGGSGKSTLM--NLIKYAFGNQYVINAEASDIMQNRPPE 545
            R      +  NK +          +GKS  +     ++     +    + S + Q     
Sbjct: 1477 RLWARVTVPRNKHRISPLFTLHTATGKSEYLTERCRRHFNNKYFNNVLDPSSLAQTDHRG 1536

Query: 546  AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
                   + R + + +++     E + +  AK KQ+ G   +  +  + +T      + T
Sbjct: 1537 -----TDMARELNTNLIVC--IEEFNSL-TAKFKQVCGYTSVAYKPLFADTKVSFQNNST 1588

Query: 606  PFIVPNKHLFVRNPDDAWWRRYIVIP 631
              +  N     +  ++A   R  V P
Sbjct: 1589 VILSTNNDP--KCNEEAIVARLHVYP 1612


>gi|1592665|emb|CAA66227.1| large non-structural protein [Aleutian mink disease virus]
          Length = 620

 Score = 44.9 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 97/358 (27%), Gaps = 59/358 (16%)

Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA------ 332
              + R+    ++   G   P      +    YNK +    +   F+Y  +         
Sbjct: 202 KDPEDRAKNLKVWIEDGPTKPYKYFNKQTKQDYNKPVH--LRDYTFIYLFNKDKINTDSM 259

Query: 333 -WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK--------NSKSP 383
             Y    N   + +LT  +       +L     D+ D + + ED+          +S + 
Sbjct: 260 DGYFAAGNGGIVDNLTNKERKTLRKMYLDEQSSDIMDANIDWEDSQDAPKVTDQTDSATT 319

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE------------ 431
           +   +  ++    +  SK +      +           LD+                   
Sbjct: 320 KTGTSLIWKSCATKVTSKKEVANPVQQPSKKLYSAQSTLDALFNVGCFTPEDMIIKQSDK 379

Query: 432 -------QDGILDLETGQKVKPTKELYITKSTGTP----FVEGEPSQEFLDLVSGYFESE 480
                   +G    +    +   +    T  T       F E E  +  L  +     +E
Sbjct: 380 YLELSLEPNGP--QKINTLLHMNQVKTSTMITAFDCIVKFNEEEDDKPLLATIKDMGLNE 437

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           +   Y  + +   L      +  I   G GG+GK+ L +LI  A  N  ++         
Sbjct: 438 Q---YLKKVLCTILTKQGGKRGCIWFYGPGGTGKTLLASLICKATVNYGMVTT------- 487

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                    N          I+   E            K +TGG  +          S
Sbjct: 488 ------SNPNFPWTDCGNRNIIWAEECGNFGNWVED-FKAITGGGDVKVDTKNKQPQS 538


>gi|301312248|ref|ZP_07218165.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300829670|gb|EFK60323.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 396

 Score = 44.9 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 56/200 (28%), Gaps = 28/200 (14%)

Query: 466 SQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
            Q  L  +   F    E+ +DY        +    K    + +     +GKST +NL+K 
Sbjct: 88  CQVTLGFIRHIFGEHYELGLDYMQLLY---MKPITKLPILVLVSKENNTGKSTFLNLLKM 144

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
            FG     N       Q     A              I+ + ET  N   +  +IK ++ 
Sbjct: 145 IFGKNMTFNTNEDFRSQFNSDWAN-----------KLIIGVDETLLNRMEDTERIKNLST 193

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNK----HLFVRNPDDAWWRRYIVIPFDKPIANR 639
                     G   +E           N               W R+        P+ N 
Sbjct: 194 AFTYKIEGK-GKDRAEIEFFGKFVFCSNNEENALYISPGETRFWVRKI------HPLTNG 246

Query: 640 DASFAQKLETKYTLEAKKWF 659
           D  F +KL          + 
Sbjct: 247 DPLFLRKL-KSEIPAFLYFL 265


>gi|62087652|dbj|BAD92273.1| proteasome 26S ATPase subunit 5 variant [Homo sapiens]
          Length = 345

 Score = 44.9 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 82/266 (30%), Gaps = 34/266 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 77  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 133

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 134 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 187

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 188 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 246

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 247 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 303

Query: 626 --RYIVIPFDKPIANRDASFAQKLET 649
             R      D+ I     +   +L+ 
Sbjct: 304 PGRI-----DRKIEFPPPNEEARLDL 324


>gi|148236805|ref|NP_001085482.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Xenopus
           laevis]
 gi|49255977|gb|AAH72829.1| MGC80185 protein [Xenopus laevis]
 gi|116284353|gb|AAH45221.1| MGC80185 protein [Xenopus laevis]
          Length = 415

 Score = 44.9 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 97/330 (29%), Gaps = 47/330 (14%)

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR--------------- 393
              +   +         + DL     D ++N +  +   N    +               
Sbjct: 20  MDESRGGIGLRQYYSSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQG 79

Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG--EQDGILDLETGQKVKP----T 447
             V E  +A    + L            +D +   +     +  + L             
Sbjct: 80  SYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNID-INDVTPNCRVALRNDSYTLHKILPN 138

Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQ 501
           K   +        V     +    L     E +EV++           +G+A        
Sbjct: 139 KVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QP 192

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
           + + + G  G+GK+ L   + +   +   I    S+++Q    E  +    L  +     
Sbjct: 193 KGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHA 251

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVR 617
             I   +E D I +++++  +GGD    R    L       E+  +    +  N+   + 
Sbjct: 252 PSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL- 310

Query: 618 NPDDAWWR--RY-IVIPFDKPIANRDASFA 644
             D A  R  R    I F  P  N +A   
Sbjct: 311 --DSALLRPGRIDRKIEF--PPPNEEARLD 336


>gi|125860194|ref|YP_001036364.1| DNA helicase [Spodoptera frugiperda MNPV]
 gi|120969339|gb|ABM45782.1| DNA helicase [Spodoptera frugiperda MNPV]
 gi|167833753|gb|ACA02629.1| helicase [Spodoptera frugiperda MNPV]
 gi|319997407|gb|ADV91305.1| DNA helicase [Spodoptera frugiperda MNPV]
          Length = 1228

 Score = 44.9 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 12/146 (8%)

Query: 495  LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
            +  +  +  +++ G  GSGKS+   +++ +       +A+ +   ++             
Sbjct: 923  IPTDYEKCCLYLNGKPGSGKSSFFAVLEPSVVVHKHDSAKYTLTKKDTNEMEAD------ 976

Query: 555  RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
                  I  +   NE    + +  K         +    Y  +  +  A+F   IV NK 
Sbjct: 977  ----KMISQLYVINEMKVCDDSFFKSTADSTKSNSVCRKYEGSQ-KYEANFKLLIVNNKP 1031

Query: 614  LFVRNPDDAWWRRYIVIPFDKPIANR 639
            L + + D     R+ VI  D      
Sbjct: 1032 LHISDYDKGVRNRFAVIYTDHLFEEN 1057


>gi|327275516|ref|XP_003222519.1| PREDICTED: 26S protease regulatory subunit 8-like [Anolis
           carolinensis]
          Length = 414

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 89  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 145

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 146 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 199

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 200 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 258

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 259 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 315

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 316 PGRIDRKIEF--PPPNEEARLD 335


>gi|317419381|emb|CBN81418.1| 26S protease regulatory subunit 8 [Dicentrarchus labrax]
          Length = 398

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 73  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 129

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 130 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 183

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 184 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 242

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 243 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 299

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 300 PGRIDRKIEF--PPPNEEARLD 319


>gi|297273389|ref|XP_002800610.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 2 [Macaca
           mulatta]
          Length = 422

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 97  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 153

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 154 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 207

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 208 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 266

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 267 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 323

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 324 PGRIDRKIEF--PPPNEEARLD 343


>gi|281351659|gb|EFB27243.1| hypothetical protein PANDA_013936 [Ailuropoda melanoleuca]
          Length = 357

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 32  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 88

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 89  MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 142

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 143 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 201

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 202 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 258

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 259 PGRIDRKIEF--PPPNEEARLD 278


>gi|229366526|gb|ACQ58243.1| 26S protease regulatory subunit 8 [Anoplopoma fimbria]
          Length = 406

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 81  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327


>gi|225707968|gb|ACO09830.1| 26S protease regulatory subunit 8 [Osmerus mordax]
          Length = 406

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 81  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327


>gi|197128441|gb|ACH44939.1| putative proteasome 26S subunit ATPase 5 variant 1 [Taeniopygia
           guttata]
          Length = 411

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 86  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 142

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 143 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 196

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 197 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 255

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 256 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 312

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 313 PGRIDRKIEF--PPPNEEARLD 332


>gi|149054556|gb|EDM06373.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_b
           [Rattus norvegicus]
          Length = 416

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 91  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 147

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 148 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 201

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 202 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 260

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 261 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 317

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 318 PGRIDRKIEF--PPPNEEARLD 337


>gi|126308659|ref|XP_001376943.1| PREDICTED: similar to mSUG1 protein [Monodelphis domestica]
          Length = 451

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 126 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 182

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 183 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 236

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 237 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 295

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 296 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 352

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 353 PGRIDRKIEF--PPPNEEARLD 372


>gi|118102836|ref|XP_425834.2| PREDICTED: similar to mSUG1 protein [Gallus gallus]
          Length = 406

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 81  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327


>gi|114669878|ref|XP_001149776.1| PREDICTED: similar to mSUG1 protein isoform 7 [Pan troglodytes]
 gi|119614675|gb|EAW94269.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
           CRA_a [Homo sapiens]
          Length = 383

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 58  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 114

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 115 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 168

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 169 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 227

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 228 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 284

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 285 PGRIDRKIEF--PPPNEEARLD 304


>gi|50604137|gb|AAH77223.1| Unknown (protein for MGC:79055) [Xenopus laevis]
          Length = 414

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 89  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 145

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 146 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 199

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 200 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 258

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 259 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 315

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 316 PGRIDRKIEF--PPPNEEARLD 335


>gi|326933955|ref|XP_003213063.1| PREDICTED: 26S protease regulatory subunit 8-like [Meleagris
           gallopavo]
          Length = 411

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 86  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 142

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 143 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 196

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 197 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 255

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 256 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 312

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 313 PGRIDRKIEF--PPPNEEARLD 332


>gi|54696318|gb|AAV38531.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic
           construct]
          Length = 407

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 81  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327


>gi|73965197|ref|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 3
           [Canis familiaris]
 gi|114669880|ref|XP_001149643.1| PREDICTED: similar to mSUG1 protein isoform 6 [Pan troglodytes]
          Length = 327

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 2   DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 58

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 59  MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 112

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 113 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 171

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 172 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 228

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 229 PGRIDRKIEF--PPPNEEARLD 248


>gi|51230594|ref|NP_001003740.1| 26S protease regulatory subunit 8 [Danio rerio]
 gi|50603847|gb|AAH78375.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Danio
           rerio]
 gi|182891110|gb|AAI65834.1| Psmc5 protein [Danio rerio]
          Length = 406

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 81  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327


>gi|47219715|emb|CAG12637.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 406

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 81  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327


>gi|12846001|dbj|BAB26990.1| unnamed protein product [Mus musculus]
          Length = 406

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 81  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327


>gi|2564007|dbj|BAA22935.1| proteasome p45/SUG [Rattus norvegicus]
          Length = 374

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 49  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 105

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 106 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 159

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 160 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 218

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 219 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 275

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 276 PGRIDRKIEF--PPPNEEARLD 295


>gi|7110703|ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus]
 gi|13592141|ref|NP_112411.1| 26S protease regulatory subunit 8 [Rattus norvegicus]
 gi|24497435|ref|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Homo sapiens]
 gi|27806101|ref|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus]
 gi|47522792|ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa]
 gi|73965193|ref|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1
           [Canis familiaris]
 gi|114669860|ref|XP_001150043.1| PREDICTED: 26S protease regulatory subunit 8 isoform 10 [Pan
           troglodytes]
 gi|114669862|ref|XP_001150100.1| PREDICTED: similar to mSUG1 protein isoform 11 [Pan troglodytes]
 gi|149723381|ref|XP_001500958.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 5
           [Equus caballus]
 gi|291406361|ref|XP_002719523.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase 5-like
           [Oryctolagus cuniculus]
 gi|296201787|ref|XP_002806873.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit
           8-like [Callithrix jacchus]
 gi|297273391|ref|XP_001108909.2| PREDICTED: 26S protease regulatory subunit 8-like isoform 1 [Macaca
           mulatta]
 gi|301778301|ref|XP_002924560.1| PREDICTED: 26S protease regulatory subunit 8-like [Ailuropoda
           melanoleuca]
 gi|332243114|ref|XP_003270727.1| PREDICTED: 26S protease regulatory subunit 8 [Nomascus leucogenys]
 gi|49065781|sp|P62197|PRS8_PIG RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName:
           Full=Proteasome subunit p45; AltName: Full=Tat-binding
           protein homolog 10; Short=TBP10; AltName: Full=p45/SUG
 gi|49065782|sp|P62198|PRS8_RAT RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName:
           Full=Proteasome subunit p45; AltName: Full=Thyroid
           hormone receptor-interacting protein 1; Short=TRIP1;
           AltName: Full=p45/SUG
 gi|49065819|sp|P62195|PRS8_HUMAN RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName:
           Full=Proteasome subunit p45; AltName: Full=Thyroid
           hormone receptor-interacting protein 1; Short=TRIP1;
           AltName: Full=p45/SUG
 gi|49065820|sp|P62196|PRS8_MOUSE RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName:
           Full=Proteasome subunit p45; AltName: Full=p45/SUG;
           Short=mSUG1
 gi|68630545|sp|P62194|PRS8_BOVIN RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT6; AltName:
           Full=Proteasome 26S subunit ATPase 5; AltName:
           Full=Proteasome subunit p45; AltName: Full=p45/SUG
 gi|1165125|emb|CAA90961.1| mSUG1 protein [Mus musculus]
 gi|1262433|emb|CAA61863.1| 26S protease subunit [Sus scrofa]
 gi|1395177|dbj|BAA11938.1| proteasomal ATPase (rat SUG1) [Rattus norvegicus]
 gi|2564003|dbj|BAA22933.1| proteasome p45/SUG [Rattus norvegicus]
 gi|3193258|gb|AAC19266.1| proteasome subunit SUG1 [Bos taurus]
 gi|12804959|gb|AAH01932.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Homo
           sapiens]
 gi|32425744|gb|AAH02367.3| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Homo
           sapiens]
 gi|37231718|gb|AAH58462.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Rattus
           norvegicus]
 gi|74183188|dbj|BAE22539.1| unnamed protein product [Mus musculus]
 gi|74216976|dbj|BAE26599.1| unnamed protein product [Mus musculus]
 gi|90075232|dbj|BAE87296.1| unnamed protein product [Macaca fascicularis]
 gi|119614678|gb|EAW94272.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
           CRA_c [Homo sapiens]
 gi|123242266|emb|CAM23783.1| protease (prosome, macropain) 26S subunit, ATPase 5 [Mus musculus]
 gi|123982762|gb|ABM83122.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic
           construct]
 gi|123997431|gb|ABM86317.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic
           construct]
 gi|148702335|gb|EDL34282.1| protease (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_a
           [Mus musculus]
 gi|148877455|gb|AAI46196.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Bos taurus]
 gi|158257188|dbj|BAF84567.1| unnamed protein product [Homo sapiens]
 gi|208967154|dbj|BAG73591.1| proteasome (prosome, macropain) 26S subunit ATPase 5 [synthetic
           construct]
 gi|296476226|gb|DAA18341.1| 26S protease regulatory subunit 8 [Bos taurus]
          Length = 406

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 81  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327


>gi|312596881|ref|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 [Homo sapiens]
 gi|114669874|ref|XP_001149920.1| PREDICTED: similar to mSUG1 protein isoform 9 [Pan troglodytes]
 gi|297273393|ref|XP_002800611.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 3 [Macaca
           mulatta]
 gi|332848822|ref|XP_001149845.2| PREDICTED: 26S protease regulatory subunit 8 isoform 8 [Pan
           troglodytes]
 gi|1262435|emb|CAA61864.1| put. 26S protease subunit [Sus scrofa]
 gi|119614676|gb|EAW94270.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
           CRA_b [Homo sapiens]
 gi|119614677|gb|EAW94271.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
           CRA_b [Homo sapiens]
 gi|158254952|dbj|BAF83447.1| unnamed protein product [Homo sapiens]
          Length = 398

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 73  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 129

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 130 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 183

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 184 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 242

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 243 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 299

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 300 PGRIDRKIEF--PPPNEEARLD 319


>gi|976227|dbj|BAA07919.1| 26S proteasome subunit p45 [Homo sapiens]
 gi|1096205|prf||2111282A 26S proteasome
          Length = 406

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 81  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327


>gi|312372820|gb|EFR20697.1| hypothetical protein AND_19657 [Anopheles darlingi]
          Length = 389

 Score = 44.9 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 36/285 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 45  QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 96

Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
               D+ D +    +  ++    L      K    + +      P    E        + 
Sbjct: 97  DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 156

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
                +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 157 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 206

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD   
Sbjct: 207 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 266

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY 627
            R    L       E+  +    +  N+   +   D A  R  R 
Sbjct: 267 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRI 308


>gi|283975430|gb|ADB55714.1| non-structural protein [Aleutian mink disease virus]
          Length = 641

 Score = 44.9 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 43/154 (27%), Gaps = 20/154 (12%)

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
             F E E  +  L  +     +E+   Y  + +   L      +  I   G GG+GK+ L
Sbjct: 385 VKFNEEEDDKPLLTTIQDMGLNEQ---YLKKVLCTILTKQGGKRGCIWFYGPGGTGKTLL 441

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            +LI  A  N  ++                  N          I+   E           
Sbjct: 442 ASLICKATVNYGMVTT-------------SNPNFPRTDCGNRNIIWAEECGNLGNWVED- 487

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
            K +TGG  +          S         I  N
Sbjct: 488 FKAITGGGDIKVDTKNKQPQS---IKGCVVITSN 518


>gi|225712564|gb|ACO12128.1| 26S protease regulatory subunit 8 [Lepeophtheirus salmonis]
 gi|290462495|gb|ADD24295.1| 26S protease regulatory subunit 8 [Lepeophtheirus salmonis]
 gi|290561817|gb|ADD38306.1| 26S protease regulatory subunit 8 [Lepeophtheirus salmonis]
          Length = 410

 Score = 44.9 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 102/354 (28%), Gaps = 47/354 (13%)

Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN-FLVSMKEDVFDLS 370
           N  + S+         ++    Y   K      ++         +      +   V  L 
Sbjct: 4   NPRLISMETDEVVKRPSEGLRTYYVTKIEELGQTVANKNQNLRRLEAQRNELNAKVRMLR 63

Query: 371 EEPEDNNKNSKSPRFWFNTDYRRQNVEE----NSKAKSTAQSLEAGSIFSITSDLLDSSS 426
           EE +   +             +++ + +            ++++ G I       L + S
Sbjct: 64  EELQLLQEQGSYVGEVVKAMDKKKVLVKVHPEGKFVVDIDKNIDIGEITPNCRVALRNDS 123

Query: 427 RFLG--EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484
             L     + +              + +      P    E        +      +EV++
Sbjct: 124 YALHKILPNKV-----------DPLVSLMMVEKVPDSTYEMVGGLDKQIKEI---KEVIE 169

Query: 485 Y------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
                      +G+A        + + + G  G+GK+ L   + +       I    S++
Sbjct: 170 LPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSEL 222

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL-----NY 593
           +Q    E  +    L  +       I   +E D I +A+I+  +GG     +        
Sbjct: 223 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARIESGSGGGDSEVQRTMLELLN 282

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
                E+  +    +  N+   +   D A  R  R    I F  P  N +A   
Sbjct: 283 QLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 331


>gi|56758410|gb|AAW27345.1| SJCHGC09272 protein [Schistosoma japonicum]
          Length = 430

 Score = 44.9 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 103/342 (30%), Gaps = 50/342 (14%)

Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS----KSPRFWFNTDY 391
           K   + +I++  +  +          +   V  L EE +   +      +  +       
Sbjct: 51  KIDEHQFIYTEKVLNLRRLEAQ-RNELNAKVRMLREELQLLQEQGSFVGEVIKAMDKKKV 109

Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
             +   E        +++E   I       L S S  L             K+ P+K   
Sbjct: 110 LVKVQPEGKYVVDIDKNIEMSQISPNCRVALRSDSYIL------------HKILPSKVDP 157

Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIH 505
           +        V     +    L     E +EV++           +G+A        + + 
Sbjct: 158 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVL 211

Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
           + G  G+GK+ L   + +       I    S  +Q    E  +    L  +       I 
Sbjct: 212 LYGPPGTGKTLLARAVAH-HTECTFIRVSGSRAVQKFIGEGARMVRELFVMAREHAPSII 270

Query: 566 ETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
             +E D I + +++  TGGD    R    L       E   +    +  N+   +   D 
Sbjct: 271 FMDEVDSIGSTRLESGTGGDSEVQRTMLELLNQLDGFEPKQNIKVIMATNRIDIL---DS 327

Query: 622 AWWR--RY-IVIPFDKP----------IANRDASFAQKLETK 650
           A  R  R    I F  P          I +R  +  + ++ +
Sbjct: 328 ALLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLR 369


>gi|170742124|ref|YP_001770779.1| hypothetical protein M446_3980 [Methylobacterium sp. 4-46]
 gi|168196398|gb|ACA18345.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 728

 Score = 44.9 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/319 (10%), Positives = 84/319 (26%), Gaps = 47/319 (14%)

Query: 4   MQWKEQAKQAIHNGFKLIPLR---LGDKRPQ-RLGKWEEQLLSSEKIDKLPACGFGFVCG 59
           + WK +  +        +P R      K        W +   +   ++   A G G+   
Sbjct: 25  LVWKWEPNK--KGKSTKVPYRADAPNVKGSSTDRRTWSDYATAVRAVEAGRADGIGYAL- 81

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILH----GTPIVRIGQKPKILIPFRMNKEGIKK 115
                + AFD+D+  ++  +        L         V    +   +I   +  E  ++
Sbjct: 82  -HGGEVAAFDLDNCRDRETHEIAPWALKLLERAQSYAEVTPSGEGIRIIGRAIGDEVHRR 140

Query: 116 KKTTESTQGHLD-ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
           ++   +T G ++     G++                        + D P    +  E + 
Sbjct: 141 QRVPMTTDGAVETFRRAGRFITVTGDV-----------------LLDAPEALAQLDEVID 183

Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
           +    +       +   +  +       ++ T +      +        G +D     + 
Sbjct: 184 ETVAALDE---AKRAEKVAERGACREAEQEVTRQSKGERTADGAGSQIYGGYDSLPRELY 240

Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR-----STFTS 289
            +     G+          S + + +       K   +  ++I              +  
Sbjct: 241 KLIRFGPGAG---------SDRSAAFHHAVCWLKDYGWSVDKIEALMAAHPRGVAEKYEG 291

Query: 290 LFYHHGKLIPKGLLASRFS 308
                 +       A R +
Sbjct: 292 RLRAEIERSWDKGDAPRQT 310


>gi|12958170|gb|AAK09273.1|AF293960_3 putative replication protein E1 [Human papillomavirus type 84]
          Length = 650

 Score = 44.9 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 19/178 (10%)

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
           F   +   L G  K    +   G   +GKS     +    G   +    ++         
Sbjct: 454 FMTALKQFLKGTPKKG-CLVFYGPSDTGKSLFCMSLINYLGGTVISFVNST--------- 503

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
              ++  L  L  ++I ++ +      I     ++ +  G+ ++    + N         
Sbjct: 504 ---SHFWLSPLADAKIGLLDDATYQCWIYMDTYLRSVLDGNVISVDRKHKNLVQLKCPP- 559

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEAKK--WF 659
              I  N +    +       R ++ PF +K   + +     +L  +      +  W 
Sbjct: 560 -LLITTNINPETDDTFKYLRSRMVIFPFLNKCPLDANGDPVYQLNNENWKSFFRRSWA 616


>gi|9628279|ref|NP_042872.1| hypothetical protein [Aleutian mink disease virus]
 gi|1353227|sp|P24030|VNCS_ADVG RecName: Full=Non-capsid protein NS-1; AltName: Full=NCVP1;
           AltName: Full=Non-structural protein NS1
 gi|808725|gb|AAA66612.1| unknown protein [Aleutian mink disease virus]
          Length = 590

 Score = 44.9 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 97/358 (27%), Gaps = 59/358 (16%)

Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA------ 332
              + R+    ++   G   P      +    YNK +    +   F+Y  +         
Sbjct: 172 KDPEDRAKNLKVWIEDGPTKPYKYFNKQTKQDYNKPVH--LRDYTFIYLFNKDKINTDSM 229

Query: 333 -WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED--------NNKNSKSP 383
             Y    N   + +LT  +       +L     D+ D + + ED        +  +S + 
Sbjct: 230 DGYFAAGNGGIVDNLTNKERKTLRKMYLDEQSSDIMDANIDWEDGQDAPKVTDQTDSATT 289

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE------------ 431
           +   +  ++    +  SK +      +           LD+                   
Sbjct: 290 KTGTSLIWKSCATKVTSKKEVANPVQQPSKKLYSAQSTLDALFNVGCFTPEDMIIKQSDK 349

Query: 432 -------QDGILDLETGQKVKPTKELYITKSTGTP----FVEGEPSQEFLDLVSGYFESE 480
                   +G    +    +   +    T  T       F E E  +  L  +     +E
Sbjct: 350 YLELSLEPNGP--QKINTLLHMNQVKTSTMITAFDCIIKFNEEEDDKPLLATIKDMGLNE 407

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           +   Y  + +   L      +  I   G GG+GK+ L +LI  A  N  ++         
Sbjct: 408 Q---YLKKVLCTILTKQGGKRGCIWFYGPGGTGKTLLASLICKATVNYGMVTT------- 457

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                    N          I+   E            K +TGG  +          S
Sbjct: 458 ------SNPNFPWTDCGNRNIIWAEECGNFGNWVED-FKAITGGGDVKVDTKNKQPQS 508


>gi|237643631|ref|YP_002884321.1| DNA helicase [Bombyx mandarina nucleopolyhedrovirus]
 gi|229358177|gb|ACQ57272.1| DNA helicase [Bombyx mandarina nucleopolyhedrovirus]
          Length = 1222

 Score = 44.9 bits (104), Expect = 0.059,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 111/362 (30%), Gaps = 39/362 (10%)

Query: 279  DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338
            D     +  + L +    LI         +     + F       F    +    Y    
Sbjct: 715  DMFGNDAELSKLIWM---LIFTNKTYVSTTLIRTNSEFVNQHGEFFFKEHNKIIQYLYQT 771

Query: 339  NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
             +   +   L         FL  +++DV    +      ++    +F+ +       +++
Sbjct: 772  IHKIEYVDMLMDKFNDKRLFLTELRDDVAREPDV--QFEESDNICKFYTHHTDALIILKK 829

Query: 399  NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
             +             I + ++D L +          I+ +      + +         G 
Sbjct: 830  YNVWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKMDLKEYSYNYLKKIVEGY 879

Query: 459  PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517
             +        F    +  F     +         +L +  +  ++ I++ G  GSGKS+ 
Sbjct: 880  LY--------FKRFTN--FNHANAI--MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSF 927

Query: 518  MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAA 576
              L+ Y                 +    +G++N        S++   +   NE  + + +
Sbjct: 928  FELLDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYVINELKQCSES 977

Query: 577  KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
              K+        ++        +  A++   IV NK L+V + DD    R++++  +   
Sbjct: 978  YFKKHADSSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKF 1037

Query: 637  AN 638
             +
Sbjct: 1038 VD 1039


>gi|452705|emb|CAA54349.1| NS-1 [Aleutian mink disease virus]
          Length = 641

 Score = 44.9 bits (104), Expect = 0.060,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 99/375 (26%), Gaps = 57/375 (15%)

Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA------ 332
              + R+    ++   G   P      +    YNK +    +   F+Y  +         
Sbjct: 172 KDPEDRAKNLKVWVEDGPTKPYKYFNKQTKQDYNKPVH--LRDYTFIYLFNKDKINTDSM 229

Query: 333 -WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED--------NNKNSKSP 383
             Y    N   + +LT  +       +L     D+ D + + ED        +  +S + 
Sbjct: 230 DGYFAAGNGGIVDNLTNKERKTLRKMYLDEQSSDIMDANIDWEDGQDAPKVTDQTDSATT 289

Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE------------ 431
           +   +  ++    +  SK +      +         + LD+                   
Sbjct: 290 KTGTSLIWKSCATKVTSKKEVANPVQQPSKKLYSAQNTLDALFNVGCFTPEDMIIKQSDK 349

Query: 432 -------QDG--ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
                   +G   ++         T  +         F E E  +  L  +     +E+ 
Sbjct: 350 YLELSLEPNGPQKINTLLHMNQVKTSTMMTAFDCIIKFNEEEDDKPLLATIKDMGLNEQ- 408

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
             Y  + +   L      +  I   G GG+GK+ L +LI  A  N  ++           
Sbjct: 409 --YLKKVLCTILTKQGGKRGCIWFYGPGGTGKTLLASLICKATVNYGMVTT--------- 457

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                  N          I+   E            K +TGG  +           +S  
Sbjct: 458 ----SNPNFPWTDCGNRNIIWAEECGNLGNWVED-FKAITGGGDVKVDTKNKQP--QSIK 510

Query: 603 SFTPFIVPNKHLFVR 617
                        V 
Sbjct: 511 GCVIVTSNTNITKVT 525


>gi|9630898|ref|NP_047495.1| DNA Helicase [Bombyx mori NPV]
 gi|3745917|gb|AAC63764.1| DNA Helicase [Bombyx mori NPV]
          Length = 1222

 Score = 44.9 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 45/362 (12%), Positives = 110/362 (30%), Gaps = 39/362 (10%)

Query: 279  DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338
            D     +  + L +    LI         +     + F       F    +    Y    
Sbjct: 715  DMFGNDAELSKLIWM---LIFTNKTYVSTTLIRTNSEFVNQHGEFFFKEHNKIIQYLYQT 771

Query: 339  NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
             +   +   L         FL  +++DV    +      ++    +F+ +       +++
Sbjct: 772  IHKIEYVDMLMDKFNDKRLFLTELRDDVAREPDV--QFEESDNICKFYTHHTDALIILKK 829

Query: 399  NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
             +             I + ++D L +          I+ +      + +         G 
Sbjct: 830  YNVWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKMDLKEYSYNYLKKIVEGY 879

Query: 459  PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517
             +        F    +    +             +L +  +  ++ I++ G  GSGKS+ 
Sbjct: 880  LY--------FKRFTNFNHANA----IMLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSF 927

Query: 518  MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAA 576
              L+ Y                 +    +G++N        S++   +   NE  + + +
Sbjct: 928  FELLDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYVINELKQCSES 977

Query: 577  KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
              K+        ++        +  A++   IV NK L+V + DD    R++++  +   
Sbjct: 978  YFKKHADSSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKF 1037

Query: 637  AN 638
             +
Sbjct: 1038 VD 1039


>gi|295398108|ref|ZP_06808157.1| DNA primase domain protein [Aerococcus viridans ATCC 11563]
 gi|294973627|gb|EFG49405.1| DNA primase domain protein [Aerococcus viridans ATCC 11563]
          Length = 440

 Score = 44.9 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 81/278 (29%), Gaps = 35/278 (12%)

Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD--LETGQKVKPTKELYIT 453
            +E ++  +  +              +D        Q+ I D  +   Q           
Sbjct: 55  FDEFARIPTINKRPIDEMHLKSLRVKIDDEYNLKFVQNDIEDVVMTIAQDKPYHPIKEFI 114

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCV----GMALLGGNKAQRFIHIRGV 509
           ++     V+   S  F+D + G  + E   +   R +          G K +    + G 
Sbjct: 115 EAKPWDGVKRVES-LFIDYL-GATDDEYNREVAKRWLCGGIARIYYPGIKFEIVPILEGS 172

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GKSTL        G  +V                G+       L+G+ IV +SE   
Sbjct: 173 QGAGKSTLAG---KLAGKYFVDTL----------KGMGQHKDDNQLLIGAWIVELSELAS 219

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
             +      K          RL Y    S  P + T     N   ++ +      RR+  
Sbjct: 220 LRKSEIENTKGFLSSSEDKVRLPYEKNVSTLPRTNTFIGTTNATEYLTDFTG--NRRFFP 277

Query: 630 IPFD------KPIANRDASFAQ------KLETKYTLEA 655
           IP +       P    D +  Q       L  +   + 
Sbjct: 278 IPLEDDSATKSPFDMTDDTIQQIWAEAKHLYFEEKAKI 315


>gi|120610295|ref|YP_969973.1| virulence-associated E family protein [Acidovorax citrulli AAC00-1]
 gi|120588759|gb|ABM32199.1| virulence-associated E family protein [Acidovorax citrulli AAC00-1]
          Length = 892

 Score = 44.9 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 28/187 (14%)

Query: 458 TPFVEGEPSQEFLDLVSGYFES------EEVMDYFTRCVGMALLGGN--------KAQRF 503
               + +        +               + Y        L+G          K    
Sbjct: 539 VKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYS 598

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
           + + G GG GKSTL+N +               D   +   + G    S  ++ G     
Sbjct: 599 VVLEGTGGIGKSTLINTLVGL------------DFFSDTHFDIGTGKDSYEQIAGIVAYE 646

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
           +SE       +A  +K          R  YG    + P     +   NK  ++ +     
Sbjct: 647 LSEMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQYLFDITG-- 704

Query: 624 WRRYIVI 630
            RR+  +
Sbjct: 705 NRRFWPV 711


>gi|45361563|ref|NP_989358.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Xenopus
           (Silurana) tropicalis]
 gi|39850038|gb|AAH64153.1| hypothetical protein MGC75584 [Xenopus (Silurana) tropicalis]
          Length = 414

 Score = 44.9 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 89  DKKKVLVKVHPEGKFVVDIDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 145

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 146 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 199

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 200 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 258

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 259 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 315

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 316 PGRIDRKIEF--PPPNEEARLD 335


>gi|299472009|emb|CBN80092.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 398

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 84/281 (29%), Gaps = 30/281 (10%)

Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
             +      +      +  Y  + V+   K K   +    G         +D +      
Sbjct: 45  NAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNK---CT 101

Query: 432 QDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY-- 485
            +  + L     V      TK   +        V          L     E +EV++   
Sbjct: 102 PNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPI 161

Query: 486 ----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
                   +G+A        + + + G  G+GK+ L   + +   +   I    S+++Q 
Sbjct: 162 KHPELFESLGVA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQK 214

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTY 597
              E  +    L  +       I   +E D I +++++   GGD    R    L      
Sbjct: 215 YIGEGSRMVRELFVMAREAAPSIIFMDEIDSIGSSRVEGSEGGDSEVQRTMLELLNQLDG 274

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKP 635
            E   +    +  N+   +   D A  R  R    I F  P
Sbjct: 275 FEPTQNIKVVMATNRIDIL---DPALLRPGRIDRKIEFPHP 312


>gi|91217110|ref|ZP_01254072.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC
           700755]
 gi|91184710|gb|EAS71091.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC
           700755]
          Length = 424

 Score = 44.5 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 22/168 (13%)

Query: 28  KRPQRLGKWEEQLLSSEKIDK-----LPACGFGFVCGVGEQPLYAFDIDSKDEK--TANT 80
           K P    +W     S ++ID       P    G         L   DID  ++       
Sbjct: 38  KTPSH--EWTNLFDSKQEIDDLNRFNWPNS-VGIGTFTYWSDLVVIDIDGCNDINFLKQI 94

Query: 81  FKDTFEILHGTPIVRIGQKPKILIPFRMNK----------EGIKKKKTTESTQGHLDILG 130
            +          +V+ G K    I +  ++               K   E     ++ L 
Sbjct: 95  LRQLNLPSDYEWVVQSGSKNGFHIYYLGDQIDECGEDDVVSAFPPKSQFERYVDKIEFLW 154

Query: 131 CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
              + V       +  +Y++          +  + +E   +++ KF  
Sbjct: 155 R-THTVLPPSVHGSGNKYSFLNNEFPKNKPEE-IDTETIYDFIDKFLD 200


>gi|256352178|ref|YP_003104799.1| E1 [Francolinus leucoscepus papillomavirus 1]
 gi|161334761|gb|ABX61087.1| E1 [Francolinus leucoscepus papillomavirus 1]
          Length = 658

 Score = 44.5 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 81/303 (26%), Gaps = 50/303 (16%)

Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
                + M+ L   + ++  + +   DNN + +    +        ++      KS +Q+
Sbjct: 336 WCRDITGMSQLSGDQFELSKMIQWALDNNYSDEGAISFHYAIQAETDMNAQLWLKSNSQA 395

Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
                  ++                 +   + GQ      E +I           +   +
Sbjct: 396 RFVRDCAAM-----------------VRHYKRGQLHAMDMEEFIASRVKHFADASDEGWK 438

Query: 469 ----FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
               FL               F + +   L G  K        GV  SGKS         
Sbjct: 439 PILVFLRFQHVPLPD------FLQMLRYWLKGRPKKSTIAI-VGVPDSGKSMF------- 484

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET--NENDEINAAKIKQMT 582
                 ++       +       K++  L  L  ++  +I +      D ++   ++   
Sbjct: 485 -----CMSLNQFLDGRVLSFSNSKSHFWLQPLSEAKTALIDDLTRPAWDYLDI-YLRNAL 538

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA-----WWRRYIVIPFDKPIA 637
            G+ ++    +              +  N      +            R   I F +PI 
Sbjct: 539 DGNPISIDCKHRAPMQIKCPP--LLLTSNVDPRAPDSTGCAGYKYLTNRIAFITFGRPIP 596

Query: 638 NRD 640
            RD
Sbjct: 597 LRD 599


>gi|225021042|ref|ZP_03710234.1| hypothetical protein CORMATOL_01054 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946182|gb|EEG27391.1| hypothetical protein CORMATOL_01054 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 150

 Score = 44.5 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 18/117 (15%)

Query: 22  PLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS---KDEKTA 78
           P+      P    K E    + + +   P    G + G     L   D+D    +  K A
Sbjct: 15  PIAP-TGSPASTTKPETW-TTHDAVQDGPH---GVMLG---GGLACIDLDHCISRRGKVA 66

Query: 79  NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135
           +   +    + G  + R   + + L  F +  E           +G ++I    ++ 
Sbjct: 67  DWAIEIIRAVPGAVVERSVSR-RGLHIFGLLPE------GPGRRRGCVEIYSRARFI 116


>gi|313159248|gb|EFR58617.1| VirE N-terminal domain protein [Alistipes sp. HGB5]
          Length = 314

 Score = 44.5 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 50/215 (23%), Gaps = 30/215 (13%)

Query: 64  PLYAFDIDSKD-----EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118
                DID KD      +  +  +   +         +      L               
Sbjct: 99  GFICIDIDHKDNGVFGPEWFDKKRLVAKTFDSLLCASMSISGNGLYLIFRIAHPDMHLA- 157

Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
            +      +I                   Y  T         D   L     +  + +  
Sbjct: 158 -QFDALVREI-------------------YEKTGLVADQGCCDVCRLRGASYDA-YPYIN 196

Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--GSHDEWIPVVMAV 236
               P     K             ++  + ++   +    EE  +    + +W  +  A+
Sbjct: 197 PHAKPYRGVLKERTARAKVRTAREKKLLDEKVYKLIQKIREEKKDITDDYHDWYCIGCAL 256

Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
            HE  G  +G  +    S     Y   + + ++  
Sbjct: 257 AHEY-GKEEGLRLFHLVSMHSKKYYPTDCDEQFAK 290


>gi|119964606|ref|YP_950802.1| DNA helicase [Maruca vitrata MNPV]
 gi|119514449|gb|ABL76024.1| DNA helicase [Maruca vitrata MNPV]
          Length = 1224

 Score = 44.5 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 40/359 (11%), Positives = 109/359 (30%), Gaps = 41/359 (11%)

Query: 283  KRSTFTSLFYHHGKLIPKGLLAS--RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
              +  + L +         +  +  R +  +            F    +    Y     +
Sbjct: 716  NDTELSELIWMLIFNNRTYVSTALIRTNSDFVNQ-----HGEFFFKEHNRIIQYLYRTIH 770

Query: 341  VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400
               +   L         FL  +++DV    +      ++    +F+ +     + +++ +
Sbjct: 771  KIEYVDVLMGKFNDKRLFLTELRDDVAREPDV--QFEESDSVSKFYTHHADTLKILKKYN 828

Query: 401  KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
                         I + ++D L +          I+ +      + +         G  +
Sbjct: 829  VWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKLDLKEYSYNYLKKIVEGYLY 878

Query: 461  VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
                    F    +    +  +            +  +  ++ +++ G  GSGKS+   L
Sbjct: 879  --------FKRFTNFNHANANM---LMHFAASLAIPVDYGKKAVYMPGAPGSGKSSFFEL 927

Query: 521  IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAAKIK 579
            + Y                 +    +G++N        S++   +   NE  + + +  K
Sbjct: 928  LDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYTINELKQCSESYFK 977

Query: 580  QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
            +        ++        +  A++   IV NK L+V + DD    R++++  +    +
Sbjct: 978  KHADSSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1036


>gi|283456314|ref|YP_003360878.1| bifunctional DNA primase/polymerase [Bifidobacterium dentium Bd1]
 gi|283102948|gb|ADB10054.1| bifunctional DNA primase/polymerase [Bifidobacterium dentium Bd1]
          Length = 942

 Score = 44.5 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 10/155 (6%)

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
            S + M     C G  ++  +  ++   + G GG+GKS +   +   +G      A    
Sbjct: 274 GSADAMRNLMLCWGAPIM-SSHPEKLYWLSGQGGTGKSQMSAALVRLYG---GTTASVEL 329

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGG-DCMTARLNYGN 595
           + +   P +  A   +  L  + + +  E       +    +K +  G    + R    +
Sbjct: 330 LAK---PGSMSAENLMYNLQKANVGLFDEVGVKHFDDYWPAVKTLCTGLLPFSPRRRGED 386

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             ++     TP    N    +     A  RR  +I
Sbjct: 387 ASADLGCRVTPIFTANVLPPL-GQSSADQRRACII 420


>gi|171742604|ref|ZP_02918411.1| hypothetical protein BIFDEN_01717 [Bifidobacterium dentium ATCC
           27678]
 gi|171278218|gb|EDT45879.1| hypothetical protein BIFDEN_01717 [Bifidobacterium dentium ATCC
           27678]
          Length = 942

 Score = 44.5 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 10/155 (6%)

Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
            S + M     C G  ++  +  ++   + G GG+GKS +   +   +G      A    
Sbjct: 274 GSADAMRNLMLCWGAPIM-SSHPEKLYWLSGQGGTGKSQMSAALVRLYG---GTTASVEL 329

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGG-DCMTARLNYGN 595
           + +   P +  A   +  L  + + +  E       +    +K +  G    + R    +
Sbjct: 330 LAK---PGSMSAENLMYNLQKANVGLFDEVGVKHFDDYWPAVKTLCTGLLPFSPRRRGED 386

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             ++     TP    N    +     A  RR  +I
Sbjct: 387 ASADLGCRVTPIFTANVLPPL-GQSSADQRRACII 420


>gi|90078576|dbj|BAE88968.1| unnamed protein product [Macaca fascicularis]
          Length = 398

 Score = 44.5 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 81/261 (31%), Gaps = 32/261 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 73  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 129

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 130 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 183

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 184 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 242

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 243 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 299

Query: 626 --RY-IVIPFDKPIANRDASF 643
             R    I F  P  N +A  
Sbjct: 300 PGRIDRKIEF--PPPNEEARL 318


>gi|41057570|ref|NP_958099.1| NS1 [Mythimna loreyi densovirus]
 gi|39726203|gb|AAR30037.1| NS1 [Mythimna loreyi densovirus]
          Length = 545

 Score = 44.5 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 57/528 (10%), Positives = 144/528 (27%), Gaps = 53/528 (10%)

Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP-----LVKDKK 189
            VA        ++  W+       +      S+E+ +++ +  +++          +  K
Sbjct: 36  VVAAPS-----RKREWSHGGRGT-MASIAKESQENFQHMAEELEKMGGEFFGYVTGQSIK 89

Query: 190 SIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI 249
                 +            +    L  +G    NG    +      +H     S   +  
Sbjct: 90  PSSAYISDVIILRDIQLRDQCLDVLREYGRSRRNG-LFGFSEEGDHIHVIHDCSYTNRSC 148

Query: 250 ARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL------IPKGLL 303
              W  Q   +          T    +     K+   +    Y   +         +G  
Sbjct: 149 RDIWISQVKPFGSVQ-----KTGKPVKYIWEFKRTDWYDVFIYFFVRKRGERAIYIRGES 203

Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
               S+         +K+   + ++D   +Y+ ++    I      + + +        +
Sbjct: 204 GKIPSNDECVRWAREFKEREVVSSSDCTDYYECEQQEHKI-----SRRSDAGSTNGRLYE 258

Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
           +  +   +      K     R ++ +           +        +         D   
Sbjct: 259 KKAYSAGKFAYIRQKTKALLRKYYVSPISAICDVPEFRDDDLLCDPKNRDYIQAACDDFG 318

Query: 424 SSSRFLGEQDGILDL---ETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYFES 479
                +  ++ I DL   +     +     Y    +   +   E S     +L+      
Sbjct: 319 KDLNAMSLRE-IYDLLTEDCNFTDEKELNPYAQFISSMKYDNLEGSLNIIDELLKYQCND 377

Query: 480 EE--VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
           +E  ++++ T  V   L           +     +GK+   ++I                
Sbjct: 378 DEGLIVEFLTNLVN-VLDRRVPKLNAFLVMSPPSAGKNFFFDMIFGLL------------ 424

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-NT 596
           +   +  +A + N    +   ++ V++      +      IK M GGD  T R+    + 
Sbjct: 425 LSYGQLGQANRHNLFAFQEAPNKRVLLWNEPNYESSLTDTIKMMFGGDPYTVRVKNRMDA 484

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644
           + +        +  N   F+     A+  R I   ++     +D    
Sbjct: 485 HVKRTP--VIILTNNTVPFMYET--AFADRIIQYKWNAAPFLKDYELK 528


>gi|304383183|ref|ZP_07365656.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304335654|gb|EFM01911.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 281

 Score = 44.5 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 58/191 (30%), Gaps = 24/191 (12%)

Query: 473 VSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
           +   F  + E+ MDY        L    K    + +     +GKS  +N +K  F     
Sbjct: 79  IRHIFGEQYELGMDYLQLLY---LQPVQKLPILLMVSEERNTGKSMFLNFLKAVF----- 130

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
            N    +  ++   +            G  ++++ E   N   ++ ++K ++        
Sbjct: 131 QNNVTFNTNEDFRSQFNS------DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVE 184

Query: 591 LNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLE 648
               +       A F           + +  +  +W R I       + + D  F QKL 
Sbjct: 185 AKGKDRDEISFFAKFVLCSNNESLPVIIDMGETRYWVRKI-----NRLESDDTDFLQKL- 238

Query: 649 TKYTLEAKKWF 659
                    + 
Sbjct: 239 KTEIPAFLYFL 249


>gi|4574723|gb|AAD24183.1|AF131950_3 putative replication protein E1 [Human papillomavirus - cand85]
          Length = 648

 Score = 44.5 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 56/193 (29%), Gaps = 22/193 (11%)

Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
            +G   +  +  +   F+  E + +  R     L G  K    I I G   +GKS     
Sbjct: 430 DDGGDWKPIVQFLR--FQGIEFITFL-RAFKDFLKGTPKKN-CIVIYGPANTGKS----- 480

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-EINAAKIK 579
                   + ++                ++  L  L  ++I ++ +            ++
Sbjct: 481 -------YFCMSLIQFLHGTVLSFVNSNSHFWLEPLTDTKIAMVDDATPTCWSYFDNYMR 533

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVP-NKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
               G+ ++    + +          P ++  N +    +       R  V  F      
Sbjct: 534 NALDGNPISIDRKHKHL---IQMKCPPMLITSNTNPATDDRWPYLRSRVTVFTFPHTFPF 590

Query: 638 NRDASFAQKLETK 650
           + + +    +  K
Sbjct: 591 DSNGNPVYDINDK 603


>gi|238018844|ref|ZP_04599270.1| hypothetical protein VEIDISOL_00704 [Veillonella dispar ATCC 17748]
 gi|237864610|gb|EEP65900.1| hypothetical protein VEIDISOL_00704 [Veillonella dispar ATCC 17748]
          Length = 804

 Score = 44.5 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 19/177 (10%)

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
             +    V   +  G K    I + G  G GKS ++  +   + N  +++ +  D     
Sbjct: 495 RKWMCGAVARVMDPGVKFDTAIVLYGSQGLGKSLILERLGRKWFNNSLVDIKTKD----- 549

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                    +L ++ GS IV ++E     + +    K          R  YG    E P 
Sbjct: 550 ---------ALEQIQGSWIVELAELAPTYKNDNEIDKAFISRTSDRFRSPYGRRTEEYPR 600

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
                   N  +F+++      RR+  I  DK   +R    +  L      +     
Sbjct: 601 QCVFAGSTNNLMFLKDRTG--NRRFWPITGDK---DRKTKHSWDLSKDEIDQLWAEA 652


>gi|148702336|gb|EDL34283.1| protease (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_b
           [Mus musculus]
          Length = 326

 Score = 44.5 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 29/231 (12%)

Query: 431 EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485
             +  + L             K   +        V     +    L     E +EV++  
Sbjct: 29  TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 88

Query: 486 -----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
                    +G+A        + + + G  G+GK+ L   + +   +   I    S+++Q
Sbjct: 89  VKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQ 141

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNT 596
               E  +    L  +       I   +E D I +++++  +GGD    R    L     
Sbjct: 142 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 201

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
             E+  +    +  N+   +   D A  R  R    I F  P  N +A   
Sbjct: 202 GFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 247


>gi|114669864|ref|XP_001149426.1| PREDICTED: similar to mSUG1 protein isoform 3 [Pan troglodytes]
          Length = 433

 Score = 44.5 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 29/231 (12%)

Query: 431 EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485
             +  + L             K   +        V     +    L     E +EV++  
Sbjct: 136 TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 195

Query: 486 -----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
                    +G+A        + + + G  G+GK+ L   + +   +   I    S+++Q
Sbjct: 196 VKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQ 248

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNT 596
               E  +    L  +       I   +E D I +++++  +GGD    R    L     
Sbjct: 249 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 308

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
             E+  +    +  N+   +   D A  R  R    I F  P  N +A   
Sbjct: 309 GFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 354


>gi|114669876|ref|XP_001149010.1| PREDICTED: similar to mSUG1 protein isoform 1 [Pan troglodytes]
          Length = 425

 Score = 44.5 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 29/231 (12%)

Query: 431 EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485
             +  + L             K   +        V     +    L     E +EV++  
Sbjct: 128 TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 187

Query: 486 -----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
                    +G+A        + + + G  G+GK+ L   + +   +   I    S+++Q
Sbjct: 188 VKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQ 240

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNT 596
               E  +    L  +       I   +E D I +++++  +GGD    R    L     
Sbjct: 241 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 300

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
             E+  +    +  N+   +   D A  R  R    I F  P  N +A   
Sbjct: 301 GFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 346


>gi|114669870|ref|XP_001149504.1| PREDICTED: similar to mSUG1 protein isoform 4 [Pan troglodytes]
          Length = 329

 Score = 44.5 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 29/231 (12%)

Query: 431 EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485
             +  + L             K   +        V     +    L     E +EV++  
Sbjct: 32  TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 91

Query: 486 -----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
                    +G+A        + + + G  G+GK+ L   + +   +   I    S+++Q
Sbjct: 92  VKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQ 144

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNT 596
               E  +    L  +       I   +E D I +++++  +GGD    R    L     
Sbjct: 145 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 204

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
             E+  +    +  N+   +   D A  R  R    I F  P  N +A   
Sbjct: 205 GFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 250


>gi|13278504|gb|AAH04052.1| Psmc5 protein [Mus musculus]
          Length = 306

 Score = 44.5 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 29/231 (12%)

Query: 431 EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485
             +  + L             K   +        V     +    L     E +EV++  
Sbjct: 9   TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 68

Query: 486 -----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
                    +G+A        + + + G  G+GK+ L   + +   +   I    S+++Q
Sbjct: 69  VKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQ 121

Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNT 596
               E  +    L  +       I   +E D I +++++  +GGD    R    L     
Sbjct: 122 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 181

Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
             E+  +    +  N+   +   D A  R  R    I F  P  N +A   
Sbjct: 182 GFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 227


>gi|297273395|ref|XP_002800612.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 4 [Macaca
           mulatta]
          Length = 416

 Score = 44.5 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 91  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 147

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 148 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 201

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 202 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 260

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 261 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 317

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 318 PGRIDRKIEF--PPPNEEARLD 337


>gi|293982|gb|AAA67907.1| helicase [Autographa californica nucleopolyhedrovirus]
          Length = 1221

 Score = 44.5 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 111/362 (30%), Gaps = 39/362 (10%)

Query: 279  DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338
            D     +  + L +    LI         +     + F       F    +    Y    
Sbjct: 714  DMFGNDAELSELIWM---LIFTNKTYVSTTLIRTNSEFVNQHGEFFSKEHNKIIQYLYRT 770

Query: 339  NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
             +   +   L         FL  +++DV    +      ++    +F+ +       +++
Sbjct: 771  IHKIEYVDMLMDKFNDKRLFLTELRDDVAREPDV--QFEESDNISKFYTHHADALMILKK 828

Query: 399  NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
             +             I + ++D L +          I+ +      + +         G 
Sbjct: 829  YNVWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKVDLKEYSYNYLKKIVEGY 878

Query: 459  PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517
             +        F    +  F     +         +L +  +  ++ I++ G  GSGKS+ 
Sbjct: 879  LY--------FKRFTN--FNHANAI--MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSF 926

Query: 518  MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAA 576
              L+ Y                 +    +G++N        S++   +   NE  + + +
Sbjct: 927  FELLDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYTINELKQCSES 976

Query: 577  KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
              K+        ++        +  A++   IV NK L+V + DD    R++++  +   
Sbjct: 977  YFKKHADSSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKF 1036

Query: 637  AN 638
             +
Sbjct: 1037 VD 1038


>gi|262342361|gb|ACY54681.1| NS1 [Aleutian mink disease virus]
          Length = 641

 Score = 44.5 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 43/154 (27%), Gaps = 20/154 (12%)

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
             F E E  +  L  +     +E+   Y  + +   L      +  +   G GG+GK+ L
Sbjct: 385 VKFNEEEDDKPLLTTIKDMGLNEQ---YLKKVLCTILTKQGGKRGCLWFYGPGGTGKTLL 441

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            +LI  +  N  ++                  N          I+   E           
Sbjct: 442 ASLICKSVVNYGMVTT-------------SNPNFPWTDCGNRNIIWAEECGNFGNWVED- 487

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
            K +TGG  +          S         +  N
Sbjct: 488 FKAITGGGDVKVDTKNKQPQS---IKGCVIVTSN 518


>gi|9627838|ref|NP_054125.1| helicase [Autographa californica nucleopolyhedrovirus]
 gi|1174931|sp|P24307|V143_NPVAC RecName: Full=ATP-dependent DNA helicase P143
 gi|559164|gb|AAA66725.1| helicase [Autographa californica nucleopolyhedrovirus]
          Length = 1221

 Score = 44.5 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 46/362 (12%), Positives = 111/362 (30%), Gaps = 39/362 (10%)

Query: 279  DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338
            D     +  + L +    LI         +     + F       F    +    Y    
Sbjct: 714  DMFGNDAELSELIWM---LIFTNKTYVSTTLIRTNSEFVNQHGEFFSKEHNKIIQYLYRT 770

Query: 339  NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
             +   +   L         FL  +++DV    +      ++    +F+ +       +++
Sbjct: 771  IHKIEYVDMLMDKFNDKRLFLTELRDDVAREPDV--QFEESDNISKFYTHHADALMILKK 828

Query: 399  NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
             +             I + ++D L +          I+ +      + +         G 
Sbjct: 829  YNVWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKVDLKEYSYNYLKKIVEGY 878

Query: 459  PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517
             +        F    +  F     +         +L +  +  ++ I++ G  GSGKS+ 
Sbjct: 879  LY--------FKRFTN--FNHANAI--MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSF 926

Query: 518  MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAA 576
              L+ Y                 +    +G++N        S++   +   NE  + + +
Sbjct: 927  FELLDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYTINELKQCSES 976

Query: 577  KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
              K+        ++        +  A++   IV NK L+V + DD    R++++  +   
Sbjct: 977  YFKKHADSSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKF 1036

Query: 637  AN 638
             +
Sbjct: 1037 VD 1038


>gi|300941012|ref|ZP_07155533.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 21-1]
 gi|300454227|gb|EFK17720.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 21-1]
          Length = 177

 Score = 44.5 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 43/170 (25%), Gaps = 41/170 (24%)

Query: 619 PDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
                 RR ++I F + IA   RD     K+         +  ++              P
Sbjct: 1   RGGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVRHLMQ----------KFSDP 49

Query: 677 EVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESHSLA 715
            +     + +         ++  D    +I    +                       L 
Sbjct: 50  MLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTSGMYMGNASIIPRNYRKYLY 108

Query: 716 KSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIKREKIEKEWK 761
            +Y  Y E      R  +S +   L     LK+ G     +  K   +  
Sbjct: 109 HAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKRHTKQGIQTN 156


>gi|39939000|ref|NP_950766.1| hypothetical protein PAM_514 [Onion yellows phytoplasma OY-M]
 gi|39722109|dbj|BAD04599.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M]
          Length = 596

 Score = 44.5 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 84/283 (29%), Gaps = 36/283 (12%)

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
                +    ++++ +F L++       N K           R N  E    K       
Sbjct: 155 KEKDQLQTQENLQQQIFQLNQALNYVEANQKRIEELKTQKEYRNNQTELKNFKD------ 208

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
                 +T        +       +  L+  + +  TK+    K     +      +E  
Sbjct: 209 --FQLFLTDQKFAFEKQKKNLTIQLNHLKENKPLPHTKKQVTFK---DVYGMETEKEELE 263

Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
           DL++ +  ++ ++++                +   + G  G+GK+ L   IK   G   V
Sbjct: 264 DLLTYFKTNQTLINFDQ-----------VRPKGYLLYGPPGTGKTFL---IKALCGEANV 309

Query: 531 INAEASDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGG 584
                    + R    G+    +        +    I+ I E    +  N + I    G 
Sbjct: 310 HFINLIP-AKFRQKYIGEGEKEVEKVWQEAEIHDKTIIFIDEIEGLENRNDSNI-SSGGV 367

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
           + +   L+  + ++ S          N    +   D A   R+
Sbjct: 368 NVINTLLDKLDGFNSSNKKIVLMGATNNLHKI---DTALRSRF 407


>gi|24651451|ref|NP_651811.1| Rpt6R [Drosophila melanogaster]
 gi|7301963|gb|AAF57069.1| Rpt6R [Drosophila melanogaster]
 gi|21430822|gb|AAM51089.1| SD17676p [Drosophila melanogaster]
 gi|220959236|gb|ACL92161.1| CG2241-PA [synthetic construct]
          Length = 399

 Score = 44.5 bits (103), Expect = 0.077,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 86/313 (27%), Gaps = 48/313 (15%)

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
               E +      +             N++     +      E GS  +     +D +  
Sbjct: 20  QKISELQFTVNERQKNLLRLQAQRNELNLKVRLLREELQLLQEQGSYIAEVVKPMDKNKV 79

Query: 428 FLGE-QDGILDLETGQKVK------------PTKELYITKSTGTPFVEGEPSQEFLD--- 471
            +    +G   ++  + +               +   + K                    
Sbjct: 80  LVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLVSLMLVEKVPD 139

Query: 472 --------LVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
                   L     E +EV++           +G          + + + G  G+GK+ L
Sbjct: 140 STYEMVGGLDKQIQEIKEVIELPVKHPELFDALG------ITQPKGVLLYGPPGTGKTLL 193

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
              + +       I    S+++Q    E  +    L  +       I   +E D I +A+
Sbjct: 194 ARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 252

Query: 578 IKQMTGGDCMT---ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIP 631
           ++  TG   +      L       E+  +    +  N+   +   D A  R  R    I 
Sbjct: 253 LETGTGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVL---DQALLRPGRIDRKIE 309

Query: 632 FDKPIANRDASFA 644
           F  P  N +A   
Sbjct: 310 F--PPPNEEARLD 320


>gi|47220534|emb|CAG05560.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 316

 Score = 44.5 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
           WI +  +  +        +   Y  Y +   N     +S       +K       +K  +
Sbjct: 59  WIRNHLEEHQETSLPKQEVYDEYKSYCD---NLGYNPLSAADFGKIMKN--VFPTMKARR 113

Query: 756 IEKEWKSKRIIKGLKLKPAF 775
           +    KSK    GL+ K AF
Sbjct: 114 LGMRGKSKYPF-GLR-KKAF 131


>gi|194744279|ref|XP_001954622.1| GF16654 [Drosophila ananassae]
 gi|190627659|gb|EDV43183.1| GF16654 [Drosophila ananassae]
          Length = 1327

 Score = 44.5 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E       K +ST      +KQ  
Sbjct: 311 RSEINHTINWVRSHLEHDAKVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 365

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 366 VFPGVRPRRLGTRGNSRYCYAAMR 389


>gi|307150955|ref|YP_003886339.1| virulence-associated E family protein [Cyanothece sp. PCC 7822]
 gi|306981183|gb|ADN13064.1| virulence-associated E family protein [Cyanothece sp. PCC 7822]
          Length = 496

 Score = 44.5 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 96/295 (32%), Gaps = 37/295 (12%)

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
           +E +  +    V      G+K    + + G  G GK++         G+ +  N+    +
Sbjct: 209 NEYLYRWLIGAVRRVFEPGSKFDNALVLYGNQGVGKTSFFE----ILGSGFFSNSMTGKL 264

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTY 597
            ++            + L  S ++   E +        A IK        + R+ YG   
Sbjct: 265 DKD----------DYMILAQSWVLEWGELDGFTSKTYHATIKHFLSKREDSYRVPYGKNL 314

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
            + P         N   F+ +P     RR+ +IP    +  +      +L          
Sbjct: 315 LKMPRRSVIVGTTNSDNFLSDPSG--NRRFWIIP----VRKQQIDL--ELLKGSVKSIWS 366

Query: 658 WFLKGVKAYISKGLDVDIPEV---CLKAKEEERQGTDTYQAWIDDCC--DIGENLWEESH 712
             +   +     G+  ++P+      +      +  D ++ +I +C    + +   +   
Sbjct: 367 SAVIDYQK----GISDNLPKEFWKLQEEDNNYYEYEDPWENYIIECTKQTLQKEGEDFQG 422

Query: 713 SLAKSYSEYREQELNYDRKRISTRT-VTLNLKQKGFIGGIKREKIEKEWKSKRII 766
             +  +  +         K       ++  LK+ GF     +E++ K+ +  R+ 
Sbjct: 423 INSNEFFNFLNTNGMTVSKDKKNEMRLSDILKKLGFS----KERVRKKGRQVRVY 473


>gi|268561690|ref|XP_002646506.1| Hypothetical protein CBG20339 [Caenorhabditis briggsae]
 gi|268561700|ref|XP_002646508.1| Hypothetical protein CBG20343 [Caenorhabditis briggsae]
 gi|187023416|emb|CAP37377.1| hypothetical protein CBG_20339 [Caenorhabditis briggsae AF16]
 gi|187023418|emb|CAP37379.1| hypothetical protein CBG_20343 [Caenorhabditis briggsae AF16]
          Length = 415

 Score = 44.5 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 51/309 (16%), Positives = 98/309 (31%), Gaps = 31/309 (10%)

Query: 348 LDK-ITASIMNFLVSMKEDVFDLSEEP-----EDNNKNSKSPRFWFNTDYRRQNVEENSK 401
             K         +   ++ +  L         +      +  R      +  +  +   K
Sbjct: 31  YWKTKLDEAEQQVREKEQTIRRLGASKNELNGKVGQLKEEINRLHEQASHVGEVCKAMDK 90

Query: 402 AKSTAQS-LEAGSIFSITSDLLDSSSRFLGEQDGI-LDLETGQKVKPTKELYITKSTGTP 459
            K   +S  +   I ++ S  +D S    G +  +  D     KV P K   +       
Sbjct: 91  KKVLVKSHPDGKYIVNVDSVSVDMSQMTAGTRVAMKADSYMIHKVLPNKVDPLVSLMMVE 150

Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSG 513
            V     +    L     E +EV++           +G+A        + + + G  G+G
Sbjct: 151 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTG 204

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           K+ L   + +       I    S+++Q    E  +    L  +       I   +E D I
Sbjct: 205 KTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSI 263

Query: 574 NAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY 627
            +++++  +GGD    R    L       E+  +    +  N+   +   D A  R  R 
Sbjct: 264 GSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRI 320

Query: 628 -IVIPFDKP 635
              I F  P
Sbjct: 321 DRKIEFPAP 329


>gi|220909682|ref|YP_002484993.1| hypothetical protein Cyan7425_4322 [Cyanothece sp. PCC 7425]
 gi|219866293|gb|ACL46632.1| hypothetical protein Cyan7425_4322 [Cyanothece sp. PCC 7425]
          Length = 811

 Score = 44.5 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 43/170 (25%), Gaps = 32/170 (18%)

Query: 28  KRPQRLGKWEEQLLSSE--KIDKLP----------------ACGFGFVCG-VGEQPLYAF 68
           K+P  +  W++     +     +                    G G + G  GE  L   
Sbjct: 40  KQPAYISGWKDGEPIVKSINWKQFQTNMPQDSMLGVWFRDRKTGIGTLAGWNGEHWLGWI 99

Query: 69  DIDSKDEKTANTFKDTFEIL-------HGTPIVRIGQKP-KILIPFRMNKEGIKKKKT-- 118
           D D KD  +                   G P  R      + LI +    E         
Sbjct: 100 DFDVKDFASQEACDRAVAEWMEQYQIVKGCPRFRTPGGGYRFLIAWEKEPENFGANNGFS 159

Query: 119 --TESTQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
              + +    ++L   G + +         K Y W        +  +P  
Sbjct: 160 LSPDGSTRSGELLTKNGGHTLLPPTIGVNGKPYYWEYWQEYPPLASSPEA 209


>gi|169634211|ref|YP_001707947.1| putative primase [Acinetobacter baumannii SDF]
 gi|169153003|emb|CAP02061.1| conserved hypothetical protein; putative primase [Acinetobacter
           baumannii]
          Length = 909

 Score = 44.5 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 61/550 (11%), Positives = 160/550 (29%), Gaps = 51/550 (9%)

Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
            + P +    V    K   +    ++    +    +   + N  +          +    
Sbjct: 205 NNYPSILLNKVAEQCKQADKPRPKIIWAFDADQAGRDGIDKNIERAKADGWDCAAALPPS 264

Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279
            +     ++       ++ + R +    +  R +    +     +       F   +   
Sbjct: 265 GWNKTDWND-------LYKQERLTESDLKNYRYFGDLHTAERPAD--KAILMFKRTKSNS 315

Query: 280 TAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH--FLYTADTKAWYKKD 337
                +     F          L      D  N+      K      L     ++ Y   
Sbjct: 316 FPFDFNNRLYWFKMDADAYNVKLREIGMEDDDNEDWLQKEKDEFDEKLIDQAIRSCYSVT 375

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
           +      +    + +A I +     + D     +  +         +    ++++++ + 
Sbjct: 376 EIANCKPTALYYQYSAEIDDAKYYFRID---FPKNAQPVKNTFTGGQLSAASEFKKRLLA 432

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD----------GILDLETGQKVKPT 447
                  T    +   +   T + +    + +              G + ++ G+     
Sbjct: 433 VAPGVIYTGNGAQLDRVLRNTIENI-RRVQLINYIGYHHELQTYVLGDIAVQHGKTYHIN 491

Query: 448 KELYI------------TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
            + Y               +      +GE  +E++  +   ++   ++   T   G   +
Sbjct: 492 ADDYFALPRQVNLKANVPFALKINKEQGEYKKEWIKDLIEAYDVRGLVT-LTAFFGSLFV 550

Query: 496 GGNKAQRFIH----IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
              + +        I G  G+GKST++N +    G +   N +   +  N+  E+G    
Sbjct: 551 QQIRKKHKSFPFLEIVGHAGTGKSTMLNFMWKLLGCE-DNNGDYEGLDPNKTSESGLIRT 609

Query: 552 SLIRLMGSRIVIISETNEND------EINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
              ++    +++I      +      + N   +K +  G  + AR             F 
Sbjct: 610 FR-QVSNLPVLLIESDRSGENQPYTRQFNWDMLKTLYDGGSLGARGMKTGGNETYDPPFM 668

Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
             ++ +++  V    +A   R++ I F+K      +  A K   KY +E   +F+     
Sbjct: 669 GSLIVSQNAEVNG-SEAIKGRFLHIGFEKKHLTAQSLAASKRLQKYKIEDVSYFILSCLE 727

Query: 666 YISKGLDVDI 675
              K L+   
Sbjct: 728 KEEKILETYE 737


>gi|88604075|ref|YP_504253.1| hypothetical protein Mhun_2842 [Methanospirillum hungatei JF-1]
 gi|88189537|gb|ABD42534.1| hypothetical protein Mhun_2842 [Methanospirillum hungatei JF-1]
          Length = 198

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 16/140 (11%)

Query: 19  KLIPLRLGDKRPQRLGKWEEQLLSSE----KIDKLPACGFGFVCGVGEQPLYAFDIDSKD 74
           + I +  G K P       +   S +    +        +G +       +   D+D KD
Sbjct: 26  RFILVASGSKNPIEKEWSSKNNYSIDDPVLQKHISSGGNYGVI---PSSTIAVLDVDEKD 82

Query: 75  EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK---KTTESTQGHL-DILG 130
                   D  +    T IV+ G      I  ++  E   KK      +    H+ +I  
Sbjct: 83  IFDRLEILDYLKE---TFIVKTGSDDGYHIYLKIKDECPAKKIPLYDPKDNSKHIGEIFF 139

Query: 131 CGQ--YFVAYNIHPKTKKEY 148
                + V       +  +Y
Sbjct: 140 SDCPAFVVGPGCTHPSGNKY 159


>gi|294664100|ref|ZP_06729496.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606131|gb|EFF49386.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 583

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 12/175 (6%)

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKY 523
           ++L  +   F +  ++   T   G       +A           G  G+GK+TL+  +  
Sbjct: 208 DWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAAHKSFPFLEATGEAGAGKTTLLTFLWK 266

Query: 524 AFG-NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
             G + Y     A      R    G+ +   + L+ +    + + +        ++K   
Sbjct: 267 LLGRSDYEGFDPAKSSKAGRARAMGQVSGMPVVLLEADRSDVDKAHA-RTFEWDELKDFF 325

Query: 583 GGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           GG  +  R   N GN   E P   T  I  N  +   +  +A   R + + F +P
Sbjct: 326 GGGTLATRGVRNGGNETYEPPFRGTIVISQNAAV---DASEAILTRIVKLHFKRP 377


>gi|301096539|ref|XP_002897366.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262107057|gb|EEY65109.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 235

 Score = 44.1 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 23/181 (12%)

Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLN------YGNTYSESPASFTP-FIVPNK 612
            + +  E      +     KQ+   D M           + ++ S       P  I  NK
Sbjct: 1   MVFLFGEDGSGKSLLMNLSKQILCCDDMNNHAKTLSKAAFLSSISSFHDWDIPTIINSNK 60

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF----LKGVKAYIS 668
               ++               + + +++ +   +++ K             LK    Y +
Sbjct: 61  LPNYKDESG------------EVVQSKNTNLENEIKDKEFGVFLHRCRPTFLKFCSRYKN 108

Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
           KG+    P   ++++   R  T+    +I D C      +     L K+   Y  ++   
Sbjct: 109 KGVGTFCPVSFIESRNLLRMATNNTYQFIFDRCKYEGGTFTSVPQLNKAMKAYINEKYEM 168

Query: 729 D 729
            
Sbjct: 169 K 169


>gi|297565775|ref|YP_003684747.1| Bifunctional DNA primase/polymerase [Meiothermus silvanus DSM 9946]
 gi|296850224|gb|ADH63239.1| Bifunctional DNA primase/polymerase [Meiothermus silvanus DSM 9946]
          Length = 289

 Score = 44.1 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 51/172 (29%), Gaps = 18/172 (10%)

Query: 10  AKQAIHNGFKLIPLRLGDKRPQ---RLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
           A +    G+ ++P+    KRP              +   I       P      V  V  
Sbjct: 8   ALEYASMGYPVLPVESESKRPIAYLAPHGLHSASTNPRIISAWYRLEPTAN---VAVVPP 64

Query: 63  QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
             +   D+DS+      +   +F  L   P     +       +     G+  +  +  +
Sbjct: 65  AGVVILDLDSRASW--ESLTRSFPALLEAPHSHTPRGGT--HCYLRVPSGVALRACSTGS 120

Query: 123 QGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
               ++   G  Y +      +    Y+W  P    +  + PL+    +  L
Sbjct: 121 LPAFEVKRSGLAYVLEAPSRTERG-AYSWAVPL--RRPSELPLMPYAILARL 169


>gi|198453554|ref|XP_001359237.2| GA21990 [Drosophila pseudoobscura pseudoobscura]
 gi|198132408|gb|EAL28382.2| GA21990 [Drosophila pseudoobscura pseudoobscura]
          Length = 1344

 Score = 44.1 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E       K +ST      +KQ  
Sbjct: 299 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 353

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 354 VFPGVRPRRLGTRGNSRYCYAAMR 377


>gi|195568743|ref|XP_002102373.1| GD19544 [Drosophila simulans]
 gi|194198300|gb|EDX11876.1| GD19544 [Drosophila simulans]
          Length = 1272

 Score = 44.1 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E       K +ST      +KQ  
Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 358

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382


>gi|195502302|ref|XP_002098163.1| GE24099 [Drosophila yakuba]
 gi|194184264|gb|EDW97875.1| GE24099 [Drosophila yakuba]
          Length = 1281

 Score = 44.1 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E       K +ST      +KQ  
Sbjct: 305 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 359

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 360 VFPGVRPRRLGTRGNSRYCYAAMR 383


>gi|195451141|ref|XP_002072785.1| GK13786 [Drosophila willistoni]
 gi|194168870|gb|EDW83771.1| GK13786 [Drosophila willistoni]
          Length = 1388

 Score = 44.1 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E       K +ST      +KQ  
Sbjct: 318 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 372

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 373 VFPGVRPRRLGTRGNSRYCYAAMR 396


>gi|195392154|ref|XP_002054724.1| GJ22650 [Drosophila virilis]
 gi|194152810|gb|EDW68244.1| GJ22650 [Drosophila virilis]
          Length = 1344

 Score = 44.1 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E       K +ST      +KQ  
Sbjct: 311 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 365

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 366 VFPGVRPRRLGTRGNSRYCYAAMR 389


>gi|195343983|ref|XP_002038570.1| GM10553 [Drosophila sechellia]
 gi|194133591|gb|EDW55107.1| GM10553 [Drosophila sechellia]
          Length = 1280

 Score = 44.1 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E       K +ST      +KQ  
Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 358

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382


>gi|195152157|ref|XP_002017003.1| GL22063 [Drosophila persimilis]
 gi|194112060|gb|EDW34103.1| GL22063 [Drosophila persimilis]
          Length = 1380

 Score = 44.1 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E       K +ST      +KQ  
Sbjct: 299 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 353

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 354 VFPGVRPRRLGTRGNSRYCYAAMR 377


>gi|195109963|ref|XP_001999551.1| GI24583 [Drosophila mojavensis]
 gi|193916145|gb|EDW15012.1| GI24583 [Drosophila mojavensis]
          Length = 1378

 Score = 44.1 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E       K +ST      +KQ  
Sbjct: 310 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 364

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 365 VFPGVRPRRLGTRGNSRYCYAAMR 388


>gi|194899061|ref|XP_001979081.1| GG10435 [Drosophila erecta]
 gi|190650784|gb|EDV48039.1| GG10435 [Drosophila erecta]
          Length = 1278

 Score = 44.1 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E       K +ST      +KQ  
Sbjct: 302 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 356

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 357 VFPGVRPRRLGTRGNSRYCYAAMR 380


>gi|24644617|ref|NP_649656.1| CG9727 [Drosophila melanogaster]
 gi|10727126|gb|AAF54121.2| CG9727 [Drosophila melanogaster]
 gi|51092155|gb|AAT94491.1| LD40317p [Drosophila melanogaster]
 gi|220943436|gb|ACL84261.1| CG9727-PA [synthetic construct]
          Length = 1280

 Score = 44.1 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E       K +ST      +KQ  
Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 358

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382


>gi|307330207|ref|ZP_07609355.1| Bifunctional DNA primase/polymerase [Streptomyces violaceusniger Tu
           4113]
 gi|306884113|gb|EFN15151.1| Bifunctional DNA primase/polymerase [Streptomyces violaceusniger Tu
           4113]
          Length = 342

 Score = 44.1 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 38/186 (20%), Gaps = 67/186 (36%)

Query: 17  GFKLIPLRLGDKRPQRLG--------------------KWEEQLLSSEKIDKLPAC---- 52
           GF++IPL    K P                           +     E I  L A     
Sbjct: 20  GFRVIPLTR-AKLPAVRSPHHHDPAPLPCRGECGRLGHGVHDASADPEAIRALFAAAPWA 78

Query: 53  -GFGFVCGVGEQPLYAFDIDSKD------------------------------------- 74
            G+G  CG     L   D+D KD                                     
Sbjct: 79  TGYGIACGRAPYHLIGLDLDLKDGRPGRPRGPGGAGATDGRARTRKPGASGKDGTDSTDG 138

Query: 75  --EKTANTFKDTFEILHGTPIVRIG--QKPKILIPFRMNKEGIKKKKTTESTQGHLDILG 130
                                + +           +     G+    +       +DI G
Sbjct: 139 LTADGLAALARLAREHAFAIPLTVTVLTPSGGRHLWLCGPPGLAVPNSAGRLAPGIDIRG 198

Query: 131 CGQYFV 136
            G Y V
Sbjct: 199 LGGYLV 204


>gi|162606568|ref|XP_001713314.1| 26S protease regulatory SU 7 [Guillardia theta]
 gi|12580780|emb|CAC27098.1| 26S protease regulatory SU 7 [Guillardia theta]
          Length = 394

 Score = 44.1 bits (102), Expect = 0.093,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 94/302 (31%), Gaps = 22/302 (7%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
           S +++ +  SI  F    K   ++L ++       +          ++ +  + N     
Sbjct: 17  SESIENLFESIYEFSNYKKPQEWNLFQDQIKTQNENALQVAQCTKIFKNKKDQVNCI--- 73

Query: 405 TAQSLEAGSIFSITSDLLDSS---SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
                    + +I   L  +       +G       ++    +K    + +         
Sbjct: 74  VYVKHSGKFVVNIGEKLSPTDIEEGMRVGIDRSKYQIQITLPLKIDPNVTMM---TVEEK 130

Query: 462 EGEPSQEFLDLVSGYFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
                +E     +   E +E+++Y        +L+G     +   + G  G+GK+ +   
Sbjct: 131 PEITYKEIGGCKNQILEIKEIVEYPLLYPRRFSLMG-IDPPKGALLYGPPGTGKTLVARA 189

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           +     N   +    S+++Q    E  +    L  L  ++   I   +E D I   +   
Sbjct: 190 VANKT-NASFVKINCSELVQKYIGEGARLVRELFNLSKTKFACIMFFDELDAIGGTRFSG 248

Query: 581 MTGGDCMTARLN----YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFD 633
            +GG+    R            E   +    +  N+   +   D A  R  R    I F 
Sbjct: 249 ASGGENEVQRTMLEIVNQLDGFEKRGNTKVLMATNRPDTI---DPALLRPGRLDRKIEFS 305

Query: 634 KP 635
            P
Sbjct: 306 LP 307


>gi|114567433|ref|YP_754587.1| glycosylase-like protein [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
 gi|114338368|gb|ABI69216.1| glycosylase-like protein [Syntrophomonas wolfei subsp. wolfei str.
            Goettingen]
          Length = 1178

 Score = 44.1 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 49/183 (26%), Gaps = 10/183 (5%)

Query: 109  NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
              + +K+ +     +   +     +Y +         K Y +        +    L   +
Sbjct: 861  PSKYLKRYEGNPILEPIEEHDWESKYVLNPGALRIKDKVYLFYRAVGSDGISRIGLAISD 920

Query: 169  DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI-------TAFLSCFGEEF 221
              + L +  + I  P   ++K            +R               A  S   E+F
Sbjct: 921  GYKVLERLPRPIFSPSTAEEKRGCEDPRLIIIEDRIIMLYTAYDGNIAQIAAASIKVEDF 980

Query: 222  YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
              G ++ W    +A  +     +       + + +   Y        W T+  E      
Sbjct: 981  LAGKYENWKRDGLAFKNIWDKDAILFA--EKINGKYVIYHRIE-PSIWATYMKEISFPLK 1037

Query: 282  KKR 284
            +  
Sbjct: 1038 ENH 1040


>gi|30387319|ref|NP_848398.1| helicase [Choristoneura fumiferana MNPV]
 gi|7108525|gb|AAF36456.1|AF127530_1 P143 [Choristoneura fumiferana MNPV]
 gi|30270053|gb|AAP29869.1| helicase [Choristoneura fumiferana MNPV]
          Length = 1228

 Score = 44.1 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 10/153 (6%)

Query: 485  YFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            Y     G +L       ++ +++ GV  SGKST   L+       + +     D   +  
Sbjct: 899  YMLMHFGGSLSAPTDYGRKAVYLPGVPLSGKSTFFALL------DFWVLMHKFDGETHTG 952

Query: 544  PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
             E+ + +   +  + S++      NE  + + +  K+        ++        +  A+
Sbjct: 953  DESKETSDKEVSKLNSQL---YTINELKKCSESFFKKHADSSKSDSKSRKYQGLLKYEAN 1009

Query: 604  FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
            +   IV N  L+V + DD    R++++  D   
Sbjct: 1010 YKMLIVNNNPLYVDDFDDGVLNRFLIVYTDHKF 1042


>gi|23577821|ref|NP_703085.1| DNA helicase [Rachiplusia ou MNPV]
 gi|23476466|gb|AAN28013.1| DNA helicase [Rachiplusia ou MNPV]
          Length = 1221

 Score = 44.1 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 12/155 (7%)

Query: 486  FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                   +L +  +  ++ I++ G  GSGKS+   L+ Y                 +   
Sbjct: 894  MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSFFELLDYLV----------LMHKFDDDN 943

Query: 545  EAGKANPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
             +G++N        S++   +   NE  + + +  K+        ++        +  A+
Sbjct: 944  HSGESNKETSDKEVSKLNSQLYTINELKQCSESYFKKHADSSKSDSKSRKYQGLLKYEAN 1003

Query: 604  FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
            +   IV NK L+V + DD    R++++  +    +
Sbjct: 1004 YKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1038


>gi|325955368|ref|YP_004239028.1| ATPase AAA [Weeksella virosa DSM 16922]
 gi|323437986|gb|ADX68450.1| AAA ATPase central domain protein [Weeksella virosa DSM 16922]
          Length = 238

 Score = 44.1 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 27/182 (14%)

Query: 473 VSGYFESEEVMDYFTRCV---GM---ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
           +   F  EE  +   R V         +  G +    I + G  G GK+     I  A G
Sbjct: 16  LDDVFIEEEYREKIQRFVKEHSYREKLIELGLEVDHKIMLYGASGCGKTMTAKAIGNALG 75

Query: 527 NQ-------YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
            +        ++ A   +  QN      KA      L      ++ ++   D+ +  ++K
Sbjct: 76  KKVLILNLSNIVCARIGETSQNLKQIFDKAKREKAILFLDEFDLLGKSRTYDDQDVGEMK 135

Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV-IPFDKPIAN 638
           ++         L   +               N    +   D A WRR+ + IP+   + +
Sbjct: 136 RLVNVIIQQIDLLSSD--------VILICATNHAEMI---DTALWRRFQLRIPY--QLPD 182

Query: 639 RD 640
           R+
Sbjct: 183 RE 184


>gi|29567157|ref|NP_818719.1| helicase [Adoxophyes honmai NPV]
 gi|29467933|dbj|BAC67323.1| helicase [Adoxophyes honmai NPV]
          Length = 1213

 Score = 44.1 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 15/157 (9%)

Query: 486  FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                   +L +  +  +  I++ G  GSGKST   L++         + +   I      
Sbjct: 898  VLSYFAASLAIPSDYDKFCIYLNGTPGSGKSTFYELLETFLVVHKHDSDQYKLIKDQTND 957

Query: 545  EAGKANPSLIRLMGSRIVIISETNENDEINAAKIK--QMTGGDCMTARLNYGNTYSESPA 602
                        +   I  +   NE    N +  K    +       R  +G+   E   
Sbjct: 958  IE----------VDKLISQLYVINEMKVCNDSFFKTNSDSTKSNSVCRKYHGSQKYE--G 1005

Query: 603  SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
            ++   I+ NK L + + D     R+ +I  D      
Sbjct: 1006 NYKMMIINNKPLHIIDYDKGVRNRFGIIYTDHKFEED 1042


>gi|310657616|ref|YP_003935337.1| phage DNA-polymerase or DNA-primase [Clostridium sticklandii DSM
           519]
 gi|308824394|emb|CBH20432.1| putative phage DNA-polymerase or DNA-primase [Clostridium
           sticklandii]
          Length = 318

 Score = 44.1 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/289 (10%), Positives = 72/289 (24%), Gaps = 31/289 (10%)

Query: 16  NGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS--- 72
           +   + P+    K       W +   +   +      G  FV      P    D+D+   
Sbjct: 39  SKIPISPVTFKAKGWNERKSWIDFDNALISLKNSNCDGVAFVL-TNHDPFICIDLDNCIT 97

Query: 73  KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132
            +   +N   +    L     + I      +  F   +      K   +    ++I    
Sbjct: 98  YENTFSNKLAEECVKLFENTYMEISHSGSGIHIFLEGEIP----KNINNQTKGIEIYKEN 153

Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
                                    ++ +T +    ++        +I   +  +++   
Sbjct: 154 HCISMTG------------------EISNTLIYPSRNIINRQSDLDKIYKKMSLNERYKA 195

Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252
            S + +     +  + +    + C          +  +        +         +   
Sbjct: 196 KSNSKSITITEEVPDADSIIEIMCKYNNTAKELFEGALVSGDWSKDDFH-----LLLLLN 250

Query: 253 WSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301
               G+ Y  E+   K +    EE      + S    L     K +  G
Sbjct: 251 SYTHGNEYLMEDIFLKSNLSRAEEKSKRTDRESYLKYLRKSIKKAVEIG 299


>gi|254438995|ref|ZP_05052489.1| hypothetical protein OA307_3865 [Octadecabacter antarcticus 307]
 gi|198254441|gb|EDY78755.1| hypothetical protein OA307_3865 [Octadecabacter antarcticus 307]
          Length = 623

 Score = 44.1 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 16/230 (6%)

Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PSQEFLDLVSG 475
           D         + ++  +                   P    +         +  L  +  
Sbjct: 169 DEGKAIAHCGNHLVQPQGRSLAPSEHRGKCIMIGAAPITPPDISLIDPEEVEFLLSELKA 228

Query: 476 YFE---SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
            +      +   +F      +L G    +  +++ G  GSGKS L+ L+    G      
Sbjct: 229 LWGWKRDVDADIFFGWVAAASLGGFPAWRSHLYVYGSRGSGKSKLIELVAGLLGEFGGNV 288

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RL 591
              +     R     +A P LI          + + ++     A  ++M+GG+     R 
Sbjct: 289 LNDATEAGIRQSRNNQARPILIDEFEPDQGTRNGSKQDKMF--ALFRRMSGGEGGRVSRG 346

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
              ++          ++    H+ +   D +   R+++I         D 
Sbjct: 347 GADHSAVSFRTLGAAYVTSINHIQLEPQDRS---RFVMIDLGHLPTTSDP 393


>gi|114680148|ref|YP_758561.1| DNA helicase [Plutella xylostella multiple nucleopolyhedrovirus]
 gi|91982212|gb|ABE68480.1| DNA helicase [Plutella xylostella multiple nucleopolyhedrovirus]
          Length = 1221

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 12/155 (7%)

Query: 486  FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
                   +L +  +  ++ I++ G  GSGKS+   L+ Y                 +   
Sbjct: 894  MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSFFELLDYLV----------LMHKFDDDN 943

Query: 545  EAGKANPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
             +G++N        S++   +   NE  + + +  K+        ++        +  A+
Sbjct: 944  HSGESNKETSDKEVSKLNSQLYTINELKQCSESYFKKHADSSKSDSKSRKYQGLLKYEAN 1003

Query: 604  FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
            +   IV NK L+V + DD    R++++  +    +
Sbjct: 1004 YKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1038


>gi|168804177|ref|YP_001686993.1| hypothetical protein SGHV045 [Glossina pallidipes salivary gland
            hypertrophy virus]
 gi|146164249|gb|ABQ08818.1| hypothetical protein SGHV045 [Glossina pallidipes salivary gland
            hypertrophy virus]
          Length = 1728

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 13/141 (9%)

Query: 496  GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
              N+ +          +GKS  M+ +              +            A+  L  
Sbjct: 1443 PINQNRIAGLFLNRTSTGKSKYMDQMLKVVFLTNTSKTITA------AEMDNDADRQLSN 1496

Query: 556  LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
            L  + ++++   +E   +   K K +     ++ R  Y              +  N    
Sbjct: 1497 LANTNLLLV--VDEVTNLGT-KFKLLCNNTTLSIRRLYEPDTITLQIHSHLVLTTNNDP- 1552

Query: 616  VRNPDDAWWRRYIVIPFDKPI 636
                D A   R  +  FD+  
Sbjct: 1553 -SCQDIAVVARLRI--FDRKF 1570


>gi|195038619|ref|XP_001990754.1| GH18082 [Drosophila grimshawi]
 gi|193894950|gb|EDV93816.1| GH18082 [Drosophila grimshawi]
          Length = 1387

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   +    W+    +    +      +   Y  Y E     + K +ST      +KQ  
Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIVYCE---RLNIKPLSTADFGKVMKQ-- 358

Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
              G++  ++     S+     ++
Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382


>gi|156151672|gb|ABU54128.1| early protein E1 [Human papillomavirus type 53]
 gi|156151680|gb|ABU54135.1| early protein E1 [Human papillomavirus type 53]
 gi|156151688|gb|ABU54142.1| early protein E1 [Human papillomavirus type 53]
          Length = 636

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 70/253 (27%), Gaps = 44/253 (17%)

Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
            +G   +  +  +   ++  E + +      + L G  K    + I G   +GKS     
Sbjct: 421 DDGGDWKPIVQFLR--YQGVEFISFL-SYFKLFLQGTPKHN-CLVIYGPPNTGKSCFAMS 476

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
           +   F      +  +     +        N  L  L  +        +E        ++ 
Sbjct: 477 LINFF----HGSVISYVNSHSHFWLQPLDNTKLGMLDDATEACWRYIDEY-------LRN 525

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR----RYIVIPFDKPI 636
           +  G+ ++    +            P ++      +    DA  R    R  V+ F  P 
Sbjct: 526 LLDGNPVSLDRKHKQL---VQIKCPPVLITTN---INPMQDAKLRYLHSRIHVLQFLNPF 579

Query: 637 A-NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
             + + +   +L          W     + +    LD D  +             D    
Sbjct: 580 PIDVNGNPVYQLNNA------NWKCFFERTWSRLDLDNDEDKE---------NDGDAIAT 624

Query: 696 WIDDCCDIGENLW 708
           +    C  GEN  
Sbjct: 625 F---RCVPGENSR 634


>gi|123235258|ref|XP_001286732.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121852826|gb|EAX73802.1| hypothetical protein TVAG_058600 [Trichomonas vaginalis G3]
          Length = 173

 Score = 43.7 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 23/174 (13%)

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           +K +           Y +       +    +  N         D   RRY+V+       
Sbjct: 2   LKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSH 57

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695
            +D  +   L    T +                 +   IP    + ++   +   +    
Sbjct: 58  MQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPY--TEERQTLLEANKSVYEL 115

Query: 696 WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
           +ID    +C D          SL   Y +Y ++   Y     S RT   N+K  
Sbjct: 116 FIDETNFECLDE--------RSLYDEYKQYCQE---YGYMTASKRTFLANVKSL 158


>gi|289656454|gb|ADD14047.1| E1 protein [Human papillomavirus type 114]
          Length = 625

 Score = 43.7 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 15/152 (9%)

Query: 486 FTRCVGMA--LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
           F R +G     L G   +  +   G   +GKS     +    G        +     +  
Sbjct: 427 FIRFMGALKQFLKGTPKKSCLVFYGPSDTGKSLFCMSLLNFLG----GAVISFVNSPSHF 482

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
             +  A+  +  L  +        +         ++ +  G+ ++    + N        
Sbjct: 483 WLSPLADTKIGLLDDATYQCWVYIDTY-------LRSVLDGNTISIDRKHKNLTQLKCPP 535

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
               I  N +    +       R ++ PF   
Sbjct: 536 --LLITTNVNPEADDTFKYLKSRMVMFPFPNK 565


>gi|23334599|ref|NP_694824.1| hypothetical protein [Junonia coenia densovirus]
 gi|6136266|sp|Q90054|VNCS_JDNVP RecName: Full=Non-capsid protein NS-1; AltName: Full=NCVP1;
           AltName: Full=Non-structural protein NS1
 gi|257677|gb|AAB23699.1| orf2 [Junonia coenia densovirus]
          Length = 545

 Score = 43.7 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 53/512 (10%), Positives = 140/512 (27%), Gaps = 34/512 (6%)

Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP-----LVKDKKSIIPSKTWT 198
           T ++  W+       +      S+E+ +Y+ +  +++          +  K      +  
Sbjct: 40  TSRKREWSHGGRGT-MASIAKESQENFQYMAEELEKMGSEFFGYVTGQSIKPSSAYISDV 98

Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258
                     +    L  +G    NG    +      +H     S   +     W  Q  
Sbjct: 99  IILRDIQLRDQCLDVLREYGRSRRNG-LFGFSEEGDHIHVIHDCSYTNRSCRDIWISQVK 157

Query: 259 TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSI 318
            +       K   F +E           +  +     + I     + +         ++ 
Sbjct: 158 PFGSVQKTGKPVKFIWEFKRTDWYDVFIYFFVRKRGERAIYVRGESGKIPSNDECVRWTR 217

Query: 319 YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
             K   + ++     Y + +   +  S    + + +  +     ++  +   +      K
Sbjct: 218 EFKEREMVSSSDCTDYYECEQQEHKIS----RRSDAGSSNGRLYEKKAYSAGKFAYIRKK 273

Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438
                R ++ +           +        +         D        +  ++ I +L
Sbjct: 274 TKALLRKYYVSPVSAICDVPEFRDDDLLCDPKNRDYIQAACDDFGKDLNAMSLRE-IYNL 332

Query: 439 ---ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVGMA 493
              +     +     Y    +   +   E S   +  +  +   + E+++  F   +   
Sbjct: 333 LTEDYNFTDEQELNPYALFISSMKYDNLENSLNIIIELLKFQCNDDEDLIVEFLTNLVNV 392

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           L           I     +GK+   ++I                +   +  +A + N   
Sbjct: 393 LDRRIPKLNAFLIISPPSAGKNFFFDMIFGLL------------LSYGQLGQANRHNLFA 440

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-NTYSESPASFTPFIVPNK 612
            +   ++ V++      +      IK M GGD  T R+    + + +        +  N 
Sbjct: 441 FQEAPNKRVLLWNEPNYESSLTDTIKMMFGGDPYTVRVKNRMDAHVKRTP--VIILTNNT 498

Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644
             F+     A+  R I   ++     +D    
Sbjct: 499 VPFMYET--AFSDRIIQYKWNAAPFLKDYELK 528


>gi|15741130|gb|AAL06737.1|AF349909_3 putative replication protein E1 [Human papillomavirus type 86]
          Length = 652

 Score = 43.7 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 64/200 (32%), Gaps = 24/200 (12%)

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
             +  + L+   F+  E + +    +   L G  K    +   G   +GKS     +   
Sbjct: 437 DWRHIVKLLR--FQGIEFISFM-EALKQFLKGTPKKS-CLVFYGPSDTGKSLFCMSLLRY 492

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTG 583
            G   +    ++            ++  L  L+ ++I ++ +  +   +     ++ +  
Sbjct: 493 LGGAVISFVNST------------SHFWLSPLVDAKIGLLDDATQQCWVYIDTYLRTVLD 540

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-RYIVIPFDKPIA-NRDA 641
           G+ M+    + N          P ++        +    + R R +V PF +    + + 
Sbjct: 541 GNTMSIDRKHKNLQ---QLKCPPLMITTNVNIAADDTFKYLRSRMVVFPFLQKCPLDSNG 597

Query: 642 SFAQKLETKYTLEAK--KWF 659
               KL  +         W 
Sbjct: 598 EPVYKLNNENWKSFFQRSWA 617


>gi|291010736|gb|ADD71724.1| DNA helicase [Leuconostoc phage 1-A4]
          Length = 450

 Score = 43.7 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 21/157 (13%)

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIH-----IRGVGGSGKSTLMNLIKYAFGNQYVINA 533
             E+    TR     L+   K           + G  G GK+T+   +    G+ Y  + 
Sbjct: 178 DNELTVKMTRAFFAGLVHKVKNPNVKFDLVLDLVGGQGIGKTTMFEKLG---GDYYTDSI 234

Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
            +                SLI +  + IV   E   +D+ + + +K       M  R+ Y
Sbjct: 235 TSFT-----------DKDSLIEMSKNLIVNDDEMAISDKTDFSTLKSFITKRTMNIRVPY 283

Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
             T  + P  F      N + ++R+      RR+I +
Sbjct: 284 AETSKDYPKGFVLVRTTNNNEYLRDKTG--NRRFITM 318


>gi|190893408|ref|YP_001979950.1| hypothetical protein RHECIAT_CH0003834 [Rhizobium etli CIAT 652]
 gi|190698687|gb|ACE92772.1| hypothetical protein RHECIAT_CH0003834 [Rhizobium etli CIAT 652]
          Length = 811

 Score = 43.7 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 21/174 (12%)

Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNL-IKYAFG 526
           L         E    +F R +   L           +   GV G+G+ +L N  +   FG
Sbjct: 459 LRFFQHLLPDERERAWFLRWLAYKLRRPEIPGPGVVMVAHGVHGTGRGSLTNALLPALFG 518

Query: 527 NQYVINAEASDIMQNRPPEAGK--------ANPSLIRLMGSRIVIISETNENDEINAAKI 578
           +QYV   E SD+       A                   G+                  +
Sbjct: 519 SQYVKKVELSDLTGRDGQGAFNEFASDSLIVTVDEASDEGASPRYAQ-----RRKAYDAL 573

Query: 579 KQMTGGDC--MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
           K +       +  R  +G+   E   +       ++       DD   RR+ ++
Sbjct: 574 KSLVEPAPRRIRIRRKFGSIGDEMTNASYLICTNHRDAIAIPHDD---RRFAIL 624


>gi|116696318|ref|YP_841894.1| putative helicase [Ralstonia eutropha H16]
 gi|113530817|emb|CAJ97164.1| putative helicase [Ralstonia eutropha H16]
          Length = 668

 Score = 43.7 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 13/82 (15%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD-EENFNYKWDTFDFEEIGDTAKK 283
           S  EWI + MA       +    E    WS+    Y  E +    W++FD          
Sbjct: 23  SRGEWIRLGMAAK----AAGLSFEDFHLWSQNAPNYKGERDCLTAWNSFD--------DG 70

Query: 284 RSTFTSLFYHHGKLIPKGLLAS 305
             T ++LF        +GL  +
Sbjct: 71  PITESTLFRAARDAGWQGLYKA 92


>gi|195575129|ref|XP_002105532.1| GD16958 [Drosophila simulans]
 gi|194201459|gb|EDX15035.1| GD16958 [Drosophila simulans]
          Length = 400

 Score = 43.7 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 88/313 (28%), Gaps = 48/313 (15%)

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
               E +      +             N++     +      E GS  +     +D +  
Sbjct: 21  QKISELQFTVNERQKNLLRLQAQRNELNLKVRLLREELQLLQEQGSYIAEVVKPMDKNKV 80

Query: 428 FLGE-QDGILDLETGQKVK------------PTKELYITKSTGTPFVEGEPSQEFLD--- 471
            +    +G   ++  + +               +   + K                    
Sbjct: 81  LVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLVSLMLVEKVPD 140

Query: 472 --------LVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
                   L     E +EV++           +G+A        + + + G  G+GK+ L
Sbjct: 141 STYEMVGGLDKQIQEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLL 194

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
              + +       I    S+++Q    E  +    L  +       I   +E D I +A+
Sbjct: 195 ARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 253

Query: 578 IKQMTGGDCMT---ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIP 631
           ++  TG   +      L       E+  +    +  N+   +   D A  R  R    I 
Sbjct: 254 LETGTGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVL---DQALLRPGRIDRKIE 310

Query: 632 FDKPIANRDASFA 644
           F  P  N +A   
Sbjct: 311 F--PPPNEEARLD 321


>gi|195341572|ref|XP_002037380.1| GM12144 [Drosophila sechellia]
 gi|194131496|gb|EDW53539.1| GM12144 [Drosophila sechellia]
          Length = 400

 Score = 43.7 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 88/313 (28%), Gaps = 48/313 (15%)

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
               E +      +             N++     +      E GS  +     +D +  
Sbjct: 21  QKISELQFTVNERQKNLLRLQAQRNELNLKVRLLREELQLLQEQGSYIAEVVKPMDKNKV 80

Query: 428 FLGE-QDGILDLETGQKVK------------PTKELYITKSTGTPFVEGEPSQEFLD--- 471
            +    +G   ++  + +               +   + K                    
Sbjct: 81  LVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLVSLMLVEKVPD 140

Query: 472 --------LVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
                   L     E +EV++           +G+A        + + + G  G+GK+ L
Sbjct: 141 STYEMVGGLDKQIQEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLL 194

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
              + +       I    S+++Q    E  +    L  +       I   +E D I +A+
Sbjct: 195 ARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 253

Query: 578 IKQMTGGDCMT---ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIP 631
           ++  TG   +      L       E+  +    +  N+   +   D A  R  R    I 
Sbjct: 254 LETGTGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVL---DQALLRPGRIDRKIE 310

Query: 632 FDKPIANRDASFA 644
           F  P  N +A   
Sbjct: 311 F--PPPNEEARLD 321


>gi|301115494|ref|XP_002905476.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262110265|gb|EEY68317.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 155

 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 2/74 (2%)

Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR- 639
           M     ++  +    +      +    +  N      +      RR +++ F K + +  
Sbjct: 1   MLTRGSISCPVKGKGSIEVLDWNIPTRLNSNHMPNYTDEAGEIARRLMIVKFGKQVPDDE 60

Query: 640 -DASFAQKLETKYT 652
            D    QK+     
Sbjct: 61  VDVELEQKVLLIER 74


>gi|27380128|ref|NP_771657.1| hypothetical protein bll5017 [Bradyrhizobium japonicum USDA 110]
 gi|27353282|dbj|BAC50282.1| bll5017 [Bradyrhizobium japonicum USDA 110]
          Length = 404

 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 15/147 (10%)

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
           +    V      G K    + + G  G+ KS+   ++    G+ Y  N            
Sbjct: 151 FLISLVARICEPGAKVDYMLVLEGTQGAMKSSACAILG---GDYYSDNLP---------- 197

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
           E G+       L G  ++ I E +      +A++K          R +YG      P   
Sbjct: 198 EIGEGKDVSQHLRGKWLIEIGEMHALKRAESAQLKAFITRQVERYRPSYGRFEVTEPRQC 257

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIP 631
                 NK  ++R+      RR+  + 
Sbjct: 258 VFIGTTNKDAYLRDETGG--RRFWPVK 282


>gi|291398411|ref|XP_002715511.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase
           5-like, partial [Oryctolagus cuniculus]
          Length = 334

 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 82/262 (31%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 9   DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 65

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++       F   +G+A        + + + G 
Sbjct: 66  MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHLEFFEALGIA------QSKGVLLYGP 119

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L+ +       I   +E
Sbjct: 120 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELLVMAREHAPSIIFMDE 178

Query: 570 NDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD     M   L       E+  +    +  N+   +   D    R
Sbjct: 179 IDSIGSSRLEGGSGGDSEVQRMMLELLNQLDGFEATKNIKVIMATNRIDIL---DSTLLR 235

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 236 PGRIDRKIEF--PPPNEEARLD 255


>gi|289661963|ref|ZP_06483544.1| hypothetical protein XcampvN_02386 [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 577

 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 22/180 (12%)

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKY 523
           ++L  +   F +  ++   T   G       +A           G  G+GK+TL+  +  
Sbjct: 202 DWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAGHKSFPFLEATGEAGAGKTTLLTFLWK 260

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII----SETNE--NDEINAAK 577
             G      ++       +  +AG+A  ++ ++ G  +V++    SE ++  +      +
Sbjct: 261 LLGR-----SDYEGFDPAKSSKAGRAR-AMGQVSGMPVVLLEADRSEPDKAHSKTFEWDE 314

Query: 578 IKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           +K   GG  +  R   N GN   E P   T  I  N  +   +  +A   R + + F +P
Sbjct: 315 LKDFFGGGTLATRGVRNGGNETYEPPFRGTIVITQNAAV---DASEAILTRIVKLHFKRP 371


>gi|150006226|ref|YP_001300970.1| hypothetical protein BVU_3737 [Bacteroides vulgatus ATCC 8482]
 gi|149934650|gb|ABR41348.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 230

 Score = 43.7 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 18/180 (10%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489
           DG   + +    K     ++        +  +       +L+   F    E+ MDYF   
Sbjct: 64  DGFCTVPSHVDYKRNIGSFLNLYEPITHIPQKGKFPHIQELIHHIFGEHYELGMDYFQLL 123

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
               L    K    + +     +GKST +N +K  F +    N       Q         
Sbjct: 124 Y---LNPVQKLPILLLVSQERNTGKSTFLNFLKAIFQDNVTFNTNEDFRSQFN------- 173

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT-YSESPASFTPFI 608
                   G  ++ + E   N   ++ ++K ++            +    +    F  + 
Sbjct: 174 ----ADWAGKLLIGVDEVLLNRREDSERLKNLSTASVYKIEAKGKDRCEVQFFGKFIMWF 229


>gi|166079181|gb|ABY81292.1| non-structural protein NS1 [Aleutian mink disease virus]
          Length = 175

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 17/141 (12%)

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
             F E E  +  L  +     +E    Y  + +   L   +  +  I   G GG+GK+ L
Sbjct: 45  IKFNEEEDDKPLLATIKDMGLNE---KYLKKALCTILTKQSGKRGCIWFYGPGGTGKTLL 101

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            +LI  A  N  ++                  N          I+   E           
Sbjct: 102 ASLICKATVNFGMVTT-------------SNPNFPWTDCGNRNIIWAEECGNFGNWVED- 147

Query: 578 IKQMTGGDCMTARLNYGNTYS 598
            K +TGG  +          S
Sbjct: 148 FKAITGGGDVKVDTKNKQPQS 168


>gi|303239097|ref|ZP_07325627.1| virulence-associated E family protein [Acetivibrio cellulolyticus
           CD2]
 gi|302593435|gb|EFL63153.1| virulence-associated E family protein [Acetivibrio cellulolyticus
           CD2]
          Length = 790

 Score = 43.3 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 75/279 (26%), Gaps = 46/279 (16%)

Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE--- 481
              +     G  ++   +     +  +  K       E +       L+  YF++E+   
Sbjct: 422 DRTYGLFSKGKYNIAVTKVSD-DRSYHPIKDFLNGLPEWDGVPRADTLLIEYFDAEDNEY 480

Query: 482 ----VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
                       V      G K    + + G  G GKSTL   +   +   +  + + SD
Sbjct: 481 VREVTRKTLCAAVARVFEPGIKFDYMLVLNGKQGIGKSTLFRKLGSPW---FCDSLQLSD 537

Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
                  E         +L G  I+ +SE     + +   +K          R  +G   
Sbjct: 538 THDKTAAE---------KLQGYWILEVSEMAGMKKTDIETLKAFITRQEDVYRATFGKRA 588

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWW------RRYIVIPFDKPIANRDASFAQKLETKY 651
              P         N        D  +       RR+  +     +  +D      +  + 
Sbjct: 589 VPHPRQCIFVGTTN-------SDRGFLRDITGNRRFWPVK--VQMGKKDPR---DITLEE 636

Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
             +   W  + +  Y +  L            E   +  
Sbjct: 637 VRQV--WA-EVMVRYRANELL-----CLKGEAERYAEEM 667


>gi|149054555|gb|EDM06372.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_a
           [Rattus norvegicus]
          Length = 385

 Score = 43.3 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 30/251 (11%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 91  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 147

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 148 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 201

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 202 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 260

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 261 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 317

Query: 626 --RY-IVIPFD 633
             R    I F 
Sbjct: 318 PGRIDRKIEFP 328


>gi|21410100|gb|AAH30840.1| Psmc5 protein [Mus musculus]
 gi|148702337|gb|EDL34284.1| protease (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_c
           [Mus musculus]
          Length = 348

 Score = 43.3 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 30/251 (11%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 81  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GGD    R    L       E+  +    +  N+   +   D A  R
Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307

Query: 626 --RY-IVIPFD 633
             R    I F 
Sbjct: 308 PGRIDRKIEFP 318


>gi|167761844|ref|ZP_02433971.1| hypothetical protein BACSTE_00187 [Bacteroides stercoris ATCC
           43183]
 gi|167700350|gb|EDS16929.1| hypothetical protein BACSTE_00187 [Bacteroides stercoris ATCC
           43183]
          Length = 293

 Score = 43.3 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 58/218 (26%), Gaps = 34/218 (15%)

Query: 60  VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVR------IGQKPKILIPFRMNKEGI 113
           V    L   DID KD    + + +  + L     +        G    ++IP +      
Sbjct: 77  VRHSGLICVDIDRKDNLHIDNWDEIKQELCKLKEIAYISLSVSGNGYFVIIPLKYPHAHK 136

Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
            + +  +     + I+            P            +  +               
Sbjct: 137 GQFEKLKQDFARIGIIID----------PACGDVTRMRCLSYDAEP-------------- 172

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
           +   + I       +     S  ++  +N      +    +   G +   G + +W  V 
Sbjct: 173 YINVEAIPYDGYYKEPRPTNSYQYSGGDNVLDKVAKCCEKIEANGIDI-TGDYKDWFTVG 231

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
            A+         G+      S+Q + Y     + K+  
Sbjct: 232 CALASL---GESGRSFFHICSRQNTKYKYAETDKKFSN 266


>gi|319778340|ref|YP_004129253.1| toprim domain protein [Taylorella equigenitalis MCE9]
 gi|317108364|gb|ADU91110.1| toprim domain protein [Taylorella equigenitalis MCE9]
          Length = 311

 Score = 43.3 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 6/124 (4%)

Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF 291
           +  A+  E   S  G EI   WSK+ S Y+E++    W +     I   +         +
Sbjct: 1   MGGAIKSEYGDS--GFEIWNGWSKRASNYEEKSAKSTWRSLKEGRINIASLFYEARKHGY 58

Query: 292 YHHGKLIPKGLLASRFSDA--YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349
               K      LA R +D     K     ++    L     +   K+  N          
Sbjct: 59  KDINKTYSSQELAKRQADYALIRKKREEEFRASRLLEAKQKEESIKESLNRW--NDGLYF 116

Query: 350 KITA 353
           +   
Sbjct: 117 REKD 120


>gi|328791134|ref|XP_625184.3| PREDICTED: fidgetin-like protein 1-like [Apis mellifera]
          Length = 657

 Score = 43.3 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/361 (9%), Positives = 105/361 (29%), Gaps = 25/361 (6%)

Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK 336
           I ++  +  +    F    K      L  +  +   +       K HF +  +  +   K
Sbjct: 193 INNSVDENISAQISFSKQSKSHSNLNLNQKNQNYVQQRSIKYEPKSHFRFEKEDSSKTYK 252

Query: 337 DKNNVYIWSLTLDK-ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
           + +    +S    K  +   +                     ++  + +   N   +++ 
Sbjct: 253 NNHESLNFSRNHMKLKSQKSVQHNEEDFNIAKPKINGFFKTARDELNVQMKTNKSMQKKT 312

Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
           +       S            I  ++ ++    +  +D  L     + V+  K   +   
Sbjct: 313 LGGKISVNSQFVCPFKREKEKIQENMYNNEIDTMEVEDERLKNVEPKMVELIKNEIMDSK 372

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
           T   + +    +    ++        +             G  +  + I + G  G+GK+
Sbjct: 373 TTICWDDIAGLEYAKKIIKEVVVYPMLRP-------DIFTGLRRPPKGILLFGPPGTGKT 425

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
            +   I     + +   + +S   +      +  +A  ++ R+    ++ + E +     
Sbjct: 426 LIGKCIASQSKSTFFSISASSLTSKWIGEGEKMVRALFAVARVYQPSVIFVDEID----- 480

Query: 574 NAAKIKQMTGGDCMTARLNYG------NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             + + Q +  +  ++R          +  + +       +           D+A  RR 
Sbjct: 481 --SLLTQRSETEHESSRRLKTEFLVQLDGAATADEDCILIVGATNRP--HELDEAARRRL 536

Query: 628 I 628
           +
Sbjct: 537 V 537


>gi|115712886|ref|XP_784151.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115942106|ref|XP_001184577.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 401

 Score = 43.3 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 96/303 (31%), Gaps = 39/303 (12%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
               +   V  L EE +   +             +++ + +           E   +  I
Sbjct: 43  QRNELNAKVRMLREELQLLQEQGSHVGEVVKAMDKKKVLVKV--------HPEGKFVVDI 94

Query: 418 --TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
             + D+ D      +  ++   D  T  K+ P K   +        V     +    L  
Sbjct: 95  DKSIDINDVQPNCRVALRN---DSHTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDK 151

Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
              E +EV++           +G+A        + + + G  G+GK+ L   + +     
Sbjct: 152 QIKEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 204

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             I    S+++Q    E  +    L  +       I   +E D I + +I+  +GGD   
Sbjct: 205 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRIEGSSGGDSEV 264

Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641
            R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +A
Sbjct: 265 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEA 319

Query: 642 SFA 644
              
Sbjct: 320 RLD 322


>gi|37528278|ref|NP_931623.1| hypothetical protein plu4457 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787715|emb|CAE16829.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 373

 Score = 43.3 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 69/216 (31%), Gaps = 31/216 (14%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM- 557
           +  R     G  G GK+   + +    G  + +    + +             +L     
Sbjct: 129 QPTRSAIFVGPPGVGKTLTASWLAQKLGVPFYVLDLTAVMSSYLGKSGNNLRAALDFAKR 188

Query: 558 GSRIVIISETN-----ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
           G  ++++ E +      +D+ +  ++K++                 + P+S       N 
Sbjct: 189 GPCVLLLDEIDSIAKKRSDDSDVGELKRLVT--------VILQEVDQWPSSSVLLAATNY 240

Query: 613 HLFVRNPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
              +   D A WRR+ +V+ F+KP +       Q+          +W +  +        
Sbjct: 241 EELI---DPALWRRFDLVLHFEKPDSETIKEAIQRFLGSDYAIFARW-IDILVILFKNES 296

Query: 672 DVDIPEVCLKAKEEERQG------TD--TYQAWIDD 699
             +I         + R+       +D    + +I D
Sbjct: 297 FSNIERSI----NKFRRSIALGIASDEVLIEDFIKD 328


>gi|212286059|ref|YP_002308366.1| replication protein [Chelonia mydas papillomavirus 1]
 gi|187941629|gb|ACD39807.1| replication protein [Chelonia mydas papillomavirus 1]
          Length = 559

 Score = 43.3 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 53/205 (25%), Gaps = 33/205 (16%)

Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
                 T       +     L   +           F + +   L      +  I   GV
Sbjct: 331 DRCEHHTDYDPDGWKNILLMLRFQNIALAD------FLQALRNCL-HCVPKKCCIAFVGV 383

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-- 567
             SGKS L             ++       +       +++  L  L   +I +I +   
Sbjct: 384 PDSGKSML------------CMSLIEFLEGRVLSFSNARSHFWLQPLGECKIALIDDATR 431

Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA----- 622
              D I    ++    G+ +     Y              I  N  +   +  +      
Sbjct: 432 PCWDYI-ETYLRNALDGNPVCIDAKYKAPVQIRCPP--ILITSNVDIRQGDQINGVLQES 488

Query: 623 ----WWRRYIVIPFDKPIANRDASF 643
                  R  V PFD+PI  R+   
Sbjct: 489 TYKYLLNRICVFPFDRPIPIREGRL 513


>gi|138374975|gb|ABO76875.1| putative replication protein E1 [Human papillomavirus type 66]
          Length = 630

 Score = 43.3 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 51/184 (27%), Gaps = 17/184 (9%)

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
           K   +   EG   +  +  +   ++  + + +      + L G  K    + + G   +G
Sbjct: 408 KHICSKVDEGGDWKPIVQFLR--YQGVDFISFL-SYFKLFLQGTPKHN-CLVLCGPPNTG 463

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KS     +   F      +  +    Q+        N  L  L  +        ++    
Sbjct: 464 KSCFAMSLINFF----QGSVISFVNSQSHFWLQPLDNAKLGLLDDATDTCWRYIDDY--- 516

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
               ++ +  G+ ++    +              I  N +            R  V  F+
Sbjct: 517 ----LRNLLDGNPISLDRKHKQLVQIKCPP--VIITTNVNPMQDAKLRYLRSRISVFKFE 570

Query: 634 KPIA 637
            P  
Sbjct: 571 NPFP 574


>gi|294673328|ref|YP_003573944.1| hypothetical protein PRU_0575 [Prevotella ruminicola 23]
 gi|294472091|gb|ADE81480.1| conserved hypothetical protein [Prevotella ruminicola 23]
          Length = 403

 Score = 43.3 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 98/301 (32%), Gaps = 42/301 (13%)

Query: 467 QEFL--DLVSGYFE-----SEEVMDYFTRCVGMALLGGNKAQRFIH------IRGVGGSG 513
            ++   + ++  F      S E +D+       A+    +  +         + G  G G
Sbjct: 108 PKWDGQNHLAKLFSRLPGISSEQLDFLIIWFRSAVAHWLQKDKLHANESVPTLIGSQGCG 167

Query: 514 KSTLMNLIKYA-FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
           KST +  +        Y    +  ++      E    N  L+ L         E +    
Sbjct: 168 KSTFIARLLPPELQEYY---LDHLNLSNKFDKEMALTNNLLVNL--------DELDAIRP 216

Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
              A +KQ      +  R  YG++  + P   +     N    + +   +  RR+I I  
Sbjct: 217 SQQAALKQTLSKIKVNGRTIYGSSQQDRPRYASFVATTNNPHPLSDVTGS--RRFICIE- 273

Query: 633 DKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKA--YISKGLDVDIPEVCLKAKEEERQG 689
              I +      A +++ +       + +  +KA  + +            +  +     
Sbjct: 274 ---IPDGQYIDNAGEIDYEQLYAQLVYEVNELKAPYWFTNEQV----ARIQELNQNYTDE 326

Query: 690 TDTYQAWIDDCCDIGENLWEESHSL-AKSYSEYREQELNYDRKRISTR-TVTLNLKQKGF 747
            D  +  I + C    N  E+  ++      E   +E    +K +ST+  + L +K  GF
Sbjct: 327 KDITE--IIEACFRKPNEGEKVKAMNCTQMLELISKEYPSLKKTVSTKVHLGLAMKDLGF 384

Query: 748 I 748
            
Sbjct: 385 E 385


>gi|255722075|ref|XP_002545972.1| ATPase family AAA domain-containing protein 1-A [Candida tropicalis
           MYA-3404]
 gi|240136461|gb|EER36014.1| ATPase family AAA domain-containing protein 1-A [Candida tropicalis
           MYA-3404]
          Length = 364

 Score = 43.3 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 86/314 (27%), Gaps = 45/314 (14%)

Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL--------- 495
              KE+   +            +E            +++D     V + L          
Sbjct: 69  PHLKEVSFNQYEKALLNSLVTPEEISVTFEDIGGLHDIIDELREAVILPLTEPELFAAHS 128

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKANPSL 553
              ++ + +   G  G GK+ L   I    G  ++    +S + +      +   A  SL
Sbjct: 129 SLIQSPKGVLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSSIMDKWYGESNKITDAIFSL 188

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
              +   I+ I E +      ++   +++    + A         +S          N+ 
Sbjct: 189 ANKLQPCIIFIDEIDSFLRDRSSTDHEVSA--MLKAEFMTLWDGLKSNGQIMVLGATNRK 246

Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
               + D+A+ RR       K  A        K +           LK  K    +  D+
Sbjct: 247 ---NDIDEAFLRRM-----PKTFA------IGKPDASQRTSILNKILKDAK-LDEQDFDL 291

Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR------EQELN 727
              E  +        G+D     + + C   E          K    Y+      +   N
Sbjct: 292 ---ETIVANTRGY-SGSD-----LREMCR--EAAIIPVREYIKENYNYKSGKLSRDDNDN 340

Query: 728 YDRKRISTRTVTLN 741
              + + T      
Sbjct: 341 LPVRPLRTSDFVKT 354


>gi|212535938|ref|XP_002148125.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium
           marneffei ATCC 18224]
 gi|210070524|gb|EEA24614.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium
           marneffei ATCC 18224]
          Length = 321

 Score = 43.3 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 18/208 (8%)

Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC--VGM 492
              LE          + +      P    +        +      +EV++   +   +  
Sbjct: 103 TYKLEKMLPSSVDPLVSLMMVEKVPDSTYDMIGGLDQQIKEI---KEVIELGLKHPELFE 159

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
           +L  G    + + + G  G+GK+ L   + +   +   I    S+++Q    E  +    
Sbjct: 160 SL--GIAQPKGVLLYGPPGTGKTLLARAVAH-HADCKFIRVSGSELVQKYIGEGSRMVRE 216

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFI 608
           L  +       I   +E D I +++++  +GGD    R    L       E   +    +
Sbjct: 217 LFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEPTKNIKIIM 276

Query: 609 VPNKHLFVRNPDDAWWR--RY-IVIPFD 633
             N+   +   D A  R  R    I F 
Sbjct: 277 ATNRLDIL---DPALLRPGRIDRKIEFP 301


>gi|212535936|ref|XP_002148124.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium
           marneffei ATCC 18224]
 gi|210070523|gb|EEA24613.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium
           marneffei ATCC 18224]
          Length = 389

 Score = 43.3 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 18/208 (8%)

Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC--VGM 492
              LE          + +      P    +        +      +EV++   +   +  
Sbjct: 103 TYKLEKMLPSSVDPLVSLMMVEKVPDSTYDMIGGLDQQIKEI---KEVIELGLKHPELFE 159

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
           +L  G    + + + G  G+GK+ L   + +   +   I    S+++Q    E  +    
Sbjct: 160 SL--GIAQPKGVLLYGPPGTGKTLLARAVAH-HADCKFIRVSGSELVQKYIGEGSRMVRE 216

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFI 608
           L  +       I   +E D I +++++  +GGD    R    L       E   +    +
Sbjct: 217 LFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEPTKNIKIIM 276

Query: 609 VPNKHLFVRNPDDAWWR--RY-IVIPFD 633
             N+   +   D A  R  R    I F 
Sbjct: 277 ATNRLDIL---DPALLRPGRIDRKIEFP 301


>gi|307172984|gb|EFN64126.1| Fidgetin-like protein 1 [Camponotus floridanus]
          Length = 636

 Score = 43.3 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 45/413 (10%), Positives = 131/413 (31%), Gaps = 54/413 (13%)

Query: 254 SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY-- 311
           S +G +Y++ +     +  + ++  D  K++ +  S    +     + LL S  S+    
Sbjct: 114 SCKGRSYNDRDIEKIVN--NSKKNKDMPKEKISLQSQASSNQNSNKELLLKSNNSEQNIS 171

Query: 312 --------NKAMFSIYKKGHFLYTADTKAWYKK------------DKNNVYIWSLTLDKI 351
                   N +     ++      ++ ++ Y+             + N       +  + 
Sbjct: 172 TYFTNIHRNDSSSKHIQQNASKIQSNKQSCYQNLDKFVQKRPILSNNNTNDTIEGSYGRT 231

Query: 352 TASIMNFLVSMKEDVFD----LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
            +       +      D    + +   D+ ++++   +       +   ++    +STA 
Sbjct: 232 NSYAPKLKRAASPQSRDEDTKIGKNTFDSFRSARDELYIQEMKRNKSAPKKTLGGRSTAN 291

Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-PFVEGEPS 466
           S             + S++    + +   ++E  +      ++     +      +    
Sbjct: 292 SQFVCPFKRDKEKSMQSNTSLQNKAN-PEEVEDERLRNIDPDMIELIRSEIMESGKTITW 350

Query: 467 QEF--LDLVSGYFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
            +   L+ +      +EV+ +   R       G  +  + I   G  G+GK+ +   I  
Sbjct: 351 DDIAGLEYIKKIV--KEVVVFPMLRP--DIFTGLRRPPKGILFFGPPGTGKTLIGKCIAS 406

Query: 524 AFGNQYVINAEASDIMQ--NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
              + +   + +S   +      +  +A  ++ R+    +V I E +       + + Q 
Sbjct: 407 QSKSTFFSISASSLTSKWIGNGEKMVRALFAVARVHQPSVVFIDEID-------SLLTQR 459

Query: 582 TGGDCMTARLNYG------NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
           +  +  ++R          +  + S       +           D+A  RR +
Sbjct: 460 SETEHESSRRLKTEFLVQLDGATTSEDDRILIVGATNRPQ--ELDEAARRRLV 510


>gi|291435915|ref|ZP_06575305.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291338810|gb|EFE65766.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 200

 Score = 43.3 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 35/145 (24%), Gaps = 23/145 (15%)

Query: 3   VMQWKEQAKQAIHNGFKLIPLRLGD-KRPQ----RLGKWEEQLLSSEKIDKLPACGFGFV 57
             QW   +        + +PL     KR          W     +          G GFV
Sbjct: 50  RSQWVRYSD-------RKVPLSARSPKRSAASSTDPETWSSYSAAKR---STAGVGVGFV 99

Query: 58  CGVGEQPLYAFDIDSKDEKTANTFKDTFEILH---GTPIVRIGQKPKILIPFRMNKEGIK 114
                  L   D+D                +        + +      L  +      ++
Sbjct: 100 L-SPVDRLVCIDLDH--ALIGGVLAGWAREIVDRVPRTYIEVSPSGTGLHIWGYGT--VE 154

Query: 115 KKKTTESTQGHLDILGCGQYFVAYN 139
           + +     +  +++   G+Y     
Sbjct: 155 RGRRIRRGEASVEVYDRGRYITVTG 179


>gi|195661186|ref|YP_002117841.1| E1 [Tursiops truncatus papillomavirus 1]
 gi|165909219|gb|ABY73445.1| E1 [Tursiops truncatus papillomavirus 1]
          Length = 639

 Score = 43.3 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 22/210 (10%)

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
             +  +  +   + S E+M +        L G  K+   + + G   SGKS     +   
Sbjct: 429 DWRPIMKFLK--YHSVEIMPFLM-FFRRFLKGIPKSN-CLVLYGPANSGKSYFAMSLINM 484

Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTG 583
            G + + +  A            K++  L  L  G   ++   T    +     ++ +  
Sbjct: 485 LGGKVISHVNA------------KSHFWLQPLADGKIALLDDATPSTWDYMDTFLRNLLD 532

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDAS 642
           G+ ++    +              +  N ++           R   I F  P   +    
Sbjct: 533 GNTISLDTKHKAPLQIRSPP--LIVTTNYNVLENEKWKYLHSRIKQISFLNPCPLDCRGD 590

Query: 643 FAQKLETKYTLEAKK--WFLKGVKAYISKG 670
              KL  +      +  W    +   + +G
Sbjct: 591 PEIKLNNQNWKAFFEKCWARLSLDDLLEEG 620


>gi|695370|gb|AAC41735.1| thyroid receptor interactor [Homo sapiens]
 gi|1094810|prf||2106382A thyroid hormone receptor-interacting protein
          Length = 406

 Score = 43.3 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 78/262 (29%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 81  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250

Query: 570 NDEINAAKIKQMTGGDCMTARL----NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +GG     R            E+  +    +  N    +   D A  R
Sbjct: 251 IDSIGSSRLEGGSGGSSEVQRQMLELLNQLDGFEATKNIKVIMATN---RIDMLDSALLR 307

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327


>gi|452709|emb|CAA54352.1| NS-1 [Aleutian mink disease virus]
          Length = 641

 Score = 43.3 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 100/367 (27%), Gaps = 54/367 (14%)

Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW----- 333
             +  R+    ++   G   P      +    YNK          +L+  D         
Sbjct: 172 QDSDGRADNLKIWIEDGPTKPYKYFNKQTKQDYNKPTNLRDYTLIYLFNKDKITQEGMDG 231

Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED--------NNKNSKSPRF 385
           Y    N   I +LT  +  A    +L    + + D   + ED        +  +S + + 
Sbjct: 232 YYASGNGGIIDNLTNKERKALRKMYLDEQSQGILDEDIDWEDSQSAPKVTDQTDSATSKT 291

Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE-------------- 431
             +  ++    +  SK +      +     +   + LD    F                 
Sbjct: 292 GTSLVWKSCATKVTSKKEVAIPVKQPSKKMTSAQNTLDDLYMFGCFTPEDMILKMSDRYL 351

Query: 432 -----QDG--ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484
                 +G   ++         T            F E E  +  LD +     +E+   
Sbjct: 352 EMSLEPNGAQKINTLLHMNQVRTSSNLTAFECIIKFNEEEDEKPLLDTIKDMGLNEQ--- 408

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
           +  + +   L   +  +  +   G GG+GK+ L +LI  A  N  ++             
Sbjct: 409 HLKKVLCTILTKQSGKRGCVWFYGPGGTGKTLLASLICKAVVNYGMVTT----------- 457

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                N          I+   E            K +TGG  +          S      
Sbjct: 458 --SNPNFPWTDCGNRNIIWAEECGNIGNYVED-FKAITGGGDVKVDTKNKQPQS---IKG 511

Query: 605 TPFIVPN 611
           +  +  N
Sbjct: 512 SVIVTSN 518


>gi|14475581|emb|CAC17714.2| putative E1 protein [Human papillomavirus type 87]
          Length = 626

 Score = 43.3 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 19/178 (10%)

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
           F   +   L G  K    +   G   +GKS     +    G   +    ++         
Sbjct: 431 FMEALKHFLKGTPKKS-CLVFYGPSDTGKSMFCMSLLKYLGGAVISFVNST--------- 480

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
              ++  L  L+ ++I ++ +  +   +     ++ +  G+ M+    +     +     
Sbjct: 481 ---SHFWLSPLVDTKIGLLDDATQQCWVYMDTYLRTVLDGNTMSIDRKHK--TLQQLKCP 535

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDASFAQKLETKYTLEAK--KWF 659
              I  N ++   +       R +V PF      + +     KL  +         W 
Sbjct: 536 PLMITTNVNIEADDSLKYLRSRMVVFPFLHKCPLDSNGDPVYKLNNENWKSFFQRSWA 593


>gi|13541532|ref|NP_111220.1| hypothetical protein TVN0701 [Thermoplasma volcanium GSS1]
          Length = 180

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 78  ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137
                +      G P VR  +       +  N + +  +   ++  G  +     +Y + 
Sbjct: 8   DEQSTEWARERFGPPNVRSVRGA---HWYFRNTKNLPNESNKQTAVGIFEFHTTNKYALI 64

Query: 138 YNIHPKTKKEYTWTTP-PHRFKVEDTPLLSE 167
                 +  +Y W  P P    + D P L +
Sbjct: 65  PPSDHPSGTKYEWEKPLPTIGDLPDAPDLRD 95


>gi|39938802|ref|NP_950568.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721911|dbj|BAD04401.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 457

 Score = 43.0 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 82/280 (29%), Gaps = 40/280 (14%)

Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
           +    ++++ +  L++       N K           R+N  E                 
Sbjct: 160 LQTQENLQQQISHLNQALNYVEANQKRIEELKTQKEYRKNQTELKNLND--------FQL 211

Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475
            +T   L    +    Q  + +L+  + +  TK+    K     +      +E  DL++ 
Sbjct: 212 FLTDQKLAFEKQKKNLQTQLNNLKENKPLPNTKKQVTFK---DVYGMESEKEELEDLLTY 268

Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
           +  ++ ++++                +   + G  G+GK+ L   IK   G   V     
Sbjct: 269 FQTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFL---IKALCGEANVHFINL 314

Query: 536 SDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
               + R    G+    +             I+ I E    +  N +    ++ G     
Sbjct: 315 IP-SKFRQKYIGEGEKEVEKVWQEAENHDKTIIFIDEIEGLENRNDSN---ISSGGVNVI 370

Query: 590 RLN--YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
                  + ++ S          N    +   D A   R+
Sbjct: 371 NTLLDKLDGFNSSNKKIVLMGATNNLHKI---DTALRSRF 407


>gi|302519881|ref|ZP_07272223.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302428776|gb|EFL00592.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 194

 Score = 43.0 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 14/122 (11%)

Query: 28  KRPQRLGKWEEQLLSSEKIDKL-------PACGFGFVCGVGEQPLYAFDIDSKDEKTANT 80
           K P  +          E               G GFV       +   D+D   +     
Sbjct: 56  KVPVAVDGTVASSTDPETWSTYRAASASAAGAGLGFVL--DGDGVVCLDLDHALDDQGAA 113

Query: 81  F---KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137
               +   +    T + R      + +         + ++ T    G +++ G G+Y   
Sbjct: 114 LPWAQRILDDAGPTWVERSVSGEGLHVW--GTGALPRGRRITVDGGGSVELYGDGRYIAV 171

Query: 138 YN 139
             
Sbjct: 172 TG 173


>gi|39938879|ref|NP_950645.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721988|dbj|BAD04478.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 764

 Score = 43.0 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 84/283 (29%), Gaps = 36/283 (12%)

Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
                +    ++++ +F L++       N K           R+N  E    K       
Sbjct: 155 KEKDQLQTQENLQQQIFQLNQALNYVEANQKRIEELKTQKEYRKNQTELKNFKD------ 208

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
                 +T   L    +          L+  + +  TK+    K     +      +E  
Sbjct: 209 --FQLFLTDQKLAFEKQKKNLTIQFNHLKENKSLPHTKKQVTFK---DVYGMETEKEELE 263

Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
           DL++ +  ++ ++++                +   + G  G+GK+ L   IK   G   V
Sbjct: 264 DLLTYFHTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFL---IKALCGEANV 309

Query: 531 INAEASDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGG 584
                    + R    G+    +             I+ I E    +  N + I    G 
Sbjct: 310 HFINLIP-SKFRQKYIGEGEKEVDKVWQEAESHDKTIIFIDEIEGLENRNDSNI-SSGGV 367

Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
           + +   L+  + ++ S          N    +   D A   R+
Sbjct: 368 NVINTLLDKLDGFNSSNKKIVLMGATNNLHKI---DMALRSRF 407


>gi|183596365|ref|ZP_02958393.1| hypothetical protein PROSTU_00111 [Providencia stuartii ATCC 25827]
 gi|188023826|gb|EDU61866.1| hypothetical protein PROSTU_00111 [Providencia stuartii ATCC 25827]
          Length = 59

 Score = 43.0 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPIA 637
           GD + AR  YG    E  + F+  I+ N    +         RR  +IPF     
Sbjct: 1   GDIIVARQVYGKHEVEFQSQFSLVILGNHKHVIYEYVSTVCGRRMCLIPFAANFT 55


>gi|255690110|ref|ZP_05413785.1| primase C 2 family protein [Bacteroides finegoldii DSM 17565]
 gi|260624392|gb|EEX47263.1| primase C 2 family protein [Bacteroides finegoldii DSM 17565]
          Length = 625

 Score = 43.0 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKG 246
              S  PS     + + +     + + +   G +  NG +D W+ V  A+  E + + +G
Sbjct: 19  SNTSNTPSAYSNTSEDTRAKVERVLSLIEQKGIDITNG-YDNWLKVGFALTSEFQEAGRG 77

Query: 247 KEIARRWSKQGSTYDEENFNYKWDT 271
                R S+Q   Y   + + +++ 
Sbjct: 78  F--FHRVSRQNPEYKASDTDKQYNK 100


>gi|124514921|gb|EAY56432.1| putative Virulence-associated E [Leptospirillum rubarum]
          Length = 698

 Score = 43.0 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 68/233 (29%), Gaps = 43/233 (18%)

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
            V      G K    + + G  G  KS   + ++  FG+         D           
Sbjct: 410 AVARIYDPGAKLDTMVILEGDQGVRKS---SSLQTLFGD---------DWTAEMKATPDN 457

Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
            +     L+G   V  ++       +  +IK          RL Y    +  P       
Sbjct: 458 RDFE-ASLLGLWCVEFADLEGMGRADRNRIKMQLSTRADWIRLAYRRDPARYPRQSIFVS 516

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
             N + ++++P     RR+  +   K            LE       + W  + V  Y  
Sbjct: 517 TANDNDYLKDPTGG--RRFWPVRCGK----------IDLEALARDRGQLWA-EAVHRYQG 563

Query: 669 KGLDVDIPEVCLKAKEEERQGTDT----YQAW------------IDDCCDIGE 705
                ++PE     +E  R  +D+       W            + DC +I E
Sbjct: 564 GESWWEVPEQAKDEQEA-RYQSDSWEEIIAPWLAGRSEVTTTEILRDCLEILE 615


>gi|170581732|ref|XP_001895811.1| 26S protease regulatory subunit 8 [Brugia malayi]
 gi|158597104|gb|EDP35330.1| 26S protease regulatory subunit 8, putative [Brugia malayi]
          Length = 349

 Score = 43.0 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 91/289 (31%), Gaps = 24/289 (8%)

Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI-LD 437
             +  +      Y  +  +   K K   +    G         +D +S   G +  +  D
Sbjct: 3   KEELQQLHEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDLDKGIDINSITSGCRVALRAD 62

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVG 491
                KV P K   +        V     +    L     E +EV++           +G
Sbjct: 63  SYALHKVLPNKIDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALG 122

Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
           +A        + + + G  G+GK+ L   + +       I    S+++Q    E  +   
Sbjct: 123 IA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVR 175

Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPF 607
            L  +       I   +E D I +++++  +GGD    R    L       E+  +    
Sbjct: 176 ELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVI 235

Query: 608 IVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFAQKLETKYTL 653
           +  N+   +   D A  R  R    I F  P     A   +    K  L
Sbjct: 236 MATNRIDIL---DPALLRPGRIDRKIEFPAPDEKARADILKIHSRKMNL 281


>gi|281353352|gb|EFB28936.1| hypothetical protein PANDA_012053 [Ailuropoda melanoleuca]
          Length = 1365

 Score = 43.0 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
           +WI +  +           +   Y  Y +   N     +S       +K       +K  
Sbjct: 13  SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67

Query: 755 KIEKEWKSKRII--KGLKLKPAF 775
           ++    KSK  +   GL+ K AF
Sbjct: 68  RLGTRGKSKYPLPKCGLR-KKAF 89


>gi|256397870|ref|YP_003119434.1| Bifunctional DNA primase/polymerase [Catenulispora acidiphila DSM
           44928]
 gi|256364096|gb|ACU77593.1| Bifunctional DNA primase/polymerase [Catenulispora acidiphila DSM
           44928]
          Length = 223

 Score = 43.0 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 23/144 (15%)

Query: 30  PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89
           P R+  W          ++ P        G      +   ID  ++             +
Sbjct: 83  PSRVHSW---------WEEHPDSAILLPTGR----TFDV-IDVPEQAGCLALARL--ERN 126

Query: 90  GTPIVRIGQKPKILIPFRMNKEGIKKKK----TTESTQGHLDILGCG--QYFVAYNIHPK 143
           G  +  +   P   + F +     KK           +  LD++  G   + VA      
Sbjct: 127 GAALGPVAATPTRRLYFFVLPGTKKKIPEMLVRAGWGRAQLDLICHGEKGFVVAPPSRMG 186

Query: 144 TKKEYTWTTPPHRFKVEDTPLLSE 167
           T  +  W  PP        P  +E
Sbjct: 187 TGGQVQWARPPGESN-RWLPEAAE 209


>gi|2661071|gb|AAB88187.1| similar to 26S proteasome subunit p45 [Homo sapiens]
          Length = 280

 Score = 43.0 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 25/211 (11%)

Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKA 500
            K   +        V     +    L     E +EV++           +G+A       
Sbjct: 3   NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------Q 56

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
            + + + G  G+GK+ L   + +   +   I    S+++Q    E  +    L  +    
Sbjct: 57  PKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 115

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFV 616
              I   +E D I +++++  +GGD    R    L       E+  +    +  N+   +
Sbjct: 116 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 175

Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
              D A  R  R    I F  P  N +A   
Sbjct: 176 ---DSALLRPGRIDRKIEF--PPPNEEARLD 201


>gi|113460572|ref|YP_718636.1| phage DNA-polymerase or DNA-primase [Haemophilus somnus 129PT]
 gi|112822615|gb|ABI24704.1| possible phage DNA-polymerase or DNA-primase [Haemophilus somnus
           129PT]
          Length = 303

 Score = 43.0 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 10/123 (8%)

Query: 17  GFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76
              + P+ L  K      +W +   + + +      G  F+    + P    D+D+  E 
Sbjct: 38  KIPVSPITLSSKEWNLREQWGDFETAIDGLQNSGCDGLSFIL-TKDDPFICIDLDNVSED 96

Query: 77  TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFV 136
                 D          + I Q  + L  F         KK   +    +++    +   
Sbjct: 97  KKTFIDDF-----SNTYIEISQSGRGLHIFAKGS----IKKNFNNQIEKVEMYHENKCIA 147

Query: 137 AYN 139
              
Sbjct: 148 MTG 150


>gi|167518113|ref|XP_001743397.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163778496|gb|EDQ92111.1| predicted protein [Monosiga brevicollis MX1]
          Length = 994

 Score = 43.0 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
           D    WI +  ++ E       SL ++Y ++ E      ++  +       ++Q+     
Sbjct: 390 DIVA-WIHEHYELKEAACVLRSSLYENYVKFCE---LTSQEPTNAANFGKIIRQQ--FPQ 443

Query: 751 IKREKIEKEWKSKRIIKGLKLKP 773
           +K  ++    +SK    GL+LKP
Sbjct: 444 LKTRRLGTRGQSKYHYYGLRLKP 466


>gi|325578833|ref|ZP_08148880.1| serine/threonine protein phosphatase family protein [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159657|gb|EGC71789.1| serine/threonine protein phosphatase family protein [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 685

 Score = 43.0 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 41/257 (15%)

Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-----ILDLETGQKVKPTKELYITKSTG 457
           K+   S            L+D + R  G QD       LD +        +   +   T 
Sbjct: 148 KNEILSALKKGSKLDAYGLIDRNYRLDGVQDYLAWGETLDFDEFVTQPLNEYALLKSCTE 207

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
            P V      +F   ++G    E ++ Y  + +       ++    + I GV G+GK+  
Sbjct: 208 IPQVPSLQLDDF-AHIAGM--KEMMLTYLQQALK-----HHQKGVNLLIYGVPGTGKTEF 259

Query: 518 MNLIKYAFG--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
             L+  A G     +   ++   +         +  +   L G + ++I +  E D  N 
Sbjct: 260 AGLLAQALGISAYNITYMDSDGDIVKAEQRLNYSRLAQTLLNGKQALLIFDEIE-DVFNG 318

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV------RNPDDAWWRRYIV 629
           + +++                     A     +  N    +       + D A+ RR   
Sbjct: 319 SLMERSVAQKN--------------KAWTNQLLENNNVPIIWLSNSVNSIDAAFLRR--- 361

Query: 630 IPFDKPIANRDASFAQK 646
             FD      D     K
Sbjct: 362 --FDFVFEMPDLPLKNK 376


>gi|326437514|gb|EGD83084.1| hypothetical protein PTSG_12063 [Salpingoeca sp. ATCC 50818]
          Length = 942

 Score = 43.0 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
           R   DT   W+    ++      E   + K+Y        +  ++  +       +  +G
Sbjct: 290 RIDEDTVT-WLRANFELKTGFTVERRLVYKAY---CRHMQSMMQEPCNAAGFGKVI--RG 343

Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKP 773
              G+   ++     SK   +GL++KP
Sbjct: 344 VFPGVTSRRLGSRGHSKYHYEGLRIKP 370


>gi|296135617|ref|YP_003642859.1| Primase 2 [Thiomonas intermedia K12]
 gi|295795739|gb|ADG30529.1| Primase 2 [Thiomonas intermedia K12]
          Length = 751

 Score = 43.0 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 13/97 (13%)

Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY-DEEN 264
                 A L     +        W    MA       +    E    WS  G  Y   ++
Sbjct: 6   DTERARAALQAIPPDLPRED---WTRAGMAAK----AAGLALEDFTDWSANGGNYAGPKD 58

Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301
               W +F  + IG       T   L + HG    + 
Sbjct: 59  CASVWQSFKGDGIG-----PGTLFHLAFSHGWKDTRK 90


>gi|58581308|ref|YP_200324.1| hypothetical protein XOO1685 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425902|gb|AAW74939.1| phage-related protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 898

 Score = 43.0 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 22/180 (12%)

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKY 523
           ++L  +   F +  ++   T   G       +A           G  G+GK+TL+  +  
Sbjct: 523 DWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAGHKSFPFLEATGEAGAGKTTLLTFLWK 581

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII----SETNE--NDEINAAK 577
             G      ++       +  +AG+A  ++ ++ G  +V++    SE ++  +      +
Sbjct: 582 LLGR-----SDYEGFDPAKSSKAGRAR-AMGQVSGMPVVLLEADRSEPDKAHSKTFEWDE 635

Query: 578 IKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           +K   GG  +  R   N GN   E P   T  I  N  +   +  +A   R + + F +P
Sbjct: 636 LKDFFGGGTLATRGVRNGGNETYEPPFRGTIVITQNAAV---DASEAILTRIVKLHFKRP 692


>gi|84623236|ref|YP_450608.1| hypothetical protein XOO_1579 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84367176|dbj|BAE68334.1| phage-related protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 898

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 22/180 (12%)

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKY 523
           ++L  +   F +  ++   T   G       +A           G  G+GK+TL+  +  
Sbjct: 523 DWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAGHKSFPFLEATGEAGAGKTTLLTFLWK 581

Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII----SETNE--NDEINAAK 577
             G      ++       +  +AG+A  ++ ++ G  +V++    SE ++  +      +
Sbjct: 582 LLGR-----SDYEGFDPAKSSKAGRAR-AMGQVSGMPVVLLEADRSEPDKAHSKTFEWDE 635

Query: 578 IKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
           +K   GG  +  R   N GN   E P   T  I  N  +   +  +A   R + + F +P
Sbjct: 636 LKDFFGGGTLATRGVRNGGNETYEPPFRGTIVITQNAAV---DASEAILTRIVKLHFKRP 692


>gi|220930420|ref|YP_002507329.1| virulence-associated E family protein [Clostridium cellulolyticum
           H10]
 gi|220000748|gb|ACL77349.1| virulence-associated E family protein [Clostridium cellulolyticum
           H10]
          Length = 789

 Score = 42.6 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 18/183 (9%)

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                  V      G K    + + G  G+GKS+L+  +   +      +    +     
Sbjct: 500 RKMLIAAVKRLYEPGCKFDYMLVLVGPQGAGKSSLLAKLGRKW-----FSDSLRNFENKE 554

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
             E          L G+ I  + E +   +    ++K          R+ Y    SE P 
Sbjct: 555 AGE---------HLQGAWIFELGELSAMKKSELEEVKAFLSKTEDRYRVAYDRQVSEFPR 605

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
               F   N H F+++P     RR+  +  D     R       L+ +   +     L  
Sbjct: 606 KCIFFGTTNNHNFLQDPTG--NRRFWPV--DVDPDKRKLDHWDYLKDEEIGQIWAEALTL 661

Query: 663 VKA 665
            KA
Sbjct: 662 YKA 664


>gi|325926124|ref|ZP_08187485.1| hypothetical protein XPE_1449 [Xanthomonas perforans 91-118]
 gi|325543469|gb|EGD14891.1| hypothetical protein XPE_1449 [Xanthomonas perforans 91-118]
          Length = 871

 Score = 42.6 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 22/190 (11%)

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSG 513
                     ++L  +   F +  ++   T   G       +A           G  G+G
Sbjct: 486 IQRDADAFRADWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAGHKSFPFLEATGEAGAG 544

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII----SETNE 569
           K+TL+  +    G      ++       +  +AG+A  ++ ++ G  +V++    SE ++
Sbjct: 545 KTTLLTFLWKLLGR-----SDYEGFDPAKSSKAGRAR-AMGQVSGMPVVLLEADRSEPDK 598

Query: 570 --NDEINAAKIKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
             +      ++K   GG  +  R   N GN   E P   T  I  N  +   +  +A   
Sbjct: 599 AHSKTFEWDELKDFFGGGTLATRGVRNGGNETYEPPFRGTIVITQNAAV---DASEAILT 655

Query: 626 RYIVIPFDKP 635
           R + + F +P
Sbjct: 656 RIVKLHFKRP 665


>gi|293400003|ref|ZP_06644149.1| putative virulence-associated protein E [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306403|gb|EFE47646.1| putative virulence-associated protein E [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 792

 Score = 42.6 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 68/204 (33%), Gaps = 18/204 (8%)

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
              FT  V    + G K      + G  G GKS     I    G+    +   + I    
Sbjct: 500 RKAFTAAVARIFMPGCKYDYMPVLVGKQGIGKS----HILSVMGD-VWFSDSITTISGKE 554

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
             EA         L GS IV ++E     +     IKQ         R  Y    S++P 
Sbjct: 555 GYEA---------LHGSWIVEMAELTATRKQEVESIKQFISKREDRYRKAYARRVSDNPR 605

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
               F   N + F+R+      RR+  +  D     R  S    L  +   +     +  
Sbjct: 606 QCVFFGTTNDNEFLRDYTG--NRRFWPVDTDA--DKRTKSIFHDLTCEIRDQLWAEAVMR 661

Query: 663 VKAYISKGLDVDIPEVCLKAKEEE 686
            K++    L+  + +  L+ +E+ 
Sbjct: 662 FKSHEPLFLESKLEQEALEMQEKY 685


>gi|154337848|ref|XP_001565150.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134062197|emb|CAM36585.1| putative mitochondrial DNA primase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 534

 Score = 42.6 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 12/116 (10%)

Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV---------- 236
           D     P          +    E  +       E   G    WI + +            
Sbjct: 352 DSNEGTPLPPQVLLPRTEKEAIESASRWLRQATEVEVGEWRTWIGLGLCAFRVAYHFRNA 411

Query: 237 HHETRGS-SKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
            +  R + ++  +     S++    +       +W  F+ E +G  A   + +  L
Sbjct: 412 KNLPRPAMAEMLDAWTEASRKCPLKFHNGECEARWAAFNPERLGHNADWWTAYKRL 467


>gi|260777438|ref|ZP_05886332.1| MoxR-like ATPase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607104|gb|EEX33378.1| MoxR-like ATPase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 554

 Score = 42.6 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 94/324 (29%), Gaps = 40/324 (12%)

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           E  D    C+  AL G       + + G  G  KS +   +  AF N    +     + +
Sbjct: 32  EREDTIKMCLLAALAGE-----SVFLLGPPGIAKSLIAKRLIQAFDN---SSYFEYLMTR 83

Query: 541 NRPPEAGKANPSLIRLM--GSRI---------VIISETNENDEINAAKIKQMTGGDCMTA 589
              PE      S+  L   G  +           +   +E  +   A +  +     +  
Sbjct: 84  FSTPEEVFGPLSIQELKDNGRYLRLTEGYLPTAQVVFLDEIWKAGPAILNTLL---TVVN 140

Query: 590 RLNYGNTY-SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA------- 641
              + N    E           N+     +  +A + R +V  F   I N+         
Sbjct: 141 EKTFKNGSDVERVPMRLLVSASNELPDEDSGLEALYDRMLVRIFVNRIQNKQNFKSMLTV 200

Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
              Q+ +    L       +    + S+   +++ +   +   E ++        ++   
Sbjct: 201 GTPQEAQIPEGLAITD---EEYHLWQSELEKLELSDEVFEKLYELKEM-------LEQSA 250

Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
             G  +      +  S   +++               ++N      +        E    
Sbjct: 251 TEGMGVDVSDTDMYVSDRRWKKAVKLLKASAYFNGRDSVNPLDLLLLQDCLWNSPESREV 310

Query: 762 SKRIIKGLKLKPAFESVDDNSNII 785
            +R++K   LK AF+  +    I 
Sbjct: 311 VQRVVKEFALKQAFDQQEVEQQIS 334


>gi|186686101|ref|YP_001869297.1| virulence-associated E family protein [Nostoc punctiforme PCC
           73102]
 gi|186468553|gb|ACC84354.1| virulence-associated E family protein [Nostoc punctiforme PCC
           73102]
          Length = 761

 Score = 42.6 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 50/210 (23%), Gaps = 28/210 (13%)

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
           V+ +    V  A   G      I   G  G GKS         +G  Y            
Sbjct: 467 VLRFLIASVARAYDPGCYLDNVILFYGEQGLGKSKFFE---DLYGKDYYATLPNET---- 519

Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNE-NDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
                   N  +          I E    + + + A+IK          R  Y  +    
Sbjct: 520 ------GDNDIVAACKSVWCGEIGEWERFSSKKSQAEIKTFITKPKDVMRKYYTQSSINI 573

Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
              F  F   N    +++      RRY V               +    K         +
Sbjct: 574 LRRFVLFGTTNHKDILKDTTG--NRRYWVC-------EITKELDRDWVAKNRDFIWAEAI 624

Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
              +    +   ++  E   +  ++     
Sbjct: 625 AAYRN--KEKWWLNKTE---ELAQKYHNEN 649


>gi|186474383|ref|YP_001863354.1| ATPase central domain-containing protein [Burkholderia phymatum
           STM815]
 gi|184198342|gb|ACC76304.1| AAA ATPase central domain protein [Burkholderia phymatum STM815]
          Length = 355

 Score = 42.6 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 27/210 (12%)

Query: 476 YFESEEVMDYFTRCVGMA------LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
            F  E     F   +  A      +  G  ++  + + G  G+GK+ L   I    G ++
Sbjct: 71  IFLDELGRSAFEAFLADATHFDKLVAQGIASRLALMLSGPPGTGKTLLAGHIAAHLGRKF 130

Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII-----SETNENDEINA-AKIKQMTG 583
            +    S I       A         + G   V+      +     D+ N   ++K++  
Sbjct: 131 YVVRLDSVISSLLGDTAKNIRSIFDFVAGKNAVLFLDELDAIAKMRDDRNELGELKRVVN 190

Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
                              S       N    +   D A WRR+   P+       +   
Sbjct: 191 TVI--------QGIDSLEPSAIVIAATNHAQML---DTAIWRRF---PYKISFGAPEYDL 236

Query: 644 AQKLETKYTLEAKKWFLKG-VKAYISKGLD 672
            Q L   +  +   + +   + A +S+GL+
Sbjct: 237 RQALWFHFLGDDPAYEVASRMLALLSEGLN 266


>gi|452598|emb|CAA54355.1| NS-1 [Aleutian mink disease virus]
          Length = 641

 Score = 42.6 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 19/160 (11%)

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
             F E E  +  L  +     +E+   Y  + +   L      +  I   G GG+GK+ L
Sbjct: 385 IKFNEEEDDKPLLATIKDMGLNEQ---YLKKVLCTILTKQGGKRGCIWFYGPGGTGKTLL 441

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            +LI  A  N  ++                  N          I+   E           
Sbjct: 442 ASLICKATVNYGMVTT-------------SNPNFPWTDCGNRNIIWAEECGNLGNWVED- 487

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
            K +TGG  +           +S               V 
Sbjct: 488 FKAITGGGDVKVDTKNKQP--QSIKGCVIVTSNTNITKVT 525


>gi|107027183|ref|YP_624694.1| hypothetical protein Bcen_4842 [Burkholderia cenocepacia AU 1054]
 gi|105896557|gb|ABF79721.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
          Length = 615

 Score = 42.6 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
                    +  W+ +  AV H       G E+   WS+     D  +    W +
Sbjct: 15  ALATIPADDYTTWVDMAFAVKH--GLGEAGFELWDAWSQTAPNCDARSARATWRS 67


>gi|330015978|ref|ZP_08308366.1| ATPase, AAA family [Klebsiella sp. MS 92-3]
 gi|328529848|gb|EGF56739.1| ATPase, AAA family [Klebsiella sp. MS 92-3]
          Length = 394

 Score = 42.6 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 18/144 (12%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
              R     G  G GK+     +       + I    + +             +L     
Sbjct: 145 SPTRSAIFVGPPGVGKTLTAAWLAKQLNVPFYILDLTAVMSSYLGKSGNNLRAALDYAKK 204

Query: 559 SRIVIISET------NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
              V++ +         +D+ +  ++K++                 E P +       N 
Sbjct: 205 KPCVLLLDEIDSIAKKRSDDSDIGELKRLVT--------VILQEVDEWPTNSLLLAATNH 256

Query: 613 HLFVRNPDDAWWRRY-IVIPFDKP 635
              +   D A WRR+ +++ F+KP
Sbjct: 257 EELI---DPALWRRFDMIVNFEKP 277


>gi|160889698|ref|ZP_02070701.1| hypothetical protein BACUNI_02125 [Bacteroides uniformis ATCC 8492]
 gi|156860690|gb|EDO54121.1| hypothetical protein BACUNI_02125 [Bacteroides uniformis ATCC 8492]
          Length = 506

 Score = 42.6 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 16/187 (8%)

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA-FGNQYVINAEASDIMQNR 542
            +    +   L         +   G  G  K+T M  +        + + + +  + ++ 
Sbjct: 231 KWLVATIASLLDTKVVNHEILVFIGKQGIYKTTWMQRLLPVELQRYFYVKSNSRRVSKD- 289

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                     L  L    +V + E  E      +++K +TG   +  R  YG+     P 
Sbjct: 290 ---------DLFTLTEFALVCLEELEEMTSAQVSQLKAITGMTDVNERAAYGHFKESRPH 340

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
             +     N   F+ +      RR+  +PF+    +    +       Y      W   G
Sbjct: 341 IASFCGTSNNVTFLNDLSG--NRRW--LPFEVDSIDSPFDYPIDYARVYAQGYALWK-SG 395

Query: 663 VKAYISK 669
              +  +
Sbjct: 396 FHYWFEQ 402


>gi|186681247|ref|YP_001864443.1| virulence-associated E family protein [Nostoc punctiforme PCC
           73102]
 gi|186463699|gb|ACC79500.1| virulence-associated E family protein [Nostoc punctiforme PCC
           73102]
          Length = 526

 Score = 42.6 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 76/290 (26%), Gaps = 39/290 (13%)

Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444
           F  +     ++ +  +  K   +      +  +  + + +    +G     ++++ G   
Sbjct: 139 FLKSRRRDFESRKGFNPMKEILEEYHKDFVKPVAMEEVATEDEEIGF----IEVKKGDIR 194

Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLV---SGYFESEEVMDYFTRCVGMALLGGNKAQ 501
           +  ++          F       E   L+   S     + +  +       A+  G K  
Sbjct: 195 RWDEQ---------VFTPFPQWDELSSLLFGTSDPLHQKMLEVFLIGAASRAVNPGKKLD 245

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
             + ++   G  K++    +    G  +V   E   +   R  + G     L  L G   
Sbjct: 246 TILVLKSDQGLAKTSFFRALG---GEYFVSIDEIESVETTRLLQKGWIG-ELGELEGIT- 300

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
                     + +   +K     +    R                F        +     
Sbjct: 301 ---------SKADVNALKNWATKEEDPLRRMNTED-IPFRPRHIAFGGTCNSEEILKDTT 350

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
              RR+ +IP  K I             ++              YI  G+
Sbjct: 351 G-NRRFNIIPVTKEIP-------LDWFRQHRAHILAAAYHKYNEYIKAGI 392


>gi|72388950|ref|XP_844770.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62176057|gb|AAX70178.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70801304|gb|AAZ11211.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
 gi|261328017|emb|CBH10994.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 335

 Score = 42.6 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 58/200 (29%), Gaps = 23/200 (11%)

Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL------GGN--KAQRFIHIRGVGGS 512
            +    +E           E+V       V           G       + I + G  G+
Sbjct: 68  EDVMDVEEINATFDDVGGLEDVKKALIEHVKWPFTRPELFEGNTLRSHPKGILLYGPPGT 127

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKANPSLIRLMGSRIVIISETNEN 570
           GK+ +   +    G  ++     S   +      +   A  +L   +   ++ + E +  
Sbjct: 128 GKTLIARALARELGCAFINVRTESLFSKWVGDTEKNAAAVFTLAAKLSPCVIFVDEIDAL 187

Query: 571 DEINAAKIKQMTGGDCMTARLNYG---NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
             +       +       A+  +    +   +  +        N+ L +   D+A  RR 
Sbjct: 188 LGLR----NSVDAAPHNNAKTIFMTHWDGVVQKKSKIVVIGATNRPLAI---DEAIRRRL 240

Query: 628 IVIPFDKPIANRDASFAQKL 647
              P    +   D +  +K+
Sbjct: 241 ---PLQLEVPPPDITGRRKI 257


>gi|123206408|ref|XP_001284920.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121847390|gb|EAX71990.1| conserved hypothetical protein [Trichomonas vaginalis G3]
          Length = 148

 Score = 42.6 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 12/151 (7%)

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           +K +           Y +       +    +  N         D   RRY+V+       
Sbjct: 2   LKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSH 57

Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695
            +D  +   L    T +                 +   IP    + ++   +   +    
Sbjct: 58  MQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--HTEERQTLLEANKSVYEL 115

Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
           +ID+     + +  +  SL  SY +Y ++  
Sbjct: 116 FIDE----TDFVSLDERSLYDSYKQYCQEYG 142


>gi|167580988|ref|ZP_02373862.1| virulence-associated E family protein [Burkholderia thailandensis
           TXDOH]
          Length = 838

 Score = 42.6 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 47/184 (25%), Gaps = 20/184 (10%)

Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFE---SEEVMDYFTRCVGMA----LLGGNKAQRFIHI 506
           K       + + +       S +      E                 L  G        +
Sbjct: 506 KDAALALPQWDKTPRLDTFFSDFAGAPSDEATRLTGCLLFAGIIMRQLRPGAPCPVVPVL 565

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G GG+GKS  +  +    G        A     +       +  ++  L         E
Sbjct: 566 IGKGGTGKSRFVQQLAEVLGFP---PPPAISFSDDIRMTMAASVSAIAEL--------GE 614

Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
            +   + +   +K  T       R  Y       P  F      NKH   R+      RR
Sbjct: 615 MSGMAKRDMDDVKMWTTECQDVYRGPYERRAESHPRRFVLIGTANKHELNRDETG--NRR 672

Query: 627 YIVI 630
           ++ I
Sbjct: 673 FMPI 676


>gi|50547977|ref|XP_501458.1| YALI0C05038p [Yarrowia lipolytica]
 gi|49647325|emb|CAG81759.1| YALI0C05038p [Yarrowia lipolytica]
          Length = 626

 Score = 42.6 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
             +      +E+M    R V     G       I   G  G GK+TL  ++    GN++V
Sbjct: 132 QTLDDISGQKELMAVLRRFVAY---GRIP---SIIFWGPPGVGKTTLARILAKTSGNRFV 185

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
             +   + + +      +AN     L    I+ I E +   +     +        +T
Sbjct: 186 ELSATQNNVADVKKVIDQANNEWKLLKRGTILFIDELHRFSKAQQDVLLPAVEKGDIT 243


>gi|218281359|ref|ZP_03487837.1| hypothetical protein EUBIFOR_00402 [Eubacterium biforme DSM 3989]
 gi|218217451|gb|EEC90989.1| hypothetical protein EUBIFOR_00402 [Eubacterium biforme DSM 3989]
          Length = 479

 Score = 42.2 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 56/383 (14%), Positives = 115/383 (30%), Gaps = 29/383 (7%)

Query: 104 IPFRMNKEGI--KKKKTTESTQGHLDILGCGQ--YFVAYNIHP--KTKKEYTWTTPPH-R 156
             +    +G    ++     T G+++I   G+        IH    T K++   T  +  
Sbjct: 87  YYYSDLPKGFQITQQFHPIGTNGYVEIDVDGKKKQIRIERIHMEEDTAKQFHKETGTYID 146

Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKS---IIPSKTWTNNNNRQYTNREITAF 213
           F    TPL+       +    +         K      +        + R   N  ++  
Sbjct: 147 FNRAGTPLIEIVSKPDMHSAKEAAAYVETLRKNLLYLNVSDVKMEEGSMRCDVNISLSKD 206

Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE----------E 263
               G +    + +    V  AV  E    S   +   +  +    YDE          +
Sbjct: 207 KDTLGTKTEIKNLNSIANVQKAVQAEIERQSALLDAGEKVEQATRRYDEAQKTTILMRKK 266

Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA----SRFSDAYNKAMFSIY 319
             N  +  F    I           S+  +  +L    L         S+     + S  
Sbjct: 267 EGNVDYKYFPEPNIFPIQLDLDWVKSIQDNLEELPDARLARFMKDYELSEYDASVLVSDR 326

Query: 320 KKGHFLYTADTKAWYKKDKNNVYIWS-LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
           +   F         + K   N  I                +    E++  L    E    
Sbjct: 327 EMADFFEEVLKSTKFAKKACNWVIGDVSAYLNKNNLNFKNVPCSSENLASLINVIEAGEI 386

Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL-GEQDGI-- 435
           + K  +  F    + ++ ++  + K   Q  + G+I +I + +LD++ + +   ++G   
Sbjct: 387 SGKQGKVVFEEVMQGKDPKKVIEEKGMKQVSDDGAILAIVNSVLDANPQSIEDFKNGKDR 446

Query: 436 -LDLETGQKVKPTKELYITKSTG 457
            +    GQ +K ++     K T 
Sbjct: 447 AVGFLVGQVMKASRGQANPKRTN 469


>gi|331090254|ref|ZP_08339141.1| hypothetical protein HMPREF1025_02724 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330401873|gb|EGG81448.1| hypothetical protein HMPREF1025_02724 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 797

 Score = 42.2 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 74/262 (28%), Gaps = 26/262 (9%)

Query: 463 GEPSQEFLDLVSGYFESEEV-------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
            +       L+  Y  +E                V      G K    + + G  G GKS
Sbjct: 462 WDGCSRIDSLLIDYMGAENTPYVRAVTRKTLVAAVARIYEPGIKFDSVLVLNGPQGCGKS 521

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
           T    +       Y  +   SD+   +            +L G  ++ + E     +++ 
Sbjct: 522 TFFAKLGK---EWYSDSLTISDMKDGKTAAE--------KLQGYWLLELGELAGIKKVDV 570

Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH-LFVRNPDDAWWRRYIVIPFDK 634
             +K          R +YG T    P         N    F+R+      RR+    +  
Sbjct: 571 ETVKSFVTRTDDKYRQSYGTTVESHPRECVIVGSTNSEGGFLRDVTG--NRRF----WPV 624

Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
            +  +       L  +   +     +   K      L          A++E    +D  +
Sbjct: 625 HVTGKGKHRGWDLTPETVDQIWAEAISIYKDGEELYLKGKEAAEAYVAQQE-AMESDERE 683

Query: 695 AWIDDCCDIGENLWEESHSLAK 716
             ++D  +       ++  L +
Sbjct: 684 GIVEDYLERLLPADWDTMDLYQ 705


>gi|193709132|ref|XP_001943740.1| PREDICTED: 26S protease regulatory subunit 8-like [Acyrthosiphon
           pisum]
          Length = 408

 Score = 42.2 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 104/342 (30%), Gaps = 40/342 (11%)

Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK--------N 379
            +   + + D+N+           T  I   L+ + E   +L       N+         
Sbjct: 3   PNPPEFMEVDQNSGSRGDGFKSYYTTKIEELLLVVAEKSMNLRRLQAQRNELNAKVRLLR 62

Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439
            +         Y  + V+   K K   +    G         +D +       +  + L 
Sbjct: 63  EELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDV---TPNCRVALR 119

Query: 440 TGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRC 489
                       K   +        V     +    L +   E +EV++           
Sbjct: 120 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPELFDA 179

Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
           +G+A        + + + G  G+GK+ L   + +       I    S+++Q    E  + 
Sbjct: 180 LGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRM 232

Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFT 605
              L  +       I   +E D I +++I+  +GGD    R    L       E+  +  
Sbjct: 233 VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK 292

Query: 606 PFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
             +  N+   +   D A  R  R    I F  P  N +A + 
Sbjct: 293 VIMATNRIDIL---DTALLRPGRIDRKIEF--PPPNEEARWD 329


>gi|329723890|gb|EGG60417.1| Virulence-associated protein E [Staphylococcus epidermidis VCU144]
          Length = 495

 Score = 42.2 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 94/365 (25%), Gaps = 57/365 (15%)

Query: 316 FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED 375
                K   L   D    Y  + ++    S      T   +    +  E + +  E  + 
Sbjct: 1   MEDVTKEEVLELIDENN-YLANSDDWR--SKLRRSATTQALKKTTANAELIMENDESLKG 57

Query: 376 NNKNS--KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
             +    +         Y R N + N        +     I    +              
Sbjct: 58  LVQYDSFEKITKLKRLPYWRTNDDNNYYWADIDTTHVISHIDRYYNVQFSRDIM------ 111

Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-------VMDYF 486
                ++  + +     +    +       + ++    L   Y  +E+          + 
Sbjct: 112 -----DSVIEKEAYHNKFHPIKSMIESKTWDGNKRIETLFIDYLGAEDNHYNREVTKKWM 166

Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
              V      G K    I + G  G GKST    +    G+ Y  + +            
Sbjct: 167 MGAVARIYHPGIKYDSMIILYGGQGDGKSTT---VSKLGGHWYNQSLKTF---------- 213

Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
            K + S  ++ GS +  I E     +     IK          R +YG      P     
Sbjct: 214 -KGDESYKKIQGSWLCEIEELAAFQKSTIEDIKSFISAIVDIYRASYGKRIERHPRQCVF 272

Query: 607 FIVPNKHLFVRNPDDAWWRRYIVI----------PFD--------KPIANRDASFAQKLE 648
               N + F+++      RR+  I          PFD        +  A     F     
Sbjct: 273 IGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTQDIVQQMFAEAKVYFDDDPT 330

Query: 649 TKYTL 653
            K  L
Sbjct: 331 DKALL 335


>gi|322819222|gb|EFZ26407.1| hypothetical protein TCSYLVIO_7416 [Trypanosoma cruzi]
          Length = 929

 Score = 42.2 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
           +D+C  +  +      SL +++  + ++ +  D   +        L       G   E  
Sbjct: 110 VDECLQMSPDA-TSLRSLYEAFVSFCKEYVLMDTTGMKNMPFYGEL-----NVGPGYEHY 163

Query: 757 EKEWKSKRIIKGLKLKPAFESV 778
           ++  K KR    L ++  FE V
Sbjct: 164 DRRLKRKRHW--LAIRHRFEDV 183


>gi|300775982|ref|ZP_07085841.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300505115|gb|EFK36254.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 412

 Score = 42.2 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 20/205 (9%)

Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTL 517
           P          L  +   F   E ++     + + L    +       +     +GKST 
Sbjct: 91  PEDLENKIPFSLKFMEHIFG--EQLELGLDYIKILLEHPTQILPILCLVSKERATGKSTF 148

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
           +  +K  FG         + I  +       ++ + +      IV I E   + +    +
Sbjct: 149 IKWLKSIFG------LNMTYIKGDSFSSQFNSDWTSM-----LIVAIDEVFFDKKEITER 197

Query: 578 IKQMTGGDCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
           +K ++  D         +    E    F      N+  F++  ++    R+ +I   K I
Sbjct: 198 LKYLSTTDKDKKEAKGKDREEVEFFGKFILC-SNNEDNFIQIDENEI--RFWIIK-VKSI 253

Query: 637 ANRDASFAQKLETKYTLEAKKWFLK 661
            + +  F + L  K      ++ ++
Sbjct: 254 KSENTEFLKNLN-KEIPYFLRYLIQ 277


>gi|39938812|ref|NP_950578.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721921|dbj|BAD04411.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 516

 Score = 42.2 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 84/278 (30%), Gaps = 36/278 (12%)

Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
           +    ++++ +  L++       N K           R+N  E                 
Sbjct: 160 LQTQENLQQQISHLNQALNYVEANQKRIEELKTQKEYRKNQTELKNLND--------FQL 211

Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475
            +T   L    +    Q  + +L+  + +  TK+    K     +      +E  DL++ 
Sbjct: 212 FLTDQKLAFEKQKKNLQTQLNNLKENKPLPNTKKQVTFK---DVYGMESEKEELEDLLTY 268

Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
           +  ++ ++++                +   + G  G+GK+     IK   G   V     
Sbjct: 269 FQTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFF---IKALCGETNVHFINL 314

Query: 536 SDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
               + R    G+    +             I+ I E    +  N + I    G + +  
Sbjct: 315 IP-SKFRQKYIGEGEKEVEKVWQEAENHDKTIIFIDEIEGLENRNDSNI-SSGGVNVINT 372

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
            L+  + ++ S          N    +   D A   R+
Sbjct: 373 LLDKLDGFNSSNKKIVLMGATNNLHKI---DSALRIRF 407


>gi|242064454|ref|XP_002453516.1| hypothetical protein SORBIDRAFT_04g007170 [Sorghum bicolor]
 gi|241933347|gb|EES06492.1| hypothetical protein SORBIDRAFT_04g007170 [Sorghum bicolor]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 89/317 (28%), Gaps = 37/317 (11%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
            I    +             ++  + N++                 V E  K    ++ L
Sbjct: 42  HIHDLQLQIRQKTHNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEVVKVMGKSKVL 101

Query: 410 EAGSIFSITSDLLDSSSRF--------LGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
                       LD S           +  ++    L      K    + + K    P  
Sbjct: 102 VKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMKVEKVPDS 161

Query: 462 EGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
             +        +      +EV++           +G+A        + + + G  G+GK+
Sbjct: 162 TYDMIGGLDQQIKEI---KEVIELPIKHPELFESLGIA------QPKGVLLYGPPGTGKT 212

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
            L   + +   +   I    S+++Q    E  +    L  +       I   +E D I +
Sbjct: 213 LLARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 271

Query: 576 AKIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY- 627
           A+++  TG      +             E+       +  N+   +   D A  R  R  
Sbjct: 272 ARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL---DQALLRPGRID 328

Query: 628 IVIPFDKPIANRDASFA 644
             I F     N D+ F 
Sbjct: 329 RKIEFPN--PNEDSRFD 343


>gi|320352352|ref|YP_004193691.1| prophage antirepressor [Desulfobulbus propionicus DSM 2032]
 gi|320120854|gb|ADW16400.1| prophage antirepressor [Desulfobulbus propionicus DSM 2032]
          Length = 263

 Score = 42.2 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 692 TYQAWIDDCC--DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
           +   +++DC               + ++Y ++            ++R +   L+  G+  
Sbjct: 186 SLDGFLNDCTRAVPDPAPRLTLAEMHRAYRQWCLDHGLNQVNIATSRELAARLRDLGYTL 245

Query: 750 GIKREKIEKEWKSKR 764
                +I+    + R
Sbjct: 246 AKVGGRIQVFGLTVR 260


>gi|126461048|ref|YP_001042162.1| hypothetical protein Rsph17029_0272 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102712|gb|ABN75390.1| hypothetical protein Rsph17029_0272 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 238

 Score = 42.2 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 690 TDTYQAWIDDCCDIG--ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
           +D +  ++ + C     +     S +L  ++ E+  Q    D   ++       L     
Sbjct: 116 SDCWAVFLRERCSCTGRDEDRLPSTALISAFREWLLQRGEGDCGPVTASKALAALVPIWR 175

Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782
                R  +++        +GL  KPA  S D  S
Sbjct: 176 CAETGRS-LDRHKAGTTYYRGLAFKPASTSDDGAS 209


>gi|332800348|ref|YP_004461847.1| virulence-associated E family protein [Tepidanaerobacter sp. Re1]
 gi|332698083|gb|AEE92540.1| virulence-associated E family protein [Tepidanaerobacter sp. Re1]
          Length = 801

 Score = 42.2 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 22/178 (12%)

Query: 461 VEGEPSQEFLDLVSGYFESEE-------VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
            + +  +    ++  Y  +E+               V   +  G K    + + G  G G
Sbjct: 477 PKWDGVERLDRILIDYLGAEDSEYVRAVTRKTLVAAVARVMEPGIKFDYMLVLNGPQGIG 536

Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
           KSTL N +    G  +  +   +D+      E         +L G  IV I E     +I
Sbjct: 537 KSTLFNRLG---GEWFSDSLSIADMRDKTAAE---------KLQGYWIVEIGELAGIKKI 584

Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVI 630
           +   +K          R  YG    + P         NK   F+R+      RR+  +
Sbjct: 585 DEETLKSFLSRQDDKYRAAYGYAVEDHPRQCIIVGSTNKTTGFLRDLTG--NRRFWPV 640


>gi|316972496|gb|EFV56173.1| 26S protease regulatory subunit 8 [Trichinella spiralis]
          Length = 349

 Score = 42.2 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 66/212 (31%), Gaps = 25/212 (11%)

Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNK 499
           P K   +        V     +    L     E +EV++           +G       +
Sbjct: 71  PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALG------IE 124

Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
             + + + G  G+GK+ L   + +       I    S+++Q    E  +    L  +   
Sbjct: 125 QPKGVLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMARE 183

Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLF 615
               I   +E D I +++I   +G D    R    L       E+  +    +  N+   
Sbjct: 184 HAPSIIFMDEIDSIGSSRIDSNSGSDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 243

Query: 616 VRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
           +   D A  R  R    I F     +  A   
Sbjct: 244 L---DPALLRPGRIDRKIEFPA--PDEKARLD 270


>gi|158828259|gb|ABW81135.1| unknown [Capsella rubella]
          Length = 419

 Score = 42.2 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 94/325 (28%), Gaps = 39/325 (12%)

Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ--------NVEENSKAKSTA 406
           I      +++   +L+      N+ +   R         Q         V+   K K   
Sbjct: 40  IHEHQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLV 99

Query: 407 QSLEAGSIFSITSDLLD----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
           +    G         +D    + S  +  ++    L      K    + + K    P   
Sbjct: 100 KVHPEGKYVVDVDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDST 159

Query: 463 GEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
            +        +      +EV++           +G+A        + + + G  G+GK+ 
Sbjct: 160 YDMIGGLDQQIKEI---KEVIELPIKHPELFESLGIA------QPKGVLLYGPPGTGKTL 210

Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
           L   + +   +   I    S+++Q    E  +    L  +       I   +E D I +A
Sbjct: 211 LARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 269

Query: 577 KIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-I 628
           +++  +G      +             E+       +  N+   +   D A  R  R   
Sbjct: 270 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL---DQALLRPGRIDR 326

Query: 629 VIPFDKPIANRDASFAQKLETKYTL 653
            I F  P         +    K  L
Sbjct: 327 KIEFPNPNEESRFDILKIHSRKMNL 351


>gi|39939213|ref|NP_950979.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39722322|dbj|BAD04812.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 457

 Score = 42.2 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 85/278 (30%), Gaps = 36/278 (12%)

Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
           +    ++++ +F L++       N K           ++N  E    K            
Sbjct: 160 LQTQENLQQQIFQLNQALNYVEANQKRIEELKTQKEYQKNQTELKNFKD--------FQL 211

Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475
            +T   L    +       +  L+  + +  TK+    K     +      +E  DL++ 
Sbjct: 212 FLTDQKLSFEKQKKNLTTQLNHLKENKPLPYTKKQVTFK---DVYGMESEKEELEDLLTY 268

Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
           +  ++ ++++                +   + G  G+GK+ L   IK   G   V     
Sbjct: 269 FRTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFL---IKALCGEANVHFINL 314

Query: 536 SDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
               + R    G+    +             I+ I E    +  N + I    G + +  
Sbjct: 315 IP-SKFRQKYIGEGEKEVEKVWQEAENHDKTIIFIDEIEGLENRNDSNI-SSGGVNVINT 372

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
            L+  + ++ S          N    +   D A   R+
Sbjct: 373 LLDKLDGFNSSNKKIVLMGSTNNLHKI---DTALRSRF 407


>gi|242093492|ref|XP_002437236.1| hypothetical protein SORBIDRAFT_10g023320 [Sorghum bicolor]
 gi|241915459|gb|EER88603.1| hypothetical protein SORBIDRAFT_10g023320 [Sorghum bicolor]
          Length = 419

 Score = 42.2 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 26/220 (11%)

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY--- 485
           +  + G   L      K    + + K    P    +        +      +EV++    
Sbjct: 127 VALRSGSYMLHVILPSKVDPLVNLMKVEKVPNSTYDMIGGLDQQIKEI---KEVIELPIK 183

Query: 486 ---FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                  +G+A        + + + G  G+GK+ L   + +   +   I    S+++Q  
Sbjct: 184 HPELFESLGIA------QPKGVILYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKY 236

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYS 598
             E  +    L  +       I   +E D I +A+++    GD    R    L       
Sbjct: 237 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESSGSGDSEVQRTMLELLNQLDGF 296

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKP 635
           E+       +  N+   +   D A  R  R    I F  P
Sbjct: 297 EATNKIKVLMATNRIDIL---DQALLRPGRIDRKIEFPNP 333


>gi|308048185|ref|YP_003911751.1| ATPase AAA [Ferrimonas balearica DSM 9799]
 gi|307630375|gb|ADN74677.1| AAA ATPase central domain protein [Ferrimonas balearica DSM 9799]
          Length = 324

 Score = 42.2 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 63/250 (25%), Gaps = 41/250 (16%)

Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
               +S      A     I   L D+    +   +  L                  S   
Sbjct: 23  KRVTESLIADERAKKHHVIAERLEDALRT-ISVSNATL-------RPRDYGFSKIASLVD 74

Query: 459 PFVEGEP------SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
                        +    + ++     +   D        +L   N+    + + G  G+
Sbjct: 75  ERHPAIKLSELVLNPSITESINELIAEQSRADLLR---SYSLEPRNR----LLLIGPPGN 127

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET----- 567
           GK+++   +  A     ++      I       A      +      R V+  +      
Sbjct: 128 GKTSIAEALAEALMVPLIVVRYEGVIGSYLGETASNLKKVIEFASSRRCVLFFDEFDTLG 187

Query: 568 -NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
               D  +  ++K++     M             P+        N    +   D A WRR
Sbjct: 188 KERGDTHDTGEVKRVVSSLLMQIDSL--------PSHVVVVGATNHSELL---DRAVWRR 236

Query: 627 YIV---IPFD 633
           + +   +P  
Sbjct: 237 FQIRLEVPMP 246


>gi|315454005|ref|YP_004074275.1| hypothetical protein HFELIS_16010 [Helicobacter felis ATCC 49179]
 gi|315133057|emb|CBY83685.1| putative uncharacterized protein [Helicobacter felis ATCC 49179]
          Length = 542

 Score = 42.2 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 18/218 (8%)

Query: 463 GEPSQEFLDLVSGYFE---SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM- 518
           G        ++          +V D F   +   L           +    G+GK  L  
Sbjct: 208 GAKFPFIAGVIDNVLGAKNDSKVRDKFLHDLAYHLETFTPCFNLWLLLDKQGTGKGVLTS 267

Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
            ++   + ++   +  A         + G A   + RL      +    +++      ++
Sbjct: 268 QILMRLYSDEDNFSNVARLSGAEFTSKWGDA--FVNRLYLDIDEVEESLDKSGTTINQRV 325

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP------- 631
           K +        +L + +T  +        +  N+ +  +  D    RRY ++        
Sbjct: 326 KVIVANTRYAVQLKFRDTQ-QVENHAFIVMSSNEKMPFKI-DAGLNRRYNIVRGGGESLV 383

Query: 632 --FDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
             F +  AN D    + ++ K      ++  +    + 
Sbjct: 384 EMFPQISANHDDWLNKTID-KEMPYFLQFLAQIPLDFK 420


>gi|39938852|ref|NP_950618.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721961|dbj|BAD04451.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 516

 Score = 42.2 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 84/278 (30%), Gaps = 36/278 (12%)

Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
           +    ++++ +  L++       N K           R+N  E                 
Sbjct: 160 LQTQENLQQQISHLNQALNYVEANQKRIEELKTQKEYRKNQTELKNLND--------FQL 211

Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475
            +T   L    +    Q  + +L+  + +  TK+    K     +      +E  DL++ 
Sbjct: 212 FLTDQKLAFEKQKKNLQTQLNNLKENKPLPNTKKQVTFK---DVYGMESEKEELEDLLTY 268

Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
           +  ++ ++++                +   + G  G+GK+     IK   G   V     
Sbjct: 269 FQTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFF---IKALCGETNVHFINL 314

Query: 536 SDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
               + R    G+    +             I+ I E    +  N + I    G + +  
Sbjct: 315 IP-SKFRQKYIGEGEKEVEKVWQEAENHDKTIIFIDEIEGLENRNDSNI-SSGGVNVINT 372

Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
            L+  + ++ S          N    +   D A   R+
Sbjct: 373 LLDKLDGFNSSNKKIVLMGATNNLHKI---DSALRIRF 407


>gi|256078217|ref|XP_002575393.1| rfx5 [Schistosoma mansoni]
 gi|238660631|emb|CAZ31626.1| rfx5, putative [Schistosoma mansoni]
          Length = 1109

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
                  WI    +   +       +   Y  Y E+      K ++T      +K+    
Sbjct: 111 EQSQAYTWIMSHLEEDPSTCLRKDEVYDDYRAYCEKHHM---KTLNTADFGKVMKRA--F 165

Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPAFES 777
             +K  ++ +  +S+    G++ K   + 
Sbjct: 166 PNVKPRRLGQRGQSRYCYGGMRKKTEIQP 194


>gi|151573956|gb|ABS18274.1| non-structural protein 1 [Feline panleukopenia virus]
          Length = 668

 Score = 41.8 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 46/181 (25%), Gaps = 28/181 (15%)

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
            +   L      +  +   G   +GKS +   I  A G+    N             A  
Sbjct: 381 AIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGDVGCYN-------------AAN 427

Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
            N          ++ I E     +    + K +  G  +      G    +   +    +
Sbjct: 428 VNFPFNDCTNKNLIWIEEAGNFGQ-QVNQFKAICSGQTIRIDQK-GKGSKQIEPT-PVIM 484

Query: 609 VPNKHLFV--------RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
             N+++ +                 R + I     +   D     K   +       W +
Sbjct: 485 TTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPG-DFGLVDK---EEWPLICAWLV 540

Query: 661 K 661
           K
Sbjct: 541 K 541


>gi|326912145|ref|XP_003202414.1| PREDICTED: transcription factor RFX4-like [Meleagris gallopavo]
          Length = 790

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 118 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 172

Query: 755 KIEKEWKSKRIIKGLKLKPA 774
           ++    +SK    G+ +K  
Sbjct: 173 RLGTRGQSKYHYYGIAVKEN 192


>gi|224095383|ref|XP_002196607.1| PREDICTED: similar to winged-helix transcription factor RFX4
           [Taeniopygia guttata]
          Length = 747

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 75  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 129

Query: 755 KIEKEWKSKRIIKGLKLKPA 774
           ++    +SK    G+ +K  
Sbjct: 130 RLGTRGQSKYHYYGIAVKEN 149


>gi|118082811|ref|XP_416306.2| PREDICTED: similar to winged-helix transcription factor RFX4
           [Gallus gallus]
          Length = 784

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 112 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 166

Query: 755 KIEKEWKSKRIIKGLKLKPA 774
           ++    +SK    G+ +K  
Sbjct: 167 RLGTRGQSKYHYYGIAVKEN 186


>gi|52630927|gb|AAU84927.1| putative 26S protease regulatory subunit 8 [Toxoptera citricida]
 gi|326509375|dbj|BAJ91604.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 408

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 83/261 (31%), Gaps = 31/261 (11%)

Query: 400 SKAKSTAQSLEAGSIFSITS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKST 456
            K        E   +  I    D+ D +    +  ++    L      K    + +    
Sbjct: 84  KKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVE 143

Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVG 510
             P    E        +      +EV++           +G+A        + + + G  
Sbjct: 144 KVPDSTYEMVGGLDTQIKEI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPP 194

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
           G+GK+ L   + +       I    S+++Q    E  +    L  +       I   +E 
Sbjct: 195 GTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEI 253

Query: 571 DEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR- 625
           D I +++I+  +GGD    R    L       E+  +    +  N+   +   D A  R 
Sbjct: 254 DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DTALLRP 310

Query: 626 -RY-IVIPFDKPIANRDASFA 644
            R    I F  P  N +A + 
Sbjct: 311 GRIDRKIEF--PPPNEEARWD 329


>gi|332241694|ref|XP_003270013.1| PREDICTED: transcription factor RFX4 isoform 2 [Nomascus
           leucogenys]
          Length = 735

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 63  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136


>gi|327272328|ref|XP_003220937.1| PREDICTED: transcription factor RFX4-like [Anolis carolinensis]
          Length = 745

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 74  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 128

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 129 RLGTRGQSKYHYYGIAVKE 147


>gi|311255209|ref|XP_003126131.1| PREDICTED: transcription factor RFX4-like [Sus scrofa]
          Length = 1346

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 556 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 610

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 611 RLGTRGQSKYHYYGIAVKE 629


>gi|301784549|ref|XP_002927690.1| PREDICTED: transcription factor RFX4-like [Ailuropoda melanoleuca]
          Length = 750

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 78  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 132

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 133 RLGTRGQSKYHYYGIAVKE 151


>gi|297692825|ref|XP_002823732.1| PREDICTED: transcription factor RFX4-like isoform 2 [Pongo abelii]
          Length = 735

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 63  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136


>gi|297692823|ref|XP_002823731.1| PREDICTED: transcription factor RFX4-like isoform 1 [Pongo abelii]
          Length = 744

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 72  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145


>gi|297263423|ref|XP_001100097.2| PREDICTED: transcription factor RFX4-like isoform 4 [Macaca
           mulatta]
          Length = 738

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 63  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136


>gi|297458480|ref|XP_613459.5| PREDICTED: regulatory factor X4 isoform 2 [Bos taurus]
 gi|297474990|ref|XP_002687707.1| PREDICTED: regulatory factor X, 4 (influences HLA class II
           expression) isoform 1 [Bos taurus]
 gi|296487428|gb|DAA29541.1| regulatory factor X, 4 (influences HLA class II expression) isoform
           1 [Bos taurus]
          Length = 744

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 72  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145


>gi|293348538|ref|XP_002726934.1| PREDICTED: regulatory factor X4-like [Rattus norvegicus]
          Length = 652

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 115 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 169

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 170 RLGTRGQSKYHYYGIAVKE 188


>gi|281338613|gb|EFB14197.1| hypothetical protein PANDA_017493 [Ailuropoda melanoleuca]
          Length = 721

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 49  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 103

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 104 RLGTRGQSKYHYYGIAVKE 122


>gi|208965428|dbj|BAG72728.1| regulatory factor X, 4 [synthetic construct]
          Length = 705

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 63  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136


>gi|194226740|ref|XP_001499083.2| PREDICTED: regulatory factor X, 4 (influences HLA class II
           expression) [Equus caballus]
          Length = 734

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 63  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136


>gi|149637931|ref|XP_001508397.1| PREDICTED: similar to regulatory factor X4 [Ornithorhynchus
           anatinus]
          Length = 939

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 266 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 320

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 321 RLGTRGQSKYHYYGIAVKE 339


>gi|149067365|gb|EDM17098.1| similar to regulatory factor X 4 variant (predicted), isoform CRA_a
           [Rattus norvegicus]
          Length = 460

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 63  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136


>gi|148689463|gb|EDL21410.1| regulatory factor X, 4 (influences HLA class II expression),
           isoform CRA_c [Mus musculus]
          Length = 808

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 136 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 190

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 191 RLGTRGQSKYHYYGIAVKE 209


>gi|148689461|gb|EDL21408.1| regulatory factor X, 4 (influences HLA class II expression),
           isoform CRA_a [Mus musculus]
          Length = 693

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 63  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136


>gi|126339786|ref|XP_001374936.1| PREDICTED: similar to winged-helix transcription factor RFX4
           [Monodelphis domestica]
          Length = 732

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 60  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 114

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 115 RLGTRGQSKYHYYGIAVKE 133


>gi|331999966|ref|NP_001193620.1| transcription factor RFX4 isoform d [Homo sapiens]
 gi|114646709|ref|XP_509336.2| PREDICTED: transcription factor RFX4 isoform 6 [Pan troglodytes]
          Length = 744

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 72  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145


>gi|114646711|ref|XP_001161711.1| PREDICTED: transcription factor RFX4 isoform 2 [Pan troglodytes]
          Length = 596

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 72  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145


>gi|109098560|ref|XP_001099914.1| PREDICTED: transcription factor RFX4-like isoform 2 [Macaca
           mulatta]
          Length = 747

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 72  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145


>gi|23428950|gb|AAM52484.1| winged-helix transcription factor RFX4 variant 3 [Homo sapiens]
          Length = 735

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 63  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136


>gi|26329719|dbj|BAC28598.1| unnamed protein product [Mus musculus]
          Length = 725

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 53  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 107

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 108 RLGTRGQSKYHYYGIAVKE 126


>gi|73969286|ref|XP_851020.1| PREDICTED: similar to regulatory factor X4 isoform c isoform 2
           [Canis familiaris]
          Length = 725

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 53  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 107

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 108 RLGTRGQSKYHYYGIAVKE 126


>gi|47132527|ref|NP_998759.1| transcription factor RFX4 isoform c [Homo sapiens]
 gi|332840240|ref|XP_001161826.2| PREDICTED: transcription factor RFX4 isoform 4 [Pan troglodytes]
 gi|332278145|sp|Q33E94|RFX4_HUMAN RecName: Full=Transcription factor RFX4; AltName: Full=Regulatory
           factor X 4; AltName: Full=Testis development protein
           NYD-SP10
 gi|119618188|gb|EAW97782.1| regulatory factor X, 4 (influences HLA class II expression),
           isoform CRA_a [Homo sapiens]
 gi|158256326|dbj|BAF84134.1| unnamed protein product [Homo sapiens]
          Length = 735

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 63  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136


>gi|67906191|ref|NP_001020089.1| transcription factor RFX4 isoform 1 [Mus musculus]
 gi|81912034|sp|Q7TNK1|RFX4_MOUSE RecName: Full=Transcription factor RFX4; AltName: Full=Regulatory
           factor X 4
 gi|33359240|gb|AAQ17042.1| regulatory factor X 4 variant [Mus musculus]
 gi|36314596|gb|AAM52485.2| winged-helix transcription factor RFX4 variant 3 [Mus musculus]
 gi|41015986|dbj|BAD07408.1| brain-specific regulatory factor X 4 [Mus musculus]
          Length = 735

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 63  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136


>gi|81157962|dbj|BAE48231.1| regulatory factor X4, isoform c [Homo sapiens]
          Length = 744

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 72  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145


>gi|81157964|dbj|BAE48232.1| regulatory factor X4, isoform d [Homo sapiens]
          Length = 735

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 63  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136


>gi|14278918|dbj|BAB59001.1| transcription factor RFX4 [Homo sapiens]
 gi|119618189|gb|EAW97783.1| regulatory factor X, 4 (influences HLA class II expression),
           isoform CRA_b [Homo sapiens]
          Length = 563

 Score = 41.8 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 72  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145


>gi|113200743|ref|YP_717903.1| putative replication protein [Canine papillomavirus 3]
 gi|83314075|gb|ABC02205.1| putative replication protein [Canine papillomavirus 3]
          Length = 628

 Score = 41.8 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 21/179 (11%)

Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
            E    +   + +   ++  EV+ +    +   L G  K        G   +GKS     
Sbjct: 413 EEEGDWKNIGNFLR--YQGIEVITFI-GALRDMLKGIPKRTCMCI-VGPPDTGKSAFCLS 468

Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKI 578
           +   FG + +                 K+   L  L  +RI +I +  ++  D I+   +
Sbjct: 469 LLDFFGGRVLSFTNY------------KSQFWLQPLADTRIALIDDATKSTWDYIDE-YM 515

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
           +    G+ +   L + N            I  N ++   +     + R  ++ F     
Sbjct: 516 RNALDGNAICVDLKHKNPLQIRCPP--LLITSNINIKHNDRWRYLYSRIHIVEFKHAFP 572


>gi|157869704|ref|XP_001683403.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68126468|emb|CAJ04379.1| putative mitochondrial DNA primase [Leishmania major strain
           Friedlin]
          Length = 532

 Score = 41.8 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 12/94 (12%)

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHET-----------RGSSKGKEIARRWSKQG 257
           E  +       E   G    WI + +  +                 ++  +     S++ 
Sbjct: 373 ESASRWLRQATEVEVGEWRTWIGLGLCAYRVAYHFRNARNLPRPAMAEMLDAWTEASRKC 432

Query: 258 S-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
              +       +W  FD E++G  +   S +  L
Sbjct: 433 PLKFHSGECEARWAAFDPEKLGSQSDWWSAYKRL 466


>gi|5852135|emb|CAB55379.1| hypothetical protein L7836.04 [Leishmania major]
          Length = 679

 Score = 41.8 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 12/94 (12%)

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHET-----------RGSSKGKEIARRWSKQG 257
           E  +       E   G    WI + +  +                 ++  +     S++ 
Sbjct: 520 ESASRWLRQATEVEVGEWRTWIGLGLCAYRVAYHFRNARNLPRPAMAEMLDAWTEASRKC 579

Query: 258 S-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
              +       +W  FD E++G  +   S +  L
Sbjct: 580 PLKFHSGECEARWAAFDPEKLGSQSDWWSAYKRL 613


>gi|220921974|ref|YP_002497275.1| virulence-associated E family protein [Methylobacterium nodulans
           ORS 2060]
 gi|219946580|gb|ACL56972.1| virulence-associated E family protein [Methylobacterium nodulans
           ORS 2060]
          Length = 509

 Score = 41.8 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 15/147 (10%)

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
           +    V      G KA   + + G  G+ KST         G  +  +            
Sbjct: 258 FLVAMVARIYEPGCKADYMMVLEGEQGARKST----ACAILGGPWFSDNLPDVTTGKDVA 313

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
           +          L G  ++ I+E +   +   A +K          R +YG      P   
Sbjct: 314 Q---------HLAGKWLIEIAEMSAMSKAEDAALKAFISRPVERYRPSYGRKEIIQPRQC 364

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIP 631
                 NK  ++R+      RRY  + 
Sbjct: 365 VFIGTTNKATYLRDETGG--RRYWPVK 389


>gi|300726996|ref|ZP_07060416.1| primase C 2 (PriCT-2) family [Prevotella bryantii B14]
 gi|299775719|gb|EFI72309.1| primase C 2 (PriCT-2) family [Prevotella bryantii B14]
          Length = 810

 Score = 41.8 bits (96), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 3/104 (2%)

Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
                    +  + I      +  S   +    +  +RQ   +E+   L   G +     
Sbjct: 144 PIYWANKADEVSKSIKPRSSVNSFSKSTAAYNCDEADRQAEIQEVARQLVDRGIDI-TAG 202

Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW 269
           ++ W+ +  A+         G+EI  + S+    YD    + ++
Sbjct: 203 YNNWLNLGFAL--ADGLGEDGREIFHQLSQLNDEYDTAECDRQY 244


>gi|83311002|ref|YP_421266.1| ATPase of the AAA+ class [Magnetospirillum magneticum AMB-1]
 gi|82945843|dbj|BAE50707.1| ATPase of the AAA+ class [Magnetospirillum magneticum AMB-1]
          Length = 711

 Score = 41.8 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 15/178 (8%)

Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
           +      +    AL   N     +   G  G+GK+   ++I    G    ++    D+  
Sbjct: 476 QRHRVIDQWGFDALT-DNPLGLCVLFHGPSGTGKTMAASVIANELG----LSLYKVDLSS 530

Query: 541 NRPPEAGKANPSLIRLMGSR--IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
                 G+    L +L      + ++   +E + + A + +     D             
Sbjct: 531 VLSKYIGETEKHLAQLFDQAEAMNVVLFFDEAESLFARRTETKDSHDRYANLQTGYLLQR 590

Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYI-VIPFDKPIANRDASFAQKLETKYTLEA 655
               + T  +  N    ++N D A+ RR+  +I F  P    +     +L  K    A
Sbjct: 591 VERYAGTVILSTN---LLKNLDQAFTRRFRFIIEF--PFPGPEERL--RLWQKAFPAA 641


>gi|39938842|ref|NP_950608.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721951|dbj|BAD04441.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 457

 Score = 41.8 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 90/286 (31%), Gaps = 30/286 (10%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
           K     +  L   K  +       +  ++ +++  +      R + ++   + +     L
Sbjct: 144 KEKQEELEKLAQEKAQLQTQENLQQQISQLNQALNYVEANQKRIEELKTQKEYRKNQTEL 203

Query: 410 EAGSIFSI--TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
           +  + F +  T   L    +       +  L+  + +  TK+    K     +      +
Sbjct: 204 KNLNDFQLFLTDQKLAFEKQKKNLTIQLNHLKENKPLPHTKKQVTFK---DVYGMETEKE 260

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           E  DL+S +  ++ ++++                +   + G  G+GK+ L   IK   G 
Sbjct: 261 ELDDLLSYFRTNQSLINF-----------DKVRPKGYLLYGPPGTGKTFL---IKALCGE 306

Query: 528 QYVINAEASDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQM 581
             V         + R    G+    +             I+ I E    +  N + I   
Sbjct: 307 ANVHFINLIP-SKFRQKYIGEGEKEVEKVWQEAENHDKTIIFIDEIEGLENRNDSNI-SS 364

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
            G + +   L+  + ++ S          N    +   D A   R+
Sbjct: 365 GGVNVINTLLDKLDGFNSSNKKIVLMGATNNLHKI---DTALRSRF 407


>gi|255012417|ref|ZP_05284543.1| ATPase, AAA family protein [Bacteroides sp. 2_1_7]
          Length = 670

 Score = 41.8 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 77/281 (27%), Gaps = 45/281 (16%)

Query: 455 STGTPFVEGEPSQEFLDLVSGYF-ES-----EEVMDYFTRCV------GMALLGGNKAQR 502
            T   + E    +E                 +E +D   R +      G  LL   K   
Sbjct: 378 VTNYVYDEQNTIKEIKRWNDEIIEPDHILKPKETIDGIIRPIIGNKEKGCLLLSPQKDNI 437

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
              I G  GSGK+ ++  +  A G   V  + +  I +        +      L      
Sbjct: 438 SFIICGPPGSGKTYIVKQMAKALGWPLVELSPSHFIKKGLDFIESTSREIFNDLYNLHHA 497

Query: 563 IISETNENDEI-NAAKIKQMTGGDCM----TARLNYGNTYSESPASFTPFIVPNKHLFVR 617
           ++     ++   N ++  + T    +    TA +           +    +  N      
Sbjct: 498 VVFFDECDELFRNRSESGETTSSRTILNFLTASMLPKLQDLHDKQNIIFVLGTNYL---H 554

Query: 618 NPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY----ISKGL 671
           N D A  R  R+            D         +       W  KG          + +
Sbjct: 555 NIDSAVRRKGRF------------DHRILFDRPDEEARRLFYWA-KGKSNDSDISEDEFV 601

Query: 672 DVDIPEVCLKAKEE----ERQGTDTYQAWIDDCCDIGENLW 708
                 +     +      +Q  D  Q+++D C   GE+  
Sbjct: 602 KRTKTALVKDLTKALSSSYQQEED--QSYLDWCGAKGEDSE 640


>gi|302544537|ref|ZP_07296879.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302462155|gb|EFL25248.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 258

 Score = 41.8 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 22/111 (19%), Gaps = 13/111 (11%)

Query: 46  IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
             + P        G     L     D  +                   V     P   + 
Sbjct: 81  WARSPGASILLPTGRTFDAL-----DVPESAGCLALARMERRNVDLGPVTS--TPDRRML 133

Query: 106 FRMNKEGIKKKKTTESTQG----HLDI--LGCGQYFVAYNIHPKTKKEYTW 150
           F +      K        G     +D+   G G Y VA            W
Sbjct: 134 FFVLPGAAAKIPDLLRNLGWPPSSVDLAARGDGDYVVAPPTRVGRHGPTQW 184


>gi|290986472|ref|XP_002675948.1| 26S proteosome subunit P45 [Naegleria gruberi]
 gi|284089547|gb|EFC43204.1| 26S proteosome subunit P45 [Naegleria gruberi]
          Length = 407

 Score = 41.8 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 100/330 (30%), Gaps = 43/330 (13%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN----- 399
           +   +   A I    + +K+ + +L       N+ +   R       + Q    +     
Sbjct: 18  NGLKNYYIAKIQEKEIVLKDKIENLRRLQAQRNELNGRVRSLKEELQQLQEPGSHVGEVV 77

Query: 400 ------SKAKSTAQSLEAGSIFSITSDLLDSSSRF-LGEQDGILDLETGQKVKPTKELYI 452
                       +Q  +       + +L D S    +  ++    L      K    + +
Sbjct: 78  KVMGKKKVLIKISQEGKYIVDIDKSIELKDLSPGVRVALRNDSYALHKILPNKIDPLVSL 137

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHI 506
            K    P    E      + +      +EV++           +G+A        + + +
Sbjct: 138 MKVEKVPDATYEMVGGLDEQIKEV---KEVIELPIKHPELFESLGIA------QPKGVIM 188

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G  G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I  
Sbjct: 189 YGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIF 247

Query: 567 TNENDEINAAKIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
            +E D I + + +   GG     +             ES  +    +  N+   +   D 
Sbjct: 248 MDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDIL---DP 304

Query: 622 AWWR--RYIVIPFDKPIANRDASFAQKLET 649
           A  R  R      D+ I   + +   +L+ 
Sbjct: 305 ALLRPGRI-----DRKIEFPNPNELARLDI 329


>gi|19746259|ref|NP_607395.1| hypothetical protein spyM18_1288 [Streptococcus pyogenes
          MGAS8232]
 gi|71903676|ref|YP_280479.1| phage protein [Streptococcus pyogenes MGAS6180]
 gi|19748446|gb|AAL97894.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232]
 gi|71802771|gb|AAX72124.1| phage protein [Streptococcus pyogenes MGAS6180]
          Length = 293

 Score = 41.8 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 1  MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID--KLPACGFGFVC 58
          M  + +   A   +  G+++IPLR     P    K+++  ++ E I       C +  + 
Sbjct: 1  MRYLMYHTTALSFLKKGYQVIPLRKDTGTPMI--KFKDIQITEEVIKNTNWFNCDYALLM 58

Query: 59 GVGEQPLYAFDID--SKDEKTANTFKDTFEILH 89
              + ++  DID    DEK A       + + 
Sbjct: 59 ----RGIWCIDIDTHDMDEKLAKELYIMIKKMG 87


>gi|262342357|gb|ACY54678.1| NS1 [Aleutian mink disease virus]
          Length = 641

 Score = 41.8 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 20/154 (12%)

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
             F E E  +  L  +     +E+   Y  + +   L   +  +  I + G GG+GK+ L
Sbjct: 385 IKFNEPENDEPLLATIRDMGLNEQ---YLKKALCTILTKQSGKRGCIWLYGPGGTGKTLL 441

Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
            +LI  A  N  ++                  N          I+   E           
Sbjct: 442 ASLICKATKNYGMVTT-------------SNPNFPWTDCGNRNIIWAEECGNLGNWVED- 487

Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
            K +TGG  +          S         +  N
Sbjct: 488 FKAITGGGDVKVDTKNKQPQS---IKGCVIVTSN 518


>gi|194380922|dbj|BAG64029.1| unnamed protein product [Homo sapiens]
          Length = 247

 Score = 41.8 bits (96), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
            W+++  +I E +     +L   Y ++ E+    D + ++  +    ++Q+     +   
Sbjct: 72  QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126

Query: 755 KIEKEWKSKRIIKGLKLKP 773
           ++    +SK    G+ +K 
Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145


>gi|327532765|ref|NP_001127417.1| 26S protease regulatory subunit 8 [Pongo abelii]
          Length = 398

 Score = 41.8 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 80/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 73  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKTLPNKVDPLVSL 129

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 130 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 183

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 184 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKLIGEGARMVRELFVMAREHAPSIIFMDE 242

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +G D    R    L       E+  +    +  N+   +   D A  R
Sbjct: 243 IDSIGSSRLEGGSGRDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 299

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 300 PGRIDRKIEF--PPPNEEARLD 319


>gi|55729400|emb|CAH91432.1| hypothetical protein [Pongo abelii]
          Length = 398

 Score = 41.8 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 80/262 (30%), Gaps = 32/262 (12%)

Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455
            K K   +    G         +D +       +  + L             K   +   
Sbjct: 73  DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKTLPNKVDPLVSL 129

Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509
                V     +    L     E +EV++           +G+A        + + + G 
Sbjct: 130 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 183

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
            G+GK+ L   + +   +   I    S+++Q    E  +    L  +       I   +E
Sbjct: 184 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKLIGEGARMVRELFVMAREHAPSIIFMDE 242

Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
            D I +++++  +G D    R    L       E+  +    +  N+   +   D A  R
Sbjct: 243 IDSIGSSRLEGGSGRDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 299

Query: 626 --RY-IVIPFDKPIANRDASFA 644
             R    I F  P  N +A   
Sbjct: 300 PGRIDRKIEF--PPPNEEARLD 319


>gi|118379323|ref|XP_001022828.1| hypothetical protein TTHERM_00951860 [Tetrahymena thermophila]
 gi|89304595|gb|EAS02583.1| hypothetical protein TTHERM_00951860 [Tetrahymena thermophila
           SB210]
          Length = 683

 Score = 41.8 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 11/161 (6%)

Query: 335 KKDKNNVYIWSLTL--DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
           +    N +I +     +K + +         ED+     + ++  +  K     FN    
Sbjct: 526 ENSNKNRHIINEIESDNKYSDTNQKQNQKKMEDINKK--QLQNIEQQIKKDMNIFNFIKD 583

Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
              V++      T + L A  + S +S+ LD        +  + +LE    +        
Sbjct: 584 IILVKKAIMMILTKEQLAALHLVSCSSNYLDVD--LNNVESDVDELEQRLNLSH-----Y 636

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493
            K       E   SQ   D +S + + E + +   R +   
Sbjct: 637 EKQLAILQSEKFQSQYLQDFLSKFSDDENINEIDIRILSSI 677


>gi|320581811|gb|EFW96030.1| 26S protease regulatory subunit 8 [Pichia angusta DL-1]
          Length = 398

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 27/219 (12%)

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY--- 485
           +  +    +L      K    + +      P    +        +      +EV++    
Sbjct: 105 VCLRSDTYELHQILPNKVDPLVSLMMVEKVPDSTYDMVGGLDKQIKEI---KEVIELPVK 161

Query: 486 ---FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                  +G+A        + + + G  G+GK+ L   + +   +   I    S+++Q  
Sbjct: 162 HPELFESLGIA------QPKGVILYGPPGTGKTLLARAVAH-HTDCKFIRVSGSELVQKY 214

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL-----NYGNTY 597
             E  +    L  +       I   +E D I +++++  +GG     +            
Sbjct: 215 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESSSGGGDSEVQRTMLELLNQLDG 274

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFD 633
            ES       +  N+   +   D A  R  R    I F 
Sbjct: 275 FESSKDIKIIMATNRLDIL---DPALLRPGRIDRKIEFP 310


>gi|241677072|ref|XP_002411545.1| hypothetical protein IscW_ISCW011327 [Ixodes scapularis]
 gi|215504245|gb|EEC13739.1| hypothetical protein IscW_ISCW011327 [Ixodes scapularis]
          Length = 457

 Score = 41.4 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 12/134 (8%)

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
           GK  L+  +++   N +   ++   +       A +    +       + I+        
Sbjct: 3   GKDNLL--VRHLLSNFFTSKSDQR-MDATFRYNAEEVRFVIES----EMPILDMDEGGRR 55

Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
               K KQ TGGD +  R  Y    ++   +       N   ++     A  +R +++P 
Sbjct: 56  ----KFKQYTGGDTVANRQPYDRCNNDFILTSKFLTASNDLPYIPLHMSAEQKRIMIVPA 111

Query: 633 DKPIANRDASFAQK 646
                 +D +  ++
Sbjct: 112 LSTFI-QDRALLRR 124


>gi|2492521|sp|Q25544|PRS8_NAEFO RecName: Full=26S protease regulatory subunit 8 homolog; AltName:
           Full=Tat-binding protein homolog
 gi|1353667|gb|AAB01762.1| Tat-binding protein homolog [Naegleria fowleri]
          Length = 414

 Score = 41.4 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 100/330 (30%), Gaps = 43/330 (13%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN----- 399
           +   +   A I    + +++ + +L       N+ +   R       + Q    +     
Sbjct: 25  NGLKNYYIAKIQEKEIVLRDKIENLRRLQAQRNELNGRVRSLKEELQQLQEPGSHVGEVV 84

Query: 400 ------SKAKSTAQSLEAGSIFSITSDLLDSSSRF-LGEQDGILDLETGQKVKPTKELYI 452
                       +Q  +       + +L D +    +  ++    L      K    + +
Sbjct: 85  KVMGKKKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSL 144

Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHI 506
            K    P    E      + +      +EV++           +G+A        + + +
Sbjct: 145 MKVEKVPDATYEMVGGLDEQIKEI---KEVIELPIKHPELFESLGIA------QPKGVIM 195

Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
            G  G+GK+ L   + +   +   I    S+++Q    E  K    L  +       I  
Sbjct: 196 YGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIF 254

Query: 567 TNENDEINAAKIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
            +E D I + + +   GG     +             ES  +    +  N+   +   D 
Sbjct: 255 MDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDIL---DP 311

Query: 622 AWWR--RYIVIPFDKPIANRDASFAQKLET 649
           A  R  R      D+ I   + +   +L+ 
Sbjct: 312 ALLRPGRI-----DRKIEFPNPNELARLDI 336


>gi|313227570|emb|CBY22717.1| unnamed protein product [Oikopleura dioica]
          Length = 447

 Score = 41.4 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 24/222 (10%)

Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNK 499
           P K   +        V     +    L     E +EV++           +G+A      
Sbjct: 168 PNKIDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------ 221

Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
             + + + G  G+GK+ L   + +   +   I    S+++Q    E  +    L  +   
Sbjct: 222 QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGSRMVRELFVMARE 280

Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTA-----RLNYGNTYSESPASFTPFIVPNKHL 614
               I   +E D I +++++  +GG           L       E   +    +  N+  
Sbjct: 281 HSPSIIFMDEIDSIGSSRMESGSGGGDSEVQRTMLELLNQLDGFEPHQNIKIIMATNRID 340

Query: 615 FVRNPDDAWWR--RY-IVIPFDKPIANRDASFAQKLETKYTL 653
            +   D A  R  R    I F  P  +      +    K  L
Sbjct: 341 IL---DSALLRPGRIDRKIEFPAPNEDARVDILRIHSRKMNL 379


>gi|71659600|ref|XP_821521.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70886903|gb|EAN99670.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 929

 Score = 41.4 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
           +D+C  +  +      SL +++  + ++ +  D   +       +L       G   E  
Sbjct: 110 VDECLQMSPDA-TSLRSLYEAFVSFCKEYVLMDTTGMKNMPFYGDL-----NVGPGYEHY 163

Query: 757 EKEWKSKRIIKGLKLKPAFESV 778
           ++  K KR    L ++  FE V
Sbjct: 164 DRRLKRKRHW--LAIRHRFEDV 183


>gi|324997703|ref|ZP_08118815.1| hypothetical protein PseP1_03003 [Pseudonocardia sp. P1]
          Length = 460

 Score = 41.4 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 81/283 (28%), Gaps = 40/283 (14%)

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
           G+GK  L  ++ + F      +     + ++      +    L+   G  +V      E 
Sbjct: 157 GAGKGKLARVLVHPF---LGHDPAEWTLSKSENENEKRLTTILLGSPG--VVFFDNVGEG 211

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR---Y 627
             +    + + T      ARL   N    +       +  N   F ++      RR    
Sbjct: 212 VRVGGDSLAKATAEPTYAARLLQSNKSFIARVRCAWLMTGNNPSFSKD----MARRTVRI 267

Query: 628 IVIPFDKPIANRDASFAQKLE--TKYTLEAKKWF-LKGVKAYISK-------------GL 671
            + P  +    R       LE           W  L  V++++++             G 
Sbjct: 268 RLAPDTEHPERRTDFRHPDLEDWAAENRGRLAWAALTLVQSWLAEGGIGGGQTFGSYEGW 327

Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
              +    L + E           ++D+  +  E   EE    A++   + +       K
Sbjct: 328 ASVL-GGILDSTE--------VYGFLDNRDEFMEEAVEEEDDWAEAIELWADFYGTKPVK 378

Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEK---EWKSKRIIKGLKL 771
                T+     +          +        +  R++ G ++
Sbjct: 379 PSELHTLLRLTHELDLGLDSMDVRALGAALRSRRGRVLGGYRI 421


>gi|37595917|ref|NP_932321.1| E1 [Human papillomavirus type 96]
 gi|37089417|gb|AAQ88295.1| E1 [Human papillomavirus type 96]
          Length = 608

 Score = 41.4 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 37/153 (24%), Gaps = 16/153 (10%)

Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
           F       LL   K    +   G    GK+     +  A G + +  A      +++   
Sbjct: 415 FLDAFKHFLLSRTKKNCILF-YGPSDCGKTMFCMSLIKALGGRVISFAN----AKSQFWL 469

Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY-SESPASF 604
                  +  L  +     +  +         ++    G+ ++    +        P   
Sbjct: 470 QPLTESKIAMLDDATEACWNYLDTY-------LRNGLDGNWVSVDCKHKAPIQIRFPP-- 520

Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
              I  N  +           R  +  F     
Sbjct: 521 -LLITSNYDILKNERYRFLVSRIKIFEFKNKFP 552


>gi|86561515|ref|NP_490816.4| related to yeast Vacuolar Protein Sorting factor family member
           (vps-4) [Caenorhabditis elegans]
 gi|145312333|gb|AAK29883.4| Related to yeast vacuolar protein sorting factor protein 4
           [Caenorhabditis elegans]
          Length = 430

 Score = 41.4 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 19/167 (11%)

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
             G  K  + I + G  G+GKS +   +    G     +  +SD+M     E+ K   +L
Sbjct: 144 FTGNRKPWQGILLFGPPGTGKSYIAKAVATEAGESTFFSISSSDLMSKWLGESEKLVKNL 203

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES-----PASFTPFI 608
             L       I   +E D + +A+    +  +  +AR        +             +
Sbjct: 204 FALAREHKPSIIFIDEIDSLCSAR----SDNESESARRIKTEFMVQMQGVGLNNDGILVL 259

Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
                 ++   D A  RR     F+K I             K     
Sbjct: 260 GATNIPWI--LDSAIRRR-----FEKRIY---IPLPDIHARKEMFRI 296


>gi|146162295|ref|XP_001009196.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila]
 gi|146146457|gb|EAR88951.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila
           SB210]
          Length = 395

 Score = 41.4 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 26/202 (12%)

Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKA 500
              + + K    P    +        V      +EV++           +G+A       
Sbjct: 121 DPLVSLMKVEKVPDSTYDMIGGLDQQVKEV---KEVIELPIKHPEIFESLGIA------Q 171

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
            + + + G  G+GK+ L   I +   +   I    S+++Q    E  +    L  +    
Sbjct: 172 PKGVLLYGPPGTGKTLLARAIAH-HTDCTFIRVSGSELVQKYIGEGARMVRELFVMARQH 230

Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFV 616
              +   +E D I  A+I    GGD    R    L       ES  +    +  N+   +
Sbjct: 231 APCLIFIDEVDSIGGARIDSDRGGDSEVQRTMLELLNQLDGFESTNNIKIIMATNRIDIL 290

Query: 617 RNPDDAWWR--RY-IVIPFDKP 635
              D A  R  R    + F  P
Sbjct: 291 ---DPALLRPGRIDRKVEFPNP 309


>gi|149054559|gb|EDM06376.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_e
           [Rattus norvegicus]
          Length = 269

 Score = 41.4 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 25/184 (13%)

Query: 474 SGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
               E +EV++           +G+A        + + + G  G+GK+ L   + +   +
Sbjct: 19  KQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTD 71

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
              I    S+++Q    E  +    L  +       I   +E D I +++++  +GGD  
Sbjct: 72  CTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSE 131

Query: 588 TAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRD 640
             R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +
Sbjct: 132 VQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEE 186

Query: 641 ASFA 644
           A   
Sbjct: 187 ARLD 190


>gi|114669882|ref|XP_511591.2| PREDICTED: similar to mSUG1 protein isoform 12 [Pan troglodytes]
          Length = 268

 Score = 41.4 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 25/184 (13%)

Query: 474 SGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
               E +EV++           +G+A        + + + G  G+GK+ L   + +   +
Sbjct: 18  KQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTD 70

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
              I    S+++Q    E  +    L  +       I   +E D I +++++  +GGD  
Sbjct: 71  CTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSE 130

Query: 588 TAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRD 640
             R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +
Sbjct: 131 VQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEE 185

Query: 641 ASFA 644
           A   
Sbjct: 186 ARLD 189


>gi|241695468|ref|XP_002413060.1| DNA binding protein Mcm [Ixodes scapularis]
 gi|215506874|gb|EEC16368.1| DNA binding protein Mcm [Ixodes scapularis]
          Length = 790

 Score = 41.4 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 12/132 (9%)

Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKK-----------EYTWTTPPHRFKVEDTPLLSEE 168
              +G       G+Y V     P + +               +   +       P  +E 
Sbjct: 5   WRGRGRWASRRRGRYIVPAPSSPDSTRLSPDATSGVPDPSHPSWGLYFTDGNCPPAGAER 64

Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSK-TWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
            V  L  +F       +    +   SK ++  +      +  +        E    G HD
Sbjct: 65  RVTLLENYFAAKLSRFLDSNGAPDRSKTSYEVDVVELADDESVREAWPDLKESLRMGPHD 124

Query: 228 EWIPVVMAVHHE 239
               + +A+H  
Sbjct: 125 TLRIMGVALHQV 136


>gi|197294568|ref|YP_001799109.1| Putative peptidase M41 cell division protein, fragment [Candidatus
            Phytoplasma australiense]
 gi|171853895|emb|CAM11857.1| Putative peptidase M41 cell division protein, fragment [Candidatus
            Phytoplasma australiense]
          Length = 2026

 Score = 41.4 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 81/309 (26%), Gaps = 31/309 (10%)

Query: 351  ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
             T          K    +L E+ +   +  +      +      N+E            +
Sbjct: 1144 ETKLSTQEREIQKITDINLVEKNKLKTEIQRQKSLISHNQNNFSNLESRYLILQADLQKK 1203

Query: 411  AGSIFSITSDLLDSSSRFL--------GEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
               I +   ++ D +   +           + I DL          +    K        
Sbjct: 1204 ENVIQAQKENMKDFAQNAISKMNESQSNINNSIKDLTQQIIAANKLKEEEKKIINNSKSP 1263

Query: 463  GEPSQEFLDL--VSGYFESEEVMDYFTRCVGMAL--------LGGNKAQRFIHIRGVGGS 512
             +   E   L  +       E ++     +   L        +G  K  + + + G  G+
Sbjct: 1264 KKFQVEVSKLPTLGEVIGFREEIEQLKDFLSY-LKNPNKYNKIGVRKPPKGVLLYGPPGT 1322

Query: 513  GKSTLMNLI--KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
            GK+ L   I  +       + +++ S       P+         R     I+ I E    
Sbjct: 1323 GKTFLAKAIAKEANLPFFALNSSDFSKSYLGEGPKLINDVFEEARKKSPSIIFIDECESV 1382

Query: 571  DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI--VPNKHLFVRNPDDAWWRRYI 628
                 +     +  D M A         ++      F+    N    +   D A   R  
Sbjct: 1383 FRSRISNKSSHSDHDNMIAAFLTQTEGFKTDPKHPVFLMGATNYKDEI---DSAILSR-- 1437

Query: 629  VIPFDKPIA 637
               F++ I 
Sbjct: 1438 ---FNRHIK 1443


>gi|206561307|ref|YP_002232072.1| hypothetical protein BCAL2966 [Burkholderia cenocepacia J2315]
 gi|198037349|emb|CAR53279.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 934

 Score = 41.0 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 8/75 (10%)

Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD 261
           + Q       A +        + S + W  +  A+ HE   +  G ++   WS+    Y 
Sbjct: 6   DEQQRVEAALACIPP------DVSRETWYRIAAALKHEMGDA--GFDLFDGWSRGHDGYA 57

Query: 262 EENFNYKWDTFDFEE 276
             +    W +     
Sbjct: 58  ASDARDTWRSLSTSG 72


>gi|291232111|ref|XP_002735988.1| PREDICTED: HSPA12B-like [Saccoglossus kowalevskii]
          Length = 600

 Score = 41.0 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 71/228 (31%), Gaps = 11/228 (4%)

Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317
            TY E +   K   +  +     A  +     +     +L      + +    ++ A+  
Sbjct: 82  ETYSELSVEDKTHYYFDK--FKMALYKEGLDKVIDTEVELTAANGHSMKAVKVFSHAIH- 138

Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377
             K        +T     K +   ++ ++           +  + K+ + + + +    +
Sbjct: 139 YLKMEALKVITETTGVEFKGEEVQWVLTVPAI--------WGQASKQFMREAAYQANVAS 190

Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
           ++                    S         E G   S       +S   +    G +D
Sbjct: 191 RDHDKQLIIALEPEAASLHCIESPMAGFVNGKEHGVKCSDVVARPGTSYMIVDCGGGTVD 250

Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY 485
           +   +     K + I K+TG PF   +  +EF  L+   F  + ++DY
Sbjct: 251 ITMHRITSDKKLMEIHKATGGPFGGAQVDEEFEKLLKKIFGEKFILDY 298


>gi|269123583|ref|YP_003306160.1| AAA ATPase central domain-containing protein [Streptobacillus
           moniliformis DSM 12112]
 gi|268314909|gb|ACZ01283.1| AAA ATPase central domain protein [Streptobacillus moniliformis DSM
           12112]
          Length = 395

 Score = 41.0 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 54/184 (29%), Gaps = 28/184 (15%)

Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
                ++  E +     R +       N         G  G+GK+TL  +I    G  YV
Sbjct: 18  KDFDEFYGQENIRKILFRML------ENNKIISSIFFGPSGTGKTTLAKIIADKLGYDYV 71

Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
                     +    + KA  S+       ++   E +  +++    + +      +   
Sbjct: 72  YLNAIKASKNDITQISLKAKNSV----NKTLLFFDEIHRFNKLQQDSLLEDLENGNI--- 124

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
                                ++ +  + + A   R ++  F K       +  +K+  +
Sbjct: 125 --------------ILIGATTENPYF-SLNRALLSRVLLFEFKKLDEEDIFNILEKIAKE 169

Query: 651 YTLE 654
             LE
Sbjct: 170 EQLE 173


>gi|195164327|ref|XP_002023000.1| GL16409 [Drosophila persimilis]
 gi|194105062|gb|EDW27105.1| GL16409 [Drosophila persimilis]
          Length = 269

 Score = 41.0 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 25/184 (13%)

Query: 474 SGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
               E +EV++           +G+A        + + + G  G+GK+ L   + +    
Sbjct: 19  KQIKEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTE 71

Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
              I    S+++Q    E  +    L  +       I   +E D I +++I+  +GGD  
Sbjct: 72  CTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSE 131

Query: 588 TAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRD 640
             R    L       E+  +    +  N+   +   D A  R  R    I F  P  N +
Sbjct: 132 VQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEE 186

Query: 641 ASFA 644
           A   
Sbjct: 187 ARLD 190


>gi|209885530|ref|YP_002289387.1| AAA ATPase, central domain protein [Oligotropha carboxidovorans
           OM5]
 gi|209873726|gb|ACI93522.1| AAA ATPase, central domain protein [Oligotropha carboxidovorans
           OM5]
          Length = 298

 Score = 41.0 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 17/154 (11%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG----------KANPSL 553
           +   G  G+GK+     I      +          + NR   +G          +A   +
Sbjct: 73  VIFHGDVGTGKTATAECIANKLVIEARSEDSILFKLSNRVRGSGMVGEMGTLIAEAFKKV 132

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYG--NTYSESPASFTPFIVP 610
           I+  G     +   +E D + A++ ++ +   D +         +   +        +  
Sbjct: 133 IQSAGKHRRAVLIIDEGDSLGASRAQEHSHHEDKVAVNTLIQGVDDLRQYGGRIVVILCT 192

Query: 611 NKHLFVRNPDDAWWRRYIVI-PFDKPIANRDASF 643
           N+   +   D A  RR  +I  F +P  +     
Sbjct: 193 NRLSVL---DPALRRRAAIIEEFRRPTDDERRQL 223


>gi|225430151|ref|XP_002284747.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296081963|emb|CBI20968.3| unnamed protein product [Vitis vinifera]
          Length = 420

 Score = 41.0 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 89/326 (27%), Gaps = 35/326 (10%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
            I    +             ++  + N++                 V E  K    ++ L
Sbjct: 40  HIHDLQLQVRQKSHNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEVVKVMGKSKVL 99

Query: 410 EAGSIFSITSDLLDSSSRF--------LGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
                       +D +           +  ++    L      K    + + K    P  
Sbjct: 100 VKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDS 159

Query: 462 EGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
             +        +      +EV++           +G+A        + + + G  G+GK+
Sbjct: 160 TYDMIGGLDQQIKEI---KEVIELPIKHPELFESLGIA------QPKGVLLYGPPGTGKT 210

Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
            L   + +   +   I    S+++Q    E  +    L  +       I   +E D I +
Sbjct: 211 LLARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 269

Query: 576 AKIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY- 627
           A+++  TG      +             E+       +  N+   +   D A  R  R  
Sbjct: 270 ARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL---DQALLRPGRID 326

Query: 628 IVIPFDKPIANRDASFAQKLETKYTL 653
             I F  P         +    K  L
Sbjct: 327 RKIEFPNPNEESRFDILKIHSRKMNL 352


>gi|323693251|ref|ZP_08107469.1| hypothetical protein HMPREF9475_02332 [Clostridium symbiosum
           WAL-14673]
 gi|323502734|gb|EGB18578.1| hypothetical protein HMPREF9475_02332 [Clostridium symbiosum
           WAL-14673]
          Length = 272

 Score = 41.0 bits (94), Expect = 0.77,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 54/211 (25%), Gaps = 32/211 (15%)

Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
           S E    +       E  +         L       + +   G  G GK+     +    
Sbjct: 33  SDEIKKQLDNVIVEYEKKEILK---AYGLTPK----KKLLFCGAPGCGKTICAEAVANIL 85

Query: 526 GNQYVINAEASDIMQNRPPEAGKAN--PSLIRLMGSRIVIISETNE-NDEINA----AKI 578
               +       I       +              + ++   E +      +     +++
Sbjct: 86  DLPILYTCFDGLISSYLGETSSNIRKVFDFAS-KNNWVLFFDEFDAIGKSRDTVEEHSEL 144

Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-IVIPFDKPIA 637
           K++           +                 N    +   D A WRR+  ++ F+KP  
Sbjct: 145 KRVVNS--------FLQILDGFTCDSLVIAATNHEKAI---DKALWRRFDEIVMFNKPNY 193

Query: 638 NRDASFAQKLETK---YTLEAKKWF--LKGV 663
            +     QK         L+  K+   L+G 
Sbjct: 194 EQIVMLIQKKLRAFSVECLDINKFAKELEGC 224


>gi|284931717|gb|ADC31655.1| AAA ATPase-domain protein [Mycoplasma gallisepticum str. F]
          Length = 345

 Score = 41.0 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 14/159 (8%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
              +G  G+GK+  +  +    G    +    + I           +  L + +   ++ 
Sbjct: 100 FLFQGSPGTGKTESVKHLARILGRDCYVVDFDTLIDSKLGQTTRNISN-LFQEINKYLIA 158

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP------ASFTPFIVPNKHLFVR 617
                  DEI+A  + +    D    R     T S          +       N      
Sbjct: 159 QKSVILFDEIDALALDRTNSRD---VREMGRATTSVLKGLDNLDPNVLLIATTN---LYN 212

Query: 618 NPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEA 655
           + D A  RR+  +I F++         ++ L   Y  + 
Sbjct: 213 HFDKALTRRFDYIINFNRYEKEDLIRISEILLNSYLPKF 251


>gi|28895809|ref|NP_802159.1| primase [Streptococcus pyogenes SSI-1]
 gi|28811058|dbj|BAC63992.1| putative primase [Streptococcus pyogenes SSI-1]
          Length = 108

 Score = 41.0 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
               ++ ++T  A+IDD  +   +    +  L   Y E+ +   +     +   T    L
Sbjct: 1   MHAFKRDSNTILAFIDDWFERFTSTVLPTRFLWWLYKEWCKDNGHT---PLKQSTFENEL 57

Query: 743 KQKGFIGGIKRE 754
                 G +K++
Sbjct: 58  STNIPDGWVKKK 69


>gi|31544885|ref|NP_853463.1| AAA ATPase domain-containing protein [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541732|gb|AAP57031.1| AAA ATPase-domain protein [Mycoplasma gallisepticum str. R(low)]
 gi|284930961|gb|ADC30900.1| AAA ATPase-domain protein [Mycoplasma gallisepticum str. R(high)]
          Length = 345

 Score = 41.0 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 14/159 (8%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
              +G  G+GK+  +  +    G    +    + I           +  L + +   ++ 
Sbjct: 100 FLFQGSPGTGKTESVKHLARILGRDCYVVDFDTLIDSKLGQTTRNISN-LFQEINKYLIA 158

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP------ASFTPFIVPNKHLFVR 617
                  DEI+A  + +    D    R     T S          +       N      
Sbjct: 159 QKSVILFDEIDALALDRTNSRD---VREMGRATTSVLKGLDNLDPNVLLIATTN---LYN 212

Query: 618 NPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEA 655
           + D A  RR+  +I F++         ++ L   Y  + 
Sbjct: 213 HFDKALTRRFDYIINFNRYEKEDLIRISEILLNSYLPKF 251


>gi|322491944|emb|CBZ27217.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 535

 Score = 41.0 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 12/94 (12%)

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVH----------HETRGS-SKGKEIARRWSKQG 257
           E  +       E   G    WI + +  +          +  R + ++  +     S++ 
Sbjct: 374 ENASRWLRQATEVEVGEWRTWIGLGLCAYRVAYQFRNARNLPRLAMAEMLDAWTEASRKC 433

Query: 258 S-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
              +       +W  F+ + +G+ +   S +  L
Sbjct: 434 PLKFHSGECEARWAAFNPDRLGNQSDWWSAYKRL 467


>gi|2352444|gb|AAC72442.1| orf109 [Streptococcus phage Sfi21]
          Length = 109

 Score = 41.0 bits (94), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 3/73 (4%)

Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
            +E ++  +T   ++++      +       L   Y  +  +  +   K          L
Sbjct: 1   MQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKEL 57

Query: 743 KQKGFIGGIKREK 755
            Q   +G IK  +
Sbjct: 58  AQNLPVGWIKDRQ 70


>gi|319936295|ref|ZP_08010713.1| hypothetical protein HMPREF9488_01546 [Coprobacillus sp. 29_1]
 gi|319808671|gb|EFW05215.1| hypothetical protein HMPREF9488_01546 [Coprobacillus sp. 29_1]
          Length = 115

 Score = 41.0 bits (94), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 16/108 (14%)

Query: 13  AIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDKLP---ACGFGFVCGVGEQPLYAF 68
              N FK+ PL++  K  Q    W+E+      +I +         G   G     L   
Sbjct: 11  YAKNNFKVFPLKVNSKSGQVCKSWKEEATMDVNQIYQWFSNTDYNVGVRTG---GGLVVI 67

Query: 69  D-------IDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFR 107
           D       ID    K  N   +  E   +     +   +  K  +  R
Sbjct: 68  DGSYYFISIDYLIAKANNFVYEFLEGTKVLSKTQIDSTKIKKKQMRSR 115


>gi|317478741|ref|ZP_07937894.1| VirE domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316905076|gb|EFV26877.1| VirE domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 698

 Score = 41.0 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 16/187 (8%)

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA-FGNQYVINAEASDIMQNR 542
            +    +   L         +   G  G  K+T M  +        + + + +  + ++ 
Sbjct: 423 KWLVATIASLLDTKVVNHEILVFIGKQGIYKTTWMQRLLPVELQRYFYVKSNSRRVSKD- 481

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
                     L  L    +V + E  E      +++K +TG   +  R  YG+     P 
Sbjct: 482 ---------DLFTLTEFALVCLEELEEMTSAQVSQLKAITGMTDVNERAAYGHFKESRPH 532

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
             +     N   F+ +      RR+  +PF+    +    +       Y      W   G
Sbjct: 533 IASFCGTSNNVTFLNDLSG--NRRW--LPFEVDSIDSPFDYPIDYAGVYAQGYALWK-SG 587

Query: 663 VKAYISK 669
              +  +
Sbjct: 588 FHYWFEQ 594


>gi|308505464|ref|XP_003114915.1| hypothetical protein CRE_28272 [Caenorhabditis remanei]
 gi|308259097|gb|EFP03050.1| hypothetical protein CRE_28272 [Caenorhabditis remanei]
          Length = 409

 Score = 41.0 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 90/328 (27%), Gaps = 53/328 (16%)

Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
            +  +K     +    + K       +E E      +             N +       
Sbjct: 12  DILREKSDEQTLRLYWATK------VDEAEQAVTKKEQNVRRLQAQKNELNGKVALLKDE 65

Query: 405 TAQSLEAGSIFSITSDLLDSSSRFL-GEQDGIL------DLETGQKVKPTK------ELY 451
             +  E  S        +D     +    DG        D++  Q V  T+         
Sbjct: 66  IQRLHEQASHVGEVCKAMDKKKVLVKNNPDGKYIVDVDKDIDINQLVAGTRVAMKAESYM 125

Query: 452 ITKSTGTPFVEGEPSQEFLD-----------LVSGYFESEEVMDY------FTRCVGMAL 494
           I K                            L     E +EV++           +G   
Sbjct: 126 IHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG--- 182

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
               +  + + + G  G+GK+ L   + +       I    S+++Q    E  +    L 
Sbjct: 183 ---IEQPKGVLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELF 238

Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVP 610
            +       I   +E D I +++++   GGD    R    L       E+  +    +  
Sbjct: 239 VMAREHSPSIIFMDEIDSIGSSRLEGSRGGDSEVQRTMLELLNQLDGFEATKNIKVIMAT 298

Query: 611 NKHLFVRNPDDAWWR--RY-IVIPFDKP 635
           N+   +   D A  R  R    I F  P
Sbjct: 299 NRIDIL---DSALLRPGRIDRKIEFPAP 323


>gi|241239914|ref|XP_002401587.1| hypothetical protein IscW_ISCW003905 [Ixodes scapularis]
 gi|215496210|gb|EEC05851.1| hypothetical protein IscW_ISCW003905 [Ixodes scapularis]
          Length = 317

 Score = 41.0 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKP 635
           K KQ TGGD +  R  Y    S+   +       N   ++     A   R ++ P     
Sbjct: 36  KFKQFTGGDRVANRQPYDKCNSDFHITAKFVTASNDLPYISKTMQAEQSRLMITPTVSSS 95

Query: 636 IANR 639
           I ++
Sbjct: 96  IPDQ 99


>gi|238020410|ref|ZP_04600836.1| hypothetical protein GCWU000324_00291 [Kingella oralis ATCC 51147]
 gi|237867390|gb|EEP68396.1| hypothetical protein GCWU000324_00291 [Kingella oralis ATCC 51147]
          Length = 1444

 Score = 41.0 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
           S+ +W P+  A+         GK++   WS+QG  Y        W +
Sbjct: 25  SYADWYPMAYAIKDAL--GENGKDLWHDWSRQGDNYKASVAEATWKS 69


>gi|162605904|ref|XP_001713467.1| 26S proteasome SU [Guillardia theta]
 gi|13794399|gb|AAK39776.1|AF083031_133 26S proteasome SU [Guillardia theta]
          Length = 383

 Score = 40.6 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 13/152 (8%)

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
           G    + + + G  G+GK+ ++  I Y   +   I    S+ +Q    E  K    L +L
Sbjct: 160 GIDPPKGVLLYGPPGTGKTLIVKAIAYR-NSCAFIRTAGSEFVQKYLGEGPKMVRDLFKL 218

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGD----CMTARLNYGNTYSESPASFTPFIVPNK 612
             S    I   +E D I   +    TG D     +   L       +  ++    +  N 
Sbjct: 219 ANSYDSSIIFIDEIDAIATKRFDANTGADREVQRILIELLTQMDGFDVNSNTKIIMCTN- 277

Query: 613 HLFVRNPDDAWWR-----RYIVIPFDKPIANR 639
              V + D A  R     R I  PF      R
Sbjct: 278 --RVESLDPAILRPGRIDRKIYFPFPNTAEKR 307


>gi|9630380|ref|NP_046813.1| nonstructural protein NS1 [Diatraea saccharalis densovirus]
 gi|6136265|sp|O71153|VNCS_DSDNV RecName: Full=Non-capsid protein NS-1; AltName: Full=NCVP1;
           AltName: Full=Non-structural protein NS1
 gi|3170012|gb|AAC17999.1| nonstructural protein NS1 [Diatraea saccharalis densovirus]
          Length = 545

 Score = 40.6 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 56/522 (10%), Positives = 135/522 (25%), Gaps = 52/522 (9%)

Query: 143 KTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP-----LVKDKKSIIPSKTW 197
            T ++  W        +      S+E+ +Y+ +  +++          +  K      + 
Sbjct: 39  TTSRKREWAYGGRGT-MASLAKESQENFQYMAEELEKMGNQFFGYVTGQSVKPSSAYISD 97

Query: 198 TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG 257
                      +    L  +G    NG    +      +H     S   +     W  Q 
Sbjct: 98  VIILRDIQLRDQCLDVLREYGRSRRNG-LFGFSEEGDHIHVIHDCSYTNRSCRDIWLGQV 156

Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL------IPKGLLASRFSDAY 311
             +          T    +     K+   +    Y   +         +G      S+  
Sbjct: 157 KPFG-----TVQKTGKPVKYIWEFKRTDWYDVFIYFFIRKRGERAIYIRGESGKIPSNDE 211

Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
                  +K+   + ++D   +Y+ ++    I      +  A   N  +  K+     S 
Sbjct: 212 CVRWAREFKEREMVSSSDCTDYYECEQQEHKISR----RSDAGSTNGRLYEKKT---YSA 264

Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF--- 428
                 +                 + +  + +      +  +   I +   D        
Sbjct: 265 GKFAYIRQKTKALLRKYYVSPISAICDVPEFRDDDLLCDPKNRDYIQAACEDFGKDLNAM 324

Query: 429 -----LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM 483
                        +    +++ P  +   +              E L       + E+++
Sbjct: 325 SLREIYNLLTEDYNFTDDKELNPYAQFISSMKYDNLEGSLNIVNELLKY--QCNDDEDLI 382

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
             F   +   L           I      GK+   ++I                +   + 
Sbjct: 383 VEFLTNLVNVLDRRIPKLNAFLIISPPSGGKNFFFDMIFGLL------------LSYGQL 430

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-NTYSESPA 602
            +A + N    +   ++ V++      +      IK M GGD  T R+    + + +   
Sbjct: 431 GQANRHNLFAFQEAPNKRVLLWNEPNYESSLTDTIKMMFGGDPYTVRVKNRMDAHVKRTP 490

Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644
                +  N   F+     A+  R I   ++     +D    
Sbjct: 491 --VIILTNNTVPFMYE--LAFSDRIIQYKWNAAPFLKDYELK 528


>gi|254439360|ref|ZP_05052854.1| hypothetical protein OA307_4230 [Octadecabacter antarcticus 307]
 gi|198254806|gb|EDY79120.1| hypothetical protein OA307_4230 [Octadecabacter antarcticus 307]
          Length = 623

 Score = 40.6 bits (93), Expect = 0.99,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 8/164 (4%)

Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
             ++  +F      +L G    +  +++ G  GSGKS LM L+    G         +  
Sbjct: 237 DADI--FFGWVAAASLGGFPAWRSHLYVYGSRGSGKSKLMELVAGLLGEFGGNVLNDATE 294

Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RLNYGNTY 597
              R     +A P LI          + + ++     A  ++M+GG+     R    ++ 
Sbjct: 295 AGIRQSRNNQARPILIDEFEPDQGTRNGSKQDKMF--ALFRRMSGGEGGRVSRGGADHSA 352

Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
                    ++    H+ +   D +   R+++I         D 
Sbjct: 353 VSFRTLGAAYVTSINHIQLEPQDRS---RFVMIDLGHLPTTSDP 393


>gi|294143055|ref|YP_003559033.1| hypothetical protein SVI_4284 [Shewanella violacea DSS12]
 gi|293329524|dbj|BAJ04255.1| hypothetical protein [Shewanella violacea DSS12]
          Length = 394

 Score = 40.6 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 50/152 (32%), Gaps = 9/152 (5%)

Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
            D   R     +G+ D  +     P    ++     T   + +   ++  L        +
Sbjct: 69  FDFHPRSQAYLNGMHDWMSHNGDWP----WLETIIVTAPDDNKILGDWKKLAIDERGDTK 124

Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY--AFGNQYVINAEASDIM 539
           ++D+  + +  A+    ++  F  + G  G+    L  LI     F   +V +     + 
Sbjct: 125 LLDFMQQGLLPAIDKQYRSNGFRIMNGFTGNAGLGLYTLINRPDLFNAYFVASP---VLS 181

Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
            +       A   L  + G    +   T+++ 
Sbjct: 182 DDFAYVIKDAPKKLAAMKGKPRFLFMSTSDSG 213


>gi|67920909|ref|ZP_00514428.1| hypothetical protein CwatDRAFT_5379 [Crocosphaera watsonii WH 8501]
 gi|67857026|gb|EAM52266.1| hypothetical protein CwatDRAFT_5379 [Crocosphaera watsonii WH 8501]
          Length = 300

 Score = 40.6 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 76/257 (29%), Gaps = 32/257 (12%)

Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
            K  L+     AYNK +    KK    +    K W ++                     +
Sbjct: 27  DKQSLSMSTQAAYNKLLEGRGKKEPTTHLEVVKFWLQRSGCKWCYNDKGYYWFNKETHVW 86

Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
            +      + L  +  ++  + +    +       ++                       
Sbjct: 87  ELYRSLTEWLLRFKLSEDTPSKELKEMFPCVLKTNKDEGS-------------------- 126

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKV----KPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
              L   S  +   +G+ D++ G+           L + ++      EGE   E L L+ 
Sbjct: 127 IKKLPKPSGVIPFSNGVFDIKKGKFRVGAEPQDYLLSLGENFYYWDYEGEKPVEILHLID 186

Query: 475 GYF-ESEEVMDYFTRCVGMALLGGNK-----AQRFIHIR--GVGGSGKSTLMNLIKYAFG 526
                 E++ +       + ++G  +      +    +     G SG+STL N++    G
Sbjct: 187 MMSGGDEKLRELILAVCWLNIVGVQERRYDGFKNCFILWTSKDGYSGRSTLFNILDTCSG 246

Query: 527 NQYVINAEASDIMQNRP 543
           N+        D+    P
Sbjct: 247 NRICHLERLEDLTDANP 263


>gi|321476281|gb|EFX87242.1| hypothetical protein DAPPUDRAFT_307146 [Daphnia pulex]
          Length = 2318

 Score = 40.6 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 84/309 (27%), Gaps = 30/309 (9%)

Query: 441  GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTR---CVGMALLGG 497
             + +   ++                 ++ L+ +      +E+  Y T     +G AL   
Sbjct: 1589 HKVIASDEKGDTPLYVAAACEHENLCKKILNFLKEMLSDDELRKYLTDPNGFLGDAL--- 1645

Query: 498  NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
                 +  ++G        ++  +K  FG  ++I    ++ ++        A    +   
Sbjct: 1646 -----WDTMKGKKIKMFRIILESVKKIFGQDFLIALLKAESIKYEGGNVSSACHDEMFFN 1700

Query: 558  GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
                VI++  N  D +     +     +   AR              +   + +    + 
Sbjct: 1701 IVFEVIVNGENGYDNLYDLLFQNWKSIEH--ARRI---DNETFRKILSLNGLDDFIKRIF 1755

Query: 618  NPD--DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
            + D        ++V                ++      + K +F +       +G     
Sbjct: 1756 DTDAHKGM--HFVVCQILDKFTTEQRKELFRILITENSDTKSYFARCWLDLKEEG----- 1808

Query: 676  PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA---KSYSEYREQELNYDRKR 732
               C  +KE  +  +D     +     +         +       YS Y    +      
Sbjct: 1809 --NCKSSKEILKCISDNLGQSVVKELLVRNEYEVIKKAFYLLHDGYSNYIPSHVVSMFSF 1866

Query: 733  ISTRTVTLN 741
            ++ + V   
Sbjct: 1867 LTKKVVYDA 1875


>gi|302831904|ref|XP_002947517.1| hypothetical protein VOLCADRAFT_57246 [Volvox carteri f.
           nagariensis]
 gi|300267381|gb|EFJ51565.1| hypothetical protein VOLCADRAFT_57246 [Volvox carteri f.
           nagariensis]
          Length = 245

 Score = 40.6 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 16/166 (9%)

Query: 472 LVSGYFESEEVMDYFTRCVGMAL------LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
                   E         V + L       G  +  R + + G  G+GK+ L   +    
Sbjct: 4   TFDDIVGCERAKQLLHEAVALPLIIPEFFTGIREPWRGVLLHGPPGNGKTLLAKAVAKMV 63

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
           G  +   + +S   + R  E+ K   +L  +  +    I   +E D +  A+      G+
Sbjct: 64  GGAFFAVSPSSLTSKWRG-ESEKLLATLFAVAQAHAPAIIFIDEVDALGGAR---GVDGE 119

Query: 586 CMTARLNYGNTYSESP----ASFTPFIVPNKHLFVRNPDDAWWRRY 627
              +R        +            +         + D A  RR 
Sbjct: 120 HEASRRFKAELLQQMDGLASGRGVMVLAATNCP--WDLDPALRRRL 163


>gi|289551313|ref|YP_003472217.1| hypothetical protein SLGD_02002 [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180845|gb|ADC88090.1| Hypothetical protein SLGD_02002 [Staphylococcus lugdunensis
           HKU09-01]
          Length = 489

 Score = 40.6 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 458 TPFVEGEPSQEFLDLVSGYFESEE-------VMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
                 +  +        Y  +E+          +    V      G K    I + G  
Sbjct: 131 VESKSWDGIKRIETFFIDYLGAEDNHYNREVTKKWMMGAVARIYQPGIKYDSMIILYGGQ 190

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
           G GKST    +    G+ Y  + +             K +    +L GS I  I E +  
Sbjct: 191 GVGKST---AVSKLGGHWYNQSIKTF-----------KGDEVYKKLQGSWICEIEELSAF 236

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
            +     IK          R +YG      P         N + F+++      RR+  I
Sbjct: 237 QKSTIEDIKGFISAIVDIYRASYGKRTERHPRQCVFVGTTNNYEFLKDQTG--NRRFFPI 294

Query: 631 PFDK------PIANRDASFAQKLETKYTLEA 655
             DK      P  +      Q++  +     
Sbjct: 295 TTDKNKATKSPFDDLTPDVVQQMFAEAKEYF 325


>gi|39938889|ref|NP_950655.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
 gi|39721998|dbj|BAD04488.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
          Length = 786

 Score = 40.6 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 88/286 (30%), Gaps = 30/286 (10%)

Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
           K     +  L   K  +       +  +  +++  +      R + ++   + +     L
Sbjct: 144 KEKQEELEKLAQEKAQLQTQENLQQQISHLNQALNYVEANQKRIEELKTQKEYRKNQTEL 203

Query: 410 EAGSIFSI--TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
           +  + F +  T        +       +  L+  + +  TK+    K     +      +
Sbjct: 204 KNLNDFQLFLTDQKFAFEKQKKNLTIQLNHLKENKPLPHTKKQVTFK---DVYGMENEKE 260

Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
           E  DL++ +  ++ ++++                +   + G  G+GK+ L   IK   G 
Sbjct: 261 ELEDLLTYFRTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFL---IKALCGE 306

Query: 528 QYVINAEASDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQM 581
             V         + R    G+    +             I+ I E    +  N + I   
Sbjct: 307 ANVHFINLIP-SKFRQKYIGEGEKEVDKVWQEAENHDKTIIFIDEIEGLENRNDSNI-SS 364

Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
            G + +   L+  + ++ S          N    +   D A   R+
Sbjct: 365 GGVNVINTLLDKLDGFNSSNKKIVLMGANNNLHKI---DSALRSRF 407


>gi|328872757|gb|EGG21124.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum]
          Length = 443

 Score = 40.6 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/273 (8%), Positives = 72/273 (26%), Gaps = 30/273 (10%)

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
           +  ++     +       +  +          + +N +  +    ++    A +      
Sbjct: 44  LKYEKSERSKATIKAKTMEYLQRAEQLKEYLEKTKNKKPVAAMSGSSAKPGAPTTKKNGD 103

Query: 420 -DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG--Y 476
            D  D             D +  + +  +    +T+     + +     +  + +     
Sbjct: 104 VDDEDMDPE---------DKKRNESLTGS---ILTEKPNVKWDDVAGLHQAKEYLKEAVI 151

Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
           F     + +          G  K  + I + G  G+GKS L   +     + +   + + 
Sbjct: 152 FP----IKFPQMF-----TGKRKPWKGILLYGPPGTGKSYLAKAVATEISSTFFSISPSD 202

Query: 537 DIMQ--NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
            + +      +  K    + R   + ++ I E +           +      +       
Sbjct: 203 IVTKWLGDSEKLVKQLFEMAREKKNSVIFIDEIDSLCSTRNDS--ESESARRIKTEFLIQ 260

Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
                + +     +           D A  RR+
Sbjct: 261 MNGVGTDSDGILVLAATNIP--WGLDLAIRRRF 291


>gi|221483723|gb|EEE22035.1| transketolase, putative [Toxoplasma gondii GT1]
          Length = 699

 Score = 40.6 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
            + +     + GE   E  ++L + Y +    E     +  S +     L+    +G   
Sbjct: 322 VKQFYAQVQERGERSVEAWNALFERYKKEYPSEGEEIERMFSHKLRPEVLETLKTLGEKA 381

Query: 753 REKIEK-EWKSKRIIKGLK 770
           +EK +     S R++ G+K
Sbjct: 382 KEKADSTRAHSGRMLLGIK 400


>gi|237840945|ref|XP_002369770.1| transketolase, putative [Toxoplasma gondii ME49]
 gi|211967434|gb|EEB02630.1| transketolase, putative [Toxoplasma gondii ME49]
          Length = 699

 Score = 40.6 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
            + +     + GE   E  ++L + Y +    E     +  S +     L+    +G   
Sbjct: 322 VKQFYAQVQERGERSVEAWNALFERYKKEYPSEGEEIERMFSHKLRPEVLETLKTLGEKA 381

Query: 753 REKIEK-EWKSKRIIKGLK 770
           +EK +     S R++ G+K
Sbjct: 382 KEKADSTRAHSGRMLLGIK 400


>gi|328769760|gb|EGF79803.1| hypothetical protein BATDEDRAFT_12021 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 305

 Score = 40.6 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 47/144 (32%), Gaps = 17/144 (11%)

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKAN 550
              G  K  + + + G  G+GK+ +   I       +   + +S   +      +  +A 
Sbjct: 55  IFTGLRKPPKGLLLFGPPGTGKTMIGKCIASQAKATFFNISSSSLTSKWVGDGEKMVRAL 114

Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT----- 605
            ++ R+    ++ + E +       + + Q + G+  + R        +     T     
Sbjct: 115 FAVARVHQPSVIFVDEID-------SLLTQRSEGEIESTRRIKTEFLVQFDGCGTDGDDR 167

Query: 606 -PFIVPNKHLFVRNPDDAWWRRYI 628
              I           D+A  RR+ 
Sbjct: 168 ILMIGATNRPQ--EIDEAARRRFR 189


>gi|313906068|ref|ZP_07839420.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
 gi|313469113|gb|EFR64463.1| UvrD/REP helicase [Eubacterium cellulosolvens 6]
          Length = 653

 Score = 40.6 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 59/474 (12%), Positives = 130/474 (27%), Gaps = 76/474 (16%)

Query: 27  DKRPQRLGKWEE--QLLSSEKIDKLPACGFGFV--CGVGEQPLYAFDIDSKDEKTANTFK 82
            KRP  L KW++  + L  ++   +    +  V      E  L+       D+++   F+
Sbjct: 190 TKRPDYLAKWQKKFRYLLVDEFQDISPLQYEIVRMLAAPENNLFIV---GDDDQSIYRFR 246

Query: 83  DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHP 142
                         G  P I++ F  +  G K     E+ +   +IL      VA     
Sbjct: 247 --------------GASPGIMLKFPEDYPGAKVIALEENYRSTPEILAAAGSLVA----H 288

Query: 143 KTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202
             K+      P +       P       +      +E        +K       +     
Sbjct: 289 NHKRYSKNIRPVN-------PSGEPVVYQRFEDSRKECIHLAQSLRKENEKGTPFEEMAV 341

Query: 203 RQYTN---REITAFLSCFGEEFYNGS-----HDEWIPVVMAVHHETRGSSKGKEIARRWS 254
              TN   RE    L  +   F  G       D WI   +  + +    S+ +    R  
Sbjct: 342 LFRTNVGCREAVEQLMAYQIPFTMGDVLPCIFDHWIARDIFAYMDLGAGSRKRGDFLRIY 401

Query: 255 KQGSTYDEEN-FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNK 313
            + + Y   + F     +F+                ++Y   + + + +           
Sbjct: 402 NRPNRYISRDAFYDPVISFENL-------------YIYYEDKEWMCRRVEQLEADLDMVG 448

Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373
            +       +         + +        ++   +     +M  L  + E   + +   
Sbjct: 449 RLAPYGAINYIRREIAYDEYVR-------EYAGARNIPVEDLMQVLDELMESARNYTSYE 501

Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
           E     +           RR       +  + A    +  +      +LD +   +    
Sbjct: 502 EWKQAIADYREKLEQQKKRR---NREPEGVTVATLHASKGMEYDHVYILDVNEGIIPYHK 558

Query: 434 GILDLETGQKVKP--------TKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
            +LD +  ++ +            L++   +     + +PS      +   F  
Sbjct: 559 AVLDADLEEERRMLYVGMTRARHLLHLYSVSERYEKKTDPSP----FLKEIFGD 608


>gi|295696167|ref|YP_003589405.1| methane/phenol/toluene hydroxylase [Bacillus tusciae DSM 2912]
 gi|295411769|gb|ADG06261.1| methane/phenol/toluene hydroxylase [Bacillus tusciae DSM 2912]
          Length = 541

 Score = 40.6 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/120 (7%), Positives = 30/120 (25%), Gaps = 4/120 (3%)

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293
             +H    G           S++           +W   D+        ++         
Sbjct: 261 WILHTAVDGIMSVILEYGDESRRPDKPAYYELWKRWVYDDYYRTYLLPLEKYGIRIPSDL 320

Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA---WYKKDKNNVYIWSLTLDK 350
             + I +  +   +       + +++    + +    +    W++K     Y       +
Sbjct: 321 IQE-IWERFMVKDWHHKMAIELSAMWMFNSWRFEPLNERDFEWFEKKYPGWYSKYGNYWE 379


>gi|296112474|ref|YP_003626412.1| AAA family ATPase [Moraxella catarrhalis RH4]
 gi|295920168|gb|ADG60519.1| AAA family ATPase [Moraxella catarrhalis RH4]
 gi|326561607|gb|EGE11946.1| AAA family ATPase [Moraxella catarrhalis 7169]
 gi|326562030|gb|EGE12359.1| AAA family ATPase [Moraxella catarrhalis 46P47B1]
 gi|326564957|gb|EGE15158.1| AAA family ATPase [Moraxella catarrhalis 12P80B1]
 gi|326565345|gb|EGE15524.1| AAA family ATPase [Moraxella catarrhalis 103P14B1]
 gi|326568054|gb|EGE18144.1| AAA family ATPase [Moraxella catarrhalis BC7]
 gi|326570586|gb|EGE20624.1| AAA family ATPase [Moraxella catarrhalis BC1]
 gi|326577367|gb|EGE27253.1| AAA family ATPase [Moraxella catarrhalis 101P30B1]
 gi|326577853|gb|EGE27720.1| AAA family ATPase [Moraxella catarrhalis O35E]
          Length = 310

 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 81/291 (27%), Gaps = 41/291 (14%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL--DLVSGYFESEEVMDY---FT 487
           +   DL   Q    +      + +   +   +          +        +  Y     
Sbjct: 6   NQTTDLNRFQNRPKSSAKIAFELSDALYKMDDLVLPIKTKADLERTIG---LRQYQSEVF 62

Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
              G +       +  I++ G  G+GK+   + I +A G + ++        +       
Sbjct: 63  EHWGFSETHKFDNKMIINLYGEPGTGKTMSAHAIAHALGKKLILINYGDIESKYVGETPK 122

Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF-TP 606
               +      +  ++    +E D I + ++  MT     +         +       T 
Sbjct: 123 NIQAAFEFAKENDAILFF--DEADAILSRRVTNMTSATDTSVNQTRSVMLTLLNDYNDTV 180

Query: 607 FIVPNKHLFVRNPDDAWWRRYIV-----IP--------FDKPIANRDASFAQ-------- 645
               N   F+ N D A+ RR ++     +P        F+K I N+              
Sbjct: 181 IFATN---FISNYDPAFMRRILIHIEYTLPDEETRTYLFNKYIPNKLPHSIDLPTIVKLS 237

Query: 646 ------KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
                  +     L A     +G      + L   I  +     E  R+ T
Sbjct: 238 EGLSGSDISNAILLAAFSAKTEGCDLVTHENLQNKIEAIQRSKSENSRKET 288


>gi|212702815|ref|ZP_03310943.1| hypothetical protein DESPIG_00847 [Desulfovibrio piger ATCC 29098]
 gi|212673677|gb|EEB34160.1| hypothetical protein DESPIG_00847 [Desulfovibrio piger ATCC 29098]
          Length = 113

 Score = 40.6 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 6/74 (8%), Positives = 24/74 (32%), Gaps = 12/74 (16%)

Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
            + ++ +CC   + +   + ++   +  +            S + +   L+++       
Sbjct: 44  IRDFMQECCQSSKGVKTTATAIYDRFRVW--WNSRSKEPLPSQKRLGALLQER------- 94

Query: 753 REKIEKEWKSKRII 766
                +  +  RI 
Sbjct: 95  ---FVRHRRGGRIW 105


>gi|123194338|ref|XP_001283039.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121841621|gb|EAX70109.1| hypothetical protein TVAG_594820 [Trichomonas vaginalis G3]
          Length = 188

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 46/163 (28%), Gaps = 23/163 (14%)

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648
               Y +       +    +  N         D   RRY+V+        +D  +   L 
Sbjct: 28  VERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVK-TSEAHMQDTEYFDDLA 83

Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDD----CCD 702
              T +                 +   IP    + ++   +   +    +ID+    C D
Sbjct: 84  ETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLD 141

Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
                     SL   Y +Y ++   Y     S RT   N+K  
Sbjct: 142 E--------RSLYDEYKQYCQE---YGYMTASKRTFLANVKNL 173


>gi|160902770|ref|YP_001568351.1| recombination factor protein RarA [Petrotoga mobilis SJ95]
 gi|160360414|gb|ABX32028.1| AAA ATPase central domain protein [Petrotoga mobilis SJ95]
          Length = 411

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 74/248 (29%), Gaps = 33/248 (13%)

Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
           V     +E++ +     +       NK  R   I G  GSGKST++  +     + Y + 
Sbjct: 16  VDEVLGNEKLKEILKTWI------KNKKVRSFIIYGEPGSGKSTIVRALINEIKDYYDVF 69

Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
           + +  I   +  +      + +      + +      N       +  +  G+       
Sbjct: 70  SISGAIEGKKKIKDIIEQKNNLFTKPKLLFVDEIHRLNKAEQDTLLLSVETGE------- 122

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
                       T      ++  + + + A   R +V    + I +      Q++E  Y 
Sbjct: 123 -----------LTLIGATTENPAI-SVNPALLSRVLVFKTKELITDDYEKLFQQIEDYYK 170

Query: 653 -LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD----CCDIGENL 707
            L+  K   K +  Y    +   +  +   A E      D    ++ D         +N 
Sbjct: 171 DLKITKEARKALIEYAGNDIRRIMN-LIETANEAGINSIDL--EFLKDFTGYRLTYDKNA 227

Query: 708 WEESHSLA 715
                S  
Sbjct: 228 KYSFISAY 235


>gi|313618479|gb|EFR90482.1| virulence-associated protein E [Listeria innocua FSL S4-378]
          Length = 694

 Score = 40.3 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 15/149 (10%)

Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
                  V   +  G K    + + G  G GKST         G+ +  +   +D+    
Sbjct: 394 RKMMVAAVARIVHPGTKFDSVLILNGPQGIGKSTF---FAKLAGDWFSDSLTLTDMKDKA 450

Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
            PE         +L G  I+ + E     + +   +K          R +YG      P 
Sbjct: 451 GPE---------KLQGYWILELGELAGMRKTDVEVVKSFISRSDDKYRASYGVNVESHPR 501

Query: 603 SFTPFIVPNKHL-FVRNPDDAWWRRYIVI 630
                   N    F+R+      RR+  +
Sbjct: 502 QCIIVGSTNAESGFLRDITG--NRRFWPV 528


>gi|237745755|ref|ZP_04576235.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229377106|gb|EEO27197.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 885

 Score = 40.3 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 24/195 (12%)

Query: 455 STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR----FIHIRGVG 510
           S        E  +++LDL+   F ++ +    T   G       +A      F+ I G  
Sbjct: 498 SLRINRKADEYRRDWLDLLWTAFGAKGLAA-LTFWFGSLFAEQIRALHSSYPFLEIIGEA 556

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
           G+GKSTL+  +   FG       + S         A   N    ++ G  +V+I    E 
Sbjct: 557 GAGKSTLIEFLWKLFGRGGYEGFDPS----KSSLAARARNF--AQVSGLPVVLIESDRER 610

Query: 571 --------DEINAAKIKQMTGGDCMTARLN--YGNTYSESPASFTPFIVPNKHLFVRNPD 620
                      +  ++K    G  + AR     GN   E P   +  I  N  +   N  
Sbjct: 611 AEGNNPHVRSFDWDELKTAYNGRSVRARGMATGGNETYEPPFRGSVVISQNNAV---NAS 667

Query: 621 DAWWRRYIVIPFDKP 635
           +A   R + + FD+ 
Sbjct: 668 EAILSRIVHLNFDRS 682


>gi|60417238|emb|CAH65781.1| putative replication protein [Sulfolobus neozealandicus]
          Length = 1053

 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 77/286 (26%), Gaps = 41/286 (14%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQ---EFLDLVSGYFESE-EVMDYFTRCVGM 492
           D+             I           E  +   E ++ ++ ++ ++ + +    R   M
Sbjct: 612 DIVMPGFYPGENGKIIAVKVRVEKPSEEKVKKAIEVINELTKWYANQLDKLATVLRWAAM 671

Query: 493 A--------LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG----NQYVINAEASDIMQ 540
           A            N    ++ + G   +GK+T+  ++ + +G    +    + +      
Sbjct: 672 APFAFIYKVAHSFNDFIPWLLLWGSSRTGKTTMGEIVLHLWGLIESDYENESEKDERFQG 731

Query: 541 -----NRPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTGG---DCMTAR 590
                        AN    L  ++ S  +               +K M            
Sbjct: 732 FGDKIRYVEAGSGANTEYRLGEILRSSTLPFLVNEPGKMFEDTGVKDMIKHAVEKDEARA 791

Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
                     PA     +  NK   +   DDA+  R++ I F      +     +K   +
Sbjct: 792 RGERGRRRRIPAYAILIVTTNKEPPI--DDDAFMSRFLSIHFSYA-EKKSPEMQEKFRNE 848

Query: 651 YTLE---------AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
              +            WF+      I K          +  +E  R
Sbjct: 849 VMPKLKYLRYIGDFFAWFMIEHPELIKKNWRDI---AIILWQEAYR 891


>gi|160947474|ref|ZP_02094641.1| hypothetical protein PEPMIC_01408 [Parvimonas micra ATCC 33270]
 gi|158446608|gb|EDP23603.1| hypothetical protein PEPMIC_01408 [Parvimonas micra ATCC 33270]
          Length = 307

 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 62/240 (25%), Gaps = 25/240 (10%)

Query: 20  LIPLRLGDKRPQRL---GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76
            IP+               W     + E +++    G  FV      P    D+D+  + 
Sbjct: 40  KIPISPITCESNEWNKEENWASFETALEGLERSECDGLSFVL-TENDPFVCIDLDNVKDI 98

Query: 77  TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFV 136
             +          G     I      +  F       +  K   +     ++    +   
Sbjct: 99  FED--VQDIISDFGETYKEISVSGNGVHIF----AKGRIHKNINNQADRFEMYKSNKCIA 152

Query: 137 AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV----------- 185
                  T  E            E   L  +E +     +++ I   +            
Sbjct: 153 MTGDVIGTCTEIQNEQYKLNLYYEKYAL--KETIRERISYYKNIDSDVPNIEGILKTIYM 210

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK 245
            ++K     +   +  +    + ++   L+ F     +   D ++    A++     S +
Sbjct: 211 TNRKGRELFRGEFSTGDASKDDFQLLLILNSFTHGNADLMLDIFLKS--ALNRMDDMSKR 268


>gi|156837546|ref|XP_001642796.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113365|gb|EDO14938.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 362

 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 58/192 (30%), Gaps = 20/192 (10%)

Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALL--------GGNKAQRFIHIRGVGGSGKST 516
            S+E           E ++      V   L+           +A   + + G  G GK+ 
Sbjct: 82  TSEEIDISFKDIGGLESIISDLHEGVVYPLMLPELYENNPLLQAPSGVLLYGPPGCGKTM 141

Query: 517 LMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
           L   +    G  ++    +S + +      +   A  SL   +   ++ I E +      
Sbjct: 142 LAKALAKESGANFISIRMSSIMDKWYGESNKIVDAIFSLANKIQPCMIFIDEIDSFLRER 201

Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP--F 632
            +   ++T    + A          S          N    + + D A+ RR    P  F
Sbjct: 202 TSTDHEVTA--TLKAEFMTLWDGLVSNGRIMIVGATN---RINDIDSAFLRRL---PKRF 253

Query: 633 DKPIANRDASFA 644
              + +++    
Sbjct: 254 LISLPDKEQRLK 265


>gi|9885250|emb|CAC04162.1| hypothetical protein [Lactococcus phage phi31]
          Length = 268

 Score = 40.3 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 74/283 (26%), Gaps = 29/283 (10%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63
           E A +    G  +IP+   DK+P  +   + + L+ ++I       P       C     
Sbjct: 7   ETALRYKKLGISIIPVSR-DKKPM-IEFADREPLTEDEIKDFWKQNPTANLAMKCDKFVV 64

Query: 64  PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
                     D     + +   +     P +           F + +E +   +     +
Sbjct: 65  VDVDV---HNDINGYESIQPLLDEEWWKPTLSQTTASGGKQYFFLKREDMAVTQRIGFLK 121

Query: 124 GHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
           G +DI      Y V      +  + Y W                +E +  + K     T 
Sbjct: 122 G-VDIKAHENNYVVIPPSVTRKGQ-YKWDNQLPII------TAPKELIREIMKNRDNYTH 173

Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242
                        +    N    T +     +   G+              + + +    
Sbjct: 174 Y----------DFSGFTTNGSSKTAQLFETIVHGLGDSGGRNDALARFIGGLFLRNVDFD 223

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285
                     +       +++ F   +++   +E+      RS
Sbjct: 224 VVYQLAKQANF-ATSDPLEDKEFERTFESMFKKEMRRRNGIRS 265


>gi|159146228|gb|ABW90577.1| virulence-associated protein [Bacteriophage APSE-2]
          Length = 385

 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 16/158 (10%)

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243
                   ++     N    T  ++ + L          ++  W+ +   +A   +TR  
Sbjct: 184 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFE 243

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
            + K +   WS   +  D E    KW              R+ + ++F    K       
Sbjct: 244 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 295

Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNN 340
           A R   A      F            +   W    +N 
Sbjct: 296 AERLKTAVATVDEFDDLTDP-----PENSKWPTFKRNK 328


>gi|163803932|ref|ZP_02197766.1| hypothetical protein 1103602000458_AND4_04253 [Vibrio sp. AND4]
 gi|159172269|gb|EDP57163.1| hypothetical protein AND4_04253 [Vibrio sp. AND4]
          Length = 80

 Score = 40.3 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
           E+       G    +  + +W  +  A++ E   +++  +I   WS+ GSTYD+ +FN  
Sbjct: 8   ELHEAEEALGYISPDLPYIDWSKIGRALYSEYGDAAR--DIFEDWSEAGSTYDKRSFNSW 65

Query: 269 WDTFDFEE 276
           W  F   +
Sbjct: 66  WKNFRNTK 73


>gi|294899787|ref|XP_002776743.1| Spastin, putative [Perkinsus marinus ATCC 50983]
 gi|239883944|gb|EER08559.1| Spastin, putative [Perkinsus marinus ATCC 50983]
          Length = 302

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 48/189 (25%), Gaps = 34/189 (17%)

Query: 474 SGYFESEEVMDYFTRCVGM------ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
                 EE   +    + M         G       + + G  G+GK+ L   +     +
Sbjct: 33  DDIVGLEEPKRHLMEMIIMPSLNPTLFTGLRAPPLGLLLFGPPGNGKTYLAKAVASQCKD 92

Query: 528 QYVINAEASDIMQNRPPEAGKANPSL---IRLMGSRIVIISETNENDEINAAKIKQMTGG 584
               +  AS +      E  K    L    R     ++ + E +       + + +  G 
Sbjct: 93  AAFFSVSASALTSRWHGEDEKMVRDLFTVARARAPSVIFMDEVD-------SILGKRGGN 145

Query: 585 DCMTARLNYGNTYSESPASF-------TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI- 636
           D    R        +               +         + D+A  RR     F K I 
Sbjct: 146 DHEATRRLKTEMLIQLDGIHQDAEKGRVVVLAATNRPM--DLDEAVLRR-----FPKRIY 198

Query: 637 ---ANRDAS 642
                 D  
Sbjct: 199 VPLPEPDTR 207


>gi|155371018|ref|YP_001426552.1| hypothetical protein ATCV1_z071R [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124338|gb|ABT16205.1| hypothetical protein ATCV1_z071R [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 120

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 3/116 (2%)

Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIGENLWEESHSLAKSYSEYRE 723
            Y  K +   +PE  L  +E   + T+  ++++  +   +GE+          +  +Y  
Sbjct: 1   MYADKNIWTVLPEYFLDTRETIARSTNFIESFLSSEHVALGEDSVVPFADFKSALKDYAS 60

Query: 724 QELNYDRKRISTRTVTLNLKQ-KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
               +  K+++         + K  I   +         +   +KG+ +K A    
Sbjct: 61  SNSLH-MKQLTAEAFRAPFAKYKVSILPQQTIVYNGRQMNTIFLKGVAIKSAMTEE 115


>gi|313236497|emb|CBY11812.1| unnamed protein product [Oikopleura dioica]
          Length = 458

 Score = 39.9 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 21/150 (14%)

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN---RPPEAGKAN 550
             G     + + + G  G+GK+ L   +     +    N  AS +         +  +A 
Sbjct: 212 FTGIRAPPKGLLLYGPPGNGKTLLAKALAAEMPDAKFFNISASSLTSKWVGEGEKMVRAL 271

Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES------PASF 604
            S+ R M   I+ + E +       + +   +  +    +        +           
Sbjct: 272 FSIAREMQPCIIFMDEVD-------SLLSSRSSNEGDAIKRLKTEFLVQFDGAGTNKEDK 324

Query: 605 TPFIVPNKHLFVRNPDDAWWRRY---IVIP 631
              +           D+A  RR+   I++P
Sbjct: 325 VTIVAATNLP--HELDEAVLRRFPKRIMLP 352


>gi|326570745|gb|EGE20771.1| AAA family ATPase [Moraxella catarrhalis BC8]
 gi|326573583|gb|EGE23545.1| AAA family ATPase [Moraxella catarrhalis CO72]
          Length = 310

 Score = 39.9 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 81/291 (27%), Gaps = 41/291 (14%)

Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL--DLVSGYFESEEVMDY---FT 487
           +   DL   Q    +      + +   +   +          +        +  Y     
Sbjct: 6   NQTTDLNRFQNRPKSSAKIAFELSDALYKMDDLVLPIKTKADLEHTIG---LRQYQSEVF 62

Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
              G +       +  I++ G  G+GK+   + I +A G + ++        +       
Sbjct: 63  EHWGFSETHKFDNKMIINLYGEPGTGKTMSAHAIAHALGKKLILINYGDIESKYVGETPK 122

Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF-TP 606
               +      +  ++    +E D I + ++  MT     +         +       T 
Sbjct: 123 NIQAAFEFAKENDAILFF--DEADAILSRRVTNMTSATDTSVNQTRSVMLTLLNDYNDTV 180

Query: 607 FIVPNKHLFVRNPDDAWWRRYIV-----IP--------FDKPIANRDASFAQ-------- 645
               N   F+ N D A+ RR ++     +P        F+K I N+              
Sbjct: 181 IFATN---FISNYDPAFMRRILIHIEYTLPDEETRTYLFNKYIPNKLPHSIDLPTIVKLS 237

Query: 646 ------KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
                  +     L A     +G      + L   I  +     E  R+ T
Sbjct: 238 EGLSGSDISNAILLAAFSAKTEGCDLVTHENLQNKIEAIQRSKSENSRKET 288


>gi|218133952|ref|ZP_03462756.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991327|gb|EEC57333.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
          Length = 874

 Score = 39.9 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 49/153 (32%), Gaps = 4/153 (2%)

Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH-FLYTAD 329
           ++      +  +    F SL       + +    +   +   + +   Y+      +  D
Sbjct: 443 SYSIIASLNITRDELQFISLRELFADSVSRAGTYNELYERIAERIEPKYEDEFRQRFAPD 502

Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS--PRFWF 387
            K      K    IW+    ++   I ++L      V + +   E N             
Sbjct: 503 -KVELSFAKGRSRIWTDIRLRLDDGIYHWLSIQIIHVRNRNNSKEINAVFLARISDEQKI 561

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
               +++N+++   A   A   ++  + +++ D
Sbjct: 562 EEANQKRNLQDALSAAKLANEAKSRFLSNMSHD 594


>gi|51593842|ref|YP_068410.1| REP protein [Muscovy duck parvovirus]
 gi|1113785|gb|AAA83224.1| REP protein [Muscovy duck parvovirus]
          Length = 627

 Score = 39.9 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + VG  L G
Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRIYQILKLNNYNPQYVGSVLCG 320

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +    P         + 
Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEGNFGKISKKEVKEFFKWA 475


>gi|609092|emb|CAA52983.1| NS1 [Muscovy duck parvovirus]
          Length = 626

 Score = 39.9 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + VG  L G
Sbjct: 261 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRIYQILKLNNYNPQYVGSVLCG 319

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 320 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 366

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +    P         + 
Sbjct: 367 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 425

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 426 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEGNFGKISKKEVKEFFKWA 474


>gi|297527405|ref|YP_003669429.1| ATPase associated with various cellular activities AAA_5
           [Staphylothermus hellenicus DSM 12710]
 gi|297256321|gb|ADI32530.1| ATPase associated with various cellular activities AAA_5
           [Staphylothermus hellenicus DSM 12710]
          Length = 305

 Score = 39.9 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 4/137 (2%)

Query: 512 SGKSTLMNLIKYAFGNQYVINA--EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           SGKS  +      +    VI     A  + +    E+    P L  L+    V+I E   
Sbjct: 86  SGKSAFILPCSENYDEYRVIGDFHPAMAMAKGFNEESFIPRPLLAALLLDTGVLIDEIRR 145

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH-LFVRNPDDAWWRRYI 628
           ++E     +  +     +         Y +    F      N   +   +  DA+ RR +
Sbjct: 146 SNEDFQNLLLDIIDKRRIVIPEL-KKVYVQRGHGFQIIFTSNPLDIAQSDLSDAFLRRVV 204

Query: 629 VIPFDKPIANRDASFAQ 645
            I F  P    +    +
Sbjct: 205 RIEFKYPAIEEEIEIVK 221


>gi|82468919|gb|ABB76814.1| REP [Duck parvovirus]
          Length = 627

 Score = 39.9 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + VG  L G
Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRIYQILKLNNYNPQYVGSILCG 320

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +    P         + 
Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEGNFGKISKKEVKEFFKWA 475


>gi|242014262|ref|XP_002427810.1| Nesprin-1, putative [Pediculus humanus corporis]
 gi|212512279|gb|EEB15072.1| Nesprin-1, putative [Pediculus humanus corporis]
          Length = 7677

 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 68/241 (28%), Gaps = 15/241 (6%)

Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
            EE V+ L   ++         ++                   ++    S   ++F   +
Sbjct: 477 REEQVQQLLDQYKNFVSKNKIFQEFNKAFIDMQQVVEEYKREGDVDDRESLAIDQFMRNT 536

Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285
           +D W  V M +        +     +RW+     + E+     + +   +   +  +   
Sbjct: 537 NDRWRSVSMELRCVQSMLEEVLAYWKRWNSSADEF-EKWLERAY-SMKDQPEDEKMEFFQ 594

Query: 286 TFTSLFYHHGKLIPK-GLLASRFSDAYNKAMFSIYKKGHFL----------YTADTKAWY 334
             ++    + +L      L +   +     +   Y + + L          Y      + 
Sbjct: 595 DLSTWKDKNQQLNDTVSFLVATCEEPIANELRERYGRMNILWEQLFPSIKHYMKAGDLYK 654

Query: 335 KKDKNNVYIWSLTLDKITASIM--NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
            K    + +  L     +A        ++  E +    +E +  +   +     F    +
Sbjct: 655 HKKDYTLGLEKLQKWLRSAEKTLSATPINSSESMKAYGDELKKLSIELEEMEELFKEISK 714

Query: 393 R 393
           +
Sbjct: 715 K 715


>gi|254453017|ref|ZP_05066454.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
 gi|198267423|gb|EDY91693.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
          Length = 586

 Score = 39.9 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 65/221 (29%), Gaps = 17/221 (7%)

Query: 423 DSSSRFLG-EQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PSQEFLDLVS 474
           D   + +    + +++                     P    +         +  L  + 
Sbjct: 131 DDDGKAIAHCGNQLVEPGGRSLAPAEHRGKCIMIGAPPIAPPDNTFINPEEVEFLLSELK 190

Query: 475 GYFE---SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
             +      +   +        L G    +  +++ G  GSGKS LM +     G     
Sbjct: 191 ALWGWKRDVDADIFLGWVAAAILGGFPAWRSHLYVYGSRGSGKSKLMEVAAGMLGEFGGS 250

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
               +     R     +A P LI        + + + ++     A  ++M+GG+      
Sbjct: 251 VLNDATEAGIRQSRNNQARPILIDEFEPDQSVRNGSKQDGMF--ALFRRMSGGEGGRVSR 308

Query: 592 NYGN-TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
              + +          ++    H+ +   D +   R+++I 
Sbjct: 309 GGSDHSAVSFRTLGAAYVTSINHIQLEPQDRS---RFVMID 346


>gi|328700677|ref|XP_003241346.1| PREDICTED: non-capsid protein NS-1-like [Acyrthosiphon pisum]
          Length = 615

 Score = 39.9 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           L+  +  ++ ++  F + +   L      +  + I     +GK+   + +   F N    
Sbjct: 440 LMYQFENNDGLICRFLQTLVNILDKKIPKRNSMLIHSPPSAGKNYFFDAVAAFFLNY--- 496

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
                             N S     G R+VI +E N  +  +  K+K++ GGD     +
Sbjct: 497 --------GMFGTANKTNNFSFSDGAGKRLVIWNEPN-YEVYHLEKMKELLGGDTTRVHV 547

Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
            Y N            ++ N +L +   D ++  R  V
Sbjct: 548 KYKNDVPLQGPP--IILLTNHYLSI-INDPSFKDRLSV 582


>gi|251771179|gb|EES51761.1| hypothetical protein UBAL3_95530031 [Leptospirillum
           ferrodiazotrophum]
          Length = 246

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 60/217 (27%), Gaps = 13/217 (5%)

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
              V+          +     ++ + +           N+K       W     R Q + 
Sbjct: 22  NPVVFHEDSQEILELSGSKPSMLRLGDRCLTALGGRRTNDKGKDLGPDWEKAYLRLQEIC 81

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
           +        +    G              +F+     +   +    V+P     +     
Sbjct: 82  QKKGTFFMERLRGPGLWLEDGKPFFHDGKKFVKTDKHMYVSDPRGFVEPEPGNLL----- 136

Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKST 516
                 E +Q F   +   +  +E        +  AL GG    +  + + G  G+GKST
Sbjct: 137 ------ECAQIFYIQIYQAYG-KETATALLGFIVSALAGGAIPWRFHLWLSGPRGTGKST 189

Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           +  +++  FG   +     S     R        P L
Sbjct: 190 IWGILREIFGGYAIALDGKSSAAGIRQQIRASTRPVL 226


>gi|159480892|ref|XP_001698516.1| hypothetical protein CHLREDRAFT_113573 [Chlamydomonas reinhardtii]
 gi|158282256|gb|EDP08009.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 223

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 45/167 (26%), Gaps = 20/167 (11%)

Query: 473 VSGYFESEEVMDYFTRCVGMAL------LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
                  E         V + L       G  +  R + + G  G+GK+ L   +    G
Sbjct: 3   FDDIAGCEAAKQLLHEAVALPLVIPEFFTGIREPWRGVLLHGPPGTGKTLLAKAVAGMVG 62

Query: 527 NQYVINAEASDIMQNRPPEAGKAN--PSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
             +   + AS   + R       +    L R     ++ + E +       ++      G
Sbjct: 63  GAFFAVSPASLTSKWRGESEKLLSTLFELARANAPAVIFMDEIDAVGSARGSE------G 116

Query: 585 DCMTARLNYGNTYSESPASF----TPFIVPNKHLFVRNPDDAWWRRY 627
           +   +R        +            +         + D A  RR 
Sbjct: 117 EHEASRRFKAELLQQLDGMCSGRGVMLLAATNCP--WDLDPALRRRL 161


>gi|124378240|ref|YP_001029431.1| GfV-D3-ORF1 [Glypta fumiferanae ichnovirus]
 gi|124270647|dbj|BAF45568.1| GfV-D3-ORF1 [Glypta fumiferanae ichnovirus]
          Length = 493

 Score = 39.5 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET-RGSSK 245
           ++      K   N  N  YT + + A +    E  ++  +D W  V+ A++         
Sbjct: 129 NEPPSKKMKMDENIGNLSYTKQSLKALVMDL-ESRHSEKYDLWRNVLWALNTCGLENGYD 187

Query: 246 GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
             +IA  +SK+ S Y  ++F     TF+  +   + +  +  + ++      + +
Sbjct: 188 TLDIANEFSKRSSKY--KDFEDVKKTFESSDGTISQQYLNEISKVYQEDLHYMER 240


>gi|204324151|gb|ACI01073.1| putative non-structural protein [Dysaphis plantaginea densovirus]
          Length = 710

 Score = 39.5 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 70/219 (31%), Gaps = 29/219 (13%)

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTG-----------TPFVEGEPSQEFLDLVSGYF 477
           +  ++    +      +        K T              +      Q   +L+   F
Sbjct: 475 VALRNWCARIREWSVSEFNDYYSSGKITPYFNAYSRDKKQVYYDVHTSVQIAEELLCYQF 534

Query: 478 ESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
           +++ +++  F   V   +      +  + +     +GK+   + +   F N         
Sbjct: 535 DNDGDLISKFLYDVYAIVDKLVPKRNSMCVVSPPSAGKNFFFDAVASYFLNY-------- 586

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-N 595
                        N S     G R+V+ +E N  +  +  KIK++ GGD     + Y  +
Sbjct: 587 ---GMFGTANKTNNFSWADGAGKRLVLWNEPN-YETFHVEKIKELLGGDTTRVHVKYKGD 642

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
              + P     F++ N  L +   D A+  R +   +  
Sbjct: 643 QPLQGPP---IFLLTNNTLSI-CNDPAFADRLVTYEWKS 677


>gi|299142965|ref|ZP_07036091.1| VirE N- domain protein [Prevotella oris C735]
 gi|298575581|gb|EFI47461.1| VirE N- domain protein [Prevotella oris C735]
          Length = 292

 Score = 39.5 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 59/218 (27%), Gaps = 40/218 (18%)

Query: 62  EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIV----RIGQKPKILIPFRMNKEGIKKKK 117
              L   DID KD      F D     H  P +    R  +       FR          
Sbjct: 78  HSNLLCIDIDKKDNMGIAWFDDLKNEWHNIPQILYAGRSIRGKGWFAIFR--------IA 129

Query: 118 TTESTQGHLDIL----GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
             +  +   + L          +  +    ++  +  +  P  +   D  L ++  +E  
Sbjct: 130 YIDKHKAQFEALQRDFANSGLIIDKSCKDVSRMRFI-SYDPEPYVNVDATLYTKVWLE-- 186

Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
                              P+   + + +      +    +   G +    ++D+W  V 
Sbjct: 187 -----------------PKPTIHVSYSGSDMEQVEKCCRLIVDRGIDI-TATYDDWFHVG 228

Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
            A+         G+      S Q   Y     + K+D 
Sbjct: 229 AALASL---GESGRSSFYLVSSQNPKYKAAETDKKFDN 263


>gi|258453030|ref|ZP_05701023.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257859240|gb|EEV82095.1| conserved hypothetical protein [Staphylococcus aureus A5948]
          Length = 489

 Score = 39.5 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 16/147 (10%)

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +    V      G K    I + G  G GKST    +    G+ Y  + +         
Sbjct: 164 KWMMGAVARIYQPGIKYDCMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
               K +    +L GS I  I E +   +     IK          R +YG      P  
Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVI 630
                  N + F+++      RR+  I
Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPI 294


>gi|218780049|ref|YP_002431367.1| ATPase AAA [Desulfatibacillum alkenivorans AK-01]
 gi|218761433|gb|ACL03899.1| AAA ATPase central domain protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 337

 Score = 39.5 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 34/222 (15%)

Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLD 471
            + L+  S  +  ++G    +T   +    E      +   +            ++  L 
Sbjct: 47  EEALNFESNQVSNRNGCTRFKTDIPIPRDNESGFPLLSIKSYDHLWEELILPSETELILR 106

Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
            +   F+  +++       G  LL  +K    I + G+ G+GK+    +I    G   V 
Sbjct: 107 QIVQEFKESDILR------GYNLLPKSK----ILLCGIPGTGKTFTAQVISSVLGLPLVQ 156

Query: 532 NAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETN-----ENDEINAAKIKQMTGGD 585
               + I       A         +  G  +V+  E +      +D     +IK++    
Sbjct: 157 IQFDAIISSYLGETATNLRKVFDFINSGIWVVLFDEFDIIGKNRDDHYEHGEIKRVVNN- 215

Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
                  +             F   N H  +   D A WRR+
Sbjct: 216 -------FLQMIDSFEGESLIFAATNHHHIL---DPAIWRRF 247


>gi|225870195|ref|YP_002746142.1| phage protein [Streptococcus equi subsp. equi 4047]
 gi|225699599|emb|CAW93238.1| putative hypothetical phage protein [Streptococcus equi subsp. equi
           4047]
          Length = 466

 Score = 39.5 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 36/285 (12%)

Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRC--------VGMALLGGNKAQRFIHIRGVG 510
            +   +  +    +   +  +E+ + +  R         V        K    + + G  
Sbjct: 132 AYESWDHRERLAQVFQTWLGAEDSI-FVQRIAVMFFVGAVSKVFNPWVKFDYTLDLVGGQ 190

Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
           G+GK+T +            +  E          +       L  L    IV   E   +
Sbjct: 191 GAGKTTFLQ----------KVAVEWYTDSAKDFMDKDNYEIMLKSL----IVNDDEMVAS 236

Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
            +    ++K       ++ R +YG    + P +F      NK  ++ +      RR++ +
Sbjct: 237 RKTTFDELKAFVTKTELSFRRSYGRRAEKFPKNFVIARTSNKVEYLGDKTG--ERRFLPV 294

Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
                + + D    +  +       + W      A   KG  +   +         ++  
Sbjct: 295 -----LVDADQQLVKPFDMTDRDVLQLWG--EAVAIYKKGFTLTFDDDFEDELAVYKERF 347

Query: 691 ---DTYQAWIDDCCD-IGENLWEESHSLAKSYSEYREQELNYDRK 731
              D  ++ I D  D +  + WEE   + +    +        R 
Sbjct: 348 TYKDEAESQIYDYLDMLVPDEWEEMSVVQQHQYTWAYFNNGSYRN 392


>gi|297180892|gb|ADI17096.1| hypothetical protein [uncultured gamma proteobacterium
           HF0070_03O15]
          Length = 328

 Score = 39.5 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 15/107 (14%)

Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD------EENFNYKWDTFDFEEIGDTAK 282
           W  +   +++E  G  +G E+ R WSK+   Y+      E+    +W             
Sbjct: 22  WWEIGAMINNELPG-IEGLELWREWSKKDPDYEHCWEDGEDPCAARWYAT-----WRNDG 75

Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329
            R     L     ++ P      RF       +    +     Y  +
Sbjct: 76  ARYNMAHLIDLADRVDPD---RKRFKQVGLDKLIEDVEAIPLRYKEE 119


>gi|254449344|ref|ZP_05062788.1| conserved hypothetical protein [gamma proteobacterium HTCC5015]
 gi|198261048|gb|EDY85349.1| conserved hypothetical protein [gamma proteobacterium HTCC5015]
          Length = 891

 Score = 39.5 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 17/177 (9%)

Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR----FIHIRGVGGSGKSTLMNLIK 522
            E+ D +   F  + V+      +G       + Q     F+ I G  G+GKSTL+  + 
Sbjct: 516 PEWGDALLSAFREQGVIALAY-WLGTLFAEQIREQHKSYPFLEIVGEAGAGKSTLIEFLW 574

Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN---DEINAAKIK 579
              G       + S         A   N + +  +   ++      E     + +  ++K
Sbjct: 575 KLLGRSDYEGFDPS----KATLPARSRNFAQVSNLPVVLIESDRDQEGAKQRQFDWDELK 630

Query: 580 QMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
               G  + AR   N GN   E P      I  N  +   N  +A  +R + + F +
Sbjct: 631 TAYNGRSVRARGVKNGGNDTYEPPFRGAIVISQNAAV---NASEAIIQRIVHLTFTR 684


>gi|226292816|gb|EEH48236.1| arrestin [Paracoccidioides brasiliensis Pb18]
          Length = 573

 Score = 39.5 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 51/190 (26%), Gaps = 15/190 (7%)

Query: 95  RIGQKPKILIPFRMNKE-GIKKKKTTESTQGHLDILGCGQY-FVAYNIHPKTKKEYTWTT 152
            +G+       +R   +      +    T   ++     Q  F   +  P+ K  +  + 
Sbjct: 166 TVGRPQFYKENYRGYADIKFLPIEPPRQTDTGVESYARRQQQFSKVSSIPEKKGLFQKSN 225

Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
           PP    +++ P     D             P    +  +      +     Q    E+ A
Sbjct: 226 PPSLIDLDEEPPKFSVDARLPSPPIITCNEPFPL-RILVKKLNESSETIFLQMIQVELIA 284

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK---------GKEIARRW---SKQGSTY 260
           +      +        W+ + ++  +                   +  R    S    ++
Sbjct: 285 YTHIRAHDLTRSESGSWVIISLSNMNIPLIDGNVPAGKEWKVDSSLWDRIPLPSSVAPSF 344

Query: 261 DEENFNYKWD 270
           D  N +  +D
Sbjct: 345 DTCNISRTYD 354


>gi|295661550|ref|XP_002791330.1| arrestin [Paracoccidioides brasiliensis Pb01]
 gi|226280892|gb|EEH36458.1| arrestin [Paracoccidioides brasiliensis Pb01]
          Length = 573

 Score = 39.5 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 51/190 (26%), Gaps = 15/190 (7%)

Query: 95  RIGQKPKILIPFRMNKE-GIKKKKTTESTQGHLDILGCGQY-FVAYNIHPKTKKEYTWTT 152
            +G+       +R   +      +    T   ++     Q  F   +  P+ K  +  + 
Sbjct: 166 TVGRPQFYKENYRGYADIKFLPIEPPRQTDTGVESYARRQQQFSKVSSIPEKKGLFQKSN 225

Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
           PP    +++ P     D             P    +  +      +     Q    E+ A
Sbjct: 226 PPSLIDLDEEPPKFSVDARLPSPPIITCNEPFPL-RILVKKLNESSETIFLQMIQVELIA 284

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK---------GKEIARRW---SKQGSTY 260
           +      +        W+ + ++  +                   +  R    S    ++
Sbjct: 285 YTHIRAHDLTRSESGSWVIISLSNMNIPLIDGNVPAGKEWKVDSSLWDRIPLPSSVAPSF 344

Query: 261 DEENFNYKWD 270
           D  N +  +D
Sbjct: 345 DTCNISRTYD 354


>gi|225680547|gb|EEH18831.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 573

 Score = 39.5 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 51/190 (26%), Gaps = 15/190 (7%)

Query: 95  RIGQKPKILIPFRMNKE-GIKKKKTTESTQGHLDILGCGQY-FVAYNIHPKTKKEYTWTT 152
            +G+       +R   +      +    T   ++     Q  F   +  P+ K  +  + 
Sbjct: 166 TVGRPQFYKENYRGYADIKFLPIEPPRQTDTGVESYARRQQQFSKVSSIPEKKGLFQKSN 225

Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
           PP    +++ P     D             P    +  +      +     Q    E+ A
Sbjct: 226 PPSLIDLDEEPPKFSVDARLPSPPIITCNEPFPL-RILVKKLNESSETIFLQMIQVELIA 284

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK---------GKEIARRW---SKQGSTY 260
           +      +        W+ + ++  +                   +  R    S    ++
Sbjct: 285 YTHIRAHDLTRSESGSWVIISLSNMNIPLIDGNVPAGKEWKVDSSLWDRIPLPSSVAPSF 344

Query: 261 DEENFNYKWD 270
           D  N +  +D
Sbjct: 345 DTCNISRTYD 354


>gi|227539429|ref|ZP_03969478.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240742|gb|EEI90757.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 294

 Score = 39.5 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 16/156 (10%)

Query: 504 IHIRGVGGSGKSTLMNLIK-YAFGNQYVINAEASDIMQNRPPE--------AGKANPSLI 554
           I + G  G+GK+     I                   + R              A   L 
Sbjct: 71  IILSGDAGTGKTISAEAIADRMLRELKKDGFFLKLSTRVRGEGLHGQMGNLVNDAFSELK 130

Query: 555 RLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGN--TYSESPASFTPFIVPN 611
              G R +     +E D I + +   QM   +               E       F+  N
Sbjct: 131 NQAGKRRIAFLLIDEADAIASTRSTMQMHQEEKAAVNTLIQKIDELRELNGRAILFMSTN 190

Query: 612 KHLFVRNPDDAWWRRY-IVIPFDKPIANRDASFAQK 646
           +  F+   D+A  RR  I++ F++P  +      +K
Sbjct: 191 RLHFL---DEAIIRRAAIILEFERPTFDERKQLFEK 223


>gi|17226300|gb|AAL37721.1|AF416726_1 nonstructural protein NS [goose parvovirus]
          Length = 627

 Score = 39.5 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + +G  L G
Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +    P         + 
Sbjct: 368 FNDCVDKMLIWWEEEKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475


>gi|190888195|gb|ACE95852.1| Rep [Goose parvovirus]
          Length = 627

 Score = 39.5 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 26/181 (14%)

Query: 488 RCVGMALLGGNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
           + +G  L G  K +      I + G   +GK+ +   I +A      +N           
Sbjct: 312 QYIGSILCGWVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN----------- 360

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
                 N      +   ++   E    +++  +  K + GG  +        +    P  
Sbjct: 361 --WTNENFPFNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCTEPTP 417

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKW 658
                  +  + V         R   IP     F   ++++      K+  K   E  KW
Sbjct: 418 VIITSNTDMCMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKW 474

Query: 659 F 659
            
Sbjct: 475 A 475


>gi|60682881|ref|YP_213025.1| hypothetical protein BF3419 [Bacteroides fragilis NCTC 9343]
 gi|60494315|emb|CAH09110.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
          Length = 374

 Score = 39.5 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 14/92 (15%)

Query: 623 WWRRYIVIPF-----DKPIANRDASFAQK--LETKYTLEAKK------WFLKGVKAYISK 669
            +RR   +PF     +  + NR  +  QK      +    +       W  + +      
Sbjct: 86  LFRRQRELPFGSKLQNHALNNRTNAEFQKFFPTADFVPIIRNLTNNRYWINENLLKIKVH 145

Query: 670 GLDVDIPEVCLKAKEEE-RQGTDTYQAWIDDC 700
           G  V+I    ++  +E  +   D++Q +I+ C
Sbjct: 146 GSIVNISNAVIEIIDEYVKAKQDSFQRFIEQC 177


>gi|296242587|ref|YP_003650074.1| ATPase [Thermosphaera aggregans DSM 11486]
 gi|296095171|gb|ADG91122.1| ATPase associated with various cellular activities AAA_5
           [Thermosphaera aggregans DSM 11486]
          Length = 306

 Score = 39.1 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 19/186 (10%)

Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG-------------NQYVINA-- 533
            +    +      R +   G  G+GK+ +   I Y +              ++Y +    
Sbjct: 49  YIVYLTIASFMNNRPVLYEGPPGTGKTEIGEAILYLWSGKTPFILPCSENYDEYRVIGDF 108

Query: 534 -EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
             A  + +    E+    P L  L+    V+I E   + E     +  +     +     
Sbjct: 109 HPAMAMAKGFNEESFIPRPLLAALIMGTGVLIDEIRRSSEEFQNMLLDVIDKRRIIIPEL 168

Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNP-DDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651
               YS+S   F   +  N     +    DA+ RR + + F  P    +     +L+   
Sbjct: 169 -KKVYSQSGDEFQVVLTSNPLDIAQGELSDAFLRRVVRVEFKYPSVEEEYEIV-RLKLGS 226

Query: 652 TLEAKK 657
                +
Sbjct: 227 LFGKLR 232


>gi|309364236|emb|CAR98801.1| hypothetical protein CBG_27264 [Caenorhabditis briggsae AF16]
          Length = 401

 Score = 39.1 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 22/162 (13%)

Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI------ 628
              I ++     +T         S+       F V     FVR+   A  +R +      
Sbjct: 76  ENSINRLVRFRNITLNNLEKLHQSQLIFDLNHFTVSGAVEFVRDISRAMEKRLMDSDEGT 135

Query: 629 ------VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
                 +I F +     +    +K+ET        W        I      +I E+ + A
Sbjct: 136 TSCDMTLITFIEQEKPPEKKIQKKIETPEWFTILTW------TLIPNVGLPEISEMEMLA 189

Query: 683 KEE-ERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSYSEY 721
             E  R+  D+ Q WI+D  +I   L  E+   +     S+Y
Sbjct: 190 INELFRKEEDS-QKWIEDFNEITPLLPVEAIRATFYNRSSQY 230


>gi|195764992|gb|ACG50803.1| putative non-structural protein [Dysaphis plantaginea densovirus]
          Length = 710

 Score = 39.1 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 70/219 (31%), Gaps = 29/219 (13%)

Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTG-----------TPFVEGEPSQEFLDLVSGYF 477
           +  ++    +      +        K T              +      Q   +L+   F
Sbjct: 475 VALRNWCARIREWSVSEFNDYYSSGKITPYFNAYSRDKKQVYYDVQTSVQIAEELLCYQF 534

Query: 478 ESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
           +++ +++  F   V   +      +  + +     +GK+   + +   F N         
Sbjct: 535 DNDGDLISKFLYDVYAIVDKLVPKRNSMCVVSPPSAGKNFFFDAVASYFLNY-------- 586

Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-N 595
                        N S     G R+V+ +E N  +  +  KIK++ GGD     + Y  +
Sbjct: 587 ---GMFGTANKTNNFSWADGAGKRLVLWNEPN-YETFHVEKIKELLGGDTTRVHVKYKGD 642

Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
              + P     F++ N  L +   D A+  R +   +  
Sbjct: 643 QPLQGPP---IFLLTNNTLSI-CNDPAFADRLVTYEWKS 677


>gi|194100566|ref|YP_002003891.1| gp52 [Mycobacterium phage Nigel]
 gi|192758282|gb|ACF05055.1| gp52 [Mycobacterium phage Nigel]
          Length = 929

 Score = 39.1 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/206 (9%), Positives = 43/206 (20%), Gaps = 31/206 (15%)

Query: 35  KWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEI--LHGTP 92
            W ++   + +I             VG   +   D D+  +                   
Sbjct: 122 TWSKKAEDAGEIAMAQPAAVNLAVEVGGSGVVVIDCDTAAQVDRWFEVAEIPEDARPAPT 181

Query: 93  IVRIGQKP---------------KILIPFRMNKEGIKKKKT-----TESTQGHLDILGCG 132
           I+  GQ                      F +  + +          T        IL   
Sbjct: 182 ILTPGQVGPDADINDPSTWAHADGGHFWFTVPDKYLPVLPRHLGAMTWGGDHGFAILWDR 241

Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
           +Y +                     ++     + +   E + +  +              
Sbjct: 242 RYVLIPPSTRPEGAY---------EQLGHVYDMPDWLGEAIMQAGERRVQRAELAAGDRA 292

Query: 193 PSKTWTNNNNRQYTNREITAFLSCFG 218
            +     + +R   N    + L   G
Sbjct: 293 ENPELATHIDRWAENVSWASILEPLG 318


>gi|984264|gb|AAA75285.1| NS1 [Goose parvovirus]
          Length = 461

 Score = 39.1 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + +G  L G
Sbjct: 96  NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 154

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 155 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 201

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +    P         + 
Sbjct: 202 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 260

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 261 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 309


>gi|159146230|gb|ABW90578.1| virulence-associated protein [Bacteriophage APSE-2]
          Length = 378

 Score = 39.1 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 43/152 (28%), Gaps = 15/152 (9%)

Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKE 248
              ++     N    T  ++ + L          ++  W+ +   +A   +T    + K 
Sbjct: 183 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKT 242

Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
           +   WS   +  D E    KW              R+ + ++F    K       A R  
Sbjct: 243 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 294

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
            A        +     L   +   W    +N 
Sbjct: 295 TAVATV--DEFDD---LTNTENSKWPTFKRNK 321


>gi|221057358|ref|XP_002261187.1| Tryptophan/threonine-rich antigen [Plasmodium knowlesi strain H]
 gi|194247192|emb|CAQ40592.1| Tryptophan/threonine-rich antigen, putative [Plasmodium knowlesi
           strain H]
          Length = 578

 Score = 39.1 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 62/213 (29%), Gaps = 17/213 (7%)

Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206
           +Y+W       +      LS ++ ++           +  +++  I   +     +  + 
Sbjct: 359 DYSWGEFNQSVENGKRIWLSNKEKDWEDWLRFMEKKWMHYNERMDIEYNSNLFEISEYWN 418

Query: 207 NREITAFLSCFGEEFYNGSHDEWIPV------VMAVH--HETRGSSKGKEIARRWSKQGS 258
           +++   ++   GE+       +W+        V A     E +       +   W     
Sbjct: 419 DQQWEKWIRTEGEQLMELDWKKWMYENKFSLDVWASKEWSEWKKEKITSWLFCDWKMNEQ 478

Query: 259 TYDEENFNYKWDTFDFEEI------GDTAKKRSTFTSLFYHHGKLI-PKGLLASRFSDAY 311
            Y EE  + KW  F +               R      ++ H K         + +S   
Sbjct: 479 KYWEEWESKKWRKFLYLGERRKWIKWKERTNREWEEWKYWVHKKDNVFVNNKRNCWSKWK 538

Query: 312 NKA--MFSIYKKGHFLYTADTKAWYKKDKNNVY 342
           N+   MF  + K         K W    +   Y
Sbjct: 539 NERRDMFDDWMKPFIEKWIKRKQWNVWKEERNY 571


>gi|159146220|gb|ABW90573.1| virulence-associated protein [Bacteriophage APSE-2]
          Length = 378

 Score = 39.1 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 43/152 (28%), Gaps = 15/152 (9%)

Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKE 248
              ++     N    T  ++ + L          ++  W+ +   +A   +T    + K 
Sbjct: 183 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKT 242

Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
           +   WS   +  D E    KW              R+ + ++F    K       A R  
Sbjct: 243 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 294

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
            A        +     L   +   W    +N 
Sbjct: 295 TAVATV--DEFDD---LTNTENSKWPTFKRNK 321


>gi|15625518|gb|AAL04136.1|AF410775_12 unknown [Staphylococcus aureus subsp. aureus COL]
          Length = 474

 Score = 39.1 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 55/188 (29%), Gaps = 34/188 (18%)

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +    V      G K    I + G  G GKST    +    G+ Y  + +         
Sbjct: 153 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 202

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
               K +    +L GS I  I E +   +     IK          R +YG      P  
Sbjct: 203 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 258

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVI----------PFD--------KPIANRDASFAQ 645
                  N + F+++      RR+  I          PFD        +  A     F +
Sbjct: 259 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAKVYFDE 316

Query: 646 KLETKYTL 653
               K  L
Sbjct: 317 DPTDKALL 324


>gi|282920040|ref|ZP_06327768.1| hypothetical protein SASG_02682 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316211|gb|EFB46591.1| hypothetical protein SASG_02682 [Staphylococcus aureus subsp.
           aureus C427]
          Length = 489

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 54/175 (30%), Gaps = 22/175 (12%)

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +    V      G K    I + G  G GKST    +    G+ Y  + +         
Sbjct: 164 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
               K +    +L GS I  I E +   +     IK          R +YG      P  
Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK------PIANRDASFAQKLETKYT 652
                  N + F+++      RR+  I  DK      P  +      Q++  +  
Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAK 322


>gi|57650170|ref|YP_185768.1| hypothetical protein SACOL0897 [Staphylococcus aureus subsp. aureus
           COL]
 gi|282928953|ref|ZP_06336541.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|57284356|gb|AAW36450.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|282591871|gb|EFB96912.1| conserved hypothetical protein [Staphylococcus aureus A9765]
          Length = 485

 Score = 38.7 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 55/188 (29%), Gaps = 34/188 (18%)

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +    V      G K    I + G  G GKST    +    G+ Y  + +         
Sbjct: 164 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
               K +    +L GS I  I E +   +     IK          R +YG      P  
Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVI----------PFD--------KPIANRDASFAQ 645
                  N + F+++      RR+  I          PFD        +  A     F +
Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAKVYFDE 327

Query: 646 KLETKYTL 653
               K  L
Sbjct: 328 DPTDKALL 335


>gi|221141895|ref|ZP_03566388.1| hypothetical protein SauraJ_09730 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|304381549|ref|ZP_07364199.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|269940401|emb|CBI48778.1| pathogenicity island protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|302750728|gb|ADL64905.1| pathogenicity island protein [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304339912|gb|EFM05856.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|329314704|gb|AEB89117.1| Pathogenicity island protein [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 485

 Score = 38.7 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 54/175 (30%), Gaps = 22/175 (12%)

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +    V      G K    I + G  G GKST    +    G+ Y  + +         
Sbjct: 164 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
               K +    +L GS I  I E +   +     IK          R +YG      P  
Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK------PIANRDASFAQKLETKYT 652
                  N + F+++      RR+  I  DK      P  +      Q++  +  
Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAK 322


>gi|190888192|gb|ACE95850.1| Rep [Goose parvovirus]
          Length = 627

 Score = 38.7 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + +G  L G
Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +    P         + 
Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475


>gi|160415349|gb|ABX38993.1| non-structural protein [Goose parvovirus]
          Length = 627

 Score = 38.7 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + +G  L G
Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +    P         + 
Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475


>gi|154201543|gb|ABS71119.1| NS1 [Goose parvovirus]
          Length = 627

 Score = 38.7 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + +G  L G
Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +    P         + 
Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475


>gi|315658818|ref|ZP_07911685.1| virulence-associated protein E [Staphylococcus lugdunensis M23590]
 gi|315495942|gb|EFU84270.1| virulence-associated protein E [Staphylococcus lugdunensis M23590]
          Length = 488

 Score = 38.7 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 54/175 (30%), Gaps = 22/175 (12%)

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +    V      G K    I + G  G GKST    +    G+ Y  + +         
Sbjct: 164 KWMMGAVARLYQPGIKYDCMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
               K +    +L GS I  I E +   +     IK          R +YG      P  
Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK------PIANRDASFAQKLETKYT 652
                  N + F+++      RR+  I  DK      P  +      Q++  +  
Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAK 322


>gi|9628650|ref|NP_043514.1| REP [Goose parvovirus]
 gi|1113796|gb|AAA83229.1| REP [Goose parvovirus]
          Length = 627

 Score = 38.7 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + +G  L G
Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +    P         + 
Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475


>gi|329732264|gb|EGG68614.1| Virulence-associated protein E [Staphylococcus aureus subsp. aureus
           21193]
          Length = 465

 Score = 38.7 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 54/175 (30%), Gaps = 22/175 (12%)

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +    V      G K    I + G  G GKST    +    G+ Y  + +         
Sbjct: 140 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 189

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
               K +    +L GS I  I E +   +     IK          R +YG      P  
Sbjct: 190 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 245

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK------PIANRDASFAQKLETKYT 652
                  N + F+++      RR+  I  DK      P  +      Q++  +  
Sbjct: 246 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAK 298


>gi|15828792|ref|NP_326152.1| oligoendopeptidase F [Mycoplasma pulmonis UAB CTIP]
 gi|18202665|sp|Q98QP0|PEPF_MYCPU RecName: Full=Oligoendopeptidase F homolog
 gi|14089735|emb|CAC13494.1| OLIGOENDOPEPTIDASE F [Mycoplasma pulmonis]
          Length = 613

 Score = 38.7 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 41/349 (11%), Positives = 102/349 (29%), Gaps = 29/349 (8%)

Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210
               ++  +E    +++  ++     +++    + K KK  +  +           N E+
Sbjct: 111 IGDENQRILEHEEKITKWLLDPRLASYKKALDFVFKSKKHRLSKEVEDYLIKVSRGNIEL 170

Query: 211 TAFLSCFGEEFYNGSH----DEWIPVVMAVHHETRGSSKGKE-----IARRWSKQGSTYD 261
                       +  +    D    + + + +         E         W+K  + + 
Sbjct: 171 YKVYGILTNSELDYGYALSSDGKRKIEINLSNRFNLLKDQDENIRKTTYLNWNKASAKHK 230

Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY-NKAMFSIYK 320
           E   +  +  F        A+  S+ T   +     + + LL + +     NK +F  Y 
Sbjct: 231 ETLSSLLYQHFSKLSADALARGYSS-TVNSFLFEDQVDEKLLKNLYDKVSSNKKVFQKYY 289

Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
           + +       K +++K  +           I   ++              EE +D    S
Sbjct: 290 QNY-------KKFFEKKNSKQME----AWDIYLPLVVVDEKYS------IEEAQDLVLKS 332

Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
             P         ++            ++  +G+    ++  +D     +   DG L+  +
Sbjct: 333 LEPMGSEYISKVKEAFSSRWVDYLPVKNKRSGAYSIGSTHGIDKKFILMNF-DGTLNSVS 391

Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
               +    ++   S  T          FL  ++  F    + DY    
Sbjct: 392 TLSHEMGHSMHSYFSDKTQPQSLSSYPIFLAEIASIFNELMLKDYLLEV 440


>gi|190888198|gb|ACE95854.1| Rep [Goose parvovirus]
          Length = 627

 Score = 38.7 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + +G  L G
Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +    P         + 
Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475


>gi|291286215|ref|YP_003503031.1| hypothetical protein Dacet_0273 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883375|gb|ADD67075.1| hypothetical protein Dacet_0273 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 203

 Score = 38.7 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 50/173 (28%), Gaps = 19/173 (10%)

Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
            + F D +      +E+           L    +    +   G  G+GK++    I    
Sbjct: 1   MKTFNDFLFTSELKKELK--------YLLDTPERIPSPLCFYGRPGNGKTSFAEYIAKTL 52

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
            ++            N   + G ++  L+R + +   + + ++E+  +    I       
Sbjct: 53  CSEVC------YYDMNEYKKNGASSGELLRAVNNYASMATLSDESKPLGKCIILDEWHNA 106

Query: 586 CMTARLNYGNTYSESPASFTPFIVPN-----KHLFVRNPDDAWWRRYIVIPFD 633
             + +  Y   +           +       +    +    A   R   I F+
Sbjct: 107 THSQQDAYKVPFETYSQKANVLFILCLNTDWELPIEKALSPAIKSRCHCISFN 159


>gi|85057689|ref|YP_456605.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789794|gb|ABC65526.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 701

 Score = 38.7 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 92/333 (27%), Gaps = 36/333 (10%)

Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
           K+ +  + ++ +     SKS   +  T++R      N       Q L+     +  +  +
Sbjct: 149 KQTLELIEQKKQLLTTKSKSKEQFKETNFRIIKNNNNLFITKKIQGLQKTMALNDANKNI 208

Query: 423 DSSSRFLGEQD-------GILDLETGQKVKPT-------KELYITKSTGTPFVEGEPSQE 468
                   + +          DL    ++          +E   +      +   +    
Sbjct: 209 IKDLMIQNKDNTEEFQKLKSYDLFLDGQLIHFDKQIKQLQEEIKSLQNNISYHSPKQKVM 268

Query: 469 FLDL--VSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
           F D+  +    E  E++++YF       +       R   + G  G+GKS L+  +    
Sbjct: 269 FSDIYGLKQEKEELEDLIEYFQDDDFDMVNFDKVIPRGYLLYGPPGTGKSFLIEALCNEL 328

Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSRIVIISETNENDEINAAKIKQMT 582
           G  Y++  E S   +    E  +    +          I+ I E +             T
Sbjct: 329 GTHYIV-LEPSRFEKTYVGEGNEELEKIWQEAESHKKTIIFIDEIS-GLANREDNQSNKT 386

Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
             + +   L   + +  S          N    +   D A   R+               
Sbjct: 387 SINIVNNLLTKLDGFKRSDKKIVLMGATNHLDKI---DSALRSRFS--------KEIKID 435

Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
             +           ++ +   K      + +  
Sbjct: 436 LLKD---DEIEGFLQFLVTDYKIIYQTYIHLKE 465


>gi|123449352|ref|XP_001313396.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
 gi|121895278|gb|EAY00467.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
          Length = 454

 Score = 38.7 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 46/158 (29%), Gaps = 13/158 (8%)

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
              G     + I + G  G+GKS L   +         +    SD+      E+ K   S
Sbjct: 169 MFKGPTVPWKGILLYGPPGTGKSFLAKAVAGEANQSTFLTVSTSDLTSKWVGESEKLIKS 228

Query: 553 LIRLMGSRIVIISETNENDEI--NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
           L +        I   +E D +  +  +      G  M               +    I  
Sbjct: 229 LFQTARQSKPSIVFIDEIDSLVGDRGEDNSTEAGRRMKTEFLIQMDGVGVDNTGIIIIAA 288

Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFA 644
                    D A  RR     F+K +     ++DA  A
Sbjct: 289 TNLP--WAIDPAMRRR-----FEKRVYVPLPDKDARMA 319


>gi|251795707|ref|YP_003010438.1| glycoside hydrolase family 43 [Paenibacillus sp. JDR-2]
 gi|247543333|gb|ACT00352.1| glycoside hydrolase family 43 [Paenibacillus sp. JDR-2]
          Length = 298

 Score = 38.7 bits (88), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/138 (9%), Positives = 36/138 (26%), Gaps = 5/138 (3%)

Query: 57  VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
             G       A D D    +        F        +++       +     +    + 
Sbjct: 118 PTGEWNNGR-AIDADVIVHEDCLLL--YFATRDPKGEIQMQGVAAAPLHSEYGQADWTQI 174

Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
            +    +   ++   G+   A  +H +  + Y +    +  + +        D  +  + 
Sbjct: 175 CSESILKP--ELDWEGKCIEAAGMHKRNGQLYMFYAGAYNNEPQQIGCAVSRDGVHWERL 232

Query: 177 FQEITVPLVKDKKSIIPS 194
           F E  +P  +        
Sbjct: 233 FTEPLLPCGEPGSWNSSE 250


>gi|159146222|gb|ABW90574.1| virulence-associated protein [Bacteriophage APSE-2]
 gi|159146224|gb|ABW90575.1| virulence-associated protein [Bacteriophage APSE-2]
 gi|159146226|gb|ABW90576.1| virulence-associated protein [Bacteriophage APSE-2]
          Length = 385

 Score = 38.7 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 16/158 (10%)

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243
                   ++     N    T  ++ + L          ++  W+ +   +A   +TR  
Sbjct: 184 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFE 243

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
            + K +   WS   +  D E    KW              R+ + ++F    K       
Sbjct: 244 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 295

Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNN 340
           A R   A      F            +   W    +N 
Sbjct: 296 AERLKTAVATVDEFDDLTDPT-----ENSKWPTFKRNR 328


>gi|15923781|ref|NP_371315.1| hypothetical protein SAV0791 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156979118|ref|YP_001441377.1| hypothetical protein SAHV_0787 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255005581|ref|ZP_05144182.2| hypothetical protein SauraM_03900 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|14246560|dbj|BAB56953.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156721253|dbj|BAF77670.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
          Length = 489

 Score = 38.7 bits (88), Expect = 4.3,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 16/147 (10%)

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +    V      G K    I + G  G GKST    +    G+ Y  + +         
Sbjct: 164 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
               K +    +L GS I  I E +   +     IK          R +YG      P  
Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVI 630
                  N + F+++      RR+  I
Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPI 294


>gi|325288111|ref|YP_004263901.1| hypothetical protein Celly_3213 [Cellulophaga lytica DSM 7489]
 gi|324323565|gb|ADY31030.1| hypothetical protein Celly_3213 [Cellulophaga lytica DSM 7489]
          Length = 583

 Score = 38.7 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 3/100 (3%)

Query: 173 LFKFFQEIT-VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
           + K F     + + K+      +   TN       + E              GS+  W  
Sbjct: 1   MTKIFNPKDWLEVPKEPTKPKSNTATTNVVAVADNDIESYISAIEQSGTDITGSYATWRD 60

Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
           +  A+  E R    G++   R SK  + YD +  + ++D 
Sbjct: 61  LGFALAEEYR--ETGRDYFHRISKNYAGYDAKECDAQFDK 98


>gi|321473310|gb|EFX84278.1| hypothetical protein DAPPUDRAFT_209675 [Daphnia pulex]
          Length = 443

 Score = 38.3 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 44/167 (26%), Gaps = 21/167 (12%)

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KAN 550
             G     + I + G  G+GKS L   +     N    +  +SD++     E+    +  
Sbjct: 159 FTGKRTPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVRNL 218

Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
             L R     IV I E +      +    +      +                    +  
Sbjct: 219 FELARAHKPSIVFIDEIDSLCSTRSEN--ESESARRIKTEFLIQMQGVGKDQQGILVLAA 276

Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
               +V   D A  RR     F+K I          +          
Sbjct: 277 TNIPWV--LDSAIRRR-----FEKRI---------YIPLPEEPARLN 307


>gi|159146232|gb|ABW90579.1| virulence-associated protein [Bacteriophage APSE-2]
          Length = 385

 Score = 38.3 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 16/158 (10%)

Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243
                   ++     N    T  ++ + L          ++  W+ +   +A   +TR  
Sbjct: 184 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFE 243

Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303
            + K +   WS   +  D E    KW              R+ + ++F    K       
Sbjct: 244 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 295

Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNN 340
           A R   A      F            +   W    +N 
Sbjct: 296 AERLKTAVATVDEFDDLTDPT-----ENSKWPTFKRNK 328


>gi|115803072|ref|XP_783803.2| PREDICTED: similar to Psmc6 protein [Strongylocentrotus purpuratus]
 gi|115934021|ref|XP_001193421.1| PREDICTED: similar to Psmc6 protein [Strongylocentrotus purpuratus]
          Length = 501

 Score = 38.3 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 85/300 (28%), Gaps = 32/300 (10%)

Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV------ 396
           ++ ++ +       + +  + E + +L E  E    N +       T  +   +      
Sbjct: 119 VYHMSHEDPGDISYSAIGGLAEQIRELREVIELPLLNPELFERVGITPPKGCLLYGAPGT 178

Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
            +   A++ A  L+A  +  ++S ++D    ++GE   ++             +      
Sbjct: 179 GKTLLARAVASQLDANFLKVVSSAIVDK---YIGESARLIREMFAYARDHEPCVVFMDEI 235

Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGV 509
                             G     E+       + + LL        G    +   + G 
Sbjct: 236 DAIGG--------RRFSEGTSADREIQRTLMEVIELPLLNPELFERVGITPPKGCLLYGA 287

Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN--PSLIRLMGSRIVIISET 567
            G+GK+ L   +       ++    ++ + +     A       +  R     +V + E 
Sbjct: 288 PGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARDHEPCVVFMDEI 347

Query: 568 NE--NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
           +       +            +   L       ++       +  N+   +   D A  R
Sbjct: 348 DAIGGRRFSEGTSADREIQRTLM-ELLNQMDGFDTLGKVKIIMATNRPDTL---DPALLR 403


>gi|18266765|gb|AAL67615.1| orf15 [Staphylococcus aureus]
          Length = 477

 Score = 38.3 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 16/147 (10%)

Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
            +    V      G K    I + G  G GKST    +    G+ Y  + +         
Sbjct: 156 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 205

Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
               K +    +L GS I  I E +   +     IK          R +YG      P  
Sbjct: 206 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 261

Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVI 630
                  N + F+++      RR+  I
Sbjct: 262 CVFVGTTNNYEFLKDQTG--NRRFFPI 286


>gi|330928889|ref|XP_003302443.1| hypothetical protein PTT_14248 [Pyrenophora teres f. teres 0-1]
 gi|311322209|gb|EFQ89453.1| hypothetical protein PTT_14248 [Pyrenophora teres f. teres 0-1]
          Length = 938

 Score = 38.3 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/223 (8%), Positives = 54/223 (24%), Gaps = 24/223 (10%)

Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG--- 322
           +  ++           +  + +        +           S   +   + I +     
Sbjct: 396 DEAFNYGRKARTRLLGEDDAAYARRRKAWDEHARNANGDRDGSHQSDSGRWEIGEHEAEL 455

Query: 323 ----HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
                 +       W+  +              T +       +K    DL  + +    
Sbjct: 456 TWYIKVVVVFGEIVWWSCNSGRRQEGKTPPWNPTTTFKKLEDKLKRLKRDLPNDLQLTPD 515

Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438
           N++              V  N     +  ++       +  + + +S   L    G LD 
Sbjct: 516 NTE------------DRVFTNPGKYVSIHAMYTLCFIWLYREYMPTSPWALARPVGPLDE 563

Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESE 480
              +   P  + +I +         +   +F +L+    F   
Sbjct: 564 PIIEDTPPEPDYWINQ----ARDCAKACSDFTNLLHKIGFPKA 602


>gi|221060396|ref|XP_002260843.1| ATP-dependent protease [Plasmodium knowlesi strain H]
 gi|193810917|emb|CAQ42815.1| ATP-dependent protease, putative [Plasmodium knowlesi strain H]
          Length = 1031

 Score = 38.3 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 85/291 (29%), Gaps = 23/291 (7%)

Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
            L+ MK+++    +     N+  +           ++ + E +  +       A      
Sbjct: 336 LLLKMKKELSTNLKNK--FNEEKEKLMIRECISNLKKKIGEKTDHEILCDKFFAKFQLKK 393

Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE----FLDLV 473
           +    ++S   L E +             +   Y+      PF +     E       ++
Sbjct: 394 SHMDKEASDTILRELNKFSLYNEHCNDYASTYQYLNTVLSIPFGKYASLCEDISGCERIL 453

Query: 474 SGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF------G 526
           +   +   +V  Y    VG+ +L  N   + + + G  G GK+++   I  A        
Sbjct: 454 TQSHYGLHQVKKYILEYVGLYILNKNVKPKILTLVGYPGIGKTSICKSISSALQLPHYVI 513

Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRL----MGSRIVIISETNENDEINAAKIKQMT 582
           N   I      I   R          +  L    + + ++++ E ++    NA     + 
Sbjct: 514 NMNNITNMNELIGHRRTYVNSYEGKIIQALISTEVMNPLIVLDELDKISFSNANIYTTLL 573

Query: 583 GGDCMTARLNYGNTYSESPA---SFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
                +    Y + Y   P            N    +         R  ++
Sbjct: 574 NLFDSSQNKGYKDVYVNFPINLEKAFFVCTANSVEDIPET---LLDRMEIV 621


>gi|269975302|gb|ACZ55526.1| primase [Staphylococcus phage SA1]
          Length = 326

 Score = 38.3 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 20/149 (13%)

Query: 487 TRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
              +   +    K     + IRG  GSGKSTL  L+    G + V     + +       
Sbjct: 1   MDWMAWIIQHPTKRINYSLLIRGAHGSGKSTLGVLMSAMLGRKNVGYVSNTVMNGRFSDW 60

Query: 546 AGKANPSLIRLMGSRIVIISET-NENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPAS 603
           A           G  + I+ E  ++ D  +A  + K+    D                 S
Sbjct: 61  A----------EGDILKIVEEVYDKGDRYSAIERQKEYITNDRFQVEPKGRKPKVVVNTS 110

Query: 604 FTPFIVP--NKHLFVRNPDDAWWRRYIVI 630
                    N      N      RRY+V+
Sbjct: 111 SKMMFTNHFNALPLDENQ-----RRYLVV 134


>gi|126465918|ref|YP_001041027.1| ATPase [Staphylothermus marinus F1]
 gi|126014741|gb|ABN70119.1| ATPase associated with various cellular activities, AAA_5
           [Staphylothermus marinus F1]
          Length = 305

 Score = 38.3 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 4/127 (3%)

Query: 512 SGKSTLMNLIKYAFGNQYVINA--EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
           SGKS  +      +    VI     A  + +    E+    P L  L+    V+I E   
Sbjct: 86  SGKSAFILPCSENYDEYRVIGDFHPAMAMAKGFNEESFIPRPLLAALILDTGVLIDEIRR 145

Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH-LFVRNPDDAWWRRYI 628
           ++E     +  +     +         Y +    F      N   +   +  DA+ RR +
Sbjct: 146 SNEDFQNLLLDIIDKRRIIIPEL-KKVYVQRGHGFQIIFTSNPLDIAQSDLSDAFLRRVV 204

Query: 629 VIPFDKP 635
            I F  P
Sbjct: 205 RIEFKYP 211


>gi|330503074|ref|YP_004379943.1| DNA primase-like protein [Pseudomonas mendocina NK-01]
 gi|328917360|gb|AEB58191.1| DNA primase-like protein [Pseudomonas mendocina NK-01]
          Length = 949

 Score = 38.3 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 70/559 (12%), Positives = 156/559 (27%), Gaps = 69/559 (12%)

Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
           P   + +++ P+      +++ +                     W + + R     +   
Sbjct: 226 PTLVWALDNEPVARSYTRKWVKQARAMGFTCEAALIPQKGKKTDWNDLHQRWAFIDDAEQ 285

Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI--ARRWSKQGSTYDEENFNYKWD 270
             +    +     +   + +          S KG  I     W +    +D       W 
Sbjct: 286 RAARVTADLEEARYQGALLIAE------NASEKGLLIYQRNEWKEFHFGFDNR---MYWW 336

Query: 271 TFDFEEIGDTA---KKRSTFTSLFYHHGKLIPKGL-LASRFSDAYNKAMFSIYKKGHFLY 326
           + D ++        +           + ++  K L L+   ++  N    ++Y   +   
Sbjct: 337 SLDLDKYNKAIQAIEGDDNGADRELSNKEIREKALRLSGSVNEIANCYFEALY---YQRN 393

Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
               ++WY    +  +      +  T+S        K+ +  ++          +  +  
Sbjct: 394 DITDESWYYLRVDFPHGGPSVKNTFTSSHTTSAGEFKKRLHGMAAGAMFTGTGQQLEKIM 453

Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVK 445
               Y  + VE       + +                     +  +DG + +       +
Sbjct: 454 KLQTYGIKTVETIDFVGYSKEHGCYVFGD-------------IAVKDGQVYEANAEDFFE 500

Query: 446 PTKELYITKSTGTPFVE----GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501
             K+   T   G            S E+  L+   F ++  +       G       +A+
Sbjct: 501 FGKQRIKTLQKGVTIRPSRDAKAYSSEWFKLLWTCFGAQGAVALVW-FFGSLFCEQIRAR 559

Query: 502 RFIH----IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
                     G  G+GK+TL+NL+    G       +     +         +  + ++ 
Sbjct: 560 WQSFPFLEATGEAGAGKTTLLNLLWKLLGRPGYEGFDPMKSTK------AGRSRLMAQVA 613

Query: 558 GSRIVIISETNEND------EINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIV 609
           G  +V +     +D           ++K   GG  +  +     GN   E P   T  I 
Sbjct: 614 GMPVVYLEADRHSDDKPHAKTFEWDELKDFFGGGTLATKGVKTAGNETYEPPFRGTIAIS 673

Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDK-PIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
            N  +      +A   R   + F +  +     + A KL          + L+ +KA   
Sbjct: 674 QNAAVVAH---EAIMTRICKLHFVRPQVTPESRAAADKLNALDGDVLSHFLLQAIKAE-- 728

Query: 669 KGLDVDIPEVCLKAKEEER 687
                      L A  E  
Sbjct: 729 --------AGVLDAFAEYF 739


>gi|14590135|ref|NP_142199.1| proteasome-activating nucleotidase [Pyrococcus horikoshii OT3]
 gi|20532203|sp|O57940|PAN_PYRHO RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
           AltName: Full=Proteasomal ATPase; AltName:
           Full=Proteasome regulatory ATPase; AltName:
           Full=Proteasome regulatory particle
 gi|3256587|dbj|BAA29270.1| 399aa long hypothetical 26S protease regulatory subunit [Pyrococcus
           horikoshii OT3]
          Length = 399

 Score = 38.3 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 85/308 (27%), Gaps = 48/308 (15%)

Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
           +++  +K  +  L  +      + +      +      +                 +   
Sbjct: 17  DYITYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQ-----------PPAFAG 65

Query: 417 ITSDLLDSSSRFLGEQDG---IL----DLETGQKVKPTKELYITKSTGT-PFVEGEPSQE 468
              ++LD     +   +G   ++     ++  +    T+     ++      +       
Sbjct: 66  TVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPT 125

Query: 469 FLDL---------VSGYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGS 512
            L            +     ++ +      + + L         G    + + + G  G 
Sbjct: 126 VLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGC 185

Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
           GK+ +   + +     ++    +  + +    E  +    L  L   +   I   +E D 
Sbjct: 186 GKTLMAKALAHEVNATFIRVVGSELV-RKYIGEGARLVHELFELAKEKAPTIIFIDEIDA 244

Query: 573 INAAKIKQMTGGDCMTARLNYG--NTYSESPA--SFTPFIVPNKHLFVRNPDDAWWR--- 625
           I A ++ + TGG+    R                +       N+   +   D A  R   
Sbjct: 245 IGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDIL---DPALLRPGR 301

Query: 626 --RYIVIP 631
             R I +P
Sbjct: 302 FDRLIEVP 309


>gi|322689662|ref|YP_004209396.1| hypothetical protein BLIF_1479 [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460998|dbj|BAJ71618.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 486

 Score = 38.3 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 22/265 (8%), Positives = 70/265 (26%), Gaps = 15/265 (5%)

Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229
           ++  ++  +        +      +        R     +  A  +  G+     S  + 
Sbjct: 169 LKAQYEELKAAGEAKKTEIAEARKAAQARAVAERTAIVEKAEALAASLGDNTNWRSTADK 228

Query: 230 IP---VVMAVHHETR---GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
                     H  T       + + + +R+S   +T+++     KW      E     + 
Sbjct: 229 FRNLFDEWQNHQRTTVRIDKPEAEALWKRFSAARTTFNQAR--RKWAQARDNERTAAKEA 286

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS----IYKKGHFLYTADT--KAWYKKD 337
           +    +           G  + +F+D  ++   +      +              ++   
Sbjct: 287 KEAIIAEANELKDSTAWGETSRKFNDLMDRWKKAGRAGRNEDDELWAKFREAADTFFNAR 346

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
           + +    + + +K   +    L+   E +  +  + E      +  +     D       
Sbjct: 347 QADRDQINSS-EKENLAAKEALLVKAEALVPVKTDAEAKKARQELAKIQEEWDQIGYVPR 405

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLL 422
           ++ +            I +I     
Sbjct: 406 DDMRRIENRLDAVDKQIKAIEDAAW 430


>gi|40795864|gb|AAR91602.1| NS protein [Goose parvovirus]
          Length = 627

 Score = 37.9 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + +G  L G
Sbjct: 262 NRQVKAALENARAEMLLTKTTTDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +    P         + 
Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475


>gi|296392562|ref|YP_003657446.1| hypothetical protein Srot_0125 [Segniliparus rotundus DSM 44985]
 gi|296179709|gb|ADG96615.1| hypothetical protein Srot_0125 [Segniliparus rotundus DSM 44985]
          Length = 711

 Score = 37.9 bits (86), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 40/170 (23%), Gaps = 9/170 (5%)

Query: 184 LVKDKKSIIPSKTWTNNNNRQYT-NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242
                        W++      T N++   +     + FY  + D+W    +  ++    
Sbjct: 185 ADISNPPGEADPDWSDPTPAAATLNQQELGYYDPTWDTFYGYNRDDWHRWGLDGYNPYGY 244

Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
              G +           +  +   Y    +++         R       +H       G 
Sbjct: 245 DYTGYDRYGYDRAGYDRWGYDRRGYDRYGYNYAGWRYDPISRMG-----WHRDGYNEWGQ 299

Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK-NNVYIWSLTLDKI 351
                 D  N      +   +  Y      WY  D     + W       
Sbjct: 300 RQGHPDDPRNAGWRDKWYNRYQGY--YENRWYYNDPVYQRHQWDRDRWLR 347


>gi|255522028|ref|ZP_05389265.1| hypothetical protein LmonocFSL_12550 [Listeria monocytogenes FSL
           J1-175]
          Length = 113

 Score = 37.9 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 20  LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76
            IP+   D           W +   + + ++K    G GF     ++P +  DID   ++
Sbjct: 31  KIPMNANDGSYGNSVDERTWADFETALDSLEKYQFDGLGFYF---KKPYFGVDIDDIKDE 87

Query: 77  TANTFKDTFEILHGTPIVRIGQ 98
             +      E + G  I  +  
Sbjct: 88  IEDYLYGNTENIAGEFIQTLSS 109


>gi|111226818|ref|XP_001134596.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
 gi|90970786|gb|EAS66912.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4]
          Length = 330

 Score = 37.9 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 15/159 (9%)

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK---ANPSLIRLM 557
            + I + G  G+GK+ L   I Y  G    +  + S +      E  K   A  S+ + +
Sbjct: 120 PKGILLYGPPGTGKTMLAKAISYHCG-YNFLVIDNSMLDSKWYGETEKMVSAMFSVAKKL 178

Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
              I+ I E +           + T     +  L + + +  S       +         
Sbjct: 179 QPTIIFIDEIDSMVSTREDSENE-TSNSKKSILLQHWDGFFSSGNDKVIVMGATNRP--N 235

Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
           + D A+ RR                   K + K+ L+  
Sbjct: 236 SIDYAFLRRL--------PKRIKVDLPDKDQRKHILQIM 266


>gi|145694447|gb|ABP93843.1| NS2 [Goose parvovirus]
          Length = 451

 Score = 37.9 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G        + +  ++  ++ +Y  + VG  L G
Sbjct: 86  NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDIIKNRVYQILKMNNYNPQYVGSILCG 144

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 145 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAIPFYGCVN-------------WTNENFP 191

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +              + 
Sbjct: 192 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIETTPVIITSNTDM 250

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 251 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 299


>gi|159146234|gb|ABW90580.1| virulence-associated protein [Bacteriophage APSE-2]
          Length = 378

 Score = 37.9 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 42/152 (27%), Gaps = 15/152 (9%)

Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH--HETRGSSKGKE 248
              ++     N    T  ++ + L          ++  W+ +   +    +T    + K 
Sbjct: 183 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWVKDTHFEDEAKT 242

Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
           +   WS   +  D E    KW              R+ + ++F    K       A R  
Sbjct: 243 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 294

Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
            A        +     L   +   W    +N 
Sbjct: 295 TAVATV--DEFDD---LTNTENSKWPTFKRNK 321


>gi|239620719|ref|ZP_04663750.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239516295|gb|EEQ56162.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 486

 Score = 37.9 bits (86), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/265 (8%), Positives = 70/265 (26%), Gaps = 15/265 (5%)

Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229
           ++  ++  +        +      +        R     +  A  +  G+     S  + 
Sbjct: 169 LKAQYEELKAAGEAKKTEIAEARKAAQAKAVAERTAIVEKAEALAASLGDNTNWRSTADK 228

Query: 230 IP---VVMAVHHETR---GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
                     H  T       + + + +R+S   +T+++     KW      E     + 
Sbjct: 229 FRNLFDEWQNHQRTTVRIDKPEAEALWKRFSAARTTFNQAR--RKWAQARDNERTAAKEA 286

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS----IYKKGHFLYTADT--KAWYKKD 337
           +    +           G  + +F+D  ++   +      +              ++   
Sbjct: 287 KEAIIAEANELKDSTAWGETSRKFNDLMDRWKKAGRAGRNEDDELWAKFREAADTFFNAR 346

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
           + +    + + +K   +    L+   E +  +  + E      +  +     D       
Sbjct: 347 QADRDQINSS-EKENLAAKEALLVKAEALVPVKTDAEAKKARQELAKIQEEWDQIGYVPR 405

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLL 422
           ++ +            I +I     
Sbjct: 406 DDMRRIENRLDAVDKQIKAIEDAAW 430


>gi|282163672|ref|YP_003356057.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE]
 gi|282155986|dbj|BAI61074.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE]
          Length = 412

 Score = 37.9 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 11/146 (7%)

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
           G +  + + + G  G+GK+ L   + ++    ++    +  + +     A          
Sbjct: 184 GIQPPKGVLLYGPPGTGKTLLAKAVAHSTKASFIRIIGSELVQKYIGEGARMVRELFELA 243

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG--NTYSESPASFTP-FIVPNKH 613
                 II   +E D I A ++  +T GD    R                    +     
Sbjct: 244 KEKSPSII-FIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNR 302

Query: 614 LFVRNPDDAWWR-----RYIVIPFDK 634
             +   D A  R     R I +P   
Sbjct: 303 PDI--LDPALLRPGRFDRIIKVPMPN 326


>gi|302392147|ref|YP_003827967.1| ATPase AAA [Acetohalobium arabaticum DSM 5501]
 gi|302204224|gb|ADL12902.1| AAA ATPase central domain protein [Acetohalobium arabaticum DSM
           5501]
          Length = 339

 Score = 37.9 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 17/188 (9%)

Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
              +++ Y+ + ++        G  L    +    I   G  G GK+     +       
Sbjct: 107 INRIMAEYYGANQLR-------GYNLNAKRR----ILFCGPPGCGKTMTAQSLANEINLP 155

Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
            +     S I       A             R VI    +E D I  ++  +   G+   
Sbjct: 156 LLYIHMDSLISSYLGDTASNLRKIFQYAEQGRWVIFF--DEFDTIGKSRDDENEHGELKR 213

Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-IVIPFDKPIANRDASFAQKL 647
           A   +                 N    +   D+A WRR+  ++ FDKP   +     +K 
Sbjct: 214 AVNTFLQMLDNFKTETLLIAATNHQHLL---DNAIWRRFDEIVYFDKPDIEQIQKLLKKK 270

Query: 648 ETKYTLEA 655
              +  E 
Sbjct: 271 LRTFKSEI 278


>gi|281211293|gb|EFA85458.1| AAA ATPase domain-containing protein [Polysphondylium pallidum
           PN500]
          Length = 442

 Score = 37.9 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 46/161 (28%), Gaps = 13/161 (8%)

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKAN 550
              G  K  + I + G  G+GKS L   +     + +   + +  + +      +  K  
Sbjct: 159 MFTGKRKPWKGILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQL 218

Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
             + R   + ++ + E +        +  +      +            + +     +  
Sbjct: 219 FEMARAANNSVIFVDEIDSLCSSRNDQ--ESESSRRIKTEFLIQLDGVGNDSDGVLILAA 276

Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKP--IANRDASFAQKLET 649
                    D A  RR     F+K   I   D     K+  
Sbjct: 277 TNIP--WGLDLAIRRR-----FEKRIYIPLPDPHARIKMFQ 310


>gi|322691623|ref|YP_004221193.1| hypothetical protein BLLJ_1434 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456479|dbj|BAJ67101.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 486

 Score = 37.9 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 22/265 (8%), Positives = 70/265 (26%), Gaps = 15/265 (5%)

Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229
           ++  ++  +        +      +        R     +  A  +  G+     S  + 
Sbjct: 169 LKAQYEELKAAGEAKKTEIAEARKAAQAKAVAERTAIVEKAEALAASLGDNTNWRSTADK 228

Query: 230 IP---VVMAVHHETR---GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
                     H  T       + + + +R+S   +T+++     KW      E     + 
Sbjct: 229 FRNLFDEWQNHQRTTVRIDKPEAEALWKRFSAARTTFNQAR--RKWAQARDNERTAAKEA 286

Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS----IYKKGHFLYTADT--KAWYKKD 337
           +    +           G  + +F+D  ++   +      +              ++   
Sbjct: 287 KEAIIAEANELKDSTAWGETSRKFNDLMDRWKKAGRAGRNEDDELWAKFREAADTFFNAR 346

Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
           + +    + + +K   +    L+   E +  +  + E      +  +     D       
Sbjct: 347 QADRDQINSS-EKENLAAKEALLVKAEALVPVKTDAEAKKARQELAKIQEEWDQIGYVPR 405

Query: 398 ENSKAKSTAQSLEAGSIFSITSDLL 422
           ++ +            I +I     
Sbjct: 406 DDMRRIENRLDAVDKQIKAIEDAAW 430


>gi|308463408|ref|XP_003093978.1| hypothetical protein CRE_16355 [Caenorhabditis remanei]
 gi|308248719|gb|EFO92671.1| hypothetical protein CRE_16355 [Caenorhabditis remanei]
          Length = 774

 Score = 37.6 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 82/309 (26%), Gaps = 24/309 (7%)

Query: 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201
           PK KK+   +      ++   P   E   E L    Q+   P     +S     +     
Sbjct: 46  PKRKKDLETSQKSSSHRIVAKPTNPEFTEEKLRNILQKFAPPSQPSTESKEELTSEKKKA 105

Query: 202 NRQYTNREITAFLSCFGEEFYN--GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259
            ++    +    L              DE   ++     E   S       R+ +K+ + 
Sbjct: 106 TKRKRKVDKPELLQEHSSPVIENIEKWDERTTLMEIFKQEPNPS-------RQMTKEIAK 158

Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTS----LFYHHGKLIPKGLLASRFSDAYNKAM 315
             ++        F  +   +    + +  +    L       + + L   R  +      
Sbjct: 159 VLKKRQGRVSRFFSNQRNKEKNSGKYSHVTPEIRLKLEEEFKVNQNLTTERKKEVAAANN 218

Query: 316 FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD--------KITASIMNFLVSMKEDVF 367
             +     + ++   K   +KD  N                   +   + F  S ++  F
Sbjct: 219 LQLKTVTTWFFSRRMK---EKDPENWKKMKAKYRADSKRRLRLESNKPLQFKYSEEQKNF 275

Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
              +  E +    +  R W       +      +       L       I   +L  +  
Sbjct: 276 MNGKVSEGHEITKEQSREWAKEINLNEYQAARRRRPRARTPLTEEEAIPIIGKVLKENPN 335

Query: 428 FLGEQDGIL 436
           +    +G+L
Sbjct: 336 YRECGNGVL 344


>gi|145694446|gb|ABP93842.1| NS1 [Goose parvovirus]
          Length = 627

 Score = 37.6 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G        + +  ++  ++ +Y  + VG  L G
Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDIIKNRVYQILKMNNYNPQYVGSILCG 320

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAIPFYGCVN-------------WTNENFP 367

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++  +  K + GG  +        +              + 
Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIETTPVIITSNTDM 426

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475


>gi|315226623|ref|ZP_07868411.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
 gi|315120755|gb|EFT83887.1| conserved hypothetical protein [Parascardovia denticolens DSM
           10105]
          Length = 488

 Score = 37.6 bits (85), Expect = 8.1,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 61/281 (21%), Gaps = 43/281 (15%)

Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
           ED             K   E        KK  + +              +I         
Sbjct: 156 EDIKKADVVGDIAALKSRLEELKTEGASKKEELAAARKEAMAKAAAEREKIVVEAEQLAA 215

Query: 220 EFYNGSHDEWIPVV---MAV---------HHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
               G    W        A+         H      S+   + +R+S   S+++      
Sbjct: 216 SL--GDSTNWRQTGDKFQALFNKWQEHQKHSIHLEKSQADALWKRFSAARSSFNSAR--R 271

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327
            W      +  +  K +    +              + RF++                  
Sbjct: 272 AWIQQRDSQRSEARKAKEKIIAAAESIQDSTDWAATSRRFNELM---------------- 315

Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387
                W    +   +     L K   +  +   + ++   D   E E  N          
Sbjct: 316 ---DEWKAAGRVGRHEEDDALWKRFRAAADVFFNARQADRDKLNEGETEN--------LK 364

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
             +   +  +     K   ++ +     +   D  D     
Sbjct: 365 KKEALLEKAKALLPVKDVKEAKQTRQSLAKIQDEWDQIGYV 405


>gi|168211842|ref|ZP_02637467.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Clostridium
           perfringens B str. ATCC 3626]
 gi|170710208|gb|EDT22390.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Clostridium
           perfringens B str. ATCC 3626]
          Length = 310

 Score = 37.6 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 97/285 (34%), Gaps = 45/285 (15%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
           + I G    GKS L   +                +   +  + G A  S   + G    +
Sbjct: 6   LIIAGPTAVGKSDLSVDLAKKL---NGEIISVDSMQIYKYMDIGSAKISKEEMGGIPHYL 62

Query: 564 ISETNENDEINAAKIKQMTGGD--CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
           I   +   E + A+ K++       + +R               P +     L++ +   
Sbjct: 63  IDFVDPGKEFSVAEFKELATEKIKDIQSRGK------------LPILAGGTGLYINS--- 107

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
                 I+   +   +++D ++ ++LE    ++  E     LK +       +  +  + 
Sbjct: 108 ------IICNMNFAESDKDEAYREELEKIANEHGNEYLHEMLKDIDLESYNSIHFNNRKR 161

Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS-YSEYREQELNYDRKRISTRT 737
            ++A E  +     + ++            +  +S+ ++ Y+ Y    LN DR ++  R 
Sbjct: 162 VIRALETYKLTGKPFSSF------------KAKNSIYETPYNIYY-YVLNMDRAKLYDRI 208

Query: 738 VTL--NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
                 + +KG +  +K  K        + +KG+  K     +D 
Sbjct: 209 NKRVDIMFEKGLLEEVKNLKAMGLTDDMQSMKGIGYKEVLYYLDG 253


>gi|109392405|ref|YP_654949.1| gp52 [Mycobacterium phage Cooper]
 gi|88910239|gb|ABD58169.1| gp52 [Mycobacterium phage Cooper]
          Length = 926

 Score = 37.6 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 17/205 (8%), Positives = 43/205 (20%), Gaps = 31/205 (15%)

Query: 36  WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF-EILHGTPIV 94
           W ++   + +I             VG   +   D D+  +           + +   P +
Sbjct: 123 WSKKAEDAGQIAMARPAAVNLAVEVGGSGVVVIDCDTAAQVDRWFEVAEIPDDMRPAPTI 182

Query: 95  RIGQ----------------KPKILIPFRMNKEGIKKKKT-----TESTQGHLDILGCGQ 133
                                      F +  + +          T        +L   +
Sbjct: 183 LTPGQFGADADPNDPSTWAHADGGHFWFTVPDKYLPVLPRHLGAMTWGGDHGFAVLWDRR 242

Query: 134 YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIP 193
           Y +                     ++     L +   E + +  +               
Sbjct: 243 YVLIPPSTRPEGAY---------EQLGHVYDLPDWLGEAIMQAGERRVQRAEASAGDTAE 293

Query: 194 SKTWTNNNNRQYTNREITAFLSCFG 218
           +     + +R   N    + L   G
Sbjct: 294 NPELATHIDRWAENVSWASILEPLG 318


>gi|18310139|ref|NP_562073.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Clostridium
           perfringens str. 13]
 gi|21263768|sp|Q8XL85|MIAA_CLOPE RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|18144818|dbj|BAB80863.1| tRNA isopentenylpyrophosphate transferase [Clostridium perfringens
           str. 13]
          Length = 310

 Score = 37.6 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 98/285 (34%), Gaps = 45/285 (15%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
           + I G    GKS L   +                +   +  + G A  S   + G    +
Sbjct: 6   LIIAGPTAVGKSDLSVDLAKKL---NGEIISVDSMQIYKYMDIGSAKISKEEMGGIPHYL 62

Query: 564 ISETNENDEINAAKIKQMTGGD--CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
           I   + + E + A+ K +T      + +R               P +V    L++ +   
Sbjct: 63  IDFVDPSKEFSVAEFKDLTTEKIKDIQSRGK------------LPILVGGTGLYINS--- 107

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
                 I+   +   +++D  + ++LE    ++  E     LK +       +  +  + 
Sbjct: 108 ------IICNMNFAESDKDEEYREELEKIANEHGNEYLHEMLKDIDLESYNSIHFNNRKR 161

Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS-YSEYREQELNYDRKRISTRT 737
            ++A E  +     + ++            +  +S+ ++ Y+ Y    LN DR ++  R 
Sbjct: 162 VIRALETYKLTGKPFSSF------------KAKNSIYETPYNIYY-YVLNMDRAKLYDRI 208

Query: 738 VTL--NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
                 + +KG +  +K  K        + +KG+  K     +D 
Sbjct: 209 NKRVDIMFEKGLLEEVKNLKAMGLTDDMQSMKGIGYKEVLYYLDG 253


>gi|110803443|ref|YP_698495.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Clostridium
           perfringens SM101]
 gi|123146165|sp|Q0STR2|MIAA_CLOPS RecName: Full=tRNA dimethylallyltransferase; AltName:
           Full=Dimethylallyl diphosphate:tRNA
           dimethylallyltransferase; Short=DMAPP:tRNA
           dimethylallyltransferase; Short=DMATase; AltName:
           Full=Isopentenyl-diphosphate:tRNA
           isopentenyltransferase; Short=IPP transferase;
           Short=IPPT; Short=IPTase
 gi|110683944|gb|ABG87314.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Clostridium
           perfringens SM101]
          Length = 310

 Score = 37.6 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 98/285 (34%), Gaps = 45/285 (15%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
           + I G    GKS L   +                +   +  + G A  S   + G    +
Sbjct: 6   LIIAGPTAVGKSDLSVDLAKKL---NGEIISVDSMQIYKYMDIGSAKISKEEMGGIPHYL 62

Query: 564 ISETNENDEINAAKIKQMTGGD--CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
           I   + + E + A+ K++       + +R               P +V    L++ +   
Sbjct: 63  IDFVDPSKEFSVAEFKELATEKIKDIQSRGK------------LPILVGGTGLYINS--- 107

Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
                 I+   +   +++D  + ++LE    ++  E     LK +       +  +  + 
Sbjct: 108 ------IICNMNFAESDKDEEYREELEKIANEHGNEYLHEMLKDIDLESYNSIHFNNRKR 161

Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS-YSEYREQELNYDRKRISTRT 737
            ++A E  +     + ++            +  +S+ ++ Y+ Y    LN DR ++  R 
Sbjct: 162 VIRALETYKLTGKPFSSF------------KAKNSIYETPYNIYY-YVLNMDRAKLYERI 208

Query: 738 VTL--NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
                 + +KG +  +K  K        + +KG+  K     +D 
Sbjct: 209 NKRVDIMFEKGLLEEVKNLKAMGLTDDMQSMKGIGYKEVLYYLDG 253


>gi|88604147|ref|YP_504325.1| hypothetical protein Mhun_2914 [Methanospirillum hungatei JF-1]
 gi|88189609|gb|ABD42606.1| hypothetical protein Mhun_2914 [Methanospirillum hungatei JF-1]
          Length = 429

 Score = 37.6 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 84/304 (27%), Gaps = 16/304 (5%)

Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
            G G+Y   ++++P   K +  T      ++     +     E L    +   +   +D 
Sbjct: 125 RGPGRY--LHHLYPDEVKVFKQTLDHMGHELNRMTEIIRISRERLMHIAEMRALLHNRDA 182

Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF----YNGSHDEWIPVVMAVHHETRGSS 244
                ++        +    E+   L   G E      + S+  ++ +            
Sbjct: 183 LIEEEAQAGAEEKKFEARLSELKTDLQKAGSELERLLASDSYASYLRLEEETGQIREQLE 242

Query: 245 KGKEIARRWSKQG---STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK--LIP 299
           K +E      +          + F  +    D + + D  +  S+         +   + 
Sbjct: 243 KARETWESQIRVALPVWKRGVKAFQEQAKPVDEKNMEDLIQAASSPRRDDDEIARLISLT 302

Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
              L + F     +A  S  K         TK + +   +   +      K      N L
Sbjct: 303 AKPLFTLFESGIVQAKNSFEKHLFTNAEEYTKKFGEISISLHTLSEDLKRKKQDLEGNVL 362

Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
           +  K  +     E        +        + R++ +    + + +            T 
Sbjct: 363 LEQKNHITQTITEA-----EKRIDELNQEEEKRKERLSSLKEKQRSILEELRKKFSEFTE 417

Query: 420 DLLD 423
           + +D
Sbjct: 418 EEMD 421


>gi|190888189|gb|ACE95848.1| Rep [Goose parvovirus]
          Length = 627

 Score = 37.6 bits (85), Expect = 9.4,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 70/232 (30%), Gaps = 27/232 (11%)

Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
           + +    ++  +   +   T T ++ G          +  ++  ++ +Y  + +G  L G
Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320

Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
             K +      I + G   +GK+ +   I +A      +N                 N  
Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
               +   ++   E    +++     K + GG  +        +    P         + 
Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVE-FAKAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426

Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659
            + V         R   IP     F   ++++      K+  K   E  KW 
Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475


>gi|294786982|ref|ZP_06752236.1| conserved hypothetical protein [Parascardovia denticolens F0305]
 gi|294485815|gb|EFG33449.1| conserved hypothetical protein [Parascardovia denticolens F0305]
          Length = 475

 Score = 37.6 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 61/281 (21%), Gaps = 43/281 (15%)

Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
           ED             K   E        KK  + +              +I         
Sbjct: 143 EDIKKADVVGDIAALKSRLEELKTEGASKKEELAAARKEAMAKAAAEREKIVVEAEQLAA 202

Query: 220 EFYNGSHDEWIPVV---MAV---------HHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
               G    W        A+         H      S+   + +R+S   S+++      
Sbjct: 203 SL--GDSTNWRQTGDKFQALFNKWQEHQKHSIHLEKSQADALWKRFSAARSSFNSAR--R 258

Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327
            W      +  +  K +    +              + RF++                  
Sbjct: 259 AWIQQRDSQRSEARKAKEKIIAAAESIQDSTDWAATSRRFNELM---------------- 302

Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387
                W    +   +     L K   +  +   + ++   D   E E  N          
Sbjct: 303 ---DEWKAAGRVGRHEEDDALWKRFRAAADVFFNARQADRDKLNEGETEN--------LK 351

Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
             +   +  +     K   ++ +     +   D  D     
Sbjct: 352 KKEALLEKAKALLPVKDVKEAKQTRQSLAKIQDEWDQIGYV 392


>gi|118349610|ref|XP_001008086.1| hypothetical protein TTHERM_00006050 [Tetrahymena thermophila]
 gi|89289853|gb|EAR87841.1| hypothetical protein TTHERM_00006050 [Tetrahymena thermophila SB210]
          Length = 8668

 Score = 37.6 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/99 (10%), Positives = 33/99 (33%), Gaps = 1/99 (1%)

Query: 497  GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI-R 555
              ++       G  G GK+ L+  + Y   + +      + + +    +  ++       
Sbjct: 1822 RIRSNIPTIFMGETGIGKTALLEYLAYLMNDMFYSKTIHAGVTEKEIIDLVESLEKKAME 1881

Query: 556  LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
            L   ++++  +      + +   K+M     +  R  + 
Sbjct: 1882 LDNKKLILFFDEANTCSLISGLFKEMIVDRLIKGRQLFK 1920


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.307    0.116    0.288 

Lambda     K      H
   0.267   0.0358    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,297,393,278
Number of Sequences: 14124377
Number of extensions: 127402334
Number of successful extensions: 515053
Number of sequences better than 10.0: 2709
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 1609
Number of HSP's that attempted gapping in prelim test: 507899
Number of HSP's gapped (non-prelim): 3257
length of query: 789
length of database: 4,842,793,630
effective HSP length: 147
effective length of query: 642
effective length of database: 2,766,510,211
effective search space: 1776099555462
effective search space used: 1776099555462
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 85 (37.5 bits)