RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid
primase [Candidatus Liberibacter asiaticus str. psy62]
(789 letters)
>1ro2_A Hypothetical protein ORF904; DNA polymerase, primase, replication,
polymerization, evolution of nucleic acid polymerizing
enzymes; 1.60A {Sulfolobus islandicus} SCOP: d.264.1.2
PDB: 1ro0_A 1rni_A
Length = 216
Score = 62.4 bits (151), Expect = 4e-10
Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 24/191 (12%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCGV 60
AK + +GF +IP+ K+P + K+ ++ S E+ + +
Sbjct: 6 RYAKWMLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPG-- 63
Query: 61 GEQPLYAFDIDSKDEKTA-NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK-- 117
G++ + D +SK++ A E+ T I I N K
Sbjct: 64 GQKGMVIMDFESKEKLKAWIGESALEELCRKTLCTNTVHGG-IHIYVLSNDIPPHKINPL 122
Query: 118 TTESTQGHLDILGCGQYFVA------YNIHPKTKKEYTW---TTPPHRFKVEDTPLLSEE 168
E+ +G +D+ Y + + K + TT + +S+
Sbjct: 123 FEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCY--TLYNELKEISKV 180
Query: 169 DVEYLFKFFQE 179
D++ L +F E
Sbjct: 181 DLKSLLRFLAE 191
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 58.8 bits (142), Expect = 5e-09
Identities = 18/161 (11%), Positives = 36/161 (22%), Gaps = 26/161 (16%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
Y + I + G +GK+ + I + +N
Sbjct: 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNE-------- 139
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
N + ++ E K + GG + ++ P
Sbjct: 140 -----NFPFNDCVDKMVIWWEEGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDP--- 190
Query: 605 TPFIV---------PNKHLFVRNPDDAWWRRYIVIPFDKPI 636
TP IV + + R + +
Sbjct: 191 TPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRL 231
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 49.9 bits (119), Expect = 2e-06
Identities = 53/333 (15%), Positives = 88/333 (26%), Gaps = 162/333 (48%)
Query: 408 SLEAGSI-FSITSDLLDSSSRFLGEQ-------------DGI-LDLETGQKVKPTKELYI 452
+L GS+ + L+ ++S F+ Q +G D E EL
Sbjct: 10 TLSHGSLEHVL---LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA----ELV- 61
Query: 453 TKSTGTPFV-----EGEPSQ--EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505
K G +V + Q + L+L FE+ + L GN IH
Sbjct: 62 GKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENC-----Y--------LEGND----IH 102
Query: 506 --IRGVGGSGKSTLM---NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS-LIRLMGS 559
+ +TL+ LIK A + + K + S L R +G
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYI--------TARIMAKRPFD---KKSNSALFRAVGE 151
Query: 560 RIVIISETNENDEINAAKIKQMTGG-----DCMTA-RLNYGNTYSESPASFTPFIVP--- 610
A++ + GG D R Y TY +
Sbjct: 152 --------------GNAQLVAIFGGQGNTDDYFEELRDLY-QTY-------HVLVGDLIK 189
Query: 611 --NKHL--FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
+ L +R DA +K F
Sbjct: 190 FSAETLSELIRTTLDA---------------------------------EKVF------- 209
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
++GL++ W+++
Sbjct: 210 -TQGLNI--------------------LEWLEN 221
Score = 40.3 bits (94), Expect = 0.002
Identities = 29/161 (18%), Positives = 48/161 (29%), Gaps = 53/161 (32%)
Query: 587 MTA---R---LNYGN-TYSESPASFTPFIVPNKHLFVRNP--DDAWWRRYIVIPFDKPIA 637
M A R L++G+ + +VP F+ + + F+K +
Sbjct: 1 MDAYSTRPLTLSHGSLEHV--------LLVPTASFFIASQLQEQ----------FNKILP 42
Query: 638 NRDASFAQKLETKYTLE--AKKWFLKGVKAYI---SKGLDVDIPEVCLKAKEEERQGTDT 692
FA E E K FL V + + G + +CL E +
Sbjct: 43 EPTEGFAADDEPTTPAELVGK--FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN- 99
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
DI H+LA + + L K +
Sbjct: 100 ---------DI--------HALAAKLLQENDTTLV-KTKEL 122
Score = 36.5 bits (84), Expect = 0.022
Identities = 70/336 (20%), Positives = 119/336 (35%), Gaps = 93/336 (27%)
Query: 59 GVGEQPLYAFDIDSKD--EKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIK 114
G+G LY ++D + N FKDT F IL IV I + I F G K
Sbjct: 1630 GMG-MDLYKTSKAAQDVWNRADNHFKDTYGFSILD---IV-INNPVNLTIHF----GGEK 1680
Query: 115 KKKTTESTQGHL------DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
K+ E+ + L + F N H + YT F+ E L + +
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS---YT-------FRSEKGLLSATQ 1730
Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSK-TWTNNNNRQYTN----REITAFLSCFGEEFYN 223
+ ++ +K K +IP+ T+ ++ +Y ++ + S FY
Sbjct: 1731 FTQPALTLMEKAAFEDLK-SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
G + + +AV + G S IA + +++ +E Y E +G K
Sbjct: 1790 G-----MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV-----VERVG----K 1835
Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
R+ G L + YN + ++ D +A
Sbjct: 1836 RT---------------GWLVEIVN--YN------VENQQYVAAGDLRA----------- 1861
Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLS-----EEPE 374
LD +T +++NF+ K D+ +L EE E
Sbjct: 1862 ----LDTVT-NVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 32.2 bits (73), Expect = 0.42
Identities = 24/113 (21%), Positives = 30/113 (26%), Gaps = 28/113 (24%)
Query: 642 SFAQKL--ETKYTLEAKKWFLKG-VKAYISKGLDVDIPEVC--LKAKEEER--------- 687
+ A KL E TL K +K + A I D +A E
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 688 QGT------------DTYQAWIDDCCD-IGENLWEESHSLAKSYSEYREQELN 727
QG TY + D E L E + Q LN
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI-RTTLDAEKVFTQGLN 214
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding, early
protein; 3.00A {Bovine papillomavirus type 1} PDB:
2gxa_A*
Length = 305
Score = 47.9 bits (114), Expect = 8e-06
Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 25/169 (14%)
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L G + + G +GKS L +LI + G+ V++ K++
Sbjct: 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS--VLSFANH-----------KSHF 164
Query: 552 SLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
L L +R ++ + ++ G ++ + P +V
Sbjct: 165 WLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIK---APPLLVT 221
Query: 611 -NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
N + + R F++P + E + + W
Sbjct: 222 SNIDVQAEDRYLYLHSRVQTFRFEQPCTDESG------EQPFNITDADW 264
>3m1m_A ORF904; primase, polymerase, plasmid, replication; 1.85A
{Sulfolobus islandicus}
Length = 335
Score = 40.2 bits (93), Expect = 0.002
Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 42/219 (19%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCGV 60
AK + +GF +IP+ K+P + K+ ++ S E+ + +
Sbjct: 10 RYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPG-- 67
Query: 61 GEQPLYAFDIDSKDE-KTANTFKDTFEILHGTPIV-----------RIGQKPKILIPFRM 108
G++ L D +SK++ K E+ T P I
Sbjct: 68 GQKGLVILDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 127
Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVA-----YNIHPKTKK------EYTWTTPPHRF 157
+ G +G +D+ Y + ++H T K YT +
Sbjct: 128 EENG----------KGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLYNE 177
Query: 158 KVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKT 196
E + + + + +L + + + + L K K + K
Sbjct: 178 LKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGKK 216
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 39.0 bits (91), Expect = 0.004
Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 24/168 (14%)
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
L G + + G +GKS M+ I + G S +
Sbjct: 51 FLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-------------HFW 97
Query: 553 LIRLMGSRIVIISE-TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV-P 610
L L +++ ++ + T ++ G+ ++ + P ++
Sbjct: 98 LEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLK---CPPILLTT 154
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
N H N R V F F + Y + K W
Sbjct: 155 NIHPAKDNRWPYLESRITVFEFPNAF-----PFDKNGNPVYEINDKNW 197
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleotide
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 35.0 bits (79), Expect = 0.064
Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 3/129 (2%)
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
R I + G +GKS ++ ++ ++ +++ P + A +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWL-AFGVDSLIEAMPLKMQSAEGGIEFDADG 60
Query: 560 RIVIISETNENDEINAAKIKQM--TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+ I E + A + M G + + G ++ + + VR
Sbjct: 61 GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVR 120
Query: 618 NPDDAWWRR 626
R
Sbjct: 121 CDGAVAEGR 129
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 33.9 bits (76), Expect = 0.15
Identities = 23/166 (13%), Positives = 43/166 (25%), Gaps = 1/166 (0%)
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
L+ I I GV SGK+TL ++ N VI+ + ++
Sbjct: 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQ 72
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
L + + +A T + + N+
Sbjct: 73 YDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEEIPILIIEGFLLFNYKPLDTIWNR 132
Query: 613 HLFVR-NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
F+ ++ RR + + KY E +
Sbjct: 133 SYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQD 178
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 33.4 bits (74), Expect = 0.21
Identities = 18/180 (10%), Positives = 41/180 (22%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + G+ GKS+L+ + E + E
Sbjct: 29 ENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPF 88
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
+ + + N + + ++++ + + G E +F +
Sbjct: 89 QKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGG 148
Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
+ Y S L + + L G A D
Sbjct: 149 KELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTS 208
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 32.7 bits (73), Expect = 0.35
Identities = 11/54 (20%), Positives = 19/54 (35%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
R + I G GKST + L+ + +V + + KA +
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSL 56
>3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome,
procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo
sapiens}
Length = 1263
Score = 32.5 bits (73), Expect = 0.39
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
L ++ I G+ G GKS L
Sbjct: 145 KLSKLKGEPGWVTIHGMAGCGKSVLAAEA 173
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center
for structural genomics, JCSG, protein structure
initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus
j-10-fl}
Length = 193
Score = 32.0 bits (71), Expect = 0.52
Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 6/125 (4%)
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
G + I + G +GK+TL + + + G ++ R
Sbjct: 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLL---SKDAFKEVMFDGLGWSDREWSRR 57
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGG---DCMTARLNYGNTYSESPASFTPFIVPNKH 613
+G+ +++ + + + M D T R+ +T + +
Sbjct: 58 VGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117
Query: 614 LFVRN 618
L R
Sbjct: 118 LVERI 122
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography, ATP-binding; 2.15A {Ehrlichia
chaffeensis}
Length = 223
Score = 31.7 bits (71), Expect = 0.61
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
FI G+ GSGK+T +L+ Y + ++++ R P N S+ L
Sbjct: 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGV----NNVVLTREPGGTLLNESVRNL 72
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 31.4 bits (70), Expect = 0.70
Identities = 29/188 (15%), Positives = 54/188 (28%), Gaps = 2/188 (1%)
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G R I + G G+GKS L + N + +SD++ E+ K +L +
Sbjct: 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQ 99
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
L I +E D + ++ + + +V
Sbjct: 100 LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ-GVGVDNDGILVLGATNI 158
Query: 616 VRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
D A RR+ P + A+ + + + + D
Sbjct: 159 PWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGAD 218
Query: 675 IPEVCLKA 682
I + A
Sbjct: 219 ISIIVRDA 226
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, structural genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 31.6 bits (70), Expect = 0.74
Identities = 27/176 (15%), Positives = 47/176 (26%), Gaps = 3/176 (1%)
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
L ++ + + G GSGKSTL N + A Q + + + L
Sbjct: 15 LDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLL 74
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
R + + + + P I N
Sbjct: 75 PRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYL 134
Query: 614 LFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQK-LETKYTLE-AKKWFLKGVKAY 666
LF + V + P+A+ +A Q+ L+ + A A
Sbjct: 135 LFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLAN 190
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.4 bits (70), Expect = 0.78
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE-QELNYDRKRIS 734
PE K +EE+R+ +D + E W E K E+ + Q ++ +I+
Sbjct: 84 PESIRKWREEQRKRLQE----LDAASKVMEQEWREKAK--KDLEEWNQRQSEQVEKNKIN 137
Query: 735 TRTVTLNLKQKGF 747
R + K F
Sbjct: 138 NR-----IADKAF 145
Score = 28.0 bits (61), Expect = 7.6
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 21/60 (35%)
Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
+ L +E S+ K +RE++ RKR+ L+ K +E+EW+ K
Sbjct: 77 ADRLTQEPESIRK----WREEQ----RKRLQE----LDAASK---------VMEQEWREK 115
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 30.9 bits (69), Expect = 1.0
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGN-QYV 530
+ GV GSGKS+L YA +Y+
Sbjct: 37 ALVVFTGVSGSGKSSLAFGTLYAEAQRRYL 66
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 31.0 bits (70), Expect = 1.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
+ + G GSGKST+ L+
Sbjct: 43 YPGKVTALVGPNGSGKSTVAALL 65
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 30.9 bits (70), Expect = 1.2
Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 509 VG--GSGKSTLMNLI 521
+G GSGKSTL++
Sbjct: 53 LGRTGSGKSTLLSAF 67
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein structure initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 30.8 bits (68), Expect = 1.3
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
+ + + + G GSGKST+ + G V
Sbjct: 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKV 38
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 30.6 bits (69), Expect = 1.3
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 503 FIHIRGVGGSGKSTLMNLI---KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
I I G GSGKST + I + ++N + ++++++ + A+ + +RL+ +
Sbjct: 34 VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 93
Query: 560 RIVII 564
R+ ++
Sbjct: 94 RLTMV 98
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 2zi3_A* ...
Length = 263
Score = 30.7 bits (68), Expect = 1.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ I I G +GKST +N++K + V+
Sbjct: 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 30.5 bits (67), Expect = 1.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
R I G GSGKS +++ IK+ FG Q
Sbjct: 25 RVTAIVGPNGSGKSNIIDAIKWVFGEQ 51
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 30.4 bits (67), Expect = 1.5
Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 1/123 (0%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
I + G SGKS++ I G Q ++ ++ + S + +
Sbjct: 25 IGVSGGTASGKSSVCAKIVQLLG-QNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 83
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+ + + + T ++ + S S T + P + +
Sbjct: 84 NFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFY 143
Query: 624 WRR 626
+
Sbjct: 144 SQE 146
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 30.7 bits (68), Expect = 1.5
Identities = 20/172 (11%), Positives = 46/172 (26%), Gaps = 16/172 (9%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+ I I G+ +GK+T N++ + PE LI +
Sbjct: 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLKF---------PERSTRIGGLINEYLTDD 56
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK-----HLFV 616
+ +A ++ S + +
Sbjct: 57 SFQLSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWC 116
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
PD + + + + +A + + +Y E K+ K + ++
Sbjct: 117 LQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERY--ETVKFQEKVKQTFMK 166
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 30.4 bits (68), Expect = 1.5
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI-------RLMGSR 560
G G GKSTLM I + + E + + ++ S++
Sbjct: 468 GPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEA 527
Query: 561 IV-IISETNENDEINAAKIKQMTGGDCMTARL 591
I + E DE+ A I ++GG M L
Sbjct: 528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLAL 559
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 30.4 bits (68), Expect = 1.5
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
++I G G GK+T L+ ++
Sbjct: 50 LRVYIDGPHGMGKTTTTQLLVALGSRDDIV 79
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 30.4 bits (68), Expect = 1.6
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ G+ G+GK+TL+N++
Sbjct: 49 KWILYGLNGAGKTTLLNIL 67
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 30.2 bits (67), Expect = 1.6
Identities = 20/176 (11%), Positives = 45/176 (25%), Gaps = 11/176 (6%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ---YVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + GV G G +T L + Y + + S + + E ++ +R M
Sbjct: 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMD 63
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR- 617
+ +I + D + P+ + P+ + V
Sbjct: 64 PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVET 123
Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
D+ RR R + + + +
Sbjct: 124 TGDEILMRR-------MSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKI 172
>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt
transport, hydrolase, inner membrane, membrane,
nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
Length = 266
Score = 30.2 bits (68), Expect = 1.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ + G GSGKSTL+ ++
Sbjct: 35 CLLVAGNTGSGKSTLLQIV 53
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 30.4 bits (68), Expect = 1.6
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
++ I G GSGKST Y IN
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 30.3 bits (67), Expect = 1.6
Identities = 5/41 (12%), Positives = 10/41 (24%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
I + G KST+ + + +
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGN 42
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 30.2 bits (67), Expect = 1.9
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
++ I G GSGKST Y IN
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 30.0 bits (68), Expect = 1.9
Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 2/15 (13%)
Query: 509 VG--GSGKSTLMNLI 521
VG G+GKST++ L+
Sbjct: 86 VGPSGAGKSTILRLL 100
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 30.2 bits (68), Expect = 1.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
+ I G G GKST+ +L+
Sbjct: 26 QPNSIIAFAGPSGGGKSTIFSLL 48
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 30.2 bits (68), Expect = 2.0
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
K I I G GSGKSTL LI
Sbjct: 33 KQGEVIGIVGRSGSGKSTLTKLI 55
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
1p75_A*
Length = 334
Score = 30.0 bits (67), Expect = 2.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
I++ GV G GKST ++ A
Sbjct: 9 RIYLDGVYGIGKSTTGRVMASAASGGSPT 37
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 29.9 bits (67), Expect = 2.0
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
+ + G G GKS+L++ +
Sbjct: 29 PEGALVAVVGQVGCGKSSLLSAL 51
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC
transporters, ATPase, walker-A, NBD, transport protein;
HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP:
c.37.1.12 PDB: 1f3o_A*
Length = 235
Score = 30.2 bits (68), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
F+ I G GSGKST++N+I
Sbjct: 33 FVSIMGPSGSGKSTMLNII 51
>2pze_A Cystic fibrosis transmembrane conductance regulator; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 30.2 bits (68), Expect = 2.0
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
+ + + + G G+GK++L+ +I
Sbjct: 32 ERGQLLAVAGSTGAGKTSLLMMI 54
>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop,
D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens}
SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A*
1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A*
1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 30.1 bits (67), Expect = 2.1
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
I + GV +GKST + A
Sbjct: 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGH 38
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 29.8 bits (67), Expect = 2.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ + G GSGK+T++ LI
Sbjct: 43 MVGLLGPSGSGKTTILRLI 61
>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding
cassette, transport protein; HET: ADP; 2.30A
{Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB:
1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A
Length = 381
Score = 29.8 bits (67), Expect = 2.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
F+ G G GKSTL+ +I
Sbjct: 31 FVVFVGPSGCGKSTLLRMI 49
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 30.0 bits (66), Expect = 2.2
Identities = 17/141 (12%), Positives = 34/141 (24%), Gaps = 6/141 (4%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYV----INAEASDIMQNRPPEAGKANPSLIRLMGS 559
I I G G GK+ + + +V +A + + +P I LM
Sbjct: 8 IWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLD 67
Query: 560 RIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
+ E + + M+ + G + +V +
Sbjct: 68 ALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQ 127
Query: 619 PDDAW-WRRYIVIPFDKPIAN 638
P +
Sbjct: 128 PQVNVGTVEDRLNELRGEQFQ 148
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2,
protein structure initiative; 1.80A {Escherichia coli
K12} SCOP: c.37.1.10
Length = 341
Score = 29.9 bits (66), Expect = 2.3
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 504 IHIRGVGGSGKSTLMN-LIKYAFGNQYVINAEASDIM 539
+ + G G+GKST + + A D
Sbjct: 59 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
{Sulfolobus tokodaii str}
Length = 213
Score = 30.0 bits (66), Expect = 2.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
I G+ GSGKS+ L+K + +
Sbjct: 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDV 34
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 29.9 bits (66), Expect = 2.4
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
I + G G G +T+ + A G ++V D +G ++ G
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFV------DTDIFMQHTSGMTVADVVAAEGWPG 56
Query: 562 VIISETNENDEINAAKIKQMTGGDC 586
E+ + TGG
Sbjct: 57 FRRRESEALQAVATPNRVVATGGGM 81
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 29.8 bits (67), Expect = 2.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
+ + G GSGKST+ L+
Sbjct: 44 PSGTTCALVGHTGSGKSTIAKLL 66
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 29.9 bits (66), Expect = 2.4
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
I G+ SGK+T I + +
Sbjct: 5 ALIVFEGLDKSGKTTQCMNIMESIPANTI 33
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.40A {Bacillus halodurans c-125}
SCOP: c.37.1.25
Length = 189
Score = 29.6 bits (65), Expect = 2.5
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
++ I G G GKST + N I +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36
>1sgw_A Putative ABC transporter; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; 1.70A {Pyrococcus furiosus dsm
3638} SCOP: c.37.1.12
Length = 214
Score = 29.5 bits (66), Expect = 2.6
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
++ G G GK+TL+ I
Sbjct: 37 VVNFHGPNGIGKTTLLKTI 55
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A*
Length = 355
Score = 29.8 bits (66), Expect = 2.7
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LL + + I GV G GKST + + +
Sbjct: 71 RLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERG 107
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 29.6 bits (65), Expect = 2.7
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ I G GSGK+T +N + + ++
Sbjct: 17 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL 50
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A
1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Length = 290
Score = 29.5 bits (66), Expect = 2.7
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
+ + + + G G+GK++L+ +I
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMI 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.6 bits (65), Expect = 2.7
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
Q L+ K L+A +K Y D P + +KA E
Sbjct: 20 QALK-K--LQAS------LKLYA----DDSAPALAIKATME 47
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 29.8 bits (67), Expect = 2.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
I G G+GK+T M +I
Sbjct: 33 RFGILGPSGAGKTTFMRII 51
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 29.5 bits (66), Expect = 2.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
I G GSGKSTL+N+I
Sbjct: 35 VTLIIGPNGSGKSTLINVI 53
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 29.6 bits (66), Expect = 2.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ + G G GKSTL++L+
Sbjct: 33 ILAVLGQNGCGKSTLLDLL 51
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 29.4 bits (66), Expect = 2.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ I G G+GK+ + LI
Sbjct: 28 YFVILGPTGAGKTLFLELI 46
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 29.5 bits (65), Expect = 2.9
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLM 518
L ++ I G+ G GKS L
Sbjct: 139 KLSKLKGEPGWVTIHGMAGCGKSVLA 164
>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A
{Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB:
2onj_A*
Length = 578
Score = 29.7 bits (66), Expect = 2.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
+ + G+ G GKSTL+NLI
Sbjct: 365 EKGETVAFVGMSGGGKSTLINLI 387
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 29.5 bits (66), Expect = 2.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
F+ + G GSGKSTL+ I
Sbjct: 31 FMALLGPSGSGKSTLLYTI 49
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 29.5 bits (65), Expect = 3.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528
I I GV G+GK TL+ + AF
Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 29.5 bits (65), Expect = 3.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 504 IHIRGVGGSGKSTLMNLI 521
I I G G GK+TL+ I
Sbjct: 3 IIITGEPGVGKTTLVKKI 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 29.6 bits (66), Expect = 3.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ + G G+GKS + LI
Sbjct: 26 YCVLLGPTGAGKSVFLELI 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 29.6 bits (66), Expect = 3.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
K + + + G G GKST++ L+
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLL 1079
>2fna_A Conserved hypothetical protein; 13814777, structural genomics,
joint center for structural genomics, JCSG; HET: MSE
ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11
c.37.1.20
Length = 357
Score = 29.5 bits (64), Expect = 3.2
Identities = 5/47 (10%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEA 546
+ G+ +GKS+++ + Y+ ++ + +
Sbjct: 30 APITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKD 76
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 29.4 bits (64), Expect = 3.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
I I G G+GKST+ I G +
Sbjct: 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20
Length = 549
Score = 29.5 bits (65), Expect = 3.2
Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 3/111 (2%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
A + + ++ L + + + + I ++ + +
Sbjct: 65 ASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNV 124
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ E +D R + + F+ + G GSGKS + +
Sbjct: 125 PKQMTCYIREYHVD---RVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQA 172
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 29.5 bits (66), Expect = 3.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ I G G GK+TL+ +
Sbjct: 32 ILFIIGASGCGKTTLLRCL 50
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 29.3 bits (65), Expect = 3.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
A + + + G GSGKST+ +LI
Sbjct: 367 PAGKTVALVGRSGSGKSTIASLI 389
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 29.3 bits (64), Expect = 3.3
Identities = 16/137 (11%), Positives = 28/137 (20%), Gaps = 1/137 (0%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ I G+ SGK+TL N + Q + + +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNY-GNTYSESPASFTPFIVPNKHLFVRNPDDA 622
E + K + S I
Sbjct: 85 DVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPFF 144
Query: 623 WWRRYIVIPFDKPIANR 639
+ Y+ P + A
Sbjct: 145 DFVVYLDCPREIRFARE 161
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 29.3 bits (65), Expect = 3.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
+ + + G GSGKST+ NL
Sbjct: 367 PQGKTVALVGRSGSGKSTIANLF 389
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C*
Length = 249
Score = 29.1 bits (65), Expect = 3.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+H+ G G+GKSTL+ +
Sbjct: 28 ILHLVGPNGAGKSTLLARM 46
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious
diseases, center for structural genomics of infectious
diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
biovar eltor} PDB: 3n2i_A*
Length = 236
Score = 29.2 bits (65), Expect = 3.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 502 RFIHIRGVGGSGKSTLMNLIK 522
+FI I G+ G+GKST + ++
Sbjct: 28 KFIVIEGLEGAGKSTAIQVVV 48
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) class, TM0421, structural
genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8}
Length = 359
Score = 29.1 bits (65), Expect = 3.8
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
K F+ + G G GK+T + ++
Sbjct: 27 KDGEFVALLGPSGCGKTTTLLML 49
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 29.2 bits (64), Expect = 3.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
+ + G+ G GKST++ +K NQ +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGI 30
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 28.9 bits (64), Expect = 4.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ I G G+GKST + ++
Sbjct: 49 VVGIVGPNGTGKSTAVKIL 67
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 29.1 bits (65), Expect = 4.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
F+ + G G GK+T + +I
Sbjct: 39 FLVLLGPSGCGKTTTLRMI 57
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 28.9 bits (63), Expect = 4.1
Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 16/196 (8%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
G GSGK+ L+ + ++Y I A D++ E + + + + + +
Sbjct: 41 FDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKEC 100
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+ + A + + D + T + +
Sbjct: 101 HLDAHLVGH--ALEDLNLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIEK 158
Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
+ I D +A +K ++ K ++ D V L K
Sbjct: 159 HPGIMKTADLIVINKIDL-----------ADAVGADIKKMENDA-KRINPDAEVVLLSLK 206
Query: 684 EEERQGTDTYQAWIDD 699
E G D +I+
Sbjct: 207 TME--GFDKVLEFIEK 220
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 28.8 bits (64), Expect = 4.2
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+FI G+ SGKST L+ N
Sbjct: 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.0 bits (63), Expect = 4.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 504 IHIRGVGGSGKSTLMNLI 521
+ I G SGK+TL+ +
Sbjct: 5 LSIVGTSDSGKTTLITRM 22
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi}
Length = 607
Score = 28.8 bits (64), Expect = 4.4
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ I G G+GK+T + ++
Sbjct: 119 VVGIVGPNGTGKTTAVKIL 137
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 29.0 bits (65), Expect = 4.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ I G GSGK+TL+ I
Sbjct: 32 KVIILGPNGSGKTTLLRAI 50
>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
{Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
Length = 205
Score = 28.8 bits (63), Expect = 4.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
FI G GSGK+T++N + + Y
Sbjct: 3 AFITFEGPEGSGKTTVINEVYHRLVKDY 30
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET:
T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB:
5tmp_A*
Length = 213
Score = 28.7 bits (63), Expect = 4.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 502 RFIHIRGVGGSGKSTLMNLIK 522
++I I G+ G+GK+T N++
Sbjct: 4 KYIVIEGLEGAGKTTARNVVV 24
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 28.6 bits (64), Expect = 4.9
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ + G G+GK+T ++ I
Sbjct: 34 IVTLIGANGAGKTTTLSAI 52
>2wsm_A Hydrogenase expression/formation protein (HYPB); hydrogenase
maturation factor, metal binding protein; 2.30A
{Archaeoglobus fulgidus}
Length = 221
Score = 28.8 bits (63), Expect = 4.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
++I G GSGK+ L+ GN+ I A D++
Sbjct: 33 VNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKA 71
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, ATP-binding cassette, cytoplasm;
HET: ADP; 3.20A {Geobacillus stearothermophilus 10}
Length = 972
Score = 28.6 bits (63), Expect = 4.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGN-QYV 530
+ + + G+ GSGKS+L YA G +YV
Sbjct: 45 KLVVLTGLSGSGKSSLAFDTIYAEGQRRYV 74
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 28.6 bits (64), Expect = 5.1
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
I G G GKSTL
Sbjct: 36 VTAILGGNGVGKSTLFQNF 54
>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter,
methionine uptake transporter, membrane protein,
amino-acid transport; 3.70A {Escherichia coli K12} SCOP:
c.37.1.12 d.58.18.13
Length = 343
Score = 28.6 bits (64), Expect = 5.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ G G+GKSTL+ +
Sbjct: 33 IYGVIGASGAGKSTLIRCV 51
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene
therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A*
2vtk_A* 3vtk_A* 3f0t_A* 1e2l_A* ...
Length = 331
Score = 28.4 bits (63), Expect = 6.0
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
++I G G GK+T L+ ++
Sbjct: 5 LRVYIDGPHGMGKTTTTQLLVALGSRDDIV 34
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 28.4 bits (62), Expect = 6.1
Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 3/148 (2%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
I + G G+GK T + + ++ A D+++ AG LI+ I
Sbjct: 18 IFVLGGPGAGKGTQCEKLVKDYSFVHL---SAGDLLRAEQGRAGSQYGELIKNCIKEGQI 74
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+ + + A + + ++ + + LF P+D
Sbjct: 75 VPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIM 134
Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKY 651
R + ++ + +K +
Sbjct: 135 LERLLERGKTSGRSDDNIESIKKRFNTF 162
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 28.2 bits (63), Expect = 6.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ + G GSGKST + +
Sbjct: 52 VVVVIGPSGSGKSTFLRCL 70
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics,
joint center for structural genomics, JCSG; 2.10A
{Thermotoga maritima MSB8} SCOP: c.37.1.12
Length = 256
Score = 28.4 bits (63), Expect = 6.7
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 503 FIHIRGVGGSGKSTLMNLI 521
+ G G+GK+T + +I
Sbjct: 43 IFGLIGPNGAGKTTTLRII 61
>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein,
structural genomics, OCSP, NESG; NMR
{Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
Length = 104
Score = 28.1 bits (63), Expect = 6.8
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 543 PPEAGKANPSLIRLM----GSRIVIIS 565
PP+ GKAN +I+ G + I+S
Sbjct: 46 PPQKGKANREIIKEFSETFGRDVEIVS 72
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 28.5 bits (63), Expect = 6.9
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528
I++ G G GK+T + F
Sbjct: 14 RIYLDGAYGIGKTTAAEEFLHHFAIT 39
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A*
2zub_A* 2zuc_A* 2zud_A*
Length = 324
Score = 28.3 bits (62), Expect = 7.2
Identities = 38/234 (16%), Positives = 65/234 (27%), Gaps = 25/234 (10%)
Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
+ L S+ L +S + L GI L T QK+ + T
Sbjct: 23 TVINKLIEAGYSSL-ETLAVASPQDLSVAAGI-PLSTAQKIIKEARDALDIRFKTALEVK 80
Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI-- 521
+ + +G + + L GG + + G GSGK+ L + +
Sbjct: 81 KERMNVKKISTGSQALDGL-----------LAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129
Query: 522 -------KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
K + V R KA I + + I I N + +I
Sbjct: 130 NVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIA 189
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
Q + +L + F ++L VR +
Sbjct: 190 IVDDLQELVSKDPSIKL---IVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQL 240
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
SCOP: c.98.2.1 c.91.1.2
Length = 314
Score = 27.8 bits (62), Expect = 9.9
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 23/131 (17%)
Query: 445 KPTKELY-ITKSTGTP-FVEGEPSQEFLDLVSGYFESE----EVMDYFTRCVGMALLGGN 498
+P +EL K TP + + + ++ + E E + V + + G
Sbjct: 91 EPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHG----VLVDVYG-- 144
Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAFG----NQYVINAEASDIMQNRPPEAGKANPSL 553
+ I G G GKS LIK + I + D + R P+ + L
Sbjct: 145 ---VGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAPKLIE---HL 198
Query: 554 IRLMGSRIVII 564
+ + G I+ +
Sbjct: 199 LEIRGLGIINV 209
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.316 0.134 0.401
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 7,033,012
Number of extensions: 339922
Number of successful extensions: 1350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1342
Number of HSP's successfully gapped: 131
Length of query: 789
Length of database: 5,693,230
Length adjustment: 100
Effective length of query: 689
Effective length of database: 3,268,830
Effective search space: 2252223870
Effective search space used: 2252223870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.0 bits)