BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] (789 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Length = 789 Score = 1640 bits (4246), Expect = 0.0, Method: Compositional matrix adjust. Identities = 789/789 (100%), Positives = 789/789 (100%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV Sbjct: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE Sbjct: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI Sbjct: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET Sbjct: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK Sbjct: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV Sbjct: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD Sbjct: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE Sbjct: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ Sbjct: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES Sbjct: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL Sbjct: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD Sbjct: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 Query: 781 NSNIIDFKR 789 NSNIIDFKR Sbjct: 781 NSNIIDFKR 789 >gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62] Length = 233 Score = 292 bits (748), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 132/233 (56%), Positives = 169/233 (72%) Query: 41 LSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP 100 + + +D GFG +CG+G P+YAFD+D DE+ + F + F+ G PI R+GQ P Sbjct: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60 Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 K L+ FRM + +KK+K+ E QGHL+ L GQ FVAYNIHPKT++ YTW+ PH KVE Sbjct: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120 Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220 + PLL+ ++VEY F+FF IT P K+K SK W ++NNR+YTN EI AFLSCFGEE Sbjct: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180 Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273 FYNGSHDEWIPVVMA+H+ETRGS++GKEI R W K G TYDE++FN KWD+FD Sbjct: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 27.3 bits (59), Expect = 0.94, Method: Composition-based stats. Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 1/24 (4%) Query: 498 NKAQRFIHIRGVGGSGKSTLMNLI 521 NKA+R + I G G+GKSTL++L+ Sbjct: 23 NKAERIV-ILGPSGAGKSTLLSLM 45 >gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 896 Score = 27.3 bits (59), Expect = 1.1, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 18/36 (50%) Query: 137 AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172 Y IH +K+E R+KV+ PL+ VEY Sbjct: 743 GYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEY 778 >gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 26.2 bits (56), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 20/41 (48%) Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201 DTPLL E+ EYLF +T ++ ++ K T N Sbjct: 109 DTPLLFEKRKEYLFDAVVVVTCSFETQRERVLSRKKHTEEN 149 >gi|254780455|ref|YP_003064868.1| nicotinate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 418 Score = 26.2 bits (56), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/81 (22%), Positives = 30/81 (37%) Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD 261 NR Y + + FG +F+ W+ H++ +G E W K+ + Sbjct: 261 NRLYDDNLLIVLPDSFGTDFFLEHAPSWMTQWKGFRHDSASPIEGGEKIIAWWKKMNCNP 320 Query: 262 EENFNYKWDTFDFEEIGDTAK 282 + F D D + I T K Sbjct: 321 QNKFLVFSDNLDVDSIIYTYK 341 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 26.2 bits (56), Expect = 2.4, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 504 IHIRGVGGSGKSTLMN-LIKYAFGNQYVINAEASDIMQNRPPEA 546 + I G GSGK+TL+N L +Y ++ ++ E + +Q + P Sbjct: 253 VLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHV 296 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 24.3 bits (51), Expect = 8.1, Method: Compositional matrix adjust. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Query: 463 GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 G+ + F D+ Y + V+ C K+ + + G GSGKST++NL+ Sbjct: 349 GKGTTVFRDVFFSYKQGHPVLSGINLCF--------KSGKMTALVGPSGSGKSTIINLL 399 >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 24.3 bits (51), Expect = 8.6, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 5/52 (9%) Query: 137 AYNI--HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK--FFQEITVPL 184 A+NI +P+ K++ WT+P R ++ LL+ + L + F +EI +P+ Sbjct: 205 AFNIIHNPRKAKDFEWTSPA-RERLAYDELLAGQIALLLMRKQFKKEIGIPI 255 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.134 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 536,224 Number of Sequences: 1233 Number of extensions: 23650 Number of successful extensions: 86 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 79 Number of HSP's gapped (non-prelim): 13 length of query: 789 length of database: 328,796 effective HSP length: 81 effective length of query: 708 effective length of database: 228,923 effective search space: 162077484 effective search space used: 162077484 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 42 (20.8 bits)