Query gi|254781226|ref|YP_003065639.1| hypothetical protein CLIBASIA_05665 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs 67 out of 69
Neff 3.8
Searched_HMMs 23785
Date Wed Jun 1 02:18:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781226.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u0i_A IAAL-E3; coiled-coil, d 48.4 10 0.00044 16.1 2.8 16 101-116 4-19 (26)
2 1t6f_A Geminin; coiled-coil, c 45.8 12 0.00048 15.8 2.6 20 100-119 10-29 (37)
3 2aqe_A Transcriptional adaptor 16.3 38 0.0016 12.9 0.9 16 2-17 19-34 (90)
4 2cuj_A Transcriptional adaptor 13.7 48 0.002 12.3 0.9 17 2-18 37-53 (108)
5 2elj_A Transcriptional adapter 12.9 45 0.0019 12.4 0.6 16 2-17 19-34 (88)
6 1zhc_A Hypothetical protein HP 11.2 62 0.0026 11.7 1.2 18 103-120 23-40 (76)
7 2yy0_A C-MYC-binding protein; 9.6 71 0.003 11.3 2.4 19 103-121 18-36 (53)
8 1ihq_A Chimeric peptide glytm1 9.5 72 0.003 11.3 2.8 25 94-118 9-33 (38)
9 2o6n_A RH4B designed peptide; 6.8 95 0.004 10.6 2.3 18 105-122 3-20 (35)
10 2wpt_A Colicin-E2 immunity pro 6.7 96 0.004 10.6 2.4 15 42-56 64-78 (86)
No 1
>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} SCOP: k.6.1.1
Probab=48.43 E-value=10 Score=16.07 Aligned_cols=16 Identities=56% Similarity=0.677 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6799999999899875
Q gi|254781226|r 101 MTKAEIEALEREIARL 116 (129)
Q Consensus 101 ~~~~e~~~~~~e~~~~ 116 (129)
-...|+-||++|||.|
T Consensus 4 alekeiaalekeiaal 19 (26)
T 1u0i_A 4 ALEKEIAALEKEIAAL 19 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8999999999999999
No 2
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=45.79 E-value=12 Score=15.84 Aligned_cols=20 Identities=45% Similarity=0.522 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 56799999999899875422
Q gi|254781226|r 100 GMTKAEIEALEREIARLKAK 119 (129)
Q Consensus 100 ~~~~~e~~~~~~e~~~~~~~ 119 (129)
-+.|.||+.-.-|||||+--
T Consensus 10 eklhkeie~kd~eiarlk~e 29 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHH
T ss_conf 99999998601699999984
No 3
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=16.27 E-value=38 Score=12.90 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.4
Q ss_pred CHHHHCHHHHHHHHHH
Q ss_conf 6233023301442399
Q gi|254781226|r 2 GRKVLTPEERMLCRRE 17 (129)
Q Consensus 2 ~r~~~~~~~r~~C~kE 17 (129)
|...|++.|+.+|...
T Consensus 19 g~~lLs~~E~~LC~~l 34 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVV 34 (90)
T ss_dssp STTTSCHHHHHHHHHT
T ss_pred CCHHCCHHHHHHHHHH
T ss_conf 9101699999999991
No 4
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=13.67 E-value=48 Score=12.29 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=13.6
Q ss_pred CHHHHCHHHHHHHHHHH
Q ss_conf 62330233014423999
Q gi|254781226|r 2 GRKVLTPEERMLCRREY 18 (129)
Q Consensus 2 ~r~~~~~~~r~~C~kE~ 18 (129)
|...|++.|+.||....
T Consensus 37 g~~lLs~~E~~LC~~lr 53 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVVR 53 (108)
T ss_dssp TTTTSCHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHC
T ss_conf 91117999999999938
No 5
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=12.92 E-value=45 Score=12.45 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.0
Q ss_pred CHHHHCHHHHHHHHHH
Q ss_conf 6233023301442399
Q gi|254781226|r 2 GRKVLTPEERMLCRRE 17 (129)
Q Consensus 2 ~r~~~~~~~r~~C~kE 17 (129)
|...|++.|+-+|..-
T Consensus 19 g~~LLs~~E~~LC~~l 34 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL 34 (88)
T ss_dssp TCSSSCHHHHHHHHHT
T ss_pred CCHHCCHHHHHHHHHH
T ss_conf 9200799999999993
No 6
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori 26695}
Probab=11.22 E-value=62 Score=11.69 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999998998754223
Q gi|254781226|r 103 KAEIEALEREIARLKAKP 120 (129)
Q Consensus 103 ~~e~~~~~~e~~~~~~~~ 120 (129)
--++++|+++|.++-..|
T Consensus 23 ~~~y~~Ld~eI~~lE~~p 40 (76)
T 1zhc_A 23 FEKHNQLDDDIKTAEQQN 40 (76)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999986589
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=9.56 E-value=71 Score=11.34 Aligned_cols=19 Identities=42% Similarity=0.455 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999989987542239
Q gi|254781226|r 103 KAEIEALEREIARLKAKPI 121 (129)
Q Consensus 103 ~~e~~~~~~e~~~~~~~~~ 121 (129)
-.+++||.-||+-|+.||-
T Consensus 18 ~~DvEaLrlE~~eLkqK~e 36 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYE 36 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 6009999999999999999
No 8
>1ihq_A Chimeric peptide glytm1BZIP: tropomyosin alpha chain, brain-3 and general control...; tropomyosin,EXON 1B,actin-binding; NMR {Rattus norvegicus} SCOP: k.31.1.1 PDB: 2k8x_A
Probab=9.49 E-value=72 Score=11.33 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3034555679999999989987542
Q gi|254781226|r 94 APEEPMGMTKAEIEALEREIARLKA 118 (129)
Q Consensus 94 ~~~~~~~~~~~e~~~~~~e~~~~~~ 118 (129)
+-..-|-+.+-.---|+-|+||||-
T Consensus 9 ai~~k~~~l~~~nyhlenevarlkk 33 (38)
T 1ihq_A 9 AVRRKIRSLQEQNYHLENEVARLKK 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998874668889999999
No 9
>2o6n_A RH4B designed peptide; right-handed, coiled coil, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=6.76 E-value=95 Score=10.61 Aligned_cols=18 Identities=50% Similarity=0.527 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999899875422399
Q gi|254781226|r 105 EIEALEREIARLKAKPIE 122 (129)
Q Consensus 105 e~~~~~~e~~~~~~~~~~ 122 (129)
|++.+.+|||-|--+.-+
T Consensus 3 eieqakkeiaylikkake 20 (35)
T 2o6n_A 3 EIEQAKKEIAYLIKKAKE 20 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 788989999999998799
No 10
>2wpt_A Colicin-E2 immunity protein; immune system, nuclease, antimicrobial, bacteriocin immunity hydrolase, antibiotic, endonuclease; 1.78A {Escherichia coli} PDB: 2no8_A
Probab=6.68 E-value=96 Score=10.59 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999998738
Q gi|254781226|r 42 KDKIRESYHQYYLKN 56 (129)
Q Consensus 42 KEKIke~~Keyy~kN 56 (129)
++-|.+-.++||..|
T Consensus 64 PegI~~~IKeWRa~n 78 (86)
T 2wpt_A 64 PEGIVKEIKEWRAAN 78 (86)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 899999999999974
Done!