Query gi|254781226|ref|YP_003065639.1| hypothetical protein CLIBASIA_05665 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs 67 out of 69
Neff 3.8
Searched_HMMs 13730
Date Wed Jun 1 12:00:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781226.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cuja1 a.4.1.18 (A:8-108) Tra 11.7 34 0.0025 11.8 0.9 16 2-17 30-45 (101)
2 d1p65a_ d.254.1.1 (A:) Arteriv 9.8 40 0.0029 11.4 2.5 21 3-23 3-23 (57)
3 d1ayia_ a.28.2.1 (A:) ImmE7 pr 6.9 54 0.004 10.6 2.4 15 42-56 65-79 (86)
4 d1gxha_ a.28.2.1 (A:) ImmE8 (I 6.7 56 0.0041 10.6 1.9 15 42-56 63-77 (85)
5 d2vlqa1 a.28.2.1 (A:4-84) ImmE 6.6 56 0.0041 10.6 2.4 15 42-56 61-75 (81)
6 d1sf9a_ b.34.15.1 (A:) Hypothe 4.1 90 0.0066 9.4 1.4 12 109-120 27-38 (118)
7 d1a62a1 a.140.3.1 (A:1-47) Rho 3.7 1E+02 0.0074 9.1 1.3 12 114-125 4-15 (47)
8 d1di2a_ d.50.1.1 (A:) Double-s 3.7 1E+02 0.0074 9.1 2.4 19 100-118 51-69 (69)
9 d1t4oa_ d.50.1.1 (A:) RNase II 3.3 1.2E+02 0.0086 8.7 2.2 21 98-118 55-75 (81)
10 d1ekza_ d.50.1.1 (A:) Staufen, 3.0 1.3E+02 0.0094 8.5 -0.0 18 100-117 57-74 (76)
No 1
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.68 E-value=34 Score=11.78 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.1
Q ss_pred CHHHHCHHHHHHHHHH
Q ss_conf 6233023301442399
Q gi|254781226|r 2 GRKVLTPEERMLCRRE 17 (129)
Q Consensus 2 ~r~~~~~~~r~~C~kE 17 (129)
|...|++.|..+|..-
T Consensus 30 ~~~lLs~~E~~LC~~l 45 (101)
T d2cuja1 30 GTEKLNEKEKELCQVV 45 (101)
T ss_dssp TTTTSCHHHHHHHHHT
T ss_pred CHHHCCHHHHHHHHHH
T ss_conf 8002699999999991
No 2
>d1p65a_ d.254.1.1 (A:) Arterivirus nucleocapsid protein {PRRSV (Porcine reproductive and respiratory syndrome virus) [TaxId: 28344]}
Probab=9.77 E-value=40 Score=11.39 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=16.2
Q ss_pred HHHHCHHHHHHHHHHHHHHHH
Q ss_conf 233023301442399999999
Q gi|254781226|r 3 RKVLTPEERMLCRREYKRRYY 23 (129)
Q Consensus 3 r~~~~~~~r~~C~kE~~KkY~ 23 (129)
|-.+++-||.+|..--+-++-
T Consensus 3 RHh~T~~er~lcl~siqtafN 23 (57)
T d1p65a_ 3 RHHFTPSERQLCLSSIQTAFN 23 (57)
T ss_dssp GGGCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 443778899999999999985
No 3
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=6.86 E-value=54 Score=10.65 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999998738
Q gi|254781226|r 42 KDKIRESYHQYYLKN 56 (129)
Q Consensus 42 KEKIke~~Keyy~kN 56 (129)
++-|.+-.++||..|
T Consensus 65 PegI~k~IKeWRa~n 79 (86)
T d1ayia_ 65 PEGIVKEIKEWRAAN 79 (86)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 899999999999975
No 4
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=6.66 E-value=56 Score=10.58 Aligned_cols=15 Identities=7% Similarity=0.222 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999998738
Q gi|254781226|r 42 KDKIRESYHQYYLKN 56 (129)
Q Consensus 42 KEKIke~~Keyy~kN 56 (129)
++-|.+-.++||..|
T Consensus 63 PegIv~~IKeWRa~n 77 (85)
T d1gxha_ 63 PEAVIKEIKEWRAAN 77 (85)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 899999999999975
No 5
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=6.65 E-value=56 Score=10.58 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999998738
Q gi|254781226|r 42 KDKIRESYHQYYLKN 56 (129)
Q Consensus 42 KEKIke~~Keyy~kN 56 (129)
++-|.+-.++||..|
T Consensus 61 PegIv~~IK~WRa~n 75 (81)
T d2vlqa1 61 PSGIVNTVKQWRAAN 75 (81)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 899999999999974
No 6
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}
Probab=4.09 E-value=90 Score=9.39 Aligned_cols=12 Identities=50% Similarity=0.559 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 998998754223
Q gi|254781226|r 109 LEREIARLKAKP 120 (129)
Q Consensus 109 ~~~e~~~~~~~~ 120 (129)
|..||+.|+.|.
T Consensus 27 L~~EIa~L~EKa 38 (118)
T d1sf9a_ 27 LNTEIALLSEKA 38 (118)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 7
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.74 E-value=1e+02 Score=9.11 Aligned_cols=12 Identities=50% Similarity=0.847 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 875422399974
Q gi|254781226|r 114 ARLKAKPIEELI 125 (129)
Q Consensus 114 ~~~~~~~~~~~~ 125 (129)
.-|+.+++++|.
T Consensus 4 seLk~k~~~EL~ 15 (47)
T d1a62a1 4 TELKNTPVSELI 15 (47)
T ss_dssp HHHHTSCHHHHH
T ss_pred HHHHCCCHHHHH
T ss_conf 988159999999
No 8
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}
Probab=3.71 E-value=1e+02 Score=9.09 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 5679999999989987542
Q gi|254781226|r 100 GMTKAEIEALEREIARLKA 118 (129)
Q Consensus 100 ~~~~~e~~~~~~e~~~~~~ 118 (129)
++..+|++|+..-+..|+.
T Consensus 51 sKK~Aeq~AA~~aL~~L~s 69 (69)
T d1di2a_ 51 SKQVAKRVAAEKLLTKFKT 69 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHCC
T ss_conf 2999999999999998459
No 9
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.28 E-value=1.2e+02 Score=8.72 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 555679999999989987542
Q gi|254781226|r 98 PMGMTKAEIEALEREIARLKA 118 (129)
Q Consensus 98 ~~~~~~~e~~~~~~e~~~~~~ 118 (129)
--|...+|++|+..-+..+++
T Consensus 55 g~SKK~AEq~AA~~aL~~~~~ 75 (81)
T d1t4oa_ 55 GRNIKIAGIRAAENALRDKKM 75 (81)
T ss_dssp ESSHHHHHHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCH
T ss_conf 330108999999999983228
No 10
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.01 E-value=1.3e+02 Score=8.51 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 567999999998998754
Q gi|254781226|r 100 GMTKAEIEALEREIARLK 117 (129)
Q Consensus 100 ~~~~~e~~~~~~e~~~~~ 117 (129)
|.+.+|++|+..-+..|+
T Consensus 57 SKK~Aeq~AA~~al~~L~ 74 (76)
T d1ekza_ 57 GKKVSKKRAAEKMLVELQ 74 (76)
T ss_dssp STTSSSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 699999999999999987
Done!