RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781226|ref|YP_003065639.1| hypothetical protein
CLIBASIA_05665 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>gnl|CDD|165391 PHA03118, PHA03118, multifunctional expression regulator;
           Provisional.
          Length = 474

 Score = 29.7 bits (66), Expect = 0.23
 Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 16  REYKRRYYLKNRDKILERRRRRYL--------KNKDKIRESYHQYYLKNKDKYREYKRRY 67
           + Y ++   K+RD+ L  +  R          ++ D+  ++ ++     +D  R+  R+ 
Sbjct: 136 KSYNQQSRKKHRDESLRNKHGRPSGPPAMSPGEHFDQTHDAEYRLRFNERDARRDRIRKE 195

Query: 68  YLKNRDKMREKARQ 81
           Y    DK+ E+A +
Sbjct: 196 YDIPTDKITEQAIE 209


>gnl|CDD|162459 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
           splicing factor.  Members of this subfamily are found in
           plants, metazoa and fungi.
          Length = 509

 Score = 27.2 bits (60), Expect = 1.2
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 15  RREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKNRDK 74
           RR  +R Y   +R     R RRRY     +          +++ + R    R   ++R +
Sbjct: 39  RRSRERSYREDSRP----RDRRRYDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRR 94

Query: 75  MREKARQSYRKLYSKDS 91
           +R+++  +  +   K  
Sbjct: 95  LRDRSPSNQWRKDDKKR 111


>gnl|CDD|150300 pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap.
           This protein is a putative poly-gamma-glutamate capsule
           biosynthesis protein found in bacteria.
           Poly-gamma-glutamate is a natural polymer that may be
           involved in virulence and may help bacteria survive in
           high salt concentrations. It is a surface-associated
           protein.
          Length = 237

 Score = 27.2 bits (61), Expect = 1.3
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 87  YSKDSWIAPEEPMGMTKAEIEALEREIARLKAKP 120
           Y  + W A     G+   + E ++ +I R K K 
Sbjct: 138 YGTNGWGAGPYRPGVNPLDEEKIKADIRRAKKKA 171


>gnl|CDD|179061 PRK00550, rpsE, 30S ribosomal protein S5; Validated.
          Length = 168

 Score = 26.6 bits (60), Expect = 1.8
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 5/33 (15%)

Query: 98  PMGMTKAEIEALE-----REIARLKAKPIEELI 125
           P+ + +A  +AL+      E+A  + K +EE++
Sbjct: 135 PINVVRATFDALKQLRSPEEVAAKRGKSVEEIL 167


>gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
           protein; Reviewed.
          Length = 782

 Score = 26.7 bits (60), Expect = 1.9
 Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 31  LERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKNRDKMREKARQSYRKLYSKD 90
           LER   +  +  + + +   +   + ++K  + +        DK+ E+A +  ++   + 
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE-----EDKLLEEAEKEAQQAIKE- 581

Query: 91  SWIAPEEPMGMTKAEIEALEREIARLKAKPIEE 123
              A +E   + K   +  +   A +KA  + E
Sbjct: 582 ---AKKEADEIIKELRQLQKGGYASVKAHELIE 611


>gnl|CDD|180929 PRK07324, PRK07324, transaminase; Validated.
          Length = 373

 Score = 26.4 bits (59), Expect = 2.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 22  YYLKNRDKILERRRR 36
             L++RD ILER R+
Sbjct: 265 LALEHRDAILERNRK 279


>gnl|CDD|178947 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
          Length = 865

 Score = 25.8 bits (58), Expect = 3.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 103 KAEIEALEREIARLKAK 119
             E++ LE+E+ +LKAK
Sbjct: 725 LEELKELEKELEQLKAK 741


>gnl|CDD|131371 TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM.
           This family consists of proteins from in the PhnM
           family. PhnM is a a protein associated with phosphonate
           utilization in a number of bacterial species. In
           Pseudomonas stutzeri WM88, a protein that is part of a
           system for the oxidation of phosphites (another form of
           reduced phosphorous compound) scores between trusted and
           noise cutoffs.
          Length = 376

 Score = 25.8 bits (57), Expect = 3.4
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 1   MGRKVLTPEE--RMLCRREYKRR-YYLKNRDKILERRRRR 37
            G++ L+ +E   ++  R  +R  Y L NR +I    R R
Sbjct: 182 RGKRGLSDDEFDEIVEERIARRAEYGLANRSEIAALARAR 221


>gnl|CDD|178831 PRK00058, PRK00058, methionine sulfoxide reductase A; Provisional.
          Length = 213

 Score = 25.6 bits (57), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 1/15 (6%)

Query: 47  ESYHQYYL-KNKDKY 60
           E YHQ YL KN + Y
Sbjct: 185 EDYHQQYLAKNPNGY 199


>gnl|CDD|152291 pfam11855, DUF3375, Protein of unknown function (DUF3375).  This
           family of proteins are functionally uncharacterized.
           This protein is found in bacteria. Proteins in this
           family are typically between 479 to 499 amino acids in
           length.
          Length = 471

 Score = 25.8 bits (57), Expect = 3.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 95  PEEPMGMTKAEIEALEREIARLKAKPIEEL 124
           PE  +   + EI+ L+ EI RL+A  +  L
Sbjct: 139 PEARLAELEREIDELDAEIDRLEAGDVPLL 168


>gnl|CDD|180782 PRK06975, PRK06975, bifunctional uroporphyrinogen-III
           synthetase/uroporphyrin-III C-methyltransferase;
           Reviewed.
          Length = 656

 Score = 25.4 bits (56), Expect = 3.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 107 EALEREIARLKAKP 120
           +A+ ++I RLKA P
Sbjct: 467 KAIAQDIERLKAAP 480


>gnl|CDD|179117 PRK00770, PRK00770, deoxyhypusine synthase-like protein;
           Provisional.
          Length = 384

 Score = 25.5 bits (56), Expect = 3.9
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 16  REYKRRYYLKNRDKILERRRRRYLKNKDK 44
           R  KR Y    R+++ E+ ++ YL  KD+
Sbjct: 335 RPLKRLY--DRREEMYEKLQKDYLAAKDQ 361


>gnl|CDD|180063 PRK05415, PRK05415, hypothetical protein; Provisional.
          Length = 341

 Score = 25.6 bits (57), Expect = 4.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 61  REYKRRYYLKNRDKMREKARQ 81
           RE++R   L+ R  +R++AR 
Sbjct: 120 REWRRLRRLRQRAHLRDEARA 140


>gnl|CDD|173392 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
          Length = 116

 Score = 25.6 bits (56), Expect = 4.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 41 NKDKIRESYHQYYLKN 56
          +K++IRE++ Q  L+N
Sbjct: 78 SKERIREAHKQLMLRN 93


>gnl|CDD|180223 PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase
           subunit alpha; Validated.
          Length = 319

 Score = 25.1 bits (56), Expect = 4.8
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 8/41 (19%)

Query: 96  EEPMG--------MTKAEIEALEREIARLKAKPIEELIYKR 128
            EP+G           A  EAL   +A LK    EEL+ +R
Sbjct: 266 PEPLGGAHRDPEAAAAALKEALLEALAELKGLSPEELLERR 306


>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional.
          Length = 453

 Score = 25.2 bits (55), Expect = 4.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 39  LKNKDKIRESYHQYYLKNKDKYREY 63
           LKN++KI ++   +YL  +DK++ Y
Sbjct: 267 LKNQNKIEQAVFTFYLPPEDKHKGY 291


>gnl|CDD|182197 PRK10018, PRK10018, putative glycosyl transferase; Provisional.
          Length = 279

 Score = 25.3 bits (55), Expect = 4.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 49  YHQYYLKNKDKYREYKRRYYLKNRDKMREKARQSYRKL 86
           Y  +Y K+KDK+    ++Y L    ++R K R ++R L
Sbjct: 224 YFHFYRKHKDKFDRASKKYQLFTLYQIRNK-RMTWRTL 260


>gnl|CDD|165477 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
          Length = 461

 Score = 25.2 bits (55), Expect = 5.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 95  PEEPMGMTKAEIEALEREIAR 115
           P  P G+T  E+E L+RE AR
Sbjct: 130 PAPPGGLTPEELERLDREAAR 150


>gnl|CDD|181827 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
          Length = 524

 Score = 25.2 bits (56), Expect = 5.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 21  RYYLKNRDKILERRRRR 37
           RYY +   K+L  RRR 
Sbjct: 123 RYYARRAPKLLAPRRRA 139


>gnl|CDD|151899 pfam11460, DUF3007, Protein of unknown function (DUF3007).  This is
           a family of uncharacterized proteins found in bacteria
           and eukaryotes.
          Length = 104

 Score = 25.0 bits (55), Expect = 6.0
 Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 80  RQSYRKLYSKDSWIAPEEPM-GMTKAEIEALEREI 113
           R+ YR+ Y   +    ++    ++  E+EAL+ E+
Sbjct: 68  RRDYREAYDALTNEELQKRFDSLSPEELEALQAEL 102


>gnl|CDD|150626 pfam09972, DUF2207, Predicted membrane protein (DUF2207).  This
           domain, found in various hypothetical bacterial
           proteins, has no known function.
          Length = 460

 Score = 24.6 bits (54), Expect = 8.2
 Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 16/107 (14%)

Query: 23  YLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKNRDKMREKARQS 82
              + +    +  ++  +      + + ++    K   +E  ++    N           
Sbjct: 343 KKGDDNLFSLKELKKKEQKSKSFAKKFKKW---QKSVKKEVDKKGLFDNY---------R 390

Query: 83  YRKLYSKDSWIAPEEPMGM-TKAEIEALE---REIARLKAKPIEELI 125
           Y +  +         P G     E +  +   ++I+ LK  P E++I
Sbjct: 391 YLRSNTFRKLFGAWTPEGAEEYLEWKGFKNYLKDISLLKMAPPEDII 437


>gnl|CDD|182583 PRK10604, PRK10604, sensor protein RstB; Provisional.
          Length = 433

 Score = 24.6 bits (54), Expect = 8.4
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 100 GMTKAEIEALEREIARLKAKPIEELI-YKR 128
            ++ AE +AL R+I +L+A  IEEL+ Y R
Sbjct: 239 NLSAAESQALNRDIGQLEAL-IEELLTYAR 267


>gnl|CDD|184524 PRK14127, PRK14127, cell division protein GpsB; Provisional.
          Length = 109

 Score = 24.6 bits (54), Expect = 8.6
 Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 1/21 (4%)

Query: 104 AEIEALEREIARLKAKPIEEL 124
            EIE L++E ARLKA+ ++EL
Sbjct: 44  KEIEELQQENARLKAQ-VDEL 63


>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA
           hydrolase.  Members of this protein family are
           6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a
           ring-hydrolyzing enzyme in the anaerobic metabolism of
           aromatic enzymes by way of benzoyl-CoA, as seen in
           Thauera aromatica, Geobacter metallireducens, and
           Azoarcus sp. Note that Rhodopseudomonas palustris uses a
           different pathway to perform a similar degradation of
           benzoyl-CoA to 3-hydroxpimelyl-CoA.
          Length = 360

 Score = 24.5 bits (53), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 49  YHQYYLKNKDKYREYKR 65
           Y +YY  N  +YR+Y R
Sbjct: 95  YAEYYAGNPQEYRQYMR 111


>gnl|CDD|184436 PRK13981, PRK13981, NAD synthetase; Provisional.
          Length = 540

 Score = 24.3 bits (54), Expect = 9.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 10  ERMLCRREYKRR 21
           ER+L   EYKRR
Sbjct: 501 ERLLYIAEYKRR 512


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,354,153
Number of extensions: 150394
Number of successful extensions: 833
Number of sequences better than 10.0: 1
Number of HSP's gapped: 804
Number of HSP's successfully gapped: 162
Length of query: 129
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,201,009
Effective search space: 193246414
Effective search space used: 193246414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)