RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781226|ref|YP_003065639.1| hypothetical protein
CLIBASIA_05665 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 30.2 bits (68), Expect = 0.096
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 22/108 (20%)

Query: 2   GRKVLTPEERMLCRREY--KRRYYLKNRDKILERRRRRYLKNKDKI---RESYHQY---- 52
           G+ +LT        RE+    +Y   N +  ++ R+R+ +  + +I    E+  +     
Sbjct: 3   GKGILT------TAREHHSSVKYASPNLN--MKYRKRQLVTREAQIKDWVENELEALKLE 54

Query: 53  --YLKNKD--KYREYKRRYYLKNRDKMREKARQSY-RKLYSKDSWIAP 95
              + ++D  ++   + R      +     A+Q +    Y +D  IAP
Sbjct: 55  AEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAP 102



 Score = 24.5 bits (53), Expect = 4.8
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 26/70 (37%)

Query: 59  KYREYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKA 118
           KYR  KR+  L  R+   +   ++                      E+EAL+ E   + +
Sbjct: 27  KYR--KRQ--LVTREAQIKDWVEN----------------------ELEALKLEAEEIPS 60

Query: 119 KPIEELIYKR 128
           +   E + +R
Sbjct: 61  EDQNEFLLER 70


>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1,
          phosphorylation; NMR {Arabidopsis thaliana} (A:)
          Length = 139

 Score = 28.0 bits (62), Expect = 0.48
 Identities = 6/80 (7%), Positives = 20/80 (25%), Gaps = 3/80 (3%)

Query: 18 YKRRYYLKNRDKIL--ERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYL-KNRDK 74
              ++  +    L                         + K  +++ + +  L   R+ 
Sbjct: 1  MGSSHHHHHHSSGLVPRGSHMASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREA 60

Query: 75 MREKARQSYRKLYSKDSWIA 94
            E+ +     + S  +   
Sbjct: 61 AVEQLKSIREDIVSGKANFE 80


>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A
           {Bordetella pertussis tohama I} (A:)
          Length = 312

 Score = 27.7 bits (61), Expect = 0.51
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 90  DSWIAPEEPMGMTKAEIEALEREIARLKAKP 120
             W     P G  K  ++ L + +    A P
Sbjct: 236 GIWHGXWAPKGTPKPVVDKLVKSLQAGLADP 266


>2dvz_A BUGE, putative exported protein; periplamsic binding
           proteins, carboxylate binding, glutamate, transport
           protein; HET: GLU; 2.30A {Bordetella pertussis} (A:)
          Length = 314

 Score = 27.7 bits (61), Expect = 0.54
 Identities = 5/31 (16%), Positives = 6/31 (19%)

Query: 90  DSWIAPEEPMGMTKAEIEALEREIARLKAKP 120
             W     P G     +  L          P
Sbjct: 240 PVWYGLLAPKGTPXDVVNKLRDAAVVALKDP 270


>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport
           protein; HET: CIT; 1.92A {Bordetella pertussis} (A:)
          Length = 301

 Score = 26.9 bits (59), Expect = 0.94
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 87  YSKDSWIAPEEPMGMTKAEIEALEREIARLKAKP 120
           Y  + W     P     A  + L   IA++  + 
Sbjct: 224 YELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRD 257


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} (F:1-76)
          Length = 76

 Score = 25.8 bits (56), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)

Query: 73  DKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIE 107
           +K   K  Q+  KLY+ DS  AP   +   KA +E
Sbjct: 18  EKQALKKLQASLKLYADDS--APALAI---KATME 47


>2gas_A Isoflavone reductase; NADPH-dependent reductase,
           oxidoreductase; 1.60A {Medicago sativa} (A:1-144)
          Length = 144

 Score = 25.7 bits (55), Expect = 2.4
 Identities = 4/26 (15%), Positives = 8/26 (30%)

Query: 87  YSKDSWIAPEEPMGMTKAEIEALERE 112
             +   + P   +   KA I  +   
Sbjct: 117 VDRHDAVEPVRQVFEEKASIRRVIEA 142


>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major}
           PDB: 2vps_A 2vpm_A (A:1-16,A:206-508,A:591-652)
          Length = 381

 Score = 25.0 bits (54), Expect = 3.9
 Identities = 6/64 (9%), Positives = 11/64 (17%)

Query: 53  YLKNKDKYREYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEALERE 112
            L+      E K  +   N    R    +    +                          
Sbjct: 31  LLRRNFLPTESKANWLDMNNPAERLFVEEFGMDVSRTRLEEKVVSYYESNHEFHLRCVAY 90

Query: 113 IARL 116
             +L
Sbjct: 91  GTQL 94


>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix
           bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
           (A:)
          Length = 183

 Score = 24.0 bits (52), Expect = 6.2
 Identities = 7/48 (14%), Positives = 15/48 (31%)

Query: 73  DKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKAKP 120
           D +R         L+     +       +T A +  L+  +A    + 
Sbjct: 56  DDVRAALSAIQHDLFDLGGELCIPGHAAITDAHLARLDGWLAHYNGQL 103


>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI,
           protein structure initiative, MCSG, NAD-dependent; HET:
           G6P NAD; 2.05A {Bacillus subtilis} (X:195-400)
          Length = 206

 Score = 24.1 bits (52), Expect = 6.5
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 33  RRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKNRDKMREKARQSYRKLYSKDSW 92
           + R     + D +  +Y QYYL   D  ++    +    R     + R+++         
Sbjct: 78  KARDVQAADPDTLPNTYLQYYLFPDDXVKKSNPNH---TRANEVXEGREAFIFSQCD--X 132

Query: 93  IAPEEPMGMTKAEIEALEREIARL 116
           I  E+    ++ +I+     I  L
Sbjct: 133 ITREQSSENSEIKIDDHASYIVDL 156


>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach
           chloroplast ribosome, ribonucleoprotein particle,
           macromolecular complex; 9.40A {Cucumis sativus} (U:)
          Length = 190

 Score = 24.3 bits (52), Expect = 6.8
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 33  RRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKNRDKMREKARQSYRKLYSKDSW 92
           +RRR +   +D  +          +   R  +RR   +   + ++    + ++    D+W
Sbjct: 128 KRRRFFENTQDVRKR------KTREAAKRNRRRRPQARFTPQNKQDVPATKQE-ADDDNW 180

Query: 93  IAPEE 97
             PE+
Sbjct: 181 DLPED 185


>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC,
           target 10395N, PSI-2, protein structure initiative;
           1.95A {Leeuwenhoekiella blandensis MED217}
           (A:120-179,A:361-444)
          Length = 144

 Score = 23.6 bits (51), Expect = 8.7
 Identities = 7/76 (9%), Positives = 23/76 (30%), Gaps = 6/76 (7%)

Query: 11  RMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLK 70
           ++L + +   +  L +R+ I +      +     +     +   +  D    +  +   +
Sbjct: 47  KVLSQSKPGAQGGLNSREVIEKEIAGYEI-----LSTLL-EARCRALDNNDTHYNQLIQQ 100

Query: 71  NRDKMREKARQSYRKL 86
                    +  Y  L
Sbjct: 101 LLAPNDHSEKSLYENL 116


>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase,
           product complex, structural genomics, PSI, protein
           structure initiative; 1.50A {Mycobacterium tuberculosis}
           (A:)
          Length = 203

 Score = 23.8 bits (51), Expect = 8.7
 Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 4/40 (10%)

Query: 47  ESYHQ-YYLKNKDKYREYKRRYYLKNRDKMREKARQSYRK 85
           E  HQ Y  +  + Y  +  R         R  A  + R 
Sbjct: 159 EPEHQDYLQRYPNGYTCHFVR---PGWRLPRRTAESALRA 195


>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase;
           1.60A {Bos taurus} (A:)
          Length = 199

 Score = 23.8 bits (51), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 1/15 (6%)

Query: 47  ESYHQYYL-KNKDKY 60
           E YHQ YL K+ D Y
Sbjct: 183 EDYHQQYLSKDPDGY 197


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0360    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,136,287
Number of extensions: 57818
Number of successful extensions: 541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 142
Length of query: 129
Length of database: 4,956,049
Length adjustment: 77
Effective length of query: 52
Effective length of database: 2,353,064
Effective search space: 122359328
Effective search space used: 122359328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (24.1 bits)