RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781226|ref|YP_003065639.1| hypothetical protein
CLIBASIA_05665 [Candidatus Liberibacter asiaticus str. psy62]
(129 letters)
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme)
{Plasmodium vivax [TaxId: 5855]}
Length = 373
Score = 29.2 bits (64), Expect = 0.12
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 25 KNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKN 71
+ DK+L+ ++ LKN K ++ + ++ L +
Sbjct: 10 RPYDKVLKTISKKNLKNYIKETFNFFKSGYMKQNYLGSENDVIELDD 56
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase
{Escherichia coli [TaxId: 562]}
Length = 211
Score = 26.2 bits (57), Expect = 0.86
Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 47 ESYHQYYL-KNKDKY 60
E HQ YL KN Y
Sbjct: 183 EDDHQQYLHKNPYGY 197
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 26.3 bits (58), Expect = 0.95
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 9 EERMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYY 53
EE ML +Y ++YY + L R D+IR YY
Sbjct: 316 EEVMLDEPQYWKKYYRTGFNDSLLDIRYSLS---DRIR-----YY 352
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 204
Score = 26.0 bits (56), Expect = 1.1
Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 5/114 (4%)
Query: 21 RYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKNRDKMREKAR 80
R + + + ++++ K N D E+
Sbjct: 76 RKSIADTNAVIQKYAGTTPKFFRPPNLETSPTLFNNVDLVFVGGLTANDWIPSTTAEQRA 135
Query: 81 QSYRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKAK-----PIEELIYKRG 129
+ + I + EAL+ I LK++ + EL +G
Sbjct: 136 AAVINGVRDGTIILLHDVQPEPHPTPEALDIIIPTLKSRGYEFVTLTELFTLKG 189
>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase
{Thermotoga maritima [TaxId: 2336]}
Length = 253
Score = 25.6 bits (56), Expect = 1.3
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 17 EYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYK----RRYYLKNR 72
+ LK + E + + I Y +YYL K +++ R +
Sbjct: 47 KVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKI 106
Query: 73 DKMREKARQSYRKLY 87
+K + ++ ++
Sbjct: 107 EKELFEKYRTAVEIP 121
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow
(Bos taurus) [TaxId: 9913]}
Length = 192
Score = 25.5 bits (55), Expect = 1.4
Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 47 ESYHQYYL-KNKDKY 60
E YHQ YL K+ D Y
Sbjct: 177 EDYHQQYLSKDPDGY 191
>d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus
sp., M4 [TaxId: 1831]}
Length = 148
Score = 25.3 bits (55), Expect = 2.0
Identities = 4/53 (7%), Positives = 13/53 (24%)
Query: 70 KNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKAKPIE 122
+ R + + A+++ L + + +E
Sbjct: 90 IDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTTEFVFGRSLE 142
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 24.3 bits (52), Expect = 3.6
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 11 RMLCRREYKRRYYLKNRDKILERRRRRYLKNKD 43
L R EY+ + ++ R ++ K
Sbjct: 747 GFLMRVEYRAMVERRESIFCIQYNVRSFMNVKH 779
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 580
Score = 24.2 bits (52), Expect = 3.9
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 18 YKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNK 57
+ +Y + ++ + L N D I+E+ + +
Sbjct: 540 FNFQYPNQAFKRLHDLMHFNTLNNIDVIKEAMVESIEYRR 579
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 23.9 bits (51), Expect = 4.9
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 11 RMLCRREYKRRYYLKNRDKILERRRRRYLKNKD 43
L R+ YK+ + +++R R++L ++
Sbjct: 743 GYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 775
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 23.8 bits (50), Expect = 5.4
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 59 KYREYKRRYYLKNRDKMREKARQSYRKLYSKD--SWIAPEEPM----GMTKAEIEALERE 112
+ ++RE+ R L D ++A M G T +++ ++ E
Sbjct: 302 ADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEE 361
>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA
{Escherichia coli [TaxId: 562]}
Length = 209
Score = 23.8 bits (51), Expect = 5.4
Identities = 6/50 (12%), Positives = 18/50 (36%)
Query: 22 YYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKN 71
+++ R + L + I + + DK + + +L++
Sbjct: 106 FFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQD 155
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 23.2 bits (49), Expect = 7.7
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 42 KDKIRESYHQYYLKNKDKYREYKRRYYLKNRDKMREKAR 80
+ IR++ ++YL N K Y ++ E +
Sbjct: 324 ESGIRKTV-EWYLANTQWVNNVKSGAYQSWIEQNYEGRQ 361
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 23.0 bits (48), Expect = 8.1
Identities = 9/70 (12%), Positives = 20/70 (28%), Gaps = 10/70 (14%)
Query: 49 YHQYYLKNKDKYREYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGM------T 102
+ L R ++R + L + +W + +GM
Sbjct: 311 SDPELFHEWTGNVKTMADRILSMRSELRARLE----ALKTPGTWNHITDQIGMFSFTGLN 366
Query: 103 KAEIEALERE 112
++E L +
Sbjct: 367 PKQVEYLINQ 376
>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA
{Bacillus subtilis [TaxId: 1423]}
Length = 276
Score = 23.0 bits (49), Expect = 8.1
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 5/63 (7%)
Query: 28 DKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRY-----YLKNRDKMREKARQS 82
+ + R + D + +Y QYYL D ++ + ++ R+
Sbjct: 75 NDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDM 134
Query: 83 YRK 85
+
Sbjct: 135 ITR 137
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 22.9 bits (48), Expect = 8.5
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 103 KAEIEALEREIARLKAKPIEELIYK 127
+ + E E+ L +++
Sbjct: 715 LKQKQEKETELENLLKLSAKDIWNT 739
>d1x99a_ b.97.1.2 (A:) Lectin xcl {Xerocomus chrysenteron [TaxId:
5386]}
Length = 145
Score = 22.9 bits (49), Expect = 8.8
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 54 LKNKDKYREYKRRYY-LKNRDKMREKARQSYRKLYSK 89
LK + +YY RD +REK Y +
Sbjct: 86 LKPDETALVINPQYYNNGGRDYVREKQLAEYSVTSAI 122
>d1bxta2 d.15.6.1 (A:120-234) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 115
Score = 22.8 bits (49), Expect = 9.4
Identities = 9/62 (14%), Positives = 14/62 (22%), Gaps = 6/62 (9%)
Query: 17 EYKRRYYLKNRDKILERRRRRYLK------NKDKIRESYHQYYLKNKDKYREYKRRYYLK 70
+ K R L +R + E Y Y + Y
Sbjct: 38 DCKTRKILVSRKNLYEFNNSPYETGYIKFIESSGDSFWYDMMPAPGAIFDQSKYLMLYND 97
Query: 71 NR 72
N+
Sbjct: 98 NK 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0665 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 554,281
Number of extensions: 28950
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 94
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.4 bits)