BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781226|ref|YP_003065639.1| hypothetical protein
CLIBASIA_05665 [Candidatus Liberibacter asiaticus str. psy62]
(129 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781226|ref|YP_003065639.1| hypothetical protein CLIBASIA_05665 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 129
Score = 248 bits (632), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MGRKVLTPEERMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKY 60
MGRKVLTPEERMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKY
Sbjct: 1 MGRKVLTPEERMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKY 60
Query: 61 REYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKAKP 120
REYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKAKP
Sbjct: 61 REYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKAKP 120
Query: 121 IEELIYKRG 129
IEELIYKRG
Sbjct: 121 IEELIYKRG 129
>gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 410
Score = 28.5 bits (62), Expect = 0.038, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Query: 1 MGRKVLTPEERMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKY 60
+GR + PE+R L R E++R +RD+++ R LK+K ++ ++ + +D Y
Sbjct: 25 LGR--MYPEKRSLTRSEFQR-----DRDRMIHTTAFRRLKDKTQV------FFHRQRDHY 71
Query: 61 R 61
R
Sbjct: 72 R 72
>gi|254780148|ref|YP_003064561.1| transcription antitermination protein NusG [Candidatus Liberibacter
asiaticus str. psy62]
Length = 177
Score = 23.1 bits (48), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 96 EEPMGMTKAEIEALEREIARLKAKPIEELIYKRG 129
E P +T +EIE + ++ +P+ + ++ G
Sbjct: 93 ENPSPVTDSEIEHIMNQVEAAVQRPVSSVFFEVG 126
>gi|254781066|ref|YP_003065479.1| putative lysyl-tRNA synthetase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 355
Score = 22.3 bits (46), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 26 NRDKILERRRRRYLKNKDKIRESYHQYYLKNK 57
NRD RRR +L ++ I+ S +Y+++N+
Sbjct: 11 NRD--FHYRRRPFLLKRNMIQSSLREYFVENQ 40
>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
Length = 896
Score = 21.9 bits (45), Expect = 4.2, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 38 YLKNKDKIRESYHQYYLKNKDKYREYK 64
Y NKD + + Y +N+++YR K
Sbjct: 138 YSGNKDAVTRNKDLEYQRNEERYRFLK 164
>gi|254780289|ref|YP_003064702.1| RNA polymerase sigma factor RpoD [Candidatus Liberibacter asiaticus
str. psy62]
Length = 682
Score = 21.6 bits (44), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 6 LTP-EERMLCRREYKRRYYLK-NRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREY 63
LTP EER+L + R+ + N D LE +++ +++IR+ + K K R
Sbjct: 620 LTPREERVL-----RMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSK 674
Query: 64 KRRYYLKN 71
K R +L
Sbjct: 675 KLRSFLDG 682
>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 443
Score = 21.6 bits (44), Expect = 5.4, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 36 RRYLKNKDKIRESYHQYYLKNK 57
++ +KN+D I +Y ++L+NK
Sbjct: 419 QKLIKNEDIIEGNYDIHWLENK 440
>gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 766
Score = 21.6 bits (44), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 67 YYLKNRDKMREKARQSYRKLYSK 89
YY NR K+ ++Q++++ Y+
Sbjct: 14 YYPGNRQKITVSSKQAFKRAYTS 36
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,938
Number of Sequences: 1233
Number of extensions: 3466
Number of successful extensions: 28
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 16
length of query: 129
length of database: 328,796
effective HSP length: 65
effective length of query: 64
effective length of database: 248,651
effective search space: 15913664
effective search space used: 15913664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 33 (17.3 bits)